############################################################################################### ############# Pfam MMSYN1_0001 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:55 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0001.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0001 110 329 108 330 PF00308.16 Bac_DnaA Domain 3 218 219 295.6 2.3e-88 1 CL0023 MMSYN1_0001 358 426 358 426 PF08299.9 Bac_DnaA_C Domain 1 69 69 91.0 3.1e-26 1 CL0123 ############################################################################################### ############# Pfam MMSYN1_0001 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0002 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:56 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0002.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0002 1 123 1 124 PF00712.17 DNA_pol3_beta Domain 1 120 121 116.1 8.8e-34 1 CL0060 MMSYN1_0002 134 247 133 247 PF02767.14 DNA_pol3_beta_2 Domain 2 116 116 118.0 2.3e-34 1 CL0060 MMSYN1_0002 251 371 249 372 PF02768.13 DNA_pol3_beta_3 Domain 3 120 121 123.9 2.7e-36 1 CL0060 ############################################################################################### ############# Pfam MMSYN1_0002 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0003 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:31 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0003.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0003 6 81 6 92 PF01751.20 Toprim Family 1 97 103 36.0 5.8e-09 1 CL0413 MMSYN1_0003 95 174 95 175 PF13331.4 DUF4093 Family 1 82 83 50.3 2.2e-13 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0003 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0004 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:19 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0004.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0004 2 261 1 263 PF00398.18 RrnaAD Domain 3 263 265 187.4 2.2e-55 1 CL0063 ############################################################################################### ############# Pfam MMSYN1_0004 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0005 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:36 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0005.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0005 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0006 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:37 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0006.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0006 32 174 30 175 PF02518.24 HATPase_c Domain 3 110 111 65.2 6.5e-18 1 CL0025 MMSYN1_0006 221 390 221 391 PF00204.23 DNA_gyraseB Domain 1 174 175 193.1 2.5e-57 1 CL0329 MMSYN1_0006 419 530 419 531 PF01751.20 Toprim Family 1 102 103 67.1 1.2e-18 1 CL0413 MMSYN1_0006 563 623 561 623 PF00986.19 DNA_gyraseB_C Family 3 63 63 90.9 3.8e-26 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0006 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0007 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:15 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0007.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0007 46 484 46 486 PF00521.18 DNA_topoisoIV Family 1 425 427 491.7 1.7e-147 1 No_clan MMSYN1_0007 520 548 518 551 PF03989.11 DNA_gyraseA_C Repeat 3 31 48 23.9 1.8e-05 1 No_clan MMSYN1_0007 567 617 567 618 PF03989.11 DNA_gyraseA_C Repeat 1 47 48 43.4 1.6e-11 1 No_clan MMSYN1_0007 626 669 625 670 PF03989.11 DNA_gyraseA_C Repeat 2 47 48 47.7 7.1e-13 1 No_clan MMSYN1_0007 673 717 673 719 PF03989.11 DNA_gyraseA_C Repeat 1 45 48 34.7 8e-09 1 No_clan MMSYN1_0007 725 760 723 768 PF03989.11 DNA_gyraseA_C Repeat 3 38 48 34.8 7.3e-09 1 No_clan MMSYN1_0007 774 817 774 819 PF03989.11 DNA_gyraseA_C Repeat 1 44 48 43.1 1.9e-11 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0007 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0008 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:11 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0008.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0008 14 291 9 306 PF02653.14 BPD_transp_2 Family 6 256 268 105.7 2.1e-30 1 CL0142 ############################################################################################### ############# Pfam MMSYN1_0008 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0009 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:38 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0009.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0009 74 350 71 351 PF02653.14 BPD_transp_2 Family 5 267 268 118.0 3.7e-34 1 CL0142 ############################################################################################### ############# Pfam MMSYN1_0009 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0010 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:25 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0010.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0010 29 178 28 178 PF00005.25 ABC_tran Domain 2 137 137 102.6 2.2e-29 1 CL0023 MMSYN1_0010 286 442 285 443 PF00005.25 ABC_tran Domain 2 136 137 40.0 4.5e-10 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0010 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0011 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:56 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0011.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0011 38 196 36 211 PF02608.12 Bmp Family 3 117 302 25.5 5.2e-06 1 CL0144 MMSYN1_0011 328 406 302 444 PF02608.12 Bmp Family 172 246 302 26.9 1.9e-06 1 CL0144 ############################################################################################### ############# Pfam MMSYN1_0011 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0012 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:48 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0012.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0012 3 138 1 144 PF00133.20 tRNA-synt_1 Family 23 177 602 54.6 5e-15 1 CL0039 MMSYN1_0012 142 363 141 364 PF09334.9 tRNA-synt_1g Family 166 390 391 229.2 6.4e-68 1 CL0039 ############################################################################################### ############# Pfam MMSYN1_0012 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0025 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:08 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0025.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0025 20 70 19 70 PF01084.18 Ribosomal_S18 Family 2 52 52 93.6 5.4e-27 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0025 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0026 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:13 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0026.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0026 1 99 1 99 PF00436.23 SSB Domain 1 104 104 88.7 2e-25 1 CL0021 ############################################################################################### ############# Pfam MMSYN1_0026 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0027 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:45 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0027.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0027 4 89 4 90 PF01250.15 Ribosomal_S6 Domain 1 89 90 68.5 4e-19 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0027 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0029 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:57 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0029.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0029 3 173 2 193 PF02525.15 Flavodoxin_2 Domain 2 180 198 95.8 2.4e-27 1 CL0042 ############################################################################################### ############# Pfam MMSYN1_0029 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0030 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:53 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0030.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0030 131 276 131 277 PF00005.25 ABC_tran Domain 1 136 137 108.2 4e-31 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0030 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0033 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:15 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0033.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0033 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0034 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:18 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0034.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0034 663 779 660 780 PF02687.19 FtsX Family 4 118 121 41.2 1.3e-10 1 CL0404 MMSYN1_0034 1662 1780 1661 1780 PF02687.19 FtsX Family 2 121 121 46.8 2.4e-12 1 CL0404 ############################################################################################### ############# Pfam MMSYN1_0034 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0039 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:52 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0039.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0039 206 336 206 337 PF00004.27 AAA Domain 1 131 132 145.3 1.2e-42 1 CL0023 MMSYN1_0039 399 601 397 603 PF01434.16 Peptidase_M41 Family 3 209 211 231.3 8.6e-69 1 CL0126 ############################################################################################### ############# Pfam MMSYN1_0039 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0040 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:26 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0040.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0040 11 189 11 190 PF01171.18 ATP_bind_3 Family 1 181 182 172.7 5.9e-51 1 CL0039 ############################################################################################### ############# Pfam MMSYN1_0040 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0042 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:04 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0042.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0042 26 80 4 81 PF01418.15 HTH_6 Domain 23 76 77 33.1 3.7e-08 1 CL0123 ############################################################################################### ############# Pfam MMSYN1_0042 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0043 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:30 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0043.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0043 39 169 38 225 PF13847.4 Methyltransf_31 Domain 2 113 152 59.3 3.4e-16 1 CL0063 ############################################################################################### ############# Pfam MMSYN1_0043 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0044 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:06 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0044.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0044 3 157 2 159 PF13177.4 DNA_pol3_delta2 Domain 2 161 163 85.2 3.8e-24 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0044 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0045 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:06 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0045.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0045 5 195 5 196 PF02223.15 Thymidylate_kin Domain 1 184 185 186.2 4e-55 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0045 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0046 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:52 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0046.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0046 39 76 37 76 PF02132.13 RecR Family 3 40 40 35.6 4.6e-09 1 No_clan MMSYN1_0046 79 167 78 167 PF13662.4 Toprim_4 Domain 2 89 89 60.8 1.2e-16 1 CL0413 ############################################################################################### ############# Pfam MMSYN1_0046 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0047 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:11 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0047.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0047 23 180 22 181 PF13177.4 DNA_pol3_delta2 Domain 2 162 163 156.4 4.6e-46 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0047 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0054 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:40 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0054.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0054 2 123 1 127 PF00578.19 AhpC-TSA Domain 6 119 124 82.8 1.6e-23 1 CL0172 ############################################################################################### ############# Pfam MMSYN1_0054 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0060 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:36 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0060.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0060 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0061 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:54 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0061.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0061 1 112 1 112 PF02403.20 Seryl_tRNA_N Domain 1 108 108 70.5 1.1e-19 1 CL0298 MMSYN1_0061 225 399 218 399 PF00587.23 tRNA-synt_2b Domain 10 179 179 129.4 1.3e-37 1 CL0040 ############################################################################################### ############# Pfam MMSYN1_0061 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0063 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:39 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0063.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0063 15 313 12 323 PF01207.15 Dus Family 3 300 310 324.3 6.2e-97 1 CL0036 ############################################################################################### ############# Pfam MMSYN1_0063 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0064 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:39 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0064.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0064 63 141 63 141 PF01336.23 tRNA_anti-codon Domain 1 76 76 44.5 1.1e-11 1 CL0021 MMSYN1_0064 159 496 157 497 PF00152.18 tRNA-synt_2 Domain 3 313 314 253.2 2.7e-75 1 CL0040 ############################################################################################### ############# Pfam MMSYN1_0064 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0065 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:33 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0065.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0065 6 101 4 102 PF00085.18 Thioredoxin Domain 3 101 104 93.8 4.7e-27 1 CL0172 ############################################################################################### ############# Pfam MMSYN1_0065 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0066 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:44 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0066.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0066 8 272 8 272 PF08282.10 Hydrolase_3 Domain 1 255 255 158.0 3.2e-46 1 CL0137 ############################################################################################### ############# Pfam MMSYN1_0066 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0076 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:29 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0076.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0076 18 96 18 96 PF01336.23 tRNA_anti-codon Domain 1 76 76 37.7 1.4e-09 1 CL0021 MMSYN1_0076 113 448 111 449 PF00152.18 tRNA-synt_2 Domain 3 313 314 287.5 1e-85 1 CL0040 ############################################################################################### ############# Pfam MMSYN1_0076 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0077 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:35 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0077.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0077 8 273 8 273 PF08282.10 Hydrolase_3 Domain 1 255 255 161.9 2e-47 1 CL0137 ############################################################################################### ############# Pfam MMSYN1_0077 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0079 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:46 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0079.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0079 22 306 22 307 PF00814.23 Peptidase_M22 Family 1 270 271 285.2 5.5e-85 1 CL0108 ############################################################################################### ############# Pfam MMSYN1_0079 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0080 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:23 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0080.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0080 9 66 9 68 PF09954.7 DUF2188 Domain 1 60 62 81.3 3.8e-23 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0080 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0081 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:25 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0081.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0081 6 120 6 120 PF10396.7 TrmE_N Family 1 113 113 107.7 3.4e-31 1 CL0289 MMSYN1_0081 123 449 123 449 PF12631.5 MnmE_helical Family 1 206 206 136.1 1.6e-39 1 No_clan MMSYN1_0081 220 332 219 332 PF01926.21 MMR_HSR1 Family 2 114 114 88.3 3.2e-25 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0081 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0082 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:31 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0082.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0082 2 80 2 81 PF01649.16 Ribosomal_S20p Family 1 79 82 81.5 4.6e-23 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0082 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0094 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:41 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0094.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0094 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0095 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:47 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0095.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0095 4 373 1 374 PF07517.12 SecA_DEAD Domain 9 289 290 380.5 4.6e-114 1 CL0023 MMSYN1_0095 224 329 221 330 PF01043.18 SecA_PP_bind Domain 4 110 111 105.4 2.2e-30 1 No_clan MMSYN1_0095 410 522 402 522 PF00271.29 Helicase_C Family 9 111 111 23.0 7e-05 1 CL0023 MMSYN1_0095 558 767 557 768 PF07516.11 SecA_SW Family 2 198 199 150.5 5.4e-44 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0095 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0097 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:01 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0097.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0097 9 177 8 178 PF02739.14 5_3_exonuc_N Domain 2 158 159 144.7 1.9e-42 1 CL0280 MMSYN1_0097 180 260 179 271 PF01367.18 5_3_exonuc Domain 2 83 97 66.9 1.6e-18 1 CL0464 ############################################################################################### ############# Pfam MMSYN1_0097 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0105 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:02 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0105.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0105 8 57 8 59 PF02609.14 Exonuc_VII_S Family 1 50 52 35.5 6.8e-09 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0105 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0106 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:01 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0106.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0106 5 100 5 101 PF13742.4 tRNA_anti_2 Domain 1 94 95 92.5 1.3e-26 1 CL0021 MMSYN1_0106 124 459 124 460 PF02601.13 Exonuc_VII_L Family 1 303 304 290.9 1.2e-86 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0106 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0107 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:41 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0107.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0107 9 132 8 132 PF01029.16 NusB Domain 2 134 134 82.6 2.6e-23 1 CL0633 ############################################################################################### ############# Pfam MMSYN1_0107 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0108 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:46 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0108.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0108 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0109 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:16 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0109.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0109 73 240 23 241 PF01261.22 AP_endonuc_2 Domain 46 209 210 101.4 4.2e-29 1 CL0036 ############################################################################################### ############# Pfam MMSYN1_0109 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0113 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:13 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0113.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0113 22 252 19 252 PF13641.4 Glyco_tranf_2_3 Domain 3 231 231 83.1 2.4e-23 1 CL0110 ############################################################################################### ############# Pfam MMSYN1_0113 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0114 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:27 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0114.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0114 8 140 8 167 PF00535.24 Glycos_transf_2 Family 1 131 170 67.1 1.5e-18 1 CL0110 ############################################################################################### ############# Pfam MMSYN1_0114 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0115 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:02 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0115.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0115 5 265 5 269 PF00483.21 NTP_transferase Family 1 244 248 109.7 1.6e-31 1 CL0110 ############################################################################################### ############# Pfam MMSYN1_0115 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0116 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:17 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0116.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0116 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0117 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:43 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0117.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0117 12 236 12 236 PF02660.13 G3P_acyltransf Family 1 163 163 155.9 8.1e-46 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0117 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0126 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:24 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0126.