###############################################################################################
############# TIGRFAM MMSYN1_0001 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0001.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0001/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0001 [L=450]
Description: dnaA 5=Equivalog DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.2e-115 383.2 26.5 5.2e-115 382.9 26.5 1.0 1 TIGR00362 DnaA: chromosomal replication initiator protein Dn
6.3e-26 89.3 0.0 1.4e-25 88.2 0.0 1.5 1 TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
Domain annotation for each model (and alignments):
>> TIGR00362 DnaA: chromosomal replication initiator protein DnaA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 382.9 26.5 2.3e-118 5.2e-115 9 437 .] 17 447 .. 10 447 .. 0.93
Alignments for each domain:
== domain 1 score: 382.9 bits; conditional E-value: 2.3e-118
TIGR00362 9 ekelseeefetwlkklklekieeetlilsvpnefvkewlekkylekikellkelaeeeleieltveeeeeesekeskkeeekekeeeeekskkselnp 106
+k++ e+ ++ ++k+++++k + i+ v+++f +++ ++++i++ +k++ +e ++i++t+e+e +++ ++ + +++++ ++ k + +
MMSYN1_0001 17 NKNIDESVYNDYIKTINIHKKGFSDYIVVVKSQFGLLAIKQ-FRQTIENEIKNILKEPVNISFTYEQEYKKQLEKDELINKDHSDIITK---KVKKTN 110
6789999*****************************99988.************************44444433333333333333333...357777 PP
TIGR00362 107 kytFdnFvvGksNklalaaakavaenpgkaynPlfiyGgvGlGKTHLlqAigneilkknpnakvvYvsaekFvndfvkalre..kkieefkekyrsvD 202
+ tF+nFv+G+sN+ a+ a+++v++npg +ynPlfiyG++G+GKTHLl+A n+i ++ ++ kv Y+s ++F+++ v+ l++ k+ie+fk++ + D
MMSYN1_0001 111 ENTFENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKthKEIEQFKNEVCQND 208
88*******************************************************************************9999************* PP
TIGR00362 203 lLLiDDiqflagkektqeeffhtfnalleknkqivltsDrapkelegleeRLkSRfewGLvvdieppdletrlaILkkkaeeeklelp..eevlefia 298
+L+iDD+qfl+ kekt+e ff +fn+++e++kq+ ++sD++p+ l+g+++RL++Rf++GL+++i++ d +t aI+kk +++++++ + +e+++fi+
MMSYN1_0001 209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKSEvtSEAINFIS 306
**********************************************************************************99877766******** PP
TIGR00362 299 kkirsnvReLeGalnrvlayasltg..keitlelakealkdllkkeekeitieeIqevVaeyykikvsdlkskkRkkeivrpRqiamyLakeltdlsl 394
+ ++++vR+++G + r+ ++++ + k it+e+++++++d+ +++ +++++I+evV+e+y+i+v+ + +k R+k+iv++R+iam+L ke+++++l
MMSYN1_0001 307 NYYSDDVRKIKGSVSRLNFWSQQNPeeKIITIEIISDLFRDIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMFLTKEILNHTL 404
********************9977533789*************9999*************************************************** PP
TIGR00362 395 peIGkafggrdHtTVlhavrkieeliesdaelkedieelkkkl 437
+IG++fggrdHtTV++a rkie+++++d++lk++++ lk+k+
MMSYN1_0001 405 AQIGEEFGGRDHTTVINAERKIETMLKKDKQLKKTVDILKNKI 447
****************************************987 PP
>> TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.2 0.0 6.1e-29 1.4e-25 6 219 .. 106 339 .. 103 346 .. 0.82
Alignments for each domain:
== domain 1 score: 88.2 bits; conditional E-value: 6.1e-29
TIGR03420 6 vqlkedatldnFlage.naellaalrel..aeakaerllylwGesgsGksHLLqAacaaaeea..gksaiylplkelaqllvevlegle......... 89
v+ ++++t++nF+ g+ n+++ a++ + + + + + l+++Gesg+Gk+HLL+Aa + +e++ + ++ y++ +e a+ v++l++ +
MMSYN1_0001 106 VKKTNENTFENFVIGAsNEQAFIAVQTVskNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNfsDLKVSYMSGDEFARKAVDILQKTHkeieqfkne 203
78899********9966*********994334446788********************998864478999**99888777666544322111111111 PP
TIGR03420 90 ..qaelvalDdvealagereweealfdlynrlresgrkllvageaaPaelklrlpDLrtRlawglvfqlkplsdeeklaaLqeraaerGl..eLpdev 183
q +++++Ddv+ l+ +++ +e f ++n++ e++++l ++++++P+ l+ + L tR+++gl++++++l+++ +a+++++ ++ + e+++e
MMSYN1_0001 204 vcQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIksEVTSEA 301
226689********************************************988799***************************998877633799*** PP
TIGR03420 184 aeyllkrlsrdlrsLlelLdaLdkasla..ekrkiTiP 219
++++ + +s d+r++ + +L+ +s + e++ iTi
MMSYN1_0001 302 INFISNYYSDDVRKIKGSVSRLNFWSQQnpEEKIITIE 339
********************999998772234556665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (450 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 432 (0.0962567); expected 89.8 (0.02)
Passed bias filter: 88 (0.0196078); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 2809.65
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0001 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0002 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0002.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0002/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0002 [L=375]
Description: DNA polymerase III, beta subunit 5=Equivalog DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-66 221.8 20.6 3.3e-66 221.6 20.6 1.0 1 TIGR00663 dnan: DNA polymerase III, beta subunit
Domain annotation for each model (and alignments):
>> TIGR00663 dnan: DNA polymerase III, beta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 221.6 20.6 7.4e-70 3.3e-66 1 364 [. 1 370 [. 1 373 [. 0.97
Alignments for each domain:
== domain 1 score: 221.6 bits; conditional E-value: 7.4e-70
TIGR00663 1 mkfiiekekllkelskvskvlskrktipilsnvllevkddkLtltatDleislessie....tveiekeGsvlisakklldivraLpdskielevknd 94
m f+i++ ll++lsk++kv++ ++ +p l ++ l+v d++ + at +s++s + ++e+++eG+vl++ k++l+ r+L d+ +++ + +d
MMSYN1_0002 1 MNFSINRMVLLDNLSKAAKVIDPKNVNPSLAGIYLNVLSDQVNIIATSGILSFKSILNnqnsDLEVKQEGKVLLKPKFVLEMLRRLDDEFVVFSMVED 98
89*****************************************************9998888999*****************************9888 PP
TIGR00663 95 k.llikseksrfklptldaeeyPnlptieekksielpskvLkelieqtafavsedetrqvLnGvkieqegkeLllvaTDghRLavrklkselseeedf 191
+ l+ik ++s f++ l++e+yP + e++ +++l+ k k+ i q+ ++++e++++ +L+G++++ ++++ ++ TD++R++ + l++++ ++ed+
MMSYN1_0002 99 NeLIIKTDNSDFSIGVLNSEDYPLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKLNNNKAIFSTTDSFRISQKILEIQSDNNEDI 196
87*****************************************************************9999*************************** PP
TIGR00663 192 sviiPakallelkkllseegevvllilndkkvvielknkkftsklidGeYPdykkvipkeqkrsvtvnrkeLkealkrvslladekrklvltllekgk 289
+++iP k+ lel kll++ ++++++i+ + + + +n+ f+s+lidG++P+ + p+++++ +tv++k +++ l r l+ad ++ + +++
MMSYN1_0002 197 DITIPFKTALELPKLLDNAENLKIIIV-EGYITFIIDNVIFQSNLIDGRFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNED 293
******************999999887.*********************************************************9988888777778 PP
TIGR00663 290 klklsaetqeigkaeeeieaa.yeGe.eleiafnikYlldaLkalkseeielqlnepskpllieaendekitylimP 364
k++ ++ e+gk ee++++ +eG+ +l i+fn +l+da+k l +iel+l+++ kp++i++ de+++++i+P
MMSYN1_0002 294 KIEFKSFISEVGKYEEDFDDFvIEGNkSLSISFNTRFLIDAIKTLDEDRIELKLINSTKPIVINNVYDEHLKQVILP 370
*************************9899***********************************************9 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (375 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 198 (0.0441176); expected 89.8 (0.02)
Passed bias filter: 78 (0.0173797); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 2834.30
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0002 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0003 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0003.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0003/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0003 [L=180]
Description: rnmV 5=Equivalog Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-38 130.7 12.1 1.5e-38 130.6 12.1 1.0 1 TIGR00334 5S_RNA_mat_M5: ribonuclease M5
0.0022 14.5 0.4 0.0028 14.1 0.4 1.1 1 TIGR01056 topB: DNA topoisomerase III
------ inclusion threshold ------
