The similarity scores can be found in the similarity_scores.zip file For more information on how to use them, see the documentation at https://bonheml.github.io/VAE_learning_dynamics/reproduce.html and the original implementation at https://github.com/bonheml/VAE_learning_dynamics. If you wish to reuse this data together with the default path of vae_ld command line tools, make sure to unzip the files to $XP_PATH/visualise_similarity where $XP_PATH is the environment variable you defined.