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0126 4 324 2 324 PF00749.19 tRNA-synt_1c Domain 3 314 314 372.0 1.6e-111 1 CL0039 ############################################################################################### ############# Pfam MMSYN1_0126 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0127 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:44 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0127.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0127 53 137 53 171 PF01966.20 HD Family 1 93 122 45.1 9.4e-12 1 CL0237 ############################################################################################### ############# Pfam MMSYN1_0127 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0128 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:37 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0128.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0128 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0129 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:14 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0129.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0129 3 267 3 267 PF06418.12 CTP_synth_N Domain 1 266 266 402.8 5.5e-121 1 CL0023 MMSYN1_0129 302 526 301 526 PF00117.26 GATase Domain 2 190 190 170.5 3e-50 1 CL0014 ############################################################################################### ############# Pfam MMSYN1_0129 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0131 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:21 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0131.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0131 10 295 10 295 PF01116.18 F_bP_aldolase Domain 1 280 280 312.6 2.2e-93 1 CL0036 ############################################################################################### ############# Pfam MMSYN1_0131 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0132 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:35 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0132.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0132 108 236 107 237 PF00004.27 AAA Domain 2 131 132 87.2 1.1e-24 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0132 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0133 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:23 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0133.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0133 199 543 196 543 PF00082.20 Peptidase_S8 Domain 5 298 298 90.3 1.1e-25 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0133 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0137 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:47 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0137.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0137 3 68 2 68 PF01197.16 Ribosomal_L31 Family 2 67 67 73.3 1.2e-20 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0137 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0138 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:19 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0138.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0138 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0139 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:15 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0139.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0139 19 155 19 156 PF01368.18 DHH Family 1 102 103 35.9 6e-09 1 No_clan MMSYN1_0139 252 310 249 310 PF02272.17 DHHA1 Family 2 70 70 32.7 5.1e-08 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0139 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0140 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:48 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0140.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0140 18 202 18 202 PF00265.16 TK Family 1 177 177 172.6 6.4e-51 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0140 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0141 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:15 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0141.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0141 13 206 12 206 PF03462.16 PCRF Domain 2 192 192 223.9 1.4e-66 1 No_clan MMSYN1_0141 214 323 213 323 PF00472.18 RF-1 Family 2 116 116 140.7 1.7e-41 1 CL0337 ############################################################################################### ############# Pfam MMSYN1_0141 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0142 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:50 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0142.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0142 108 193 93 203 PF05175.12 MTS Domain 29 111 169 48.3 7.1e-13 1 CL0063 ############################################################################################### ############# Pfam MMSYN1_0142 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0143 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:42 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0143.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0143 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0144 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:35 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0144.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0144 12 162 12 165 PF01300.16 Sua5_yciO_yrdC Family 1 167 179 61.7 5.4e-17 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0144 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0145 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:05 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0145.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0145 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0146 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:23 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0146.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0146 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0147 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:32 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0147.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0147 44 85 42 85 PF13396.4 PLDc_N Domain 2 42 42 31.3 1.3e-07 1 No_clan MMSYN1_0147 159 298 157 300 PF13091.4 PLDc_2 Domain 3 131 133 44.2 1.5e-11 1 CL0479 MMSYN1_0147 350 476 349 478 PF13091.4 PLDc_2 Domain 2 132 133 95.1 2.7e-27 1 CL0479 ############################################################################################### ############# Pfam MMSYN1_0147 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0148 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:50 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0148.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0148 3 136 2 136 PF00164.23 Ribosom_S12_S23 Family 2 135 135 132.2 8e-39 1 CL0021 ############################################################################################### ############# Pfam MMSYN1_0148 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0149 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:50 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0149.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0149 2 148 1 148 PF00177.19 Ribosomal_S7 Domain 3 149 149 205.9 1.9e-61 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0149 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0150 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:42 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0150.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0150 9 280 8 280 PF00009.25 GTP_EFTU Domain 2 194 194 227.9 6.9e-68 1 CL0023 MMSYN1_0150 321 388 321 388 PF03144.23 GTP_EFTU_D2 Domain 1 74 74 56.4 2.7e-15 1 CL0575 MMSYN1_0150 401 474 401 475 PF14492.4 EFG_II Domain 1 74 75 114.7 1.4e-33 1 CL0437 MMSYN1_0150 476 592 476 594 PF03764.16 EFG_IV Domain 1 119 121 133.7 2.4e-39 1 CL0329 MMSYN1_0150 597 682 596 683 PF00679.22 EFG_C Domain 2 88 89 101.2 2.2e-29 1 CL0437 ############################################################################################### ############# Pfam MMSYN1_0150 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0151 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:03 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0151.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0151 11 201 10 202 PF00009.25 GTP_EFTU Domain 2 193 194 200.3 2e-59 1 CL0023 MMSYN1_0151 225 294 225 295 PF03144.23 GTP_EFTU_D2 Domain 1 73 74 64.5 7.6e-18 1 CL0575 MMSYN1_0151 299 393 299 394 PF03143.15 GTP_EFTU_D3 Domain 1 110 111 102.2 1.7e-29 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0151 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0154 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:16 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0154.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0154 143 445 143 446 PF00883.19 Peptidase_M17 Domain 1 309 310 349.8 1.2e-104 1 CL0035 ############################################################################################### ############# Pfam MMSYN1_0154 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0163 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:42 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0163.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0163 8 565 8 566 PF01411.17 tRNA-synt_2c Family 1 551 552 619.0 6.2e-186 1 CL0040 MMSYN1_0163 664 706 664 707 PF07973.12 tRNA_SAD Domain 1 43 44 59.4 2.4e-16 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0163 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0164 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:53 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0164.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0164 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0165 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:40 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0165.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0165 218 410 218 411 PF00528.20 BPD_transp_1 Family 1 184 185 80.6 1.1e-22 1 CL0404 ############################################################################################### ############# Pfam MMSYN1_0165 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0166 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:26 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0166.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0166 149 333 145 336 PF00528.20 BPD_transp_1 Family 1 182 185 58.5 6.4e-16 1 CL0404 ############################################################################################### ############# Pfam MMSYN1_0166 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0167 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:41 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0167.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0167 26 128 25 254 PF00005.25 ABC_tran Domain 2 80 137 36.1 7.4e-09 1 CL0023 MMSYN1_0167 302 402 293 403 PF00005.25 ABC_tran Domain 52 136 137 50.2 3.4e-13 1 CL0023 MMSYN1_0167 454 515 454 517 PF08352.10 oligo_HPY Family 1 62 65 41.4 1.4e-10 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0167 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0168 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:07 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0168.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0168 30 166 29 220 PF00005.25 ABC_tran Domain 2 80 137 41.6 1.5e-10 1 CL0023 MMSYN1_0168 351 481 306 482 PF00005.25 ABC_tran Domain 49 136 137 47.0 3.3e-12 1 CL0023 MMSYN1_0168 533 565 533 581 PF08352.10 oligo_HPY Family 1 33 65 27.4 3.3e-06 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0168 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0169 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:45 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0169.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0169 85 448 84 451 PF00496.20 SBP_bac_5 Domain 2 222 377 42.5 3.7e-11 1 CL0177 ############################################################################################### ############# Pfam MMSYN1_0169 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0195 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:54 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0195.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0195 75 243 1 256 PF00528.20 BPD_transp_1 Family 3 174 185 41.1 1.4e-10 1 CL0404 MMSYN1_0195 575 966 570 1012 PF02030.13 Lipoprotein_8 Family 7 340 493 58.1 5.9e-16 1 CL0177 ############################################################################################### ############# Pfam MMSYN1_0195 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0196 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:40 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0196.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0196 137 314 137 320 PF00528.20 BPD_transp_1 Family 1 179 185 67.1 1.5e-18 1 CL0404 ############################################################################################### ############# Pfam MMSYN1_0196 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0197 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:36 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0197.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0197 21 164 21 164 PF00005.25 ABC_tran Domain 1 137 137 119.3 1.5e-34 1 CL0023 MMSYN1_0197 277 345 276 345 PF08402.8 TOBE_2 Family 2 76 76 29.2 6.8e-07 1 CL0021 ############################################################################################### ############# Pfam MMSYN1_0197 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0198 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:13 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0198.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0198 3 109 3 109 PF00453.16 Ribosomal_L20 Family 1 107 107 152.6 3e-45 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0198 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0199 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:09 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0199.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0199 2 62 2 62 PF01632.17 Ribosomal_L35p Family 1 61 61 69.0 3.2e-19 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0199 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0200 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:54 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0200.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0200 17 87 17 87 PF05198.14 IF3_N Domain 1 70 70 75.1 3.5e-21 1 No_clan MMSYN1_0200 94 179 94 179 PF00707.20 IF3_C Domain 1 86 86 103.3 4.6e-30 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0200 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0201 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:34 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0201.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0201 17 187 15 189 PF01327.19 Pep_deformylase Domain 4 156 159 132.4 9.6e-39 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0201 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0202 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:13 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0202.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0202 1 181 1 182 PF03602.13 Cons_hypoth95 Family 1 181 182 141.2 2.4e-41 1 CL0063 ############################################################################################### ############# Pfam MMSYN1_0202 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0203 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:05 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0203.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0203 4 183 3 185 PF00625.19 Guanylate_kin Domain 2 180 182 161.6 1.4e-47 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0203 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0213 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:38 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0213.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0213 4 134 4 134 PF03952.14 Enolase_N Domain 1 131 131 193.5 1.3e-57 1 CL0227 MMSYN1_0213 141 446 139 449 PF00113.20 Enolase_C Domain 3 293 296 408.7 1.2e-122 1 CL0256 ############################################################################################### ############# Pfam MMSYN1_0213 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0214 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:30 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0214.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0214 147 268 144 270 PF01569.19 PAP2 Family 4 134 136 89.2 1.8e-25 1 CL0525 ############################################################################################### ############# Pfam MMSYN1_0214 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0215 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:23 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0215.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0215 4 139 3 140 PF03652.13 RuvX Family 2 134 135 110.5 7.1e-32 1 CL0580 ############################################################################################### ############# Pfam MMSYN1_0215 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0216 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:46 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0216.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0216 23 167 10 169 PF00156.25 Pribosyltran Domain 9 158 159 84.4 5.4e-24 1 CL0533 ############################################################################################### ############# Pfam MMSYN1_0216 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0218 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:44 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0218.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0218 7 256 7 256 PF00370.19 FGGY_N Domain 1 245 245 265.8 3.3e-79 1 CL0108 MMSYN1_0218 266 454 265 455 PF02782.14 FGGY_C Domain 2 197 198 181.5 1.3e-53 1 CL0108 ############################################################################################### ############# Pfam MMSYN1_0218 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0220 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:49 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0220.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0220 4 276 4 278 PF00365.18 PFK Domain 1 277 279 322.6 1.8e-96 1 CL0240 ############################################################################################### ############# Pfam MMSYN1_0220 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0221 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:06 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0221.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0221 10 351 10 356 PF00224.19 PK Family 1 343 348 402.7 9.7e-121 1 CL0151 MMSYN1_0221 378 472 372 476 PF02887.14 PK_C Domain 7 105 117 30.8 2.5e-07 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0221 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0222 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:49 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0222.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0222 323 531 316 532 PF00587.23 tRNA-synt_2b Domain 8 178 179 105.7 2.5e-30 1 CL0040 MMSYN1_0222 544 633 544 634 PF03129.18 HGTP_anticodon Domain 1 93 94 72.8 1.7e-20 1 CL0458 ############################################################################################### ############# Pfam MMSYN1_0222 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0227 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:48 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0227.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0227 4 75 3 75 PF00364.20 Biotin_lipoyl Domain 3 73 73 68.3 3.5e-19 1 CL0105 MMSYN1_0227 131 165 131 166 PF02817.15 E3_binding Family 1 35 36 43.6 2.5e-11 1 No_clan MMSYN1_0227 214 440 211 441 PF00198.21 2-oxoacid_dh Domain 5 232 233 275.8 2.4e-82 1 CL0149 ############################################################################################### ############# Pfam MMSYN1_0227 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0228 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:27 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0228.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0228 4 75 3 75 PF00364.20 Biotin_lipoyl Domain 3 73 73 66.6 1.2e-18 1 CL0105 MMSYN1_0228 164 482 164 483 PF07992.12 Pyr_redox_2 Domain 1 291 292 231.5 1.1e-68 1 CL0063 MMSYN1_0228 509 617 509 618 PF02852.20 Pyr_redox_dim Domain 1 109 110 131.3 1.5e-38 1 CL0608 ############################################################################################### ############# Pfam MMSYN1_0228 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0229 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:11 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0229.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0229 5 317 2 318 PF01515.17 PTA_PTB Family 4 318 319 386.0 1.3e-115 1 CL0270 ############################################################################################### ############# Pfam MMSYN1_0229 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0230 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:29 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0230.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0230 2 385 1 386 PF00871.15 Acetate_kinase Family 2 389 390 491.5 1.3e-147 1 CL0108 ############################################################################################### ############# Pfam MMSYN1_0230 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0233 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:33 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0233.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0233 6 127 6 127 PF05524.11 PEP-utilisers_N Family 1 116 116 103.8 5.5e-30 1 No_clan MMSYN1_0233 153 226 152 226 PF00391.21 PEP-utilizers Family 2 73 73 84.4 2.9e-24 1 No_clan MMSYN1_0233 252 541 251 542 PF02896.16 PEP-utilizers_C Domain 2 293 294 406.8 4.1e-122 1 CL0151 ############################################################################################### ############# Pfam MMSYN1_0233 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0234 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:06 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0234.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0234 9 131 8 133 PF00358.18 PTS_EIIA_1 Domain 2 124 127 160.2 1.7e-47 1 CL0105 ############################################################################################### ############# Pfam MMSYN1_0234 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0235 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:10 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0235.