0.018 11.9 0.0 0.024 11.5 0.0 1.1 1 TIGR03079 CH4_NH3mon_ox_B: methane monooxygenase/ammonia mon
Domain annotation for each model (and alignments):
>> TIGR00334 5S_RNA_mat_M5: ribonuclease M5
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 130.6 12.1 1e-41 1.5e-38 1 171 [. 3 173 .. 3 176 .. 0.94
Alignments for each domain:
== domain 1 score: 130.6 bits; conditional E-value: 1e-41
TIGR00334 1 kikevivveGkdDqarlkqlf..DvdvietnGsAlkketinlikkvakkkgvilllDpDksGekiRkklekaldk.yenafikkkalkpnkkkigvee 95
kik++i+veGk+D +lk ++ D ++i+t+G l+k+t+++ik ++k gvi+++DpD +G+kiR+++ ++ld+ + nafikk+++ + +kk+g++e
MMSYN1_0003 3 KIKQIIIVEGKTDSDKLKSIYgnDLKTIQTKGLSLNKKTLEMIKEFNNKTGVIIFTDPDGAGKKIRQTIIDYLDNkVLNAFIKKDDISKTSKKVGIAE 100
9******************9867999***********************************************96368******************** PP
TIGR00334 96 aekealiaaLenvqeltkaaqkdlsledllelgligeaskekReklcnklklgy.fnskqLlkkLnllklkksdllk 171
a+++a+ +aL+n ++++ +ls+ d+++ ++ k++R +c+ +++ + sk L+k Ln +++ +d++k
MMSYN1_0003 101 ASDDAIKKALDNLIIY-DKNNVSLSWTDYINNDFY---LKSNRIVICKYFNFDNnISSKTLFKWLNWMNVSIDDIKK 173
************8765.556789***********9...9************9752689****************987 PP
>> TIGR01056 topB: DNA topoisomerase III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.1 0.4 1.8e-06 0.0028 82 151 .. 39 115 .. 26 125 .. 0.74
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 1.8e-06
TIGR01056 82 kkqfnvikrllkekevdevviAtDadREGeliareildklkvrk..........kvrvkRlwlssltdkairkalkklrs 151
kk ++ ik++ + v+i tD+d G+ i + i+d+l+ + ++ k++ +++ +d ai+kal++l
MMSYN1_0003 39 KKTLEMIKEFNN---KTGVIIFTDPDGAGKKIRQTIIDYLDNKVlnafikkddiSKTSKKVGIAEASDDAIKKALDNLII 115
566666766544...5689********************96332224554233334557899***************965 PP
>> TIGR03079 CH4_NH3mon_ox_B: methane monooxygenase/ammonia monooxygenase, subunit B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.0 1.6e-05 0.024 30 139 .. 68 176 .. 61 179 .. 0.87
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 1.6e-05
TIGR03079 30 rmrtiqwydlkwgketikvnetatitGkfrlaedwpravekpevsflnvGspspvfvrlstkvnGepvfisgplelGrdyefevklkaripGrhhvha 127
r i++ d k + ik +++ + + k +ae +a++k l + + + v + ++n ++ +s +++ + ++f+ ++ ++ ++
MMSYN1_0003 68 RQTIIDYLDNKVLNAFIKKDDISKTSKKVGIAEASDDAIKKALD-NLIIYDKNNVSLSWTDYINNDFYLKSNRIVICKYFNFDNNISSKTLFKWLNWM 164
666789999999999***********************998755.556778899********************************999998888777 PP
TIGR03079 128 llnvkdaGplaG 139
+ + d ++G
MMSYN1_0003 165 NVSIDDIKKIIG 176
777777777776 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (180 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 281 (0.0626114); expected 89.8 (0.02)
Passed bias filter: 101 (0.0225045); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1292.44
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0003 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0004 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0004.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0004/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0004 [L=266]
Description: ksgA 5=Equivalog rRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-76 255.6 7.1 1.2e-76 255.4 7.1 1.0 1 TIGR00755 ksgA: ribosomal RNA small subunit methyltransferas
8e-07 26.7 0.1 1.8e-06 25.6 0.1 1.5 2 TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransfer
1.6e-06 26.0 0.1 1.6e-06 26.0 0.1 2.2 3 TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransfe
1.7e-06 25.8 1.0 1.7e-06 25.8 1.0 1.5 2 TIGR00537 hemK_rel_arch: putative methylase
6.7e-06 24.4 1.1 1.3e-05 23.5 0.1 1.9 2 TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarb
0.00015 19.2 0.0 0.00023 18.6 0.0 1.3 1 TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransf
0.00058 17.2 0.5 0.00058 17.2 0.5 1.9 2 TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
0.0021 14.6 0.0 0.003 14.0 0.0 1.2 1 TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltra
0.0023 14.8 0.3 0.0039 14.0 0.3 1.3 1 TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
0.0036 14.6 0.1 0.0059 13.9 0.1 1.4 1 TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
0.0053 14.5 0.1 0.011 13.5 0.1 1.5 1 TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
Domain annotation for each model (and alignments):
>> TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 255.4 7.1 2.9e-79 1.2e-76 1 255 [. 1 260 [. 1 261 [. 0.97
Alignments for each domain:
== domain 1 score: 255.4 bits; conditional E-value: 2.9e-79
TIGR00755 1 frakkklGQnfLvdesvlqkivealeiqesdrvlEiGpGlGaLTeellkkakkvvavEiDkrlaeelrkkleeekkleiiegDalkldleelakdk.. 96
++akk +GQnf+ d ++++kiv++l+ ++++ ++EiGpG+GaLT+el+k+ +kvv++EiDk+++e+l++k+++ ++leii+ D+l++dl++l +
MMSYN1_0004 1 MKAKKYYGQNFISDLNLINKIVDVLDQNKDQLIIEIGPGKGALTKELVKRFDKVVVIEIDKDMVEILKTKFNH-SNLEIIQADVLEIDLKQLISKYdy 97
589********************************************************************99.******************998789 PP
TIGR00755 97 ...kvvsNlPYnissplvlkllkekkklkkavlmvQkEvaeRlvAkpgskdYgrlsvlvqllanvelvlkVppsaFkPkPkVdSavvrlkpkkekale 191
++sN+PY+i+s++++k+l+ + l+kav+m+QkEva R+++++++++Y ls+++q++ + + + V++++F+P PkVdSa+++l+ ++ +++
MMSYN1_0004 98 kniSIISNTPYYITSEILFKTLQISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPIPKVDSAIISLTFNDIYKKQ 195
999***************************************************************************************88766555 PP
TIGR00755 192 .kdleeleellkaaFsqrrKtlrnalkellkekekleevlkelgldadkraeelsiedflellnl 255
++ +++ ++++++F+++rKt+ n+l++++++k+k e l+ l+++++ r+e+l+i+++++l+nl
MMSYN1_0004 196 vNNDKKFIDFVRLLFNNKRKTILNNLNNIIQNKNKALEYLNTLNISSNLRPEQLDIDQYIKLFNL 260
488899********************************************************986 PP
>> TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.6 0.1 4.4e-09 1.8e-06 76 167 .. 17 109 .. 15 120 .. 0.89
2 ? -3.1 0.0 2.4 9.8e+02 57 75 .. 163 183 .. 146 201 .. 0.70
Alignments for each domain:
== domain 1 score: 25.6 bits; conditional E-value: 4.4e-09
TIGR03534 76 LveaaleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdlleal.eekgkfdlivsNPPYi 167
L++++++ l++++ ++++g G Ga++ l k+++++ vi +D ++ + ++ N ++l++ ++++l+ dl + + + + k i+sN PY
MMSYN1_0004 17 LINKIVDVLDQNKDQLIIEIGPGKGALTKELVKRFDKVVVIEIDKDMVEILKTKFNHSNLEIIQADVLEIDLKQLIsKYDYKNISIISNTPYY 109
89999999*999999**********************************************999*******988775556666679*****94 PP
== domain 2 score: -3.1 bits; conditional E-value: 2.4
TIGR03534 57 glklkvseavL..iPRpdTEl 75
+ ++ v+++ + iP+ d+ +
MMSYN1_0004 163 NFEFVVNKKMFypIPKVDSAI 183
457888888885566666654 PP
>> TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.0 0.1 4e-09 1.6e-06 21 94 .. 19 89 .. 2 105 .. 0.80
2 ? -0.8 0.1 0.63 2.6e+02 153 188 .. 154 191 .. 119 197 .. 0.73
3 ? -1.8 0.1 1.3 5.2e+02 138 181 .. 216 258 .. 207 264 .. 0.61
Alignments for each domain:
== domain 1 score: 26.0 bits; conditional E-value: 4e-09
TIGR02072 21 kkLlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls..nvqficgdieklple 94
+k++++l+++ +++ +++iG G G+lt++l krf+++ +i +D + m e++k+k + n+++i++d+ +++l
MMSYN1_0004 19 NKIVDVLDQN---KDQLIIEIGPGKGALTKELVKRFDKVVVIEID--KDMVEILKTKFNhsNLEIIQADVLEIDLK 89
5677777775...4569**********************555555..77888888887777999****99888865 PP
== domain 2 score: -0.8 bits; conditional E-value: 0.63
TIGR02072 153 hglrflsleelkallkke..fellkleeelitlsFedv 188
++ +f+s +++ +++k+ +k+++ +i+l+F+d+
MMSYN1_0004 154 IACQFYSQRNFEFVVNKKmfYPIPKVDSAIISLTFNDI 191
55567778888887777774456788888888888875 PP
== domain 3 score: -1.8 bits; conditional E-value: 1.3
TIGR02072 138 etlkElrqlfkqvea.hglrflsleelkallkkefellkleeeli 181
l l+++++ ++ ++l++l+ ++ + l e +++ +l+
MMSYN1_0004 216 TILNNLNNIIQ--NKnKALEYLNTLNISSNLRPEQLDIDQYIKLF 258
45666777777..45588888888877777777544455445555 PP
