This README.txt file was generated on 30.05.2019

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GENERAL INFORMATION
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1. Title of Dataset: 
	Data associated with the paper Antczak et al. "Environmental conditions shape the nature of a minimal bacterial genome" published in Nature Communications 2019. 

2. Author Information:
	Antczak, Magdalena	
	School of Biosciences, University of Kent	
	ma745@kent.ac.uk	

	Michaelis, Martin	
	School of Biosciences, University of Kent	
	m.michaelis@kent.ac.uk	

	Wass, Mark N	
	School of Biosciences, University of Kent		
	m.n.wass@kent.ac.uk	

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DATA & FILE OVERVIEW
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Each file contains results obtained from a particular method for all the minimal genome proteins. Some of the results files are created by concatenation of separate protein or group of proteins results files.

Filename: 3DLigandSite.txt
Description: Structural models (in pdb format) generated by 3DLigandSite.

Filename: Argot2.5.txt
Description: Results (in csv format) containing Gene Ontology terms predicted by Argot2.5.

Filename: BLASTAgainstUniProt.txt
Description: Best BLAST for each of the proteins.

Filename: CATHFunFams.txt
Description: Results (in json format) containing CATH functional familes predicted by CATH FunFHMMer web server.

Filename: CombFunc.txt
Description: Results (in tsv format) containing Gene Ontology terms predicted by CombFunc.

Filename: DISOPRED3.txt
Description: Disorder ratio for each residue of all the proteins predicted by DISOPRED3.

Filename: eggNOG-Mapper.txt
Description: Results (in tsv format) containing Best Orthologous Groups, KEGG pathways, Gene Ontology terms, gene name, etc. predicted for all the proteins by eggNOG-Mapper.

Filename: FFPred3.txt
Description: Results containing Gene Ontology terms predicted by FFPred3.

Filename: InterPro.txt
Description: Results (in tsv format) containing families from all InterPro resources.

Filename: LipoP.txt
Description: Results containing predictions of lipoproteins.

Filename: LocTree3.txt
Description: Results (in csv format) containing Gene Ontology terms predicted by LocTree3.

Filename: Pfam.txt
Description: Domains predicted for each of the proteins by PfamScan.

Filename: Phyre2.txt
Description: Results containing names of matching structural models and the alignment predicted by Phyre2.

Filename: TIGRFAM.txt
Description: Families of equivalogs predicted for each of the proteins by Hmmer3.

Filename: TMHMM.txt
Description: Results containing proteins topology predicted by TMHMM.

Filename: TrSSP.txt
Description: Results containing predictions of transporters and possible substrates made by TrSSP.