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0235 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0238 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:01 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0238.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0238 3 95 3 95 PF00163.17 Ribosomal_S4 Family 1 84 84 93.9 8.2e-27 1 CL0492 MMSYN1_0238 97 143 96 143 PF01479.23 S4 Domain 2 48 48 67.4 5.6e-19 1 CL0492 ############################################################################################### ############# Pfam MMSYN1_0238 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0239 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:02 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0239.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0239 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0240 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:38 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0240.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0240 36 162 27 163 PF02926.15 THUMP Domain 10 143 144 61.4 9.2e-17 1 No_clan MMSYN1_0240 173 368 173 370 PF02568.12 ThiI Family 1 195 197 223.6 1.5e-66 1 CL0039 ############################################################################################### ############# Pfam MMSYN1_0240 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0247 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:54 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0247.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0247 24 143 24 143 PF01926.21 MMR_HSR1 Family 1 114 114 75.8 2.3e-21 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0247 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0248 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:41 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0248.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0248 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0249 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:58 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0249.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0249 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0250 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:51 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0250.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0250 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0253 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:09 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0253.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0253 5 75 5 75 PF03449.13 GreA_GreB_N Domain 1 71 71 95.3 1.6e-27 1 No_clan MMSYN1_0253 84 157 81 157 PF01272.17 GreA_GreB Domain 3 76 77 67.8 5.1e-19 1 CL0487 ############################################################################################### ############# Pfam MMSYN1_0253 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0254 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:53 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0254.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0254 14 88 13 88 PF01541.22 GIY-YIG Domain 2 78 78 51.3 9.4e-14 1 CL0418 MMSYN1_0254 197 226 194 227 PF02151.17 UVR Family 4 33 36 33.5 2.1e-08 1 No_clan MMSYN1_0254 371 517 367 517 PF08459.9 UvrC_HhH_N Family 5 142 143 110.0 8.9e-32 1 CL0189 MMSYN1_0254 536 568 532 571 PF12826.5 HHH_2 Motif 8 40 64 27.1 3e-06 1 CL0198 ############################################################################################### ############# Pfam MMSYN1_0254 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0257 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:52 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0257.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0257 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0259 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:02 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0259.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0259 33 218 4 242 PF01513.19 NAD_kinase Family 76 266 292 54.6 8.1e-15 1 CL0240 ############################################################################################### ############# Pfam MMSYN1_0259 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0260 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:14 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0260.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0260 19 562 17 563 PF00133.20 tRNA-synt_1 Family 3 601 602 604.5 1.6e-181 1 CL0039 MMSYN1_0260 608 741 607 748 PF08264.11 Anticodon_1 Domain 2 145 152 108.4 2.8e-31 1 CL0258 MMSYN1_0260 808 870 805 870 PF10458.7 Val_tRNA-synt_C Domain 4 66 66 30.6 2.7e-07 1 CL0298 ############################################################################################### ############# Pfam MMSYN1_0260 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0262 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:45 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0262.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0262 6 209 5 209 PF00834.17 Ribul_P_3_epim Domain 2 198 198 204.2 1.2e-60 1 CL0036 ############################################################################################### ############# Pfam MMSYN1_0262 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0263 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:45 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0263.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0263 2 54 2 54 PF16745.3 RsgA_N Domain 1 54 54 32.1 6.2e-08 1 CL0021 MMSYN1_0263 57 231 57 232 PF03193.14 DUF258 Domain 1 166 167 168.1 1.4e-49 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0263 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0264 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:15 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0264.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0264 24 297 24 311 PF00069.23 Pkinase Domain 1 255 264 164.5 2.8e-48 1 CL0016 ############################################################################################### ############# Pfam MMSYN1_0264 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0270 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:03 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0270.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0270 6 131 5 134 PF02367.15 TsaE Domain 2 122 125 104.4 3.6e-30 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0270 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0271 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:33 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0271.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0271 42 129 30 168 PF00814.23 Peptidase_M22 Family 37 134 271 42.8 4.5e-11 1 CL0108 ############################################################################################### ############# Pfam MMSYN1_0271 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0281 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:55 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0281.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0281 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0282 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:48 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0282.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0282 101 271 97 274 PF00587.23 tRNA-synt_2b Domain 5 176 179 61.4 9.6e-17 1 CL0040 MMSYN1_0282 290 379 290 381 PF03129.18 HGTP_anticodon Domain 1 92 94 54.2 1.1e-14 1 CL0458 MMSYN1_0282 408 474 407 474 PF09180.9 ProRS-C_1 Domain 2 69 69 70.5 9.5e-20 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0282 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0283 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:55 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0283.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0283 4 47 4 47 PF01693.14 Cauli_VI Family 1 44 44 74.6 5e-21 1 No_clan MMSYN1_0283 64 197 62 198 PF00075.22 RNase_H Domain 3 142 143 46.7 3.3e-12 1 CL0219 ############################################################################################### ############# Pfam MMSYN1_0283 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0285 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:43 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0285.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0285 5 184 4 184 PF00009.25 GTP_EFTU Domain 2 194 194 182.6 5.4e-54 1 CL0023 MMSYN1_0285 208 278 208 278 PF03144.23 GTP_EFTU_D2 Domain 1 74 74 35.8 7.2e-09 1 CL0575 MMSYN1_0285 402 488 401 490 PF00679.22 EFG_C Domain 2 87 89 77.9 4.2e-22 1 CL0437 MMSYN1_0285 491 597 491 597 PF06421.10 LepA_C Family 1 107 107 148.6 5.3e-44 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0285 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0286 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:59 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0286.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0286 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0287 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:21 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0287.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0287 19 95 19 98 PF01336.23 tRNA_anti-codon Domain 1 73 76 44.1 1.4e-11 1 CL0021 MMSYN1_0287 116 546 115 547 PF00152.18 tRNA-synt_2 Domain 2 313 314 353.1 1.1e-105 1 CL0040 MMSYN1_0287 313 390 304 394 PF02938.12 GAD Domain 11 91 95 26.2 6.3e-06 1 CL0250 ############################################################################################### ############# Pfam MMSYN1_0287 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0288 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:00 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0288.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0288 7 306 7 307 PF13393.4 tRNA-synt_His Domain 1 309 310 135.4 2.3e-39 1 CL0040 ############################################################################################### ############# Pfam MMSYN1_0288 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0289 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:28 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0289.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0289 7 111 6 111 PF02033.16 RBFA Family 2 104 104 78.6 3.7e-22 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0289 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0290 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:44 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0290.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0290 25 176 25 176 PF01509.16 TruB_N Family 1 149 149 165.0 1.3e-48 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0290 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0291 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:48 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0291.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0291 15 145 12 163 PF06574.10 FAD_syn Family 4 137 158 93.0 1.5e-26 1 CL0039 ############################################################################################### ############# Pfam MMSYN1_0291 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0294 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:51 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0294.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0294 9 87 6 87 PF00312.20 Ribosomal_S15 Domain 3 81 81 106.3 6.3e-31 1 CL0600 ############################################################################################### ############# Pfam MMSYN1_0294 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0296 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:31 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0296.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0296 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0297 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:05 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0297.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0297 41 90 40 91 PF04760.13 IF2_N Domain 2 53 54 25.6 6.9e-06 1 CL0123 MMSYN1_0297 123 281 119 284 PF00009.25 GTP_EFTU Domain 5 190 194 125.1 2.1e-36 1 CL0023 MMSYN1_0297 408 512 405 513 PF11987.6 IF-2 Domain 4 104 105 107.3 3.5e-31 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0297 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0298 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:22 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0298.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0298 5 85 4 95 PF01248.24 Ribosomal_L7Ae Domain 2 84 95 31.9 7.2e-08 1 CL0101 ############################################################################################### ############# Pfam MMSYN1_0298 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0299 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:57 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0299.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0299 13 86 13 87 PF04296.11 DUF448 Family 1 73 74 77.1 6.4e-22 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0299 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0300 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:07 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0300.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0300 6 128 6 129 PF08529.9 NusA_N Domain 1 120 121 104.3 4.8e-30 1 No_clan MMSYN1_0300 235 302 235 303 PF13184.4 KH_5 Domain 1 68 69 75.1 3.1e-21 1 CL0007 ############################################################################################### ############# Pfam MMSYN1_0300 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0301 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:58 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0301.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0301 15 156 14 159 PF02576.15 DUF150 Family 2 135 139 57.9 8.9e-16 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0301 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0302 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:01 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0302.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0302 11 193 10 193 PF00881.22 Nitroreductase Domain 2 170 170 63.6 2e-17 1 CL0529 ############################################################################################### ############# Pfam MMSYN1_0302 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0303 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:41 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0303.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0303 5 67 4 79 PF14480.4 DNA_pol3_a_NI Family 2 61 72 30.4 2.7e-07 1 No_clan MMSYN1_0303 90 206 90 208 PF11490.6 DNA_pol3_a_NII Domain 1 115 117 52.4 3.8e-14 1 CL0494 MMSYN1_0303 342 717 342 718 PF02811.17 PHP Family 1 166 167 131.3 3.7e-38 1 CL0034 MMSYN1_0303 436 594 436 594 PF00929.22 RNase_T Family 1 165 165 117.9 5.6e-34 1 CL0219 MMSYN1_0303 856 1273 856 1284 PF07733.10 DNA_pol3_alpha Family 1 415 426 325.2 4.8e-97 1 No_clan MMSYN1_0303 1388 1475 1388 1479 PF14579.4 HHH_6 Domain 1 86 90 30.3 3.5e-07 1 CL0198 ############################################################################################### ############# Pfam MMSYN1_0303 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0304 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:19 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0304.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0304 53 335 20 336 PF01148.18 CTP_transf_1 Family 17 265 266 164.8 2.8e-48 1 CL0234 ############################################################################################### ############# Pfam MMSYN1_0304 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0305 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:28 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0305.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0305 8 113 4 130 PF01321.16 Creatinase_N Domain 6 114 132 52.7 6e-14 1 CL0356 MMSYN1_0305 138 340 137 340 PF00557.22 Peptidase_M24 Domain 2 209 209 233.9 1.3e-69 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0305 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0308 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:12 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0308.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0308 5 284 1 287 PF00579.23 tRNA-synt_1b Family 7 289 293 250.8 1.6e-74 1 CL0039 ############################################################################################### ############# Pfam MMSYN1_0308 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0314 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:29 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0314.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0314 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0315 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:17 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0315.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0315 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0316 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:50 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0316.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0316 6 330 4 333 PF00456.19 Transketolase_N Domain 3 331 334 422.7 7.7e-127 1 CL0254 MMSYN1_0316 349 518 347 519 PF02779.22 Transket_pyr Domain 4 176 178 120.4 6.1e-35 1 CL0254 MMSYN1_0316 539 645 533 646 PF02780.18 Transketolase_C Domain 7 123 124 39.3 4.6e-10 1 CL0591 ############################################################################################### ############# Pfam MMSYN1_0316 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0317 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:05 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0317.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0317 20 79 7 79 PF03672.11 UPF0154 Family 1 60 60 94.3 2.9e-27 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0317 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0325 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:49 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0325.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0325 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0326 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:54 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0326.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0326 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0327 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:22 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0327.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0327 22 254 22 255 PF02616.12 SMC_ScpA Family 1 240 241 67.2 1.8e-18 1 CL0157 ############################################################################################### ############# Pfam MMSYN1_0327 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0328 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:49 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0328.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0328 7 170 7 171 PF04079.14 SMC_ScpB Family 1 159 160 148.2 1.3e-43 1 CL0123 ############################################################################################### ############# Pfam MMSYN1_0328 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0329 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:42 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0329.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0329 4 50 4 50 PF01479.23 S4 Domain 1 48 48 39.9 2.3e-10 1 CL0492 MMSYN1_0329 67 201 66 202 PF00849.20 PseudoU_synth_2 Family 2 160 161 58.3 8.9e-16 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0329 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0330 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:34 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0330.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0330 3 199 3 202 PF01712.17 dNK Domain 1 200 204 142.6 1.3e-41 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0330 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0332 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:20 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0332.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0332 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0338 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:04 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0338.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0338 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0344 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:23 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0344.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0344 8 159 8 160 PF00719.17 Pyrophosphatase Domain 1 159 160 165.6 7.1e-49 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0344 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0345 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:07 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0345.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0345 75 284 74 285 PF12822.5 ECF_trnsprt Family 2 172 173 35.4 9.8e-09 1 CL0315 ############################################################################################### ############# Pfam MMSYN1_0345 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0346 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:35 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0346.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0346 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0347 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:29 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0347.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0347 6 216 6 217 PF02224.16 Cytidylate_kin Domain 1 210 211 219.4 3.8e-65 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0347 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0348 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:30 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0348.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0348 6 120 5 120 PF01926.21 MMR_HSR1 Family 2 114 114 96.2 1.1e-27 1 CL0023 MMSYN1_0348 176 294 176 294 PF01926.21 MMR_HSR1 Family 1 114 114 90.0 9.7e-26 1 CL0023 MMSYN1_0348 352 432 352 432 PF14714.4 KH_dom-like Domain 1 80 80 101.3 2.4e-29 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0348 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0350 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:25 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0350.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0350 1 89 1 90 PF00216.19 Bac_DNA_binding Domain 1 89 90 105.1 1.5e-30 1 CL0548 ############################################################################################### ############# Pfam MMSYN1_0350 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0352 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:39 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0352.