>> TIGR00537 hemK_rel_arch: putative methylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.8 1.0 4.2e-09 1.7e-06 13 97 .. 23 113 .. 14 128 .. 0.79
2 ? -2.7 0.1 2.4 9.8e+02 97 110 .. 198 211 .. 167 236 .. 0.59
Alignments for each domain:
== domain 1 score: 25.8 bits; conditional E-value: 4.2e-09
TIGR00537 13 knlrelknddvleiGaGtGlvairlkekgkkivatdinPfavkllkenaklnnveldvlesdlfe....nvegkfdv....ilfnpPylelee 97
+ l++ k++ ++eiG G G ++ l ++ +k+v ++i+ v +lk k+n +l+++++d++e ++ k+d i+ n+Py ++e
MMSYN1_0004 23 DVLDQNKDQLIIEIGPGKGALTKELVKRFDKVVVIEIDKDMVEILKT--KFNHSNLEIIQADVLEidlkQLISKYDYknisIISNTPYYITSE 113
5677778778***********************************99..89999999999888652222444466633334888999977665 PP
== domain 2 score: -2.7 bits; conditional E-value: 2.4
TIGR00537 97 edekrgdyldlaid 110
+d+k d++ l ++
MMSYN1_0004 198 NDKKFIDFVRLLFN 211
33334444444443 PP
>> TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.5 0.1 3.1e-08 1.3e-05 13 79 .. 23 89 .. 19 106 .. 0.81
2 ? -2.5 0.1 3.3 1.3e+03 48 75 .. 141 168 .. 132 185 .. 0.56
Alignments for each domain:
== domain 1 score: 23.5 bits; conditional E-value: 3.1e-08
TIGR02469 13 akLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdap 79
+ L +k++ +++iG G G +t e+ +++ k+ v+ i+++ + ++ N ++++ + +++e d +
MMSYN1_0004 23 DVLDQNKDQLIIEIGPGKGALTKELVKRFDKVVVIEIDKDMVEILKTKFNHSNLEIIQADVLEIDLK 89
668888999**********************999999999999988888888888888777776655 PP
== domain 2 score: -2.5 bits; conditional E-value: 3.3
TIGR02469 48 aierneealelieeNlrrfgvsnieive 75
+ ++ne+ ++++ ++ + +n e v
MMSYN1_0004 141 CSNKNENNYNNLSIACQFYSQRNFEFVV 168
4456666666666666666555555444 PP
>> TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.6 0.0 5.6e-07 0.00023 42 121 .. 19 97 .. 13 132 .. 0.82
Alignments for each domain:
== domain 1 score: 18.6 bits; conditional E-value: 5.6e-07
TIGR02021 42 ekllewlpkdslkGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraekedeaenveFev..ndleslegkfDa 121
+k++++l ++ k + +++ G G G l+ el kr +v+ ++i +++ve+ +++ ++++ e ++ v dl++l k+D+
MMSYN1_0004 19 NKIVDVLDQN--KDQLIIEIGPGKGALTKELVKRFDKVVVIEIDKDMVEILKTKFNHSN-LEIIQADVleIDLKQLISKYDY 97
5666666655..8889***********************************99998877.4667666622577888899996 PP
>> TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.2 0.5 1.4e-06 0.00058 11 91 .. 23 100 .. 14 110 .. 0.66
2 ? -2.2 0.2 1.3 5.2e+02 61 79 .. 214 232 .. 180 243 .. 0.63
Alignments for each domain:
== domain 1 score: 17.2 bits; conditional E-value: 1.4e-06
TIGR00091 11 tveg.nkkplvleiGcGkGrfliklAkqnpeknflGiEiekpivlkainkaeklglkNlkvlcgdakkll.ekfipkgslskv 91
+v + nk +l++eiG GkG++ +l k + + + iEi k +v k ++ +Nl++++ d +++ +++i+k + +
MMSYN1_0004 23 DVLDqNKDQLIIEIGPGKGALTKELVKRFDKVVV--IEIDKDMVEILKTKFNH---SNLEIIQADVLEIDlKQLISKYDYKNI 100
455569**********************987665..67777776555444444...355555555555431334444444444 PP
== domain 2 score: -2.2 bits; conditional E-value: 1.3
TIGR00091 61 eklglkNlkvlcgdakkll 79
k l+Nl+ + ++ +k l
MMSYN1_0004 214 RKTILNNLNNIIQNKNKAL 232
3333445555555555544 PP
>> TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.0 0.0 7.4e-06 0.003 272 337 .. 19 82 .. 9 104 .. 0.85
Alignments for each domain:
== domain 1 score: 14.0 bits; conditional E-value: 7.4e-06
TIGR04074 272 eavvaalresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqre 337
+++v++l + + + ++++G G+g+L k+L++ +f+k+v +++ +e+ k +++ ++l+ q +
MMSYN1_0004 19 NKIVDVLDQNKDQLIIEIGPGKGALTKELVK--RFDKVVVIEIDKDMVEILKTKFNHSNLEIIQAD 82
789**************************96..799******999999999999988877655554 PP
>> TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.0 0.3 9.5e-06 0.0039 267 360 .. 3 98 .. 1 104 [. 0.85
Alignments for each domain:
== domain 1 score: 14.0 bits; conditional E-value: 9.5e-06
TIGR00479 267 ardFfqvnseqteklvdralealelqgeekvvDaycGvGtftlplAkqaksvvgvevvkesve..kakrnAelngianveflageleevlpklske 360
a++++ n +l++++ ++l+ +++++++++ G G +t l k+ +vv +e+ k++ve k+k n +i ++ l+ +l + ++k+ +
MMSYN1_0004 3 AKKYYGQNFISDLNLINKIVDVLDQNKDQLIIEIGPGKGALTKELVKRFDKVVVIEIDKDMVEilKTKFNHSNLEIIQADVLEIDLKQLISKYDYK 98
67777778788889***********************************************99556777777778888888888888888887655 PP
>> TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.9 0.1 1.4e-05 0.0059 46 106 .. 26 86 .. 5 154 .. 0.75
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 1.4e-05
TIGR01983 46 kkleglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplkkieyelksv 106
++ ++ ++++G G G l++ l ++ +v+ i++ ++++e+ k++ ++++l+ i+ + ++
MMSYN1_0004 26 DQNKDQLIIEIGPGKGALTKELVKRFDKVVVIEIDKDMVEILKTKFNHSNLEIIQADVLEI 86
44457789***********************************999999998555444333 PP
>> TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.5 0.1 2.6e-05 0.011 57 136 .. 9 82 .. 2 104 .. 0.80
Alignments for each domain:
== domain 1 score: 13.5 bits; conditional E-value: 2.6e-05
TIGR00080 57 gqtisaphmvakmlelLelkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLeldnvivkegD 136
++ is ++ k+++ L+ ++ + ++eiG G G ++ elv+r vv ie +++ve + + + n ++++D
MMSYN1_0004 9 QNFISDLNLINKIVDVLDQNKDQLIIEIGPGKGA---LTKELVKRFDKVVVIEIDKDMVEILKTK---FNHSNLEIIQAD 82
6789***************************995...5567777777799999888887765543...445555555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (266 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 431 (0.0960339); expected 89.8 (0.02)
Passed bias filter: 113 (0.0251783); expected 89.8 (0.02)
Passed Vit filter: 20 (0.00445633); expected 4.5 (0.001)
Passed Fwd filter: 11 (0.00245098); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 11 [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1736.31
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0004 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0005 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0005.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0005/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0005 [L=363]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.8e-08 28.3 3.4 1.2e-07 27.9 3.4 1.1 1 TIGR02168 SMC_prok_B: chromosome segregation protein SMC
5.4e-06 22.3 10.6 7.7e-06 21.8 10.6 1.1 1 TIGR02169 SMC_prok_A: chromosome segregation protein SMC
0.00049 16.1 11.9 0.00049 16.1 11.9 2.6 3 TIGR04523 Mplasa_alph_rch: helix-rich protein
0.0024 15.8 1.8 0.013 13.3 0.1 2.2 2 TIGR03513 GldL_gliding: gliding motility-associated protein
0.0043 14.2 0.1 0.046 10.8 0.3 2.1 2 TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
------ inclusion threshold ------
0.016 11.6 12.7 0.0012 15.4 5.9 1.8 2 TIGR03319 RNase_Y: ribonuclease Y
0.022 12.4 32.7 0.15 9.6 26.7 3.2 2 TIGR04527 mycoplas_twoTM: two transmembrane protein
0.029 11.9 8.4 0.023 12.2 0.4 3.2 3 TIGR04211 SH3_and_anchor: SH3 domain protein
0.065 10.2 12.3 0.16 8.9 12.3 1.6 1 TIGR00414 serS: serine--tRNA ligase
6.3 4.9 10.1 4.3 5.4 3.1 2.7 2 TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
Domain annotation for each model (and alignments):
>> TIGR02168 SMC_prok_B: chromosome segregation protein SMC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.9 3.4 2.6e-10 1.2e-07 722 907 .. 75 258 .. 63 293 .. 0.75
Alignments for each domain:
== domain 1 score: 27.9 bits; conditional E-value: 2.6e-10
TIGR02168 722 eleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelke 819
++++++ ++ +lk+ ++++ + ve+++++ ++++ +l +++ e ++ ++e +e ++e +++++++e ++++ ++ k+++++l+++ +e++el++
MMSYN1_0005 75 NAHKIKPSIPKLKEVYKEALQVVEEVKRETDKNS--SDSLINKIDEIKTIVKEVTEFANEFNDRSKKVEPKVREVIDQGKKITTDLEKVTKEIEELRK 170
5556666677777777777777777776655544..45678888888888888888889999999999999999999999999999999999999999 PP
TIGR02168 820 eaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelre 907