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0352 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0353 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:28:57 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0353.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0353 5 66 4 118 PF05103.11 DivIVA Family 2 63 131 36.9 3e-09 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0353 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0359 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:11 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0359.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0359 32 190 4 194 PF12072.6 DUF3552 Family 31 197 201 57.2 1.4e-15 1 No_clan MMSYN1_0359 203 257 199 261 PF00013.27 KH_1 Domain 4 62 66 22.9 5.2e-05 1 CL0007 MMSYN1_0359 326 417 325 418 PF01966.20 HD Family 2 121 122 73.5 1.6e-20 1 CL0237 ############################################################################################### ############# Pfam MMSYN1_0359 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0360 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:17 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0360.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0360 7 84 7 84 PF02881.17 SRP54_N Domain 1 75 75 66.9 1.3e-18 1 No_clan MMSYN1_0360 101 295 101 296 PF00448.20 SRP54 Domain 1 195 196 242.2 3.1e-72 1 CL0023 MMSYN1_0360 327 424 327 425 PF02978.17 SRP_SPB Domain 1 98 99 87.0 9.2e-25 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0360 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0361 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:06 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0361.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0361 1 154 1 154 PF02590.15 SPOUT_MTase Family 1 154 154 147.4 2.9e-43 1 CL0098 ############################################################################################### ############# Pfam MMSYN1_0361 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0362 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:18 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0362.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0362 8 64 8 64 PF00886.17 Ribosomal_S16 Family 1 60 60 74.1 5.9e-21 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0362 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0363 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:17 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0363.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0363 8 91 7 92 PF01782.16 RimM Domain 2 83 84 45.1 8e-12 1 CL0575 ############################################################################################### ############# Pfam MMSYN1_0363 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0364 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:42 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0364.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0364 23 217 22 217 PF01746.19 tRNA_m1G_MT Family 2 195 195 195.4 7e-58 1 CL0098 ############################################################################################### ############# Pfam MMSYN1_0364 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0365 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:44 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0365.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0365 15 119 11 120 PF01245.18 Ribosomal_L19 Family 6 110 111 147.3 1.3e-43 1 CL0107 ############################################################################################### ############# Pfam MMSYN1_0365 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0366 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:14 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0366.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0366 126 238 125 244 PF01926.21 MMR_HSR1 Family 2 108 114 57.4 1.3e-15 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0366 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0371 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:42 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0371.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0371 52 309 48 315 PF00664.21 ABC_membrane Family 5 255 274 75.7 4.2e-21 1 CL0241 MMSYN1_0371 397 546 396 546 PF00005.25 ABC_tran Domain 2 137 137 106.0 2e-30 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0371 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0372 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:18 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0372.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0372 49 307 46 330 PF00664.21 ABC_membrane Family 4 255 274 64.4 1.1e-17 1 CL0241 MMSYN1_0372 397 542 394 542 PF00005.25 ABC_tran Domain 6 137 137 101.9 3.6e-29 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0372 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0373 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:10 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0373.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0373 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0375 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:53 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0375.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0375 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0376 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:08 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0376.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0376 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0377 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:28 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0377.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0377 4 158 4 158 PF01018.20 GTP1_OBG Domain 1 155 155 169.7 2.9e-50 1 No_clan MMSYN1_0377 161 285 161 285 PF01926.21 MMR_HSR1 Family 1 114 114 88.9 2.1e-25 1 CL0023 MMSYN1_0377 366 431 362 431 PF09269.9 DUF1967 Domain 4 70 70 53.9 1.1e-14 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0377 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0378 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:04 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0378.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0378 9 236 8 237 PF02540.15 NAD_synthase Domain 2 241 242 227.0 1.6e-67 1 CL0039 ############################################################################################### ############# Pfam MMSYN1_0378 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0379 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:51 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0379.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0379 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0380 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:03 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0380.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0380 7 164 7 165 PF01467.24 CTP_transf_like Domain 1 142 143 77.0 1.5e-21 1 CL0039 MMSYN1_0380 198 308 198 310 PF01966.20 HD Family 1 120 122 39.7 4.4e-10 1 CL0237 ############################################################################################### ############# Pfam MMSYN1_0380 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0381 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:47 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0381.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0381 35 212 3 215 PF01048.18 PNP_UDP_1 Domain 39 230 234 70.2 1.4e-19 1 CL0408 ############################################################################################### ############# Pfam MMSYN1_0381 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0382 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:40 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0382.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0382 3 207 3 212 PF01712.17 dNK Domain 1 197 204 88.3 5.6e-25 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0382 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0387 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:58 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0387.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0387 3 370 3 370 PF03054.14 tRNA_Me_trans Family 1 356 356 448.1 1.6e-134 1 CL0039 ############################################################################################### ############# Pfam MMSYN1_0387 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0388 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:04 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0388.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0388 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0389 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:28 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0389.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0389 177 239 125 276 PF01930.15 Cas_Cas4 Family 53 111 162 23.5 4.5e-05 1 CL0236 MMSYN1_0389 486 633 486 633 PF11074.6 DUF2779 Domain 1 126 126 121.3 2.9e-35 1 CL0219 ############################################################################################### ############# Pfam MMSYN1_0389 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0390 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:50 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0390.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0390 6 174 3 182 PF00551.17 Formyl_trans_N Domain 2 172 181 117.3 5.7e-34 1 No_clan MMSYN1_0390 206 302 206 306 PF02911.16 Formyl_trans_C Domain 1 95 100 84.9 3.2e-24 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0390 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0391 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:43 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0391.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0391 2 59 2 59 PF08207.10 EFP_N Domain 1 58 58 65.0 4.1e-18 1 CL0107 MMSYN1_0391 67 120 67 120 PF01132.18 EFP Domain 1 54 54 62.2 3.2e-17 1 CL0021 MMSYN1_0391 128 183 128 183 PF09285.9 Elong-fact-P_C Domain 1 56 56 82.5 1.2e-23 1 CL0021 ############################################################################################### ############# Pfam MMSYN1_0391 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0392 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:45 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0392.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0392 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0394 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:39 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0394.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0394 5 195 5 330 PF02190.14 LON_substr_bdg Family 1 205 208 28.2 1.4e-06 1 CL0178 MMSYN1_0394 360 496 359 501 PF00004.27 AAA Domain 2 127 132 85.8 3.1e-24 1 CL0023 MMSYN1_0394 577 778 576 780 PF05362.11 Lon_C Domain 2 203 205 287.5 4.5e-86 1 CL0329 ############################################################################################### ############# Pfam MMSYN1_0394 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0398 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:34 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0398.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0398 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0399 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:51 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0399.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0399 647 766 646 767 PF02687.19 FtsX Family 2 120 121 33.1 4.2e-08 1 CL0404 ############################################################################################### ############# Pfam MMSYN1_0399 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0400 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:38 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0400.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0400 2 164 2 165 PF01965.22 DJ-1_PfpI Domain 1 164 165 123.9 4.9e-36 1 CL0014 ############################################################################################### ############# Pfam MMSYN1_0400 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0401 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:10 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0401.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0401 1 115 1 117 PF03412.13 Peptidase_C39 Family 20 131 133 55.6 4.1e-15 1 CL0125 ############################################################################################### ############# Pfam MMSYN1_0401 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0402 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:39 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0402.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0402 17 145 11 146 PF02130.15 UPF0054 Family 7 125 127 123.8 3.3e-36 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0402 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0403 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:26 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0403.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0403 9 123 8 135 PF01926.21 MMR_HSR1 Family 2 113 114 78.5 3.4e-22 1 CL0023 MMSYN1_0403 209 285 209 285 PF07650.15 KH_2 Domain 1 78 78 56.3 1.9e-15 1 CL0007 ############################################################################################### ############# Pfam MMSYN1_0403 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0404 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:23 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0404.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0404 1 81 1 81 PF11967.6 RecO_N Domain 1 80 80 60.0 1.4e-16 1 CL0021 MMSYN1_0404 86 203 85 238 PF02565.13 RecO_C Family 2 120 157 36.3 4.1e-09 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0404 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0405 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:01 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0405.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0405 161 338 149 341 PF00587.23 tRNA-synt_2b Domain 9 176 179 41.5 1.2e-10 1 CL0040 MMSYN1_0405 366 453 366 454 PF03129.18 HGTP_anticodon Domain 1 93 94 67.1 1.1e-18 1 CL0458 ############################################################################################### ############# Pfam MMSYN1_0405 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0406 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:37 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0406.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0406 5 98 4 101 PF01807.18 zf-CHC2 Domain 2 95 98 111.8 9.8e-33 1 CL0167 MMSYN1_0406 125 248 124 249 PF08275.9 Toprim_N Domain 2 127 128 122.5 1e-35 1 No_clan MMSYN1_0406 259 343 259 344 PF13155.4 Toprim_2 Family 1 86 87 49.5 4.2e-13 1 CL0413 ############################################################################################### ############# Pfam MMSYN1_0406 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0407 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:18 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0407.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0407 169 194 169 200 PF00140.18 Sigma70_r1_2 Family 1 26 34 22.6 7.2e-05 1 No_clan MMSYN1_0407 211 280 211 281 PF04542.12 Sigma70_r2 Domain 1 70 71 74.4 4e-21 1 CL0123 MMSYN1_0407 290 368 290 369 PF04539.14 Sigma70_r3 Family 1 77 78 78.1 3.6e-22 1 CL0123 MMSYN1_0407 455 488 452 488 PF04545.14 Sigma70_r4 Domain 17 50 50 40.0 1.9e-10 1 CL0123 ############################################################################################### ############# Pfam MMSYN1_0407 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0408 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:57 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0408.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0408 2 152 2 152 PF12847.5 Methyltransf_18 Domain 1 151 151 162.2 7.2e-48 1 CL0063 ############################################################################################### ############# Pfam MMSYN1_0408 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0409 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:17 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0409.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0409 6 243 5 246 PF01784.16 NIF3 Family 2 244 245 204.1 2.4e-60 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0409 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0410 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:40 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0410.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0410 25 191 25 195 PF00270.27 DEAD Domain 1 172 176 133.8 4.8e-39 1 CL0023 MMSYN1_0410 240 338 229 339 PF00271.29 Helicase_C Family 13 110 111 88.6 3e-25 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0410 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0411 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:12 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0411.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0411 56 248 56 268 PF02588.13 YitT_membrane Family 1 160 207 62.2 3.8e-17 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0411 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0412 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:33 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0412.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0412 513 651 484 666 PF02355.14 SecD_SecF Family 30 170 189 22.8 4.3e-05 1 CL0322 MMSYN1_0412 1088 1182 1081 1186 PF02355.14 SecD_SecF Family 32 126 189 23.9 2e-05 1 CL0322 ############################################################################################### ############# Pfam MMSYN1_0412 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0413 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:47 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0413.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0413 47 148 23 155 PF00156.25 Pribosyltran Domain 28 124 159 52.3 4e-14 1 CL0533 ############################################################################################### ############# Pfam MMSYN1_0413 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0414 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:22 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0414.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0414 41 190 41 191 PF13328.4 HD_4 Family 1 155 156 125.0 1.9e-36 1 CL0237 MMSYN1_0414 252 362 252 363 PF04607.15 RelA_SpoT Family 1 116 117 121.1 2.6e-35 1 CL0260 MMSYN1_0414 409 468 409 468 PF02824.19 TGS Family 1 60 60 66.3 1.6e-18 1 CL0072 MMSYN1_0414 668 746 667 746 PF13291.4 ACT_4 Domain 2 80 80 60.8 1.3e-16 1 CL0070 ############################################################################################### ############# Pfam MMSYN1_0414 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0415 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:26 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0415.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0415 3 974 3 975 PF02463.17 SMC_N Domain 1 219 220 216.2 3.4e-64 1 CL0023 MMSYN1_0415 421 540 419 540 PF06470.11 SMC_hinge Domain 3 117 117 98.8 2.2e-28 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0415 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0416 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:53 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0416.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0416 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0418 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:39 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0418.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0418 16 142 16 146 PF14622.4 Ribonucleas_3_3 Family 1 124 128 113.5 6.4e-33 1 CL0539 MMSYN1_0418 159 226 158 226 PF00035.24 dsrm Domain 2 67 67 44.4 1.9e-11 1 CL0196 ############################################################################################### ############# Pfam MMSYN1_0418 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0419 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:08 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0419.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0419 3 323 2 324 PF02504.13 FA_synthesis Family 2 322 323 291.3 7.3e-87 1 CL0270 ############################################################################################### ############# Pfam MMSYN1_0419 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0420 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:22 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0420.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0420 32 194 32 196 PF02734.15 Dak2 Family 1 172 174 134.7 2.8e-39 1 No_clan MMSYN1_0420 225 547 225 547 PF13684.4 Dak1_2 Domain 1 313 313 294.7 6.5e-88 1 CL0245 ############################################################################################### ############# Pfam MMSYN1_0420 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0421 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:59 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0421.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0421 3 101 1 103 PF03780.11 Asp23 Family 6 106 108 34.7 1.7e-08 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0421 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0422 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:16 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0422.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0422 3 60 3 61 PF00830.17 Ribosomal_L28 Family 1 59 60 67.7 6.6e-19 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0422 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0424 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:21 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0424.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0424 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0425 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:05 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0425.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0425 51 353 8 357 PF12849.5 PBP_like_2 Family 12 278 282 68.2 8.1e-19 1 CL0177 ############################################################################################### ############# Pfam MMSYN1_0425 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0426 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:46 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0426.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0426 117 299 98 311 PF00528.20 BPD_transp_1 Family 17 172 185 42.3 6.1e-11 1 CL0404 MMSYN1_0426 421 616 420 626 PF00528.20 BPD_transp_1 Family 2 175 185 79.2 2.8e-22 1 CL0404 ############################################################################################### ############# Pfam MMSYN1_0426 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0427 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:26 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0427.