+ +++++r+++ ++ + l + + ++++ +++ +e++ ++++ ++++ee +++++++e ++ke++ +++ + ++ e+l+e r+
MMSYN1_0005 171 TGDSLTNRVRRGLNNFSTLGNLVGTANNDFKSVNESVIRITDLAKKISEEGKKITANVETIKKEVDYFSKRSEIPLRDIEKLKEIYRQ 258
9999999999999999999999999999999999999999999999999999999999999999876666555444444444443333 PP
>> TIGR02169 SMC_prok_A: chromosome segregation protein SMC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.8 10.6 1.7e-08 7.7e-06 255 453 .. 77 275 .. 70 296 .. 0.71
Alignments for each domain:
== domain 1 score: 21.8 bits; conditional E-value: 1.7e-08
TIGR02169 255 ekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekke 352
+k++ i +l++ ++e+ +++ee++++ +k +++ + +k+ e+k ++++ + +e +++ +++e ++++ + +k+ ++e++ +eiee +k
MMSYN1_0005 77 HKIKPSIPKLKEVYKEALQVVEEVKRETDKNSSDS---LINKIDEIKTIVKEVTEFANEFNDRSKKVEPKVREVIDQGKKITTDLEKVTKEIEELRKT 171
67788888888888999999999988888866665...567899999999999999999999999999999999999999999999999999999999 PP
TIGR02169 353 reklkeelkelkeeleelraeleevdkeaaelre...elkelkekleklkeelnelkreldrlleelkrlee.elaelkaelerieekiaeleeelee 446
++l+++++ ++ ++l + + +++++ + e + +l +k+++ +++ ++++ + +++e l+++ ++l++i ++ l e+ ++
MMSYN1_0005 172 GDSLTNRVRRGLNNFSTLGNLVGTANNDFKSVNEsviRITDLAKKISEEGKKITANVETIKKEVDYFSKRSEiPLRDI-EKLKEIYRQKFPLFERNNK 268
999999999888888887777777777666655511155666677776666666666666666666544444044444.4566665555555555555 PP
TIGR02169 447 laeeikk 453
+ei+
MMSYN1_0005 269 RLQEIWS 275
5555554 PP
>> TIGR04523 Mplasa_alph_rch: helix-rich protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.3 0.7 0.4 1.8e+02 120 142 .. 6 28 .. 3 32 .. 0.59
2 ! 16.1 11.9 1.1e-06 0.00049 627 734 .. 77 179 .. 69 186 .. 0.88
3 ! 3.2 4.7 0.0084 3.8 610 672 .. 191 253 .. 183 268 .. 0.74
Alignments for each domain:
== domain 1 score: -2.3 bits; conditional E-value: 0.4
TIGR04523 120 nkkeselnklekekkenkknikk 142
n++e+ l+ le++ ++++kn+ k
MMSYN1_0005 6 NNQEVTLDDLEQNNNKTDKNKPK 28
55566666666666666666544 PP
== domain 2 score: 16.1 bits; conditional E-value: 1.1e-06
TIGR04523 627 kkLeseiknikskkeklkeevkqIketikeirnkkpeiikkikesvekiddiielmkkWpkelslhykkyitekirnkdlpkleekykeieeelkkld 724
k++ i ++k+ +++ + v+++k + + +n++ +i+ki e+++++++++e ++ ++ s+++++++ e i++ + k+ + +++ +e+++l
MMSYN1_0005 77 HKIKPSIPKLKEVYKEALQVVEEVKRETD--KNSSDSLINKIDEIKTIVKEVTEFANEF-NDRSKKVEPKVREVIDQGK--KITTDLEKVTKEIEELR 169
57777788888888888888888888777..467779*********************9.8999***************..***************** PP
TIGR04523 725 efkkeLenii 734
+ ++L n +
MMSYN1_0005 170 KTGDSLTNRV 179
******9876 PP
== domain 3 score: 3.2 bits; conditional E-value: 0.0084
TIGR04523 610 kkiselekelekakkenkkLeseiknikskkeklkeevkqIketikeirnkkpeiikkikesv 672
++ + +++++++++ ++ k+i ++ +k++ +v+ Ik++++ + + i++++
MMSYN1_0005 191 NLVGTANNDFKSVNESVIRITDLAKKISEEGKKITANVETIKKEVDYFSKRSEIPLRDIEKLK 253
566777888888888888888888888888888888888888888876655554445555554 PP
>> TIGR03513 GldL_gliding: gliding motility-associated protein GldL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.3 0.4 0.033 15 125 179 .. 113 167 .. 69 175 .. 0.44
2 ! 13.3 0.1 2.9e-05 0.013 92 213 .. 162 285 .. 133 296 .. 0.75
Alignments for each domain:
== domain 1 score: 3.3 bits; conditional E-value: 0.033
TIGR03513 125 idklaeatealegaaktlakmtdsyakqkedqeglrldaqkYieqleklaknlea 179
i+k+ e ++ +++ +++ +d +k + + + + +k + +lek++k++e+
MMSYN1_0005 113 INKIDEIKTIVKEVTEFANEFNDRSKKVEPKVREVIDQGKKITTDLEKVTKEIEE 167
2233333333333333333333333333333333333333333333333333333 PP
== domain 2 score: 13.3 bits; conditional E-value: 2.9e-05
TIGR03513 92 damlke.akvdaellaslgngikneekisdlsea.idklaeatealegaaktlakmtdsyakqkedqeglrldaqkYieqleklaknleaLNeiYeiq 187
+ ++e k +l ++ g++n + + +l + + + e++ ++++ + k+ + +k ++ e ++ + + ++++ e +++e+L eiY+ +
MMSYN1_0005 162 TKEIEElRKTGDSLTNRVRRGLNNFSTLGNLVGTaNNDFKSVNESVIRITDLAKKISEEGKKITANVETIKKEVDYFSKRSEIPLRDIEKLKEIYRQK 259
3333331344566778888999999999998765045667788999999999999999999999999999999999999999999************* PP
TIGR03513 188 lkgaskqikalneiyaglasirdnyd 213
++ k l+ei ++l i +++
MMSYN1_0005 260 FPLFERNNKRLQEIWSKLMGIFNQFT 285
**************999888877664 PP
>> TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.8 0.3 0.0001 0.046 160 231 .. 110 185 .. 77 234 .. 0.66
2 ? 2.2 0.0 0.044 20 177 268 .. 190 281 .. 183 302 .. 0.70
Alignments for each domain:
== domain 1 score: 10.8 bits; conditional E-value: 0.0001
TIGR00996 160 ealaGqgpqlrelleglaqltaalnerded....igelidnlnrvldvladasdqldrlldnlatliaqladrsda 231
+ l + +++++++++++++++++n+r+++ ++e+id+ +++++ l + ++++++l ++ +l+ +++ +
MMSYN1_0005 110 DSLINKIDEIKTIVKEVTEFANEFNDRSKKvepkVREVIDQGKKITTDLEKVTKEIEELRKTGDSLTNRVRRGLNN 185
4555566777888888888888888887541111567777777777777777777777777777777766654433 PP
== domain 2 score: 2.2 bits; conditional E-value: 0.044
TIGR00996 177 aqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLasvl 268
l+ ++n+ + ++e + + ++++ ++++++++ + ++++++ ++ + +rs+ + +++l++ q l+++n++ L++ ++L ++
MMSYN1_0005 190 GNLVGTANNDFKSVNESVIRITDLAKKISEEGKKITANVETIKKEVDYFSKRSEIPLRDIEKLKEIYRQKFPLFERNNKRLQEIWSKLMGIF 281
56677777777777777777777888888888888888888888888888777765555677888888888888888888888777777665 PP
>> TIGR03319 RNase_Y: ribonuclease Y
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 15.4 5.9 2.6e-06 0.0012 23 119 .. 82 181 .. 49 205 .. 0.77
2 ? 0.0 0.7 0.12 54 78 140 .. 210 272 .. 191 291 .. 0.55
Alignments for each domain:
== domain 1 score: 15.4 bits; conditional E-value: 2.6e-06
TIGR03319 23 aekkleeaeeeakkiieeakkeaeakkkealleakeevkkl...reelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleeke 117
+ kl+e+ +ea +++ee k+e++++ + l+++ +e+k++ +e+ +e+++r k+++ + + + ++ +k++++ ek++k+ eel+k+ ++l+++
MMSYN1_0005 82 SIPKLKEVYKEALQVVEEVKRETDKNSSDSLINKIDEIKTIvkeVTEFANEFNDRSKKVEPKVREVIDQGKKITTDLEKVTKEIEELRKTGDSLTNRV 179
345789999*********************999988877651115577899*******************************************9997 PP
TIGR03319 118 ke 119
++
MMSYN1_0005 180 RR 181
75 PP
== domain 2 score: 0.0 bits; conditional E-value: 0.12
TIGR03319 78 lqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLek 140
+++l k+++++ +k++ + e+++k+ + ++k+ + + ++l+e ++ l ++++++L++
MMSYN1_0005 210 ITDLAKKISEEGKKITANVETIKKEVDYFSKRSEIPLRDIEKLKEIYRQKFPLFERNNKRLQE 272
344445555555555555555555555554444444444444444444444444444444444 PP
>> TIGR04527 mycoplas_twoTM: two transmembrane protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.3 0.3 3 1.3e+03 91 99 .. 12 20 .. 3 34 .. 0.39
2 ? 9.6 26.7 0.00034 0.15 37 202 .. 107 314 .. 35 332 .. 0.54
Alignments for each domain:
== domain 1 score: -3.3 bits; conditional E-value: 3
TIGR04527 91 vekvekele 99
++++e++ +
MMSYN1_0005 12 LDDLEQNNN 20
222222211 PP
== domain 2 score: 9.6 bits; conditional E-value: 0.00034
TIGR04527 37 eisnlykngvnsisslleeikkilnkinsinteiakiennlnslktelnktkenvekvekeleel.........................ssiannte 109
++s+ + n ++i+ + +e+++++n++ n +k+e+ + ++ ++ +k ++ekv ke+eel + +n+++
MMSYN1_0005 107 NSSDSLINKIDEIKTIVKEVTEFANEF---NDRSKKVEPKVREVIDQGKKITTDLEKVTKEIEELrktgdsltnrvrrglnnfstlgnlvGTANNDFK 201
333344444444444444555555555...55666666666666666666666666666666666666666666666666666666666433333333 PP
TIGR04527 110 dsikk..kleelegtlrkinnsviq.vdkfsdnvgsvr............idevlsqvkkllnq....vnsilnelekiinnvnnseqfseyydlvsq 188
+ ++ ++ +l++++++ +++++ v+++++ v+ + + e++ q l + ++i ++l i+n+ + + s+yy+
MMSYN1_0005 202 SVNESviRITDLAKKISEEGKKITAnVETIKKEVDYFSkrseiplrdiekLKEIYRQKFPLFERnnkrLQEIWSKLMGIFNQFTVEKTQSNYYNHLIY 299
22222224555666666655666656666666644333444455555555666666655555443333445555556666665555555566654444 PP
TIGR04527 189 i.lvavsasilglli 202
i l+ ++ si l++
MMSYN1_0005 300 IlLFLIIDSIVLLVL 314
304445555555554 PP
>> TIGR04211 SH3_and_anchor: SH3 domain protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.0 0.0 0.29 1.3e+02 143 168 .. 7 32 .. 3 51 .. 0.73
2 ? 7.4 3.0 0.0016 0.72 80 160 .. 95 177 .. 71 181 .. 0.43
3 ? 12.2 0.4 5.2e-05 0.023 60 153 .. 150 240 .. 143 251 .. 0.78
Alignments for each domain:
== domain 1 score: -0.0 bits; conditional E-value: 0.29
TIGR04211 143 elkqenealeaenerlkeseelewfl 168
+++ ++++le++n++ ++++ + +fl
MMSYN1_0005 7 NQEVTLDDLEQNNNKTDKNKPKVQFL 32
66778888888888888777666665 PP
== domain 2 score: 7.4 bits; conditional E-value: 0.0016
TIGR04211 80 eelaelkeelaelkqe.lkelkeelekleeekeklekele.kikklsenaleleeeneelkeeleelkqenealeaenerlke 160
+ ++e+k e+++++++ l + +e ++ +e + ++e + + kk++ ++ e+ ++ +++++ le++++e+e+l++ ++l++
MMSYN1_0005 95 QVVEEVKRETDKNSSDsLINKIDEIKTIVKEVTEFANEFNdRSKKVEPKVREVIDQGKKITTDLEKVTKEIEELRKTGDSLTN 177
33333333333322220111122333333333333333321344444455555555555555555555555555555544444 PP
== domain 3 score: 12.2 bits; conditional E-value: 5.2e-05
TIGR04211 60 eepsarerleelqkelaelqeelaelkeelaelkqelkelkeelekleeekeklekelekikklsenaleleeeneelkeeleelkqenealea 153
+ ++ + le++ ke++el++ ++l++++ + ++ ++l + + +++++ +++++ + +i +l a++++ee +++++++e++k+e++ +
MMSYN1_0005 150 QGKKITTDLEKVTKEIEELRKTGDSLTNRVRRGLNNFSTLGNLVGTANNDFKSVNESVIRITDL---AKKISEEGKKITANVETIKKEVDYFSK 240
5566777889999999999999999999999888888888888888888888888877777666...667788888888888888888776554 PP
>> TIGR00414 serS: serine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.9 12.3 0.00035 0.16 19 178 .. 99 273 .. 83 297 .. 0.76
Alignments for each domain:
== domain 1 score: 8.9 bits; conditional E-value: 0.00035
TIGR00414 19 karglsveidleklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnl....... 109
++++++ + + + l++ d+ k ++++e +++n +sk+++ k +e d+ ++++ +l++ +e+eel + + l +++++ l +++ l
MMSYN1_0005 99 EVKRETDKNSSDSLINKIDEIKTIVKEVTEFANEFNDRSKKVEPKVREVIDQGKKITTDLEKVTKEIEELRKTGDSLTNRVRRGLNNFSTLgnlvgta 196
34555577889999999999*******************************9999******************9999999998877776664446666 PP
TIGR00414 110 ......vaesvpvgkdeednl.evkkegekksfdfkpk.dHvellekldlldferavkvagsrfvvlknkgaklerA 178
v+esv +d ++ + e+ k ++ ++ ++k++ d + + l d+e+ ++ ++f ++ + +l++
MMSYN1_0005 197 nndfksVNESVIRITDLAKKIsEEGKKITANVETIKKEvDYFSKRSEIPLRDIEKLKEIYRQKFPLFERNNKRLQEI 273
66666666666555555554444444555555555555578888888888899999999999998888777777665 PP
>> TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.4 3.1 0.0096 4.3 82 138 .. 123 183 .. 82 198 .. 0.52
2 ? 3.0 0.4 0.052 23 94 150 .. 202 258 .. 188 283 .. 0.66
Alignments for each domain:
== domain 1 score: 5.4 bits; conditional E-value: 0.0096
TIGR02894 82 ledviefLqnlke....tleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvie 138
+++v ef +++++ +++++++ + +k++++le++ k++eeL+k ++l+++ +
MMSYN1_0005 123 VKEVTEFANEFNDrskkVEPKVREVIDQGKKITTDLEKVTKEIEELRKTGDSLTNRVRRGL 183
3445555544443000033444555556666777777777777777777777776665555 PP
== domain 2 score: 3.0 bits; conditional E-value: 0.052
TIGR02894 94 etleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetlikimdr 150
+ +e++ ++ +k+ ee +++ ++e ++ke++ + k++++ d e l +i +
MMSYN1_0005 202 SVNESVIRITDLAKKISEEGKKITANVETIKKEVDYFSKRSEIPLRDIEKLKEIYRQ 258
555555555555666666666666666666666666666666666666655555444 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (363 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 614 (0.136809); expected 89.8 (0.02)
Passed bias filter: 165 (0.0367647); expected 89.8 (0.02)
Passed Vit filter: 23 (0.00512478); expected 4.5 (0.001)
Passed Fwd filter: 10 (0.00222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 10 [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.25
# Mc/sec: 2085.13
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0005 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0006 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0006.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0006/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0006 [L=634]
Description: gyrB 5=Equivalog DNA topology
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-271 900.1 8.1 2.1e-271 899.9 8.1 1.0 1 TIGR01059 gyrB: DNA gyrase, B subunit
1.3e-238 791.4 12.8 1.6e-238 791.2 12.8 1.0 1 TIGR01058 parE_Gpos: DNA topoisomerase IV, B subunit
1e-179 596.9 5.6 1.2e-179 596.6 5.6 1.0 1 TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit
1e-05 22.1 0.4 0.00011 18.8 0.0 2.1 2 TIGR01052 top6b: DNA topoisomerase VI, B subunit
Domain annotation for each model (and alignments):
>> TIGR01059 gyrB: DNA gyrase, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 899.9 8.1 1.9e-274 2.1e-271 1 638 [. 5 633 .. 5 634 .] 0.98
Alignments for each domain:
== domain 1 score: 899.9 bits; conditional E-value: 1.9e-274
TIGR01059 1 ydadsikvleGleavrkrPgmyiGstgekGlhhlvyevvdnaidealaGycteievtieedgsvtvednGrGiPvdihpeegrsalevvltvlhaGGk 98
y+a+sikvl+Gleavr rPgmyiGst+++Glhhlv+e++dn+idea+aGy++ i+vti++++ v v+dnGrGiPv i ++++sal +v+t+lhaGGk
MMSYN1_0006 5 YSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVTITKENEVIVQDNGRGIPVGINSDTKKSALSLVFTQLHAGGK 102
99************************************************************************************************ PP
TIGR01059 99 fdkdsykvsGGlhGvGvsvvnalseklevkvkrdgkeyrqeferg.epigeleavgeetkktGtkvsflpdteife.tiefdyeilakrlkelaflnk 194
fd+++yk+sGGlhGvG+svvnals +ev+v+r++ +y+q f++g + +el++ g+ t+ +Gtkv+f pd+eif+ t+ fdyei+++++k+laflnk
MMSYN1_0006 103 FDSETYKISGGLHGVGASVVNALSLYVEVEVYRNNIHYHQLFSEGgTKESELQQLGH-TDLRGTKVKFKPDPEIFKeTVVFDYEIIKNKVKQLAFLNK 199
******************************************998477899*****9.9*****************99******************** PP
TIGR01059 195 gvkielederaeslkeeefyyegGikeyvkylnkdkealheeiiyisgekedvevevalqyndaysenilsfanniktreGGthlegfkaaltrvlns 292
g+ki+l+der e k +e+ + +Gi +y+k n++k+++ ++i+y++++ ed+eve+alqyn++y+eni++f+nni+t+eGGth++g+k+al r +n+
MMSYN1_0006 200 GLKITLTDERIE--KTVEYLFLNGILDYIKEKNETKNKINPNIFYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALIRDINR 295
**********76..8899******************************************************************************** PP
TIGR01059 293 vakkrkllkdeksnltgedireGltavisvkvpdPqfegqtktklgnsevrsiveklvgealtefleenpeeakaivekaleaakareaarkarelvr 390
+a++ ++ ++ s+++ +di+eG+++++sv+++dPq+egqtktkl+n ++++ v+ ++g+a++efl + pe+akai++k ++a+kar aa+kare +r
MMSYN1_0006 296 YADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETR 393
************************************************************************************************** PP
TIGR01059 391 rksalesstlPGkladcsskdPseselyiveGdsaGGsakqgrdrkfqailPlrGkilnvekarldkilkneeikalitalGlgikeddfdleklryh 488
rksal+s +lPGkladc++kd s++ely+veGdsaGGsak+gr+rkfqailPlrGk+lnve+ ++ ++n+eik++ita+G+gike+ +dl+klry+
MMSYN1_0006 394 RKSALDSFSLPGKLADCETKDSSIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIITAVGTGIKEE-LDLSKLRYK 490
*************************************************************************************997.********* PP
TIGR01059 489 kivimtdadvdGshirtllltffyrylrelveqgyvyiaqpPlykvkkgkkdkelvkalylysdkekeeaksqleskkaeleiqrykGlGemnaeqlW 586
kivimtdadvdG+hirtllltffyry+++lv +g++yiaqpPlyk++ gk k+ y+y+d++++e k++ e ++ +++iqrykGlGem++ qlW
MMSYN1_0006 491 KIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKIEAGK------KIAYAYTDSQLDELKNN-EFNNLKYTIQRYKGLGEMDPLQLW 581
**************************************************......789********998877.55889******************* PP
TIGR01059 587 ettmdpesrtlkkvkiedaaeadkiftvlmGdeveprrefieanaldvkdld 638
ettmdp++rt++++++eda+ a+++f+ lmG++ e r+ +i+ na+ v+++d
MMSYN1_0006 582 ETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKFVENID 633
*************************************************998 PP
>> TIGR01058 parE_Gpos: DNA topoisomerase IV, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 791.2 12.8 1.4e-241 1.6e-238 1 630 [. 1 629 [. 1 633 [. 0.96