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0427 39 194 38 194 PF00005.25 ABC_tran Domain 2 137 137 102.8 1.8e-29 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0427 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0428 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:04 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0428.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0428 20 105 11 107 PF01895.17 PhoU Domain 3 87 89 44.4 1.6e-11 1 CL0297 MMSYN1_0428 120 206 120 207 PF01895.17 PhoU Domain 1 88 89 31.0 2.3e-07 1 CL0297 ############################################################################################### ############# Pfam MMSYN1_0428 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0429 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:27 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0429.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0429 108 171 107 171 PF02881.17 SRP54_N Domain 2 75 75 29.6 5.4e-07 1 No_clan MMSYN1_0429 195 397 194 399 PF00448.20 SRP54 Domain 2 194 196 247.3 8.3e-74 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0429 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0430 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:23 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0430.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0430 6 106 6 106 PF04297.12 UPF0122 Family 1 101 101 124.1 2.1e-36 1 CL0123 ############################################################################################### ############# Pfam MMSYN1_0430 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0431 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:20 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0431.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0431 4 252 4 253 PF13277.4 YmdB Domain 1 252 253 318.7 2.2e-95 1 CL0163 ############################################################################################### ############# Pfam MMSYN1_0431 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0432 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:12 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0432.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0432 8 105 7 105 PF00438.18 S-AdoMet_synt_N Domain 2 99 99 135.6 6.7e-40 1 No_clan MMSYN1_0432 117 234 117 234 PF02772.14 S-AdoMet_synt_M Domain 1 118 118 130.8 2.6e-38 1 No_clan MMSYN1_0432 236 373 236 373 PF02773.14 S-AdoMet_synt_C Domain 1 138 138 216.2 1.3e-64 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0432 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0433 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:46 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0433.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0433 2 187 1 199 PF03932.12 CutC Domain 2 188 202 140.5 4.3e-41 1 CL0036 ############################################################################################### ############# Pfam MMSYN1_0433 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0434 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:48 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0434.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0434 4 365 4 366 PF01134.20 GIDA Family 1 391 392 341.4 6.3e-102 1 CL0063 ############################################################################################### ############# Pfam MMSYN1_0434 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0435 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:37 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0435.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0435 3 202 3 210 PF01238.19 PMI_typeI Family 1 235 373 88.7 3.9e-25 1 CL0029 ############################################################################################### ############# Pfam MMSYN1_0435 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0437 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:28 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0437.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0437 168 292 165 293 PF01966.20 HD Family 4 121 122 36.5 4.3e-09 1 CL0237 ############################################################################################### ############# Pfam MMSYN1_0437 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0438 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:56 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0438.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0438 11 106 10 107 PF01230.21 HIT Domain 2 97 98 76.8 1.5e-21 1 CL0265 ############################################################################################### ############# Pfam MMSYN1_0438 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0439 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:34 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0439.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0439 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0440 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:25 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0440.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0440 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0441 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:59 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0441.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0441 22 397 22 397 PF00266.17 Aminotran_5 Domain 1 371 371 381.9 2.6e-114 1 CL0061 ############################################################################################### ############# Pfam MMSYN1_0441 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0442 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:43 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0442.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0442 12 99 9 145 PF01592.14 NifU_N Family 4 94 129 43.9 2.1e-11 1 CL0233 ############################################################################################### ############# Pfam MMSYN1_0442 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0443 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:28 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0443.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0443 3 179 3 179 PF01812.18 5-FTHF_cyc-lig Family 1 187 187 119.3 1.6e-34 1 CL0246 ############################################################################################### ############# Pfam MMSYN1_0443 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0444 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:00 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0444.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0444 7 385 5 385 PF05649.11 Peptidase_M13_N Family 3 374 374 176.3 1.4e-51 1 No_clan MMSYN1_0444 438 628 438 628 PF01431.19 Peptidase_M13 Family 1 205 205 208.4 7.5e-62 1 CL0126 ############################################################################################### ############# Pfam MMSYN1_0444 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0445 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:16 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0445.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0445 66 414 50 424 PF00342.17 PGI Domain 94 459 486 73.4 1.3e-20 1 CL0067 ############################################################################################### ############# Pfam MMSYN1_0445 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0447 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:53 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0447.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0447 7 167 6 167 PF08761.9 dUTPase_2 Domain 2 166 166 164.2 2.6e-48 1 CL0231 ############################################################################################### ############# Pfam MMSYN1_0447 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0448 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:27 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0448.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0448 31 98 31 100 PF08032.10 SpoU_sub_bind Domain 1 74 76 23.7 3.8e-05 1 CL0101 MMSYN1_0448 108 249 106 249 PF00588.17 SpoU_methylase Family 3 142 142 116.9 7e-34 1 CL0098 ############################################################################################### ############# Pfam MMSYN1_0448 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0451 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:09 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0451.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0451 17 465 13 467 PF00171.20 Aldedh Family 8 460 462 456.5 7.2e-137 1 CL0099 ############################################################################################### ############# Pfam MMSYN1_0451 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0452 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:53 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0452.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0452 32 174 32 176 PF02518.24 HATPase_c Domain 1 109 111 75.2 5e-21 1 CL0025 MMSYN1_0452 221 390 221 391 PF00204.23 DNA_gyraseB Domain 1 174 175 177.5 1.5e-52 1 CL0329 MMSYN1_0452 421 530 421 533 PF01751.20 Toprim Family 1 100 103 59.0 3.9e-16 1 CL0413 MMSYN1_0452 563 624 562 624 PF00986.19 DNA_gyraseB_C Family 2 63 63 97.2 4.1e-28 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0452 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0453 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:22 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0453.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0453 31 457 31 466 PF00521.18 DNA_topoisoIV Family 1 418 427 503.1 5.6e-151 1 No_clan MMSYN1_0453 544 593 544 594 PF03989.11 DNA_gyraseA_C Repeat 1 47 48 23.1 3.4e-05 1 No_clan MMSYN1_0453 601 646 601 647 PF03989.11 DNA_gyraseA_C Repeat 1 47 48 21.6 9.6e-05 1 No_clan MMSYN1_0453 654 695 651 697 PF03989.11 DNA_gyraseA_C Repeat 4 46 48 33.9 1.4e-08 1 No_clan MMSYN1_0453 701 744 700 749 PF03989.11 DNA_gyraseA_C Repeat 2 43 48 11.4 0.15 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0453 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0475 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:57 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0475.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0475 7 146 6 146 PF00056.21 Ldh_1_N Family 2 141 141 139.6 6.5e-41 1 CL0063 MMSYN1_0475 149 315 149 317 PF02866.16 Ldh_1_C Domain 1 165 167 103.1 1.4e-29 1 CL0341 ############################################################################################### ############# Pfam MMSYN1_0475 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0478 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:43 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0478.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0478 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0479 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:43 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0479.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0479 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0481 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:17 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0481.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0481 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0482 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:34 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0482.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0482 4 52 3 54 PF01165.18 Ribosomal_S21 Family 2 52 55 36.2 3.2e-09 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0482 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0493 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:55 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0493.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0493 83 444 82 446 PF01546.26 Peptidase_M20 Family 2 205 207 99.6 1.7e-28 1 CL0035 ############################################################################################### ############# Pfam MMSYN1_0493 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0494 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:21 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0494.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0494 30 225 29 226 PF04131.12 NanE Domain 2 190 192 225.9 2.2e-67 1 CL0036 ############################################################################################### ############# Pfam MMSYN1_0494 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0495 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:24 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0495.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0495 7 284 7 287 PF00480.18 ROK Family 1 291 294 118.0 4.9e-34 1 CL0108 ############################################################################################### ############# Pfam MMSYN1_0495 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0499 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:30 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0499.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0499 11 90 11 90 PF01016.17 Ribosomal_L27 Family 1 79 79 119.2 5.3e-35 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0499 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0500 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:42 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0500.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0500 1 80 1 82 PF04327.10 Peptidase_Prp Family 18 88 90 70.5 9.3e-20 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0500 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0501 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:30 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0501.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0501 1 97 1 97 PF00829.19 Ribosomal_L21p Family 1 101 101 114.0 2.9e-33 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0501 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0503 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:24 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0503.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0503 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0504 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:06 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0504.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0504 13 217 13 219 PF00590.18 TP_methylase Domain 1 210 212 71.9 6.4e-20 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0504 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0505 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:39 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0505.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0505 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0511 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:01 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0511.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0511 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0512 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:46 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0512.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0512 85 214 84 215 PF01553.19 Acyltransferase Family 2 133 134 83.2 1.1e-23 1 CL0228 ############################################################################################### ############# Pfam MMSYN1_0512 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0513 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:00 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0513.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0513 5 101 4 103 PF01648.18 ACPS Family 2 112 114 50.8 1.4e-13 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0513 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0515 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:13 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0515.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0515 9 122 8 123 PF00383.21 dCMP_cyt_deam_1 Family 2 100 101 91.8 1.8e-26 1 CL0109 ############################################################################################### ############# Pfam MMSYN1_0515 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0516 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:58 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0516.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0516 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0517 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:24 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0517.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0517 14 62 13 62 PF01479.23 S4 Domain 2 48 48 31.6 9e-08 1 CL0492 MMSYN1_0517 91 245 91 246 PF00849.20 PseudoU_synth_2 Family 1 160 161 118.1 3.6e-34 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0517 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0518 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:03 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0518.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0518 32 176 31 178 PF01252.16 Peptidase_A8 Family 2 128 130 69.7 2.8e-19 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0518 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0519 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:53 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0519.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0519 31 633 28 634 PF00133.20 tRNA-synt_1 Family 4 601 602 611.7 1.1e-183 1 CL0039 MMSYN1_0519 682 826 676 831 PF08264.11 Anticodon_1 Domain 7 147 152 67.4 1.2e-18 1 CL0258 ############################################################################################### ############# Pfam MMSYN1_0519 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0523 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:55 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0523.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0523 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0524 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:22 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0524.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0524 3 307 1 308 PF01795.17 Methyltransf_5 Family 3 308 309 375.0 3.1e-112 1 CL0063 ############################################################################################### ############# Pfam MMSYN1_0524 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0525 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:19 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0525.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0525 1 70 1 71 PF02381.16 MraZ Family 1 71 72 47.1 1.5e-12 1 CL0132 MMSYN1_0525 74 129 72 133 PF02381.16 MraZ Family 3 58 72 48.0 8.3e-13 1 CL0132 ############################################################################################### ############# Pfam MMSYN1_0525 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0526 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:25 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0526.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0526 2 54 2 56 PF01783.21 Ribosomal_L32p Family 1 53 56 88.4 2.5e-25 1 CL0167 ############################################################################################### ############# Pfam MMSYN1_0526 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0528 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:25 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0528.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0528 47 127 46 142 PF01588.18 tRNA_bind Domain 2 81 96 43.1 3.2e-11 1 CL0021 MMSYN1_0528 297 385 236 386 PF03483.15 B3_4 Domain 85 172 174 23.7 2.8e-05 1 CL0383 MMSYN1_0528 408 472 407 472 PF03484.13 B5 Domain 2 67 67 51.7 7.2e-14 1 No_clan MMSYN1_0528 702 794 702 794 PF03147.12 FDX-ACB Domain 1 94 94 51.4 1e-13 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0528 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0529 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:08 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0529.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0529 20 86 20 88 PF02912.16 Phe_tRNA-synt_N Domain 1 67 69 58.2 5.2e-16 1 CL0298 MMSYN1_0529 92 345 92 345 PF01409.18 tRNA-synt_2d Domain 1 245 245 305.9 1.8e-91 1 CL0040 ############################################################################################### ############# Pfam MMSYN1_0529 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0530 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:48 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0530.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0530 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0531 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:09 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0531.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0531 563 680 562 683 PF02687.19 FtsX Family 2 118 121 51.4 8.7e-14 1 CL0404 MMSYN1_0531 1356 1466 1355 1474 PF02687.19 FtsX Family 2 113 121 40.0 2.9e-10 1 CL0404 ############################################################################################### ############# Pfam MMSYN1_0531 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0535 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:08 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0535.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0535 5 85 3 87 PF03485.14 Arg_tRNA_synt_N Domain 3 83 85 36.8 3.8e-09 1 No_clan MMSYN1_0535 96 398 95 425 PF00750.17 tRNA-synt_1d Family 2 297 349 96.9 9.9e-28 1 CL0039 MMSYN1_0535 437 554 436 554 PF05746.13 DALR_1 Domain 2 119 119 97.0 7.5e-28 1 CL0258 ############################################################################################### ############# Pfam MMSYN1_0535 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0536 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:06 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0536.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0536 23 180 20 180 PF01765.17 RRF Domain 4 162 162 179.7 3.6e-53 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0536 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0537 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:41 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0537.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0537 6 215 6 216 PF00696.26 AA_kinase Family 1 240 241 78.2 6.3e-22 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0537 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0539 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:51 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0539.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0539 71 277 70 277 PF00889.17 EF_TS Family 2 208 208 205.0 9e-61 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0539 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0540 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:51 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0540.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0540 12 225 10 225 PF00318.18 Ribosomal_S2 Family 3 215 215 287.6 3.8e-86 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0540 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0541 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:34 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0541.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0541 5 66 5 66 PF00226.29 DnaJ Domain 1 63 63 82.9 1.2e-23 1 CL0392 MMSYN1_0541 126 344 125 344 PF01556.16 DnaJ_C Domain 2 146 146 103.8 7.8e-30 1 No_clan MMSYN1_0541 152 216 152 216 PF00684.17 DnaJ_CXXCXGXG Domain 1 67 67 51.7 7.5e-14 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0541 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0542 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:18 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0542.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0542 6 76 6 82 PF00012.18 HSP70 Family 1 72 599 81.8 2.8e-23 1 CL0108 MMSYN1_0542 78 572 75 576 PF00012.18 HSP70 Family 100 595 599 683.2 2.2e-205 1 CL0108 ############################################################################################### ############# Pfam MMSYN1_0542 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0543 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:33 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0543.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0543 38 200 1 200 PF01025.17 GrpE Family 9 166 166 106.0 1.4e-30 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0543 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0544 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:36 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0544.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0544 105 324 105 324 PF01628.19 HrcA Family 1 219 220 103.6 1.3e-29 1 CL0161 ############################################################################################### ############# Pfam MMSYN1_0544 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0545 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:19 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0545.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0545 55 191 54 195 PF00004.27 AAA Domain 2 128 132 54.8 1.2e-14 1 CL0023 MMSYN1_0545 448 610 448 610 PF07724.12 AAA_2 Domain 1 171 171 184.9 1.1e-54 1 CL0023 MMSYN1_0545 616 694 616 697 PF10431.7 ClpB_D2-small Domain 1 78 81 72.6 1.9e-20 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0545 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0599 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:49 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0599.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0599 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0600 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:18 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0600.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0600 71 217 68 224 PF00753.25 Lactamase_B Domain 4 151 197 67.3 1.6e-18 1 CL0381 MMSYN1_0600 415 456 413 469 PF07521.10 RMMBL Motif 10 51 62 32.1 7.1e-08 1 CL0398 ############################################################################################### ############# Pfam MMSYN1_0600 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0601 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:27 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0601.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0601 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0606 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:57 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0606.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0606 9 393 9 393 PF00162.17 PGK Domain 1 379 379 506.5 3.8e-152 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0606 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0607 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:55 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0607.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0607 4 103 3 103 PF00044.22 Gp_dh_N Domain 2 101 101 120.6 2.7e-35 1 CL0063 MMSYN1_0607 156 318 156 318 PF02800.18 Gp_dh_C Domain 1 158 158 198.7 3.6e-59 1 CL0139 ############################################################################################### ############# Pfam MMSYN1_0607 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0608 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:10 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0608.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0608 129 259 113 270 PF01695.15 IstB_IS21 Domain 27 153 178 52.0 6.1e-14 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0608 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0609 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:27 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0609.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0609 298 352 292 354 PF07261.9 DnaB_2 Family 20 72 74 25.3 8.5e-06 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0609 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0611 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:29 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0611.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0611 4 178 4 179 PF02739.14 5_3_exonuc_N Domain 1 158 159 160.1 3.5e-47 1 CL0280 MMSYN1_0611 181 267 180 275 PF01367.18 5_3_exonuc Domain 2 88 97 98.9 1.7e-28 1 CL0464 MMSYN1_0611 524 908 523 909 PF00476.18 DNA_pol_A Family 2 375 376 412.9 1.1e-123 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0611 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0612 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:53 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0612.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0612 10 123 7 288 PF02811.17 PHP Family 5 127 167 32.5 8.8e-08 1 CL0034 MMSYN1_0612 240 666 240 666 PF07733.10 DNA_pol3_alpha Family 1 426 426 486.0 7.7e-146 1 No_clan MMSYN1_0612 739 828 739 829 PF14579.4 HHH_6 Domain 1 89 90 48.8 5.6e-13 1 CL0198 ############################################################################################### ############# Pfam MMSYN1_0612 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0613 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:21 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0613.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0613 33 319 27 320 PF00579.23 tRNA-synt_1b Family 7 292 293 254.9 8.9e-76 1 CL0039 ############################################################################################### ############# Pfam MMSYN1_0613 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0614 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:47 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0614.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0614 33 99 27 112 PF02749.14 QRPTase_N Domain 12 73 88 22.4 8.6e-05 1 CL0105 ############################################################################################### ############# Pfam MMSYN1_0614 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0615 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:16 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0615.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0615 89 182 89 187 PF01588.18 tRNA_bind Domain 1 90 96 61.4 6e-17 1 CL0021 ############################################################################################### ############# Pfam MMSYN1_0615 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0616 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:11 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0616.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0616 5 275 5 279 PF02645.14 DegV Family 1 276 280 191.0 2.3e-56 1 CL0245 ############################################################################################### ############# Pfam MMSYN1_0616 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0617 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:36 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0617.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0617 2 282 2 283 PF02645.14 DegV Family 1 279 280 132.7 1.4e-38 1 CL0245 ############################################################################################### ############# Pfam MMSYN1_0617 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0620 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:49 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0620.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0620 23 140 21 142 PF01475.17 FUR Family 3 118 120 58.1 8.2e-16 1 CL0123 ############################################################################################### ############# Pfam MMSYN1_0620 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0621 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:43 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0621.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0621 19 67 4 69 PF00550.23 PP-binding Domain 17 65 67 48.3 8.4e-13 1 CL0314 ############################################################################################### ############# Pfam MMSYN1_0621 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0632 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:11 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0632.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0632 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0634 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:14 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0634.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0634 38 171 32 244 PF09334.9 tRNA-synt_1g Family 7 137 391 74.8 5.1e-21 1 CL0039 MMSYN1_0634 222 398 222 399 PF13603.4 tRNA-synt_1_2 Domain 1 184 185 205.2 5.5e-61 1 CL0039 MMSYN1_0634 411 606 386 616 PF00133.20 tRNA-synt_1 Family 415 589 602 69.3 1.9e-19 1 CL0039 MMSYN1_0634 655 768 649 770 PF08264.11 Anticodon_1 Domain 8 150 152 68.2 6.9e-19 1 CL0258 ############################################################################################### ############# Pfam MMSYN1_0634 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0636 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:32 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0636.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0636 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0637 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:27 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0637.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0637 12 132 12 132 PF00380.17 Ribosomal_S9 Family 1 120 120 146.9 3.4e-43 1 CL0329 ############################################################################################### ############# Pfam MMSYN1_0637 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0638 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:34 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0638.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0638 15 139 15 139 PF00572.16 Ribosomal_L13 Family 1 125 125 157.8 1.3e-46 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0638 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0639 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:12 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0639.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0639 368 487 366 488 PF02687.19 FtsX Family 3 119 121 54.5 9.6e-15 1 CL0404 MMSYN1_0639 1255 1370 1254 1372 PF02687.19 FtsX Family 2 119 121 40.2 2.6e-10 1 CL0404 ############################################################################################### ############# Pfam MMSYN1_0639 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0640 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:20 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0640.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0640 146 249 144 249 PF01416.18 PseudoU_synth_1 Domain 3 108 108 36.0 7.1e-09 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0640 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0641 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:30 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0641.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0641 12 99 11 117 PF02361.14 CbiQ Family 2 89 218 27.3 2.3e-06 1 No_clan MMSYN1_0641 156 285 136 288 PF02361.14 CbiQ Family 95 215 218 110.1 1.1e-31 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0641 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0642 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:39 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0642.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0642 41 192 41 193 PF00005.25 ABC_tran Domain 1 136 137 92.4 3.1e-26 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0642 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0643 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:38 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0643.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0643 158 303 157 303 PF00005.25 ABC_tran Domain 2 137 137 106.9 1e-30 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0643 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0644 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:09 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0644.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0644 17 119 17 119 PF01196.17 Ribosomal_L17 Family 1 94 94 117.7 2.8e-34 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0644 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0645 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:34 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0645.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0645 26 227 26 227 PF01193.22 RNA_pol_L Domain 1 69 69 58.5 3e-16 1 CL0509 MMSYN1_0645 62 157 56 185 PF01000.24 RNA_pol_A_bac Domain 16 110 112 73.5 1.5e-20 1 No_clan MMSYN1_0645 248 308 244 309 PF03118.13 RNA_pol_A_CTD Domain 6 66 67 84.7 2.5e-24 1 CL0198 ############################################################################################### ############# Pfam MMSYN1_0645 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0646 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:49 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0646.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0646 19 128 19 128 PF00411.17 Ribosomal_S11 Family 1 110 110 159.1 3.9e-47 1 CL0267 ############################################################################################### ############# Pfam MMSYN1_0646 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0647 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:40 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0647.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0647 3 108 3 108 PF00416.20 Ribosomal_S13 Family 1 128 128 109.4 1.4e-31 1 CL0303 ############################################################################################### ############# Pfam MMSYN1_0647 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0648 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:07 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0648.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0648 1 37 1 37 PF00444.16 Ribosomal_L36 Domain 1 38 38 66.4 1.7e-18 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0648 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0649 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:51 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0649.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0649 8 70 7 70 PF01176.17 eIF-1a Domain 2 64 64 86.9 5.1e-25 1 CL0021 ############################################################################################### ############# Pfam MMSYN1_0649 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0650 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:01 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0650.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0650 12 240 11 240 PF00557.22 Peptidase_M24 Domain 2 209 209 180.8 2.3e-53 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0650 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0651 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:40 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0651.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0651 5 188 5 189 PF00406.20 ADK Domain 1 150 151 184.1 1.4e-54 1 CL0023 MMSYN1_0651 125 160 125 160 PF05191.12 ADK_lid Domain 1 36 36 46.5 2.5e-12 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0651 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0652 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:46 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0652.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0652 93 449 93 449 PF00344.18 SecY Family 1 307 307 315.8 2.6e-94 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0652 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0653 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:00 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0653.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0653 27 143 27 144 PF00828.17 Ribosomal_L27A Family 1 120 121 122.9 1.1e-35 1 CL0588 ############################################################################################### ############# Pfam MMSYN1_0653 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0654 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:29 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0654.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0654 48 111 48 112 PF00333.18 Ribosomal_S5 Domain 1 64 65 100.2 4.2e-29 1 CL0196 MMSYN1_0654 124 194 123 194 PF03719.13 Ribosomal_S5_C Domain 2 72 72 97.9 1.5e-28 1 CL0329 ############################################################################################### ############# Pfam MMSYN1_0654 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0655 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:31 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0655.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0655 4 116 3 116 PF00861.20 Ribosomal_L18p Family 2 116 116 168.1 7e-50 1 CL0267 ############################################################################################### ############# Pfam MMSYN1_0655 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0656 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:31 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0656.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0656 11 83 11 83 PF00347.21 Ribosomal_L6 Domain 1 76 76 59.5 3.5e-16 1 No_clan MMSYN1_0656 92 165 91 166 PF00347.21 Ribosomal_L6 Domain 2 75 76 78.5 4.2e-22 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0656 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0657 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:03 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0657.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0657 4 129 4 129 PF00410.17 Ribosomal_S8 Domain 1 127 127 169.8 2.1e-50 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0657 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0658 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:33 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0658.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0658 9 60 9 60 PF00253.19 Ribosomal_S14 Family 1 54 54 78.1 2.8e-22 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0658 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0659 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:02 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0659.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0659 26 81 25 81 PF00281.17 Ribosomal_L5 Domain 2 57 57 89.5 1.1e-25 1 No_clan MMSYN1_0659 86 178 85 178 PF00673.19 Ribosomal_L5_C Domain 2 94 94 138.9 4.2e-41 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0659 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0660 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:38 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0660.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0660 8 38 8 39 PF00467.27 KOW Family 1 31 32 34.7 1e-08 1 CL0107 MMSYN1_0660 42 104 41 104 PF17136.2 ribosomal_L24 Family 3 65 65 73.1 1.6e-20 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0660 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0661 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:47 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0661.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0661 1 122 1 122 PF00238.17 Ribosomal_L14 Domain 1 122 122 159.3 3.6e-47 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0661 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0662 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:59 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0662.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0662 11 77 11 78 PF00366.18 Ribosomal_S17 Domain 1 67 68 107.8 1.9e-31 1 CL0021 ############################################################################################### ############# Pfam MMSYN1_0662 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0663 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:30 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0663.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0663 8 63 8 63 PF00831.21 Ribosomal_L29 Family 2 57 57 62.8 1.9e-17 1 CL0346 ############################################################################################### ############# Pfam MMSYN1_0663 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0664 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:28:55 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0664.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0664 4 132 4 132 PF00252.16 Ribosomal_L16 Family 1 132 132 170.2 1.9e-50 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0664 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0665 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:33 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0665.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0665 38 113 38 114 PF07650.15 KH_2 Domain 1 77 78 59.9 1.4e-16 1 CL0007 MMSYN1_0665 123 205 123 205 PF00189.18 Ribosomal_S3_C Domain 1 83 83 111.7 1.6e-32 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0665 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0666 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:31 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0666.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0666 8 107 7 108 PF00237.17 Ribosomal_L22 Domain 2 101 102 121.6 1.5e-35 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0666 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0667 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:32 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0667.