Alignments for each domain:
== domain 1 score: 791.2 bits; conditional E-value: 1.4e-241
TIGR01058 1 makkynedaikvleGleavrkrpGmyiGstdskGlhhlvweivdnsvdevlagyadnievtldkdnsisvqddGrGipveihkkgkistvevvltvlh 98
m+++y++++ikvl+Gleavr rpGmyiGst+ +Glhhlvwei+dns+de++agyad i+vt+ k+n + vqd+GrGipv+i++++k+s++ v+t lh
MMSYN1_0006 1 MSQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVTITKENEVIVQDNGRGIPVGINSDTKKSALSLVFTQLH 98
899*********************************************************************************************** PP
TIGR01058 99 aGGkfdegayktaGGlhGvGasvvnalsewlevevkrdgkvyqqrfenGGkivqslkkiGttkktGtlvsfkpdpkifkkt.efnsniikerlkesaf 195
aGGkfd ++yk++GGlhGvGasvvnals ++evev+r++ y+q f +GG +l+++G+t Gt+v+fkpdp ifk+t +f+++iik+++k++af
MMSYN1_0006 99 AGGKFDSETYKISGGLHGVGASVVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHTDLRGTKVKFKPDPEIFKETvVFDYEIIKNKVKQLAF 196
******************************************************************************97537*************** PP
TIGR01058 196 llkdlkleltdkktdkkevffsenGledfvkylneekevlsevv.lfkgekngievevafqyndsesenilsfvnsvktkeGGthenglksaltkvln 292
l k+lk++ltd++ +k++++ nG+ d++k+ ne+k+ + + + +++++ ++ieve+a+qyn +++eni++fvn+++t+eGGthe+glk+al + +n
MMSYN1_0006 197 LNKGLKITLTDERIEKTVEYLFLNGILDYIKEKNETKNKINPNIfYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALIRDIN 294
*************************************9887655288999************************************************ PP
TIGR01058 293 eyarkvnllkekdknlegsdireGlsavisvripeellqfeGqtkdklfskeakevvdeivedklaffleenkeeakllvkkaikardakeaakkare 390
ya v + + +di+eG+ +++svr + q+eGqtk kl ++ake+v+ i+ + + fl + e+ak +++k ++a++a+ aa+kare
MMSYN1_0006 295 RYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTD--PQYEGQTKTKLSNPDAKEAVNIIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQKARE 390
***988777777889***************99665..69*********************************************************** PP
TIGR01058 391 ekksvkkkkkekgllsGkltpaqsknpaknelflveGdsaGGsaklGrdrkfqailplrGkvlnvekakladilkneeiatlifaiGtGvgadfsikd 488
e+++ + l Gkl+ +++k+++ el+lveGdsaGGsak Gr+rkfqailplrGkvlnve++ a ++ n+ei+++i+a+GtG+ ++++ +
MMSYN1_0006 391 ETRRKSALD--SFSLPGKLADCETKDSSIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIITAVGTGIKEELDLSK 486
**9866554..445************************************************************************************ PP
TIGR01058 489 lkydkiiimtdadtdGahiqvllltffyrymrplieaGkvyialpplyklskkdgkkvkyawsdleleelkkkl.kn..ytlqrykGlGemnadqlwe 583
l+y+ki+imtdad dGahi++llltffyrym+pl+ +G++yia pplyk++ gkk++ya++d +l+elk + +n yt+qrykGlGem+ qlwe
MMSYN1_0006 487 LRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKIEA--GKKIAYAYTDSQLDELKNNEfNNlkYTIQRYKGLGEMDPLQLWE 582
**************************************************86..699*************9876565559****************** PP
TIGR01058 584 ttmnpetrklvrvkiddllraerrvnvlmGdkvelrkkwieknvkfs 630
ttm+p++r+++++ ++d+ a+ + lmG++ elrk +i++n kf
MMSYN1_0006 583 TTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKFV 629
********************************************994 PP
>> TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 596.6 5.6 1.1e-182 1.2e-179 2 622 .. 3 626 .. 2 629 .. 0.95
Alignments for each domain:
== domain 1 score: 596.6 bits; conditional E-value: 1.1e-182
TIGR01055 2 tnysakeievldglepvrkrpGmyi...dttrpnhlaqevldnsvdealaGfaskievilhadqsievidnGrGipvdihpkedvsaveviltklhaG 96
++ysa+ i+vl+gle vr rpGmyi t +hl+ e+ldns+dea+aG+a i+v + +++ + v dnGrGipv i + +sa+ +++t+lhaG
MMSYN1_0006 3 QEYSAESIKVLKGLEAVRTRPGMYIgstSKTGLHHLVWEILDNSIDEAMAGYADLINVTITKENEVIVQDNGRGIPVGINSDTKKSALSLVFTQLHAG 100
78***********************54444568***************************************************************** PP
TIGR01055 97 gkfsnknyefsGGlhGvGisvvnalskrveikvkrdGklykiafek.GakvedlevvetsgkrltGtsvhfkpdpeifds.lkfsvsrlreilrakav 192
gkf ++y++sGGlhGvG svvnals ve++v+r+ y++ f++ G+k +l+ ++ + l+Gt v+fkpdpeif++ + f+ + +++ ++ a+
MMSYN1_0006 101 GKFDSETYKISGGLHGVGASVVNALSLYVEVEVYRNNIHYHQLFSEgGTKESELQQLGHT--DLRGTKVKFKPDPEIFKEtVVFDYEIIKNKVKQLAF 196
********************************************87258999*****999..899**************9899*************** PP
TIGR01055 193 lyrGveiefedevenkkalilyedGlkdylaeavnglelliekifvGniegddeavewallwlpedgelltesyvnliptiqGGthvnGlrqalldal 290
l +G++i+ +de k +l+ +G+ dy+ e+ ++++ + ++if + + +d++ve al + ++ e + ++vn i t +GGth++Gl+qal++ +
MMSYN1_0006 197 LNKGLKITLTDERIEKTVEYLFLNGILDYIKEKNETKNKINPNIFYVDSKYEDIEVEMALQYNSDYQENII-TFVNNINTHEGGTHEDGLKQALIRDI 293
***********988899999******************************************999998887.69************************ PP
TIGR01055 291 refsel.rnllpravkltiedildrasyvlsikiqdpqfaGqtkerlssrqvaklvsgvikdafdlflnqdvqaaeklaeiaissaerr...lraakk 384
+ +++ +++ k++ +di + +ls++ dpq++Gqtk +ls ++ v+ +i +af+ fl + +a+ +++ + + + r ++a +
MMSYN1_0006 294 NRYADTvIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAFEEFLLKSPEDAKAILDKNVNAQKARiaaQKAREE 391
***986234444789********************************************************************999999776677778 PP
TIGR01055 385 vvrkkltsklalpGkladctaqdlektelflveGdsaGGsakqardreyqailplkGkilnvaevsldkvlasqeiqdlevalaidsdsnd.lsqlry 481
rk+ + +lpGkladc ++d +el+lveGdsaGGsak r+r++qailpl+Gk+lnv v+ + ++++ei+ + a++ + +++ ls+lry
MMSYN1_0006 392 TRRKSALDSFSLPGKLADCETKDSSIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIITAVGTGIKEELdLSKLRY 489
999***********************************************************************************988755****** PP
TIGR01055 482 ekiiiladadsdGlhiatlllalflkrlpklveeGhvyvalpplyrldlskevyyaldeeekeklleklkkkkakievqrfkGlGemnpaqlrettld 579
+ki+i++dad+dG+hi tlll++f++ ++ lv +Gh+y+a+pply+++ +k++ ya ++ + +l ++ + + k +qr+kGlGem p ql ett+d
MMSYN1_0006 490 KKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKIEAGKKIAYAYTDSQLDELKNN-EFNNLKYTIQRYKGLGEMDPLQLWETTMD 586
**********************************************************9987776554.33467999********************* PP
TIGR01055 580 pekrrlvkltlddeedqrvdklvddllakkrsedrknflqekg 622
p++r +++++l+d ++++ dl++ +e rk ++q+ +
MMSYN1_0006 587 PQQRTMLQISLEDATL--ANEVFSDLMGED-PELRKIYIQDNA 626
************9987..99*********9.********9864 PP
>> TIGR01052 top6b: DNA topoisomerase VI, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.8 0.0 9.4e-08 0.00011 28 111 .. 34 122 .. 21 131 .. 0.80
2 ? 1.2 0.0 0.019 22 264 307 .. 289 331 .. 183 349 .. 0.83
Alignments for each domain:
== domain 1 score: 18.8 bits; conditional E-value: 9.4e-08
TIGR01052 28 slttvikelvtnsldaceeaGilPdikveieklgkdhykvavednGpGiPe........eyipkvfgkllagsklh..riiqsrGqqGiGisga 111
l ++ e+++ns+d + aG i+v i k ++ v+v+dnG GiP+ ++ vf++l ag k+ ++ s G +G+G+s +
MMSYN1_0006 34 GLHHLVWEILDNSIDEA-MAGYADLINVTITKENE----VIVQDNGRGIPVginsdtkkSALSLVFTQLHAGGKFDseTYKISGGLHGVGASVV 122
6889999********87.69**********99776....***********63333322246889**********9622467899******9865 PP
== domain 2 score: 1.2 bits; conditional E-value: 0.019
TIGR01052 264 kikellekvgeevksldkkPkeltkdeaekivealkkmeflaPp 307
i+++ +++ + +k+ +k+P ++ +d+ ++ + ++ ++ P+
MMSYN1_0006 289 LIRDINRYADTVIKN-NKTPSKFSWDDIKEGMMCILSVRHTDPQ 331
456666665555555.***********99999998888877776 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (634 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 207 (0.046123); expected 89.8 (0.02)
Passed bias filter: 101 (0.0225045); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.24
# Mc/sec: 3793.55
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0006 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0007 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0007.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0007/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0007 [L=834]
Description: gyrA 5=Equivalog DNA topology