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0667 3 80 3 80 PF00203.19 Ribosomal_S19 Domain 1 81 81 120.5 1.9e-35 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0667 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0668 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:42 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0668.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0668 44 119 44 120 PF00181.21 Ribosomal_L2 Domain 1 76 77 110.9 2e-32 1 CL0021 MMSYN1_0668 127 255 127 255 PF03947.16 Ribosomal_L2_C Domain 1 126 126 183.0 2e-54 1 CL0107 ############################################################################################### ############# Pfam MMSYN1_0668 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0669 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:02 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0669.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0669 6 89 5 90 PF00276.18 Ribosomal_L23 Family 2 85 86 104.8 2.1e-30 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0669 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0670 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:33 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0670.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0670 16 205 16 206 PF00573.20 Ribosomal_L4 Family 1 191 192 225.0 5.9e-67 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0670 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0671 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:48 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0671.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0671 89 178 77 180 PF00297.20 Ribosomal_L3 Family 201 290 369 59.4 2.7e-16 1 CL0575 ############################################################################################### ############# Pfam MMSYN1_0671 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0672 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:03 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0672.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0672 7 101 7 101 PF00338.20 Ribosomal_S10 Family 1 98 98 113.1 5.2e-33 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0672 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0684 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:18 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0684.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0684 3 119 3 119 PF00763.21 THF_DHG_CYH Domain 1 116 116 129.1 8e-38 1 CL0603 MMSYN1_0684 122 280 122 282 PF02882.17 THF_DHG_CYH_C Domain 1 158 160 208.1 4e-62 1 CL0063 ############################################################################################### ############# Pfam MMSYN1_0684 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0685 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:30 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0685.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0685 77 516 63 525 PF02386.14 TrkH Family 57 492 502 177.2 3.9e-52 1 CL0030 ############################################################################################### ############# Pfam MMSYN1_0685 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0686 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:56 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0686.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0686 7 126 7 126 PF02254.16 TrkA_N Domain 1 116 116 60.5 1.6e-16 1 CL0063 MMSYN1_0686 163 225 158 226 PF02080.19 TrkA_C Domain 8 69 70 43.5 1.9e-11 1 CL0582 ############################################################################################### ############# Pfam MMSYN1_0686 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0687 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:58 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0687.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0687 7 287 6 288 PF02934.13 GatB_N Domain 2 272 273 335.9 1.6e-100 1 No_clan MMSYN1_0687 327 475 327 475 PF02637.16 GatB_Yqey Domain 1 148 148 127.8 2.8e-37 1 CL0279 ############################################################################################### ############# Pfam MMSYN1_0687 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0688 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:13 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0688.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0688 36 463 25 466 PF01425.19 Amidase Family 13 448 451 348.5 5.6e-104 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0688 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0689 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:08 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0689.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0689 21 91 21 93 PF02686.13 Glu-tRNAGln Family 1 60 62 50.0 2.5e-13 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0689 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0690 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:14 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0690.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0690 8 314 4 314 PF01653.16 DNA_ligase_aden Domain 5 318 318 398.0 2.4e-119 1 CL0078 MMSYN1_0690 317 390 317 392 PF03120.14 DNA_ligase_OB Domain 1 74 79 91.2 2.6e-26 1 CL0021 MMSYN1_0690 404 427 403 428 PF03119.14 DNA_ligase_ZBD Domain 2 25 27 28.0 1.5e-06 1 No_clan MMSYN1_0690 508 570 507 570 PF12826.5 HHH_2 Motif 2 64 64 82.3 1.7e-23 1 CL0198 MMSYN1_0690 592 663 588 663 PF00533.24 BRCT Family 5 79 79 47.8 1.3e-12 1 CL0459 ############################################################################################### ############# Pfam MMSYN1_0690 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0691 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:59 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0691.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0691 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0692 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:59 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0692.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0692 90 245 90 246 PF00849.20 PseudoU_synth_2 Family 1 160 161 86.0 2.6e-24 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0692 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0693 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:19 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0693.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0693 223 309 220 310 PF02517.14 Abi Family 5 91 92 40.4 2.6e-10 1 CL0472 ############################################################################################### ############# Pfam MMSYN1_0693 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0694 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:03 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0694.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0694 4 80 2 82 PF00381.17 PTS-HPr Domain 3 79 82 91.5 2.6e-26 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0694 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0695 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:17 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0695.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0695 10 276 10 277 PF00580.19 UvrD-helicase Domain 1 314 315 253.5 3.2e-75 1 CL0023 MMSYN1_0695 282 617 282 618 PF13361.4 UvrD_C Domain 1 348 349 201.8 1.7e-59 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0695 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0696 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:26 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0696.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0696 22 136 21 186 PF06271.10 RDD Family 2 129 141 41.5 1.3e-10 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0696 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0697 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:11 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0697.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0697 6 144 4 182 PF00535.24 Glycos_transf_2 Family 3 142 170 40.5 2.2e-10 1 CL0110 ############################################################################################### ############# Pfam MMSYN1_0697 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0706 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:28 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0706.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0706 118 297 117 302 PF00528.20 BPD_transp_1 Family 2 180 185 40.2 2.7e-10 1 CL0404 MMSYN1_0706 422 578 406 582 PF00528.20 BPD_transp_1 Family 17 177 185 27.8 1.7e-06 1 CL0404 ############################################################################################### ############# Pfam MMSYN1_0706 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0707 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:51 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0707.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0707 22 178 22 178 PF00005.25 ABC_tran Domain 1 137 137 106.8 1.1e-30 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0707 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0708 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:30 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0708.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0708 69 457 68 470 PF06646.9 Mycoplasma_p37 Family 2 317 331 170.0 7.2e-50 1 CL0177 ############################################################################################### ############# Pfam MMSYN1_0708 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0710 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:52 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0710.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0710 5 270 5 270 PF08282.10 Hydrolase_3 Domain 1 255 255 178.7 1.6e-52 1 CL0137 ############################################################################################### ############# Pfam MMSYN1_0710 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0726 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:10 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0726.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0726 10 226 7 229 PF01182.18 Glucosamine_iso Domain 8 222 224 67.9 1e-18 1 CL0246 ############################################################################################### ############# Pfam MMSYN1_0726 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0727 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:05 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0727.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0727 4 243 4 244 PF00121.16 TIM Domain 1 242 243 293.1 1.3e-87 1 CL0036 ############################################################################################### ############# Pfam MMSYN1_0727 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0728 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:50 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0728.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0728 9 271 9 271 PF08282.10 Hydrolase_3 Domain 1 255 255 140.9 5.2e-41 1 CL0137 ############################################################################################### ############# Pfam MMSYN1_0728 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0729 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:36 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0729.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0729 6 517 5 518 PF01676.16 Metalloenzyme Family 2 244 245 205.9 5.4e-61 1 CL0088 MMSYN1_0729 84 304 83 305 PF06415.11 iPGM_N Domain 2 214 215 210.8 1.4e-62 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0729 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0730 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:05 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0730.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0730 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0732 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:47 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0732.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0732 8 201 4 210 PF01791.7 DeoC Domain 5 223 235 67.6 1.1e-18 1 CL0036 ############################################################################################### ############# Pfam MMSYN1_0732 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0733 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:41 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0733.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0733 43 184 42 186 PF02878.14 PGM_PMM_I Domain 2 135 138 140.2 3e-41 1 No_clan MMSYN1_0733 208 308 207 313 PF02879.14 PGM_PMM_II Domain 2 99 103 76.1 2.4e-21 1 No_clan MMSYN1_0733 319 446 319 446 PF02880.14 PGM_PMM_III Domain 1 114 114 64.6 8e-18 1 No_clan MMSYN1_0733 489 531 461 553 PF00408.18 PGM_PMM_IV Family 23 54 74 36.8 2.9e-09 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0733 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0747 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:37 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0747.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0747 12 105 11 125 PF01048.18 PNP_UDP_1 Domain 2 96 234 65.7 3.2e-18 1 CL0408 MMSYN1_0747 152 194 135 216 PF01048.18 PNP_UDP_1 Domain 166 208 234 28.7 6.7e-07 1 CL0408 ############################################################################################### ############# Pfam MMSYN1_0747 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0771 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:08 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0771.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0771 17 97 17 97 PF08343.8 RNR_N Family 1 82 82 81.2 3.9e-23 1 No_clan MMSYN1_0771 100 171 98 172 PF00317.19 Ribonuc_red_lgN Domain 3 82 83 27.3 2.4e-06 1 No_clan MMSYN1_0771 176 699 176 700 PF02867.13 Ribonuc_red_lgC Family 1 523 524 445.7 1.8e-133 1 CL0339 ############################################################################################### ############# Pfam MMSYN1_0771 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0772 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:51 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0772.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0772 23 143 23 143 PF07972.9 Flavodoxin_NdrI Domain 1 120 120 156.9 2e-46 1 CL0042 ############################################################################################### ############# Pfam MMSYN1_0772 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0773 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:15 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0773.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0773 29 294 28 300 PF00268.19 Ribonuc_red_sm Domain 2 275 278 240.5 2.2e-71 1 CL0044 ############################################################################################### ############# Pfam MMSYN1_0773 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0774 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:35 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0774.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0774 20 89 19 89 PF03840.12 SecG Family 3 70 70 46.7 2.2e-12 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0774 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0775 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:35 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0775.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0775 64 114 64 119 PF08206.9 OB_RNB Domain 1 48 58 23.6 2.8e-05 1 CL0021 MMSYN1_0775 246 573 241 575 PF00773.17 RNB Domain 4 324 326 345.4 3.1e-103 1 No_clan MMSYN1_0775 623 700 622 702 PF00575.21 S1 Domain 3 72 75 45.8 5.2e-12 1 CL0021 ############################################################################################### ############# Pfam MMSYN1_0775 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0776 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:45 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0776.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0776 6 69 5 69 PF01668.16 SmpB Family 2 65 65 88.7 1.7e-25 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0776 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0777 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:58 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0777.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0777 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0778 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:13 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0778.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0778 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0779 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:15 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0779.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0779 29 418 29 419 PF02378.16 PTS_EIIC Family 1 323 324 231.7 9.6e-69 1 CL0493 MMSYN1_0779 537 569 536 569 PF00367.18 PTS_EIIB Domain 2 34 34 49.3 2.2e-13 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0779 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0787 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:44 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0787.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0787 38 94 32 97 PF00690.24 Cation_ATPase_N Domain 7 65 69 37.1 1.7e-09 1 No_clan MMSYN1_0787 125 390 124 390 PF00122.18 E1-E2_ATPase Family 2 221 221 172.5 6.9e-51 1 No_clan MMSYN1_0787 395 681 395 681 PF00702.24 Hydrolase Domain 1 210 210 55.8 6.9e-15 1 CL0137 MMSYN1_0787 751 931 750 933 PF00689.19 Cation_ATPase_C Family 2 180 182 58.4 6.5e-16 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0787 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0789 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:17 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0789.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0789 3 81 3 82 PF02823.14 ATP-synt_DE_N Domain 1 79 80 67.9 5e-19 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0789 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0790 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:17 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0790.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0790 18 85 18 85 PF02874.21 ATP-synt_ab_N Domain 1 69 69 73.6 1.3e-20 1 CL0275 MMSYN1_0790 141 354 141 354 PF00006.23 ATP-synt_ab Domain 1 213 213 234.8 7.1e-70 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0790 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0791 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:37 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0791.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0791 3 278 3 278 PF00231.17 ATP-synt Domain 1 278 279 261.9 7.9e-78 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0791 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0792 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:14 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0792.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0792 27 92 24 92 PF02874.21 ATP-synt_ab_N Domain 4 69 69 54.5 1.2e-14 1 CL0275 MMSYN1_0792 149 364 149 364 PF00006.23 ATP-synt_ab Domain 1 213 213 244.0 1.1e-72 1 CL0023 MMSYN1_0792 371 497 371 498 PF00306.25 ATP-synt_ab_C Domain 1 125 126 125.7 1.1e-36 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0792 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0793 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:20 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0793.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0793 10 179 8 179 PF00213.16 OSCP Family 4 172 172 106.6 1.4e-30 1 CL0255 ############################################################################################### ############# Pfam MMSYN1_0793 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0794 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:54 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0794.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0794 31 161 30 161 PF00430.16 ATP-synt_B Family 2 132 132 65.9 3.4e-18 1 CL0255 ############################################################################################### ############# Pfam MMSYN1_0794 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0795 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:34 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0795.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0795 35 97 35 97 PF00137.19 ATP-synt_C Family 1 60 60 47.2 1.8e-12 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0795 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0796 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:04 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0796.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0796 24 261 22 261 PF00119.18 ATP-synt_A Domain 2 211 211 132.6 1.7e-38 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0796 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0797 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:23 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0797.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0797 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0798 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:44 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0798.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0798 7 206 5 206 PF14681.4 UPRTase Domain 3 207 207 231.0 8.5e-69 1 CL0533 ############################################################################################### ############# Pfam MMSYN1_0798 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0799 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:07 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0799.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0799 6 378 3 379 PF00464.17 SHMT Domain 5 398 399 550.5 1.5e-165 1 CL0061 ############################################################################################### ############# Pfam MMSYN1_0799 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0800 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:40 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0800.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0800 5 141 5 142 PF02502.16 LacAB_rpiB Family 1 138 139 170.6 1.6e-50 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0800 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0803 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:03 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0803.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0803 8 385 4 385 PF04997.10 RNA_pol_Rpb1_1 Domain 5 312 312 295.4 4.8e-88 1 No_clan MMSYN1_0803 387 437 387 444 PF00623.18 RNA_pol_Rpb1_2 Domain 1 51 166 34.8 1.6e-08 1 No_clan MMSYN1_0803 453 528 430 529 PF00623.18 RNA_pol_Rpb1_2 Domain 90 165 166 96.9 1.3e-27 1 No_clan MMSYN1_0803 533 718 532 718 PF04983.16 RNA_pol_Rpb1_3 Domain 2 158 158 83.5 1.3e-23 1 No_clan MMSYN1_0803 749 816 735 833 PF05000.15 RNA_pol_Rpb1_4 Domain 3 84 108 49.4 3.3e-13 1 No_clan MMSYN1_0803 827 1163 827 1191 PF04998.15 RNA_pol_Rpb1_5 Domain 1 258 267 201.0 2.1e-59 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0803 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0804 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:49 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0804.