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.8e-302 1000.9 19.8 1.1e-301 1000.5 19.8 1.0 1 TIGR01063 gyrA: DNA gyrase, A subunit
2.6e-196 652.3 26.9 2.5e-188 625.9 22.0 2.0 2 TIGR01061 parC_Gpos: DNA topoisomerase IV, A subunit
1.2e-165 550.6 19.7 2e-164 546.5 14.2 2.0 2 TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit
Domain annotation for each model (and alignments):
>> TIGR01063 gyrA: DNA gyrase, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1000.5 19.8 7.3e-305 1.1e-301 1 796 [. 22 818 .. 22 821 .. 0.99
Alignments for each domain:
== domain 1 score: 1000.5 bits; conditional E-value: 7.3e-305
TIGR01063 1 ivpvnieeelkesyldYamsvivsRalPdvRDGLkPvhRRilyamkelgltadkaykksarivgdvlgkyhPhGdsavYdalvRmaqdfslRyplvdg 98
i p++i++e+++ +l+YamsvivsRalPd +DGLkPvhRRi+yam++lg+t+dk++kksarivg+v+gkyhPhGdsavY+++vRmaq+fs+Rypl+dg
MMSYN1_0007 22 ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDG 119
679*********************************************************************************************** PP
TIGR01063 99 qGnfGsidgDapaamRYtearlakiaeelledidketvdfvanyDgsekePtvlPsrfPnLLvnGssGiavGmatnipphnlgeiidavlllidnedi 196
+GnfGsidgD +aamRYtearlaki+++l++did +tv f++nyD se+eP l + +PnLLvnG+ GiavGmat+ipphnl+e++ a+ ++idn+di
MMSYN1_0007 120 HGNFGSIDGDGAAAMRYTEARLAKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDI 217
************************************************************************************************** PP
TIGR01063 197 sieell.evikGPDfPtgaiilgkkgireayktGrGkvvvRakveieekekdreaiivtelPyqvnkakliekiaelvkekkieGisdirDesdreGi 293
+i+e+l ++i GPDfPtga ++ + +re yktGrG+v++Rak++ ee++k +++ +vte+Pyq+nkak+iekiaelvk+k+ieGi dirDes+ eGi
MMSYN1_0007 218 TIDEILnDHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKIDFEENKK-HDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGI 314
****99459***************************************999.69******************************************** PP
TIGR01063 294 RivielkrdavaevvlnklykltqlqvsfgvnllalvkglPkvlnlkelleafvehrkevitrrtkfeLrkakerahilegllialdniDeviklire 391
Ri+ielk+da+++vvl klyk+t+lq+sf++nll l+++lP +l lk +++ +ve++++vi++r++fe +k +r+hile+l ialdn+D+vi++i++
MMSYN1_0007 315 RIIIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQISVIIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKN 412
************************************************************************************************** PP
TIGR01063 392 sknkeeakeelverfslsevqakaildlrlrrLtaleaekleeelkellekiaelkeiLaseerlleiikeeleeikeqfgdeRrteivaeeeekidi 489
sk++eeak +l+++++++e q kaild+rl+rL +le++k++ e+++++e++++l +++ +e + +++k++l+ei+++fgd+Rrte++ ee +i++
MMSYN1_0007 413 SKTSEEAKVQLTNKYNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDVLINTKEEQDNVLKNQLNEIADKFGDNRRTELIDEELINIED 510
********************************************************999*************************************** PP
TIGR01063 490 edliakeevvvtlsekgyvkrvpvsayrsqkrggkGksglklkeedfiekllvasthdkllffsnkGkvYslkvyqlpeasrtakGkpivnlle.lek 586
e+li + + +++ls++gy++r++ +++r qkrgg+G+s ++ + +d i+ + + +d +lff+n+GkvY+ k+y++ + srta+G pivn+l+ l++
MMSYN1_0007 511 EELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVS-VNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNdLTS 607
************************************96.678889************************************************99*** PP
TIGR01063 587 dekitailsvkefedee.ylllatkkGvvkkvslsefknirskGiiaikldeeDelisvklvkeedevlllskkGkavrfkeeevRalgraarGvrgi 683
++kitail++++++++ yl ++t+kG++k++++sef+ni+ +G+ ai+l+++D+l+sv ++++d v+++ ++Gk++r+ke+ v + +r Gv+++
MMSYN1_0007 608 EDKITAILPLRNNKEKFnYLTFVTQKGMIKRTKISEFENINRNGKKAINLRDNDQLVSVFATTGQDTVFIANESGKVIRIKESVVNPQSRVGGGVKAL 705
*************99877******************************************************************************** PP
TIGR01063 684 klkkedavvslevvkeesllLivtenGygkrtsieeyrlkkRggkGvksikvtekkgkvvgalavkdedelllitsagkliRvsveevsevgrntqGv 781
kl+++d+vv+ + + +++ +v+++G+ k+t i++yr+ R+gkG+k +++++++gk +++ +++d +++i+s g+li+++v+++ +rn++Gv
MMSYN1_0007 706 KLEDDDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFKAIIGARETDLIMIISSDGNLIKTKVSNIPSLSRNASGV 803
************************************************************************************************** PP
TIGR01063 782 rllklkeddkvvsve 796
+ ++l++++++ +++
MMSYN1_0007 804 KAIRLTDNQEINAIT 818
*********999886 PP
>> TIGR01061 parC_Gpos: DNA topoisomerase IV, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 625.9 22.0 1.7e-191 2.5e-188 11 690 .. 32 715 .. 24 721 .. 0.96
2 ! 30.3 0.2 2.3e-11 3.5e-08 589 692 .. 714 818 .. 712 825 .. 0.87
Alignments for each domain:
== domain 1 score: 625.9 bits; conditional E-value: 1.7e-191
TIGR01061 11 gesfgkyakyiiqdralPdirdGlkPvqrrilyamsklgltfdkpykksaktvGeviGkyhPhGdssiyeamvrmsqdWknrevlvemhGnnGsidGd 108
+ f ya +i ralPd++dGlkPv rri+yam++lg+t dkp+kksa+ vGeviGkyhPhGds++ye+mvrm+q++ r l++ hGn GsidGd
MMSYN1_0007 32 RKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGD 129
567999******************************************************************************************** PP
TIGR01061 109 naaamrytearlskiasellkdidkkvvefvpnfddsekePtvlPalfPnllvnGatGiaaGyatdipPhnlnevldalilridqPdcsvdklle.lv 205
aaamrytearl+ki+ +l+kdid ++v+f+ n+d se+eP+ l +PnllvnG+ Gia G at ipPhnl+ev+ a+ id+ d +d++l+ +
MMSYN1_0007 130 GAAAMRYTEARLAKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITIDEILNdHI 227
********************************************************************************************995489 PP
TIGR01061 206 kgPdfPtGgeiqgedeikkayetGkGkviirakieievlkngkeqiviteiPyevnkanlvkkieeiivdkkvagieevrdesdrkGlriiielkkdl 303
gPdfPtG+ + + ++++ y+tG+G viiraki++e +k +++ v+teiPy++nka+++ ki e++ dk ++gi ++rdes+ +G+riiielkkd+
MMSYN1_0007 228 LGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKIDFEENKK-HDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELKKDA 324
9**************************************98.9******************************************************* PP
TIGR01061 304 naekvlnylykktdlqinynlnmvaianrtPilvgllsildayikhskevilnrskyelekakkrleiveGlikaisildeviklirasedksdakek 401
n + vl+ lyk+t lq ++ +n+++++n P+l++l +i+ +y++++ vi++rs +e++k +kr++i+e l a++ +d+vi++i+ s+ ++ak +
MMSYN1_0007 325 NPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQISVIIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVQ 422
************************************************************************************************** PP
TIGR01061 402 liakfeftenqaeaivslrlyrltntdivelkeeeeelekkikeleeiiasekarkkllkkklkelkkkfaqerrskledkikkikieeeelieeedl 499
l +k++f e+q ai+ +rl rl + ++ e +++++++ l+ +i+ ++ + ++lk++l+e+ kf+++rr++l+d+ + i+ie eeli + +
MMSYN1_0007 423 LTNKYNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDVLINTKEEQDNVLKNQLNEIADKFGDNRRTELIDE-ELINIEDEELIPDLKW 519
*************************999999************************************************98.789************* PP
TIGR01061 500 yvvvtkdGyikrtskrsfaaskl....eelglkdddillaqtiinttdklllvtskgnlinlpvhkladirwkdlgehlskkit.ldenetivavevl 592
++++++Gyi+r + f+ k ++ + d + t+ +++d +l++t+ g++ + ++++ + ++ g + + + l ++++i a+ +l
MMSYN1_0007 520 MILLSQEGYIRRINPDEFRIQKRggrgVSVNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNdLTSEDKITAILPL 617
*****************988765111156777888999999999*****************************99998888877799999******99 PP
TIGR01061 593 nefdvdeailvlasklglvkrieltelkikrskavlilklkdedelisavltkkeklivlvsklgyallflveevnvvgakaaGvkgmklkeddevks 690
+ + + ++l ++++ g++kr++++e++ + ++++l+d+d+l+s+++t+++++++++ + g ++ ++ vn ++ + Gvk++kl +dd+v+
MMSYN1_0007 618 RNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRDNDQLVSVFATTGQDTVFIANESGKVIRIKESVVNPQSRVGGGVKALKLEDDDVVVG 715
9988677889999**************999989999*******************************************************9999864 PP