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0804 169 537 119 537 PF04563.13 RNA_pol_Rpb2_1 Family 93 203 203 52.2 4.7e-14 1 No_clan MMSYN1_0804 213 390 213 401 PF04561.12 RNA_pol_Rpb2_2 Domain 1 172 190 37.7 1.4e-09 1 No_clan MMSYN1_0804 449 491 443 491 PF04561.12 RNA_pol_Rpb2_2 Domain 148 190 190 30.9 1.7e-07 1 No_clan MMSYN1_0804 550 618 550 618 PF04565.14 RNA_pol_Rpb2_3 Domain 1 68 68 104.1 2.8e-30 1 No_clan MMSYN1_0804 628 694 628 694 PF10385.7 RNA_pol_Rpb2_45 Domain 1 65 65 68.9 3e-19 1 No_clan MMSYN1_0804 755 1145 755 1145 PF00562.26 RNA_pol_Rpb2_6 Domain 1 390 390 503.4 4e-151 1 CL0410 MMSYN1_0804 1147 1221 1147 1223 PF04560.18 RNA_pol_Rpb2_7 Domain 1 85 87 86.6 1e-24 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0804 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0805 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:24 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0805.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0805 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0806 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:25 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0806.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0806 4 48 4 52 PF16320.3 Ribosomal_L12_N Domain 1 45 48 49.9 1.7e-13 1 No_clan MMSYN1_0806 56 122 55 122 PF00542.17 Ribosomal_L12 Domain 2 67 67 85.6 1.9e-24 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0806 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0807 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:33 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0807.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0807 8 104 6 104 PF00466.18 Ribosomal_L10 Family 3 100 100 80.3 8.1e-23 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0807 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0809 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:20 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0809.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0809 31 220 29 220 PF00687.19 Ribosomal_L1 Domain 2 205 205 182.2 9e-54 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0809 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0810 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:00 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0810.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0810 10 62 9 62 PF03946.12 Ribosomal_L11_N Domain 2 58 58 56.6 1.5e-15 1 No_clan MMSYN1_0810 67 135 67 135 PF00298.17 Ribosomal_L11 Domain 1 70 70 81.2 5.1e-23 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0810 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0813 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:10 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0813.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0813 4 258 3 258 PF01370.19 Epimerase Family 2 241 241 161.0 3e-47 1 CL0063 ############################################################################################### ############# Pfam MMSYN1_0813 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0814 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:45 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0814.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0814 22 83 19 83 PF13450.4 NAD_binding_8 Domain 8 68 68 45.3 6.7e-12 1 CL0063 MMSYN1_0814 158 372 157 372 PF03275.11 GLF Family 2 204 204 220.0 2.4e-65 1 CL0063 ############################################################################################### ############# Pfam MMSYN1_0814 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0817 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:02 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0817.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0817 19 102 18 103 PF10298.7 WhiA_N Domain 2 85 86 64.6 5.6e-18 1 CL0324 MMSYN1_0817 127 219 126 220 PF14527.4 LAGLIDADG_WhiA Domain 2 92 93 74.5 4.8e-21 1 CL0324 MMSYN1_0817 223 308 223 309 PF02650.12 HTH_WhiA Domain 1 83 84 86.0 1.5e-24 1 CL0123 ############################################################################################### ############# Pfam MMSYN1_0817 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0818 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:59 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0818.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0818 71 296 63 313 PF01790.16 LGT Family 11 181 242 101.7 3.3e-29 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0818 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0819 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:13 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0819.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0819 9 282 9 295 PF07992.12 Pyr_redox_2 Domain 1 280 292 154.5 3.2e-45 1 CL0063 ############################################################################################### ############# Pfam MMSYN1_0819 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0820 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:54 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0820.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0820 25 258 17 269 PF01790.16 LGT Family 11 182 242 99.9 1.2e-28 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0820 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0821 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:06 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0821.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0821 5 127 4 129 PF02603.14 Hpr_kinase_N Family 2 122 125 82.5 2.1e-23 1 CL0365 MMSYN1_0821 134 292 133 304 PF07475.10 Hpr_kinase_C Domain 3 160 171 169.1 5.4e-50 1 CL0374 ############################################################################################### ############# Pfam MMSYN1_0821 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0822 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:45 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0822.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0822 41 194 41 197 PF12822.5 ECF_trnsprt Family 1 170 173 33.4 3.9e-08 1 CL0315 ############################################################################################### ############# Pfam MMSYN1_0822 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0823 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:44 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0823.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0823 40 218 40 255 PF08245.10 Mur_ligase_M Domain 1 143 192 31.8 1.2e-07 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0823 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0824 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:12 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0824.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0824 627 863 627 864 PF00005.25 ABC_tran Domain 1 136 137 39.1 9e-10 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0824 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0825 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:12 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0825.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0825 15 95 13 159 PF04851.13 ResIII Family 3 85 171 42.7 5.3e-11 1 CL0023 MMSYN1_0825 437 547 433 549 PF00271.29 Helicase_C Family 5 109 111 72.8 2.5e-20 1 CL0023 MMSYN1_0825 555 596 555 597 PF12344.6 UvrB Family 1 42 43 74.8 3e-21 1 No_clan MMSYN1_0825 629 661 626 661 PF02151.17 UVR Family 4 36 36 37.6 1.1e-09 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0825 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0826 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:47 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0826.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0826 2 175 2 176 PF06144.11 DNA_pol3_delta Family 1 173 174 69.0 3.9e-19 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0826 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0827 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:28:47 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0827.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0827 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0830 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:07 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0830.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0830 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0831 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:28 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0831.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0831 7 122 6 122 PF13793.4 Pribosyltran_N Domain 2 116 116 150.3 1.8e-44 1 No_clan MMSYN1_0831 216 324 203 326 PF14572.4 Pribosyl_synth Domain 78 183 185 61.5 9.6e-17 1 CL0533 ############################################################################################### ############# Pfam MMSYN1_0831 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0832 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:25 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0832.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0832 3 186 3 186 PF01195.17 Pept_tRNA_hydro Domain 1 160 160 182.8 4.3e-54 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0832 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0833 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:50 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0833.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0833 1 45 1 47 PF01281.17 Ribosomal_L9_N Domain 1 45 47 70.6 5.2e-20 1 No_clan MMSYN1_0833 64 145 63 146 PF03948.12 Ribosomal_L9_C Domain 2 85 86 60.7 1.3e-16 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0833 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0834 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:35 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0834.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0834 11 107 7 108 PF00772.19 DnaB Domain 6 102 103 73.4 1.1e-20 1 No_clan MMSYN1_0834 182 436 182 437 PF03796.13 DnaB_C Domain 1 255 256 333.6 5.9e-100 1 CL0023 ############################################################################################### ############# Pfam MMSYN1_0834 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0835 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:09 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0835.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0835 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0836 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:19 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0836.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0836 53 214 53 216 PF07155.10 ECF-ribofla_trS Family 1 169 172 38.3 1.1e-09 1 CL0315 ############################################################################################### ############# Pfam MMSYN1_0836 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0837 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:12 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0837.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0837 12 309 10 310 PF01406.17 tRNA-synt_1e Family 3 300 301 336.9 1e-100 1 CL0039 MMSYN1_0837 344 397 344 402 PF09190.9 DALR_2 Domain 1 54 63 23.6 4.8e-05 1 CL0258 ############################################################################################### ############# Pfam MMSYN1_0837 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0838 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:31 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0838.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0838 5 76 5 77 PF08032.10 SpoU_sub_bind Domain 1 75 76 57.2 1.4e-15 1 CL0101 MMSYN1_0838 93 234 92 234 PF00588.17 SpoU_methylase Family 2 142 142 122.3 1.5e-35 1 CL0098 ############################################################################################### ############# Pfam MMSYN1_0838 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0839 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:57 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0839.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0839 59 104 48 104 PF00584.18 SecE Family 9 54 54 30.6 2.2e-07 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0839 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0840 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:10 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0840.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0840 19 121 18 122 PF02357.17 NusG Domain 2 94 95 70.4 1.3e-19 1 CL0439 ############################################################################################### ############# Pfam MMSYN1_0840 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0851 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:21 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0851.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0851 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0852 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:32 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0852.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0852 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0853 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:52 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0853.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0853 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0859 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:35 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0859.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0859 3 118 3 118 PF01751.20 Toprim Family 1 103 103 73.6 1.1e-20 1 CL0413 MMSYN1_0859 133 559 132 560 PF01131.18 Topoisom_bac Family 2 411 412 280.7 1.8e-83 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0859 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0870 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:01 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0870.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0870 145 579 25 581 PF03606.13 DcuC Family 71 462 465 173.2 6e-51 1 CL0182 ############################################################################################### ############# Pfam MMSYN1_0870 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0872 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:46 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0872.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0872 4 122 4 150 PF01926.21 MMR_HSR1 Family 1 93 114 86.5 1.1e-24 1 CL0023 MMSYN1_0872 280 363 280 363 PF06071.11 YchF-GTPase_C Domain 1 84 84 126.4 3.3e-37 1 CL0072 ############################################################################################### ############# Pfam MMSYN1_0872 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0873 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:57 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0873.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0873 7 61 6 61 PF06107.9 DUF951 Family 2 55 55 59.9 1.5e-16 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0873 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0874 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:58 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0874.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0874 21 197 20 209 PF02527.13 GidB Family 2 177 184 182.2 5.1e-54 1 CL0063 ############################################################################################### ############# Pfam MMSYN1_0874 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0875 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:39 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0875.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0875 7 85 7 85 PF01066.19 CDP-OH_P_transf Family 1 66 66 69.6 2.6e-19 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0875 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0876 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:14 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0876.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0876 8 480 8 491 PF13520.4 AA_permease_2 Family 1 417 425 271.8 8.4e-81 1 CL0062 ############################################################################################### ############# Pfam MMSYN1_0876 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0877 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:21 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0877.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # ############################################################################################### ############# Pfam MMSYN1_0877 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0878 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:15 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0878.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0878 1 451 1 468 PF13520.4 AA_permease_2 Family 9 418 425 269.5 4.2e-80 1 CL0062 ############################################################################################### ############# Pfam MMSYN1_0878 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0879 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:24 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0879.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0879 36 87 26 88 PF00690.24 Cation_ATPase_N Domain 16 68 69 22.2 7.7e-05 1 No_clan MMSYN1_0879 107 350 106 351 PF00122.18 E1-E2_ATPase Family 2 220 221 139.0 1.2e-40 1 No_clan MMSYN1_0879 356 628 356 628 PF00702.24 Hydrolase Domain 1 210 210 51.0 2e-13 1 CL0137 MMSYN1_0879 698 876 697 876 PF00689.19 Cation_ATPase_C Family 2 182 182 64.5 8.7e-18 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0879 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0881 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:31:27 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0881.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0881 156 421 155 422 PF07672.11 MFS_Mycoplasma Family 2 272 274 141.6 2.5e-41 1 CL0015 ############################################################################################### ############# Pfam MMSYN1_0881 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0885 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:25 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0885.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0885 6 397 6 399 PF01134.20 GIDA Family 1 390 392 506.2 5.6e-152 1 CL0063 MMSYN1_0885 401 615 401 615 PF13932.4 GIDA_assoc Domain 1 184 184 212.4 4.8e-63 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0885 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0886 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:24 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0886.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0886 46 480 45 481 PF00375.16 SDF Family 2 389 390 331.4 6.5e-99 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0886 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0887 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:30:54 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0887.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0887 2 303 1 307 PF07992.12 Pyr_redox_2 Domain 2 288 292 203.9 2.7e-60 1 CL0063 MMSYN1_0887 331 432 327 436 PF02852.20 Pyr_redox_dim Domain 5 104 110 34.6 1.6e-08 1 CL0608 ############################################################################################### ############# Pfam MMSYN1_0887 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0906 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:29:52 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0906.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0906 118 192 37 198 PF01636.21 APH Family 152 228 240 40.3 3e-10 1 CL0016 ############################################################################################### ############# Pfam MMSYN1_0906 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0907 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:36 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0907.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0907 4 256 4 260 PF08282.10 Hydrolase_3 Domain 1 243 255 84.4 9.5e-24 1 CL0137 ############################################################################################### ############# Pfam MMSYN1_0907 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0908 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:20 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0908.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0908 166 368 164 370 PF02096.18 60KD_IMP Family 3 164 166 98.5 3.5e-28 1 CL0376 ############################################################################################### ############# Pfam MMSYN1_0908 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0909 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:33:49 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0909.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0909 1 108 1 109 PF00825.16 Ribonuclease_P Family 1 108 109 96.3 9.4e-28 1 CL0329 ############################################################################################### ############# Pfam MMSYN1_0909 FINISH ############################################################################################### ############################################################################################### ############# Pfam MMSYN1_0910 START ############################################################################################### # pfam_scan.pl, run at Mon Feb 13 18:32:09 2017 # # Copyright (c) 2009 Genome Research Ltd # Freely distributed under the GNU # General Public License # # Authors: Jaina Mistry (jaina@ebi.ac.uk), # Rob Finn (rdf@ebi.ac.uk) # # This is free software; you can redistribute it and/or modify it under # the terms of the GNU General Public License as published by the Free Software # Foundation; either version 2 of the License, or (at your option) any later version. # This program is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # this program. If not, see . # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # query sequence file: /home/ma745/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0910.fasta # searching against: /home/ma745/CAFA/pfam/pfamData/Pfam-A.hmm, with cut off --cut_ga # resolve clan overlaps: on # predict active sites: off # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = # # MMSYN1_0910 1 44 1 44 PF00468.15 Ribosomal_L34 Family 1 44 44 84.0 4.5e-24 1 No_clan ############################################################################################### ############# Pfam MMSYN1_0910 FINISH ###############################################################################################