== domain 2 score: 30.3 bits; conditional E-value: 2.3e-11
TIGR01061 589 vevlnefdvdeailvlasklglvkrieltelkikr..skavlilklkdedelisavltkk.eklivlvsklgyallflveevnvvgakaaGvkgmklk 683
v + +f+ +++ +s gl k++ + ++ i k +++++l++ + + +a + +li+++s+ g + +v +++ ++++a Gvk+++l
MMSYN1_0007 714 VGAISSFK--LTHITTVSNKGLFKKTPIDDYRISGrnGKGIKVMNLNQRTGKFKAIIGAReTDLIMIISSDGNLIKTKVSNIPSLSRNASGVKAIRLT 809
55566655..5566778999***********9986679*****************9976637888999****************************** PP
TIGR01061 684 eddevksvl 692
++ e+++++
MMSYN1_0007 810 DNQEINAIT 818
*****9986 PP
>> TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 546.5 14.2 1.4e-167 2e-164 4 671 .. 25 708 .. 22 731 .. 0.89
2 ! 7.3 0.2 0.00017 0.25 610 671 .. 747 809 .. 739 822 .. 0.75
Alignments for each domain:
== domain 1 score: 546.5 bits; conditional E-value: 1.4e-167
TIGR01062 4 ldlrefleeaylnyslyvimdralpfigdGlkpvqrrlvyamselgleasakykksarvvGdvlGkyhphGdsavyealvllaqpfsyryplvdGqGn 101
+d+ + + + +l+y+++vi++ralp+++dGlkpv+rr++yam +lg+ ++ +kksar+vG+v+GkyhphGdsavye++v++aq+fsyrypl+dG Gn
MMSYN1_0007 25 IDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGN 122
78899999****************************************************************************************** PP
TIGR01062 102 fGaiddpksfaamrytesrlskisellleelgkgtvdfrsnfdgtllepkilparlpnlllnGttGiavGmatdipphnlreladaalalidnpkagl 199
fG+id+ + +aamryte+rl+kis+ l+++++ +tv f n+d ++ ep +l lpnll+nGt GiavGmat ipphnl+e++ a+ a idn ++
MMSYN1_0007 123 FGSIDG-DGAAAMRYTEARLAKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITI 219
******.******************************************************************************************* PP
TIGR01062 200 ddvle.ivkGpdfpteaeiidkkeeirkiyetGrGsvrvrarwkkedg....eivisalpyqvskskvieqiaiqlkdkklplvedirdesdhediir 292
d++l+ + Gpdfpt+a +++ +++r+ y+tGrGsv +ra+ + e+ + v++++pyq++k+k+ie+ia+++kdk + + dirdes++ + ir
MMSYN1_0007 220 DEILNdHILGPDFPTGAL-MTNGSKMREGYKTGRGSVIIRAKIDFEENkkhdRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNY-EGIR 315
***9648********985.678899*****************99888777779**************************************65.579* PP
TIGR01062 293 vvivprsnrvdtdavmeslfaltdleksyrlnlnviGldnkpavknlleilqeflvfrrdivirrltyrlekvlkrleileglliaflnldevieiir 390
++i+ + + ++d+v+++l++ t l++s+ +nl + +n p + +l i+++++ f+ +++i+r+ + +k+ kr +ile+l ia n+d+vi+ii+
MMSYN1_0007 316 IIIELK-KDANPDVVLSKLYKYTALQSSFSINLLTL-NNNLPVLLDLKTIIKNYVEFQISVIIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIK 411
*99986.5689********************99665.5789********************************************************9 PP
TIGR01062 391 ee...depkailmerfklseiqaeailnlrlrslakleekkikdeqselekeraqlekilkserklnqlvkkeikadakkygdarrssleereeakav 485
+ +e k +l +++++ e+q +ail++rl++l le ki e +++ + + l+ +++++ + +++k ++++ a k+gd+rr++l + e+ + +
MMSYN1_0007 412 NSktsEEAKVQLTNKYNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDVLINTKEEQDNVLKNQLNEIADKFGDNRRTELIDEELIN-I 508
85333799*****************************************9999999999999999*************************988876.8 PP
TIGR01062 486 sesdlipkepvtiilskmGwvrsakGhdidlk.......slkykaGdsekaavkgksndkvviidskGrsyaldalslss..argqGepltgkll.ld 573
+ +lip i+ls+ G++r + + + s++ d +a gk++d v++ G+ y + ++ s ++G p+ l+ l
MMSYN1_0007 509 EDEELIPDLKWMILLSQEGYIRRINPDEFRIQkrggrgvSVNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSysRTARGLPIVNFLNdLT 606
999*******************9988765433223332256777789999999******************999999876214567999999987355 PP
TIGR01062 574 iGatienilvesedqk..lllasdaGkGfl..vkfndliarnkaGkalislpenakvlaplvveddsdlvvaiteagrllvfpvddl.pelskGkGnk 666
+i+ il +++++ l+ kG++ k + n+ Gk+ i+l +n + ++ + +++ ++ e+g+++ + + + p+ + G G+k
MMSYN1_0007 607 SEDKITAILPLRNNKEkfNYLTFVTQKGMIkrTKISEFENINRNGKKAINLRDNDQLVSVFATTGQDTVF-IANESGKVIRIKESVVnPQSRVGGGVK 703
5599****987776652234566666777733577899999****************9999888877554.456666666554443338888888888 PP
TIGR01062 667 lirik 671
++++
MMSYN1_0007 704 ALKLE 708
77776 PP
== domain 2 score: 7.3 bits; conditional E-value: 0.00017
TIGR01062 610 rnkaGkalislpenakvlaplvveddsdlvvaiteagrllvfpvddlpelsk.GkGnklirik 671
rn G ++++l + + ++++ ++dl++ i++ g l+ +v+++p ls+ G+k ir+
MMSYN1_0007 747 RNGKGIKVMNLNQRTGKFKAIIGARETDLIMIISSDGNLIKTKVSNIPSLSRnASGVKAIRLT 809
556666778887777777777777888999999999999999999999998624688888776 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (834 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 299 (0.0666221); expected 89.8 (0.02)
Passed bias filter: 109 (0.024287); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.20u 0.52s 00:00:00.72 Elapsed: 00:00:00.93
# Mc/sec: 1287.81
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0007 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0008 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0008.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0008/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0008 [L=325]
Description: rnsD 3=Putative Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.0075 13.9 27.2 0.012 13.3 27.1 1.4 1 TIGR03409 urea_trans_UrtB: urea ABC transporter, permease pr
Domain annotation for each model (and alignments):
>> TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.3 27.1 2.6e-06 0.012 5 217 .. 11 229 .. 7 303 .. 0.68
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 2.6e-06
TIGR03409 5 fsglslgsilllvalGLaitfGlmgvinmahGelimiGaYttyvvqqllkkpelvdlsllvalp.laflvsallGlllerlvirhlykRpLd.tLLat 100
+l+l +ll+++l +++ gv+n+a +++iGa + ++ ++l++++ + + + ++ la +++a++ ll i + + t +
MMSYN1_0008 11 TWALALVGVLLFASLS-SLVSEKAGVVNIAVEGMMIIGALVVSILGTYLTSNDNKSNYTQIPIVlLAGVITAVFALLHAFPAITLKANQIISgTAINI 107
5689999999999996.89999**************************99977777777776652688999999888777777655555443244444 PP
TIGR03409 101 fGvslilqqlvrsifgaknveva....apewlsGslelagalalplnrlfil.vlalvvllllllllkrtrlGlrvravvqnrklaaalGintkkvda 193
++l + + + fg++++ +a + ++++ + ++g+ + + l i ++a+++ + l++++k t+ G+r v +n++ +a Gi+++k
MMSYN1_0008 108 LALGLGIFLSTSNWFGKQSQVIAsgysSIDVINITKVVNGKTQQVASMLPIWtIIAIILAIGLFVFFKYTKQGMRYAMVGENPNAIDAAGISVTKYRY 205
444444445566777777755541111456666666666666666666666514567777889999******************************** PP
TIGR03409 194 ltfalGsGiagvaGvaltlignvg 217
l+ l +agv G + + g
MMSYN1_0008 206 LAVILSGFLAGVGGGVFVVTAVSG 229
*****999****998765544333 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (325 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 376 (0.083779); expected 89.8 (0.02)
Passed bias filter: 84 (0.0187166); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 2222.45
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0008 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0009 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0009.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0009/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0009 [L=855]
Description: rnsC 3=Putative Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.8e-07 26.8 17.1 1.6e-06 26.0 17.1 1.5 1 TIGR03409 urea_trans_UrtB: urea ABC transporter, permease pr
Domain annotation for each model (and alignments):
>> TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.0 17.1 3.5e-10 1.6e-06 7 211 .. 74 275 .. 66 369 .. 0.75
Alignments for each domain:
== domain 1 score: 26.0 bits; conditional E-value: 3.5e-10
TIGR03409 7 glslgsilllvalGLaitfGlmgvinm.ahGelimiGaYttyvvqqllkk.pelvdlsllvalplaflvsallGlllerlvirhly..kRpLdtLLat 100
+l ++++++ l +ai f gv n+ a G +++ + +t v+ ++ k +++++ ++++ + ++ ++sa++ +++ +++ l+ + + t+L
MMSYN1_0009 74 SLNWMAVYIVAGLSMAIAFK-SGVFNIgASGQILTATSVATIVFFSISGKdASSITPFMIILMLITCIISAAFIAFIA-GILKALFniHEVVSTILLN 169
3455799************5.699998689******999999988887765666666777777777777777666664.4556665125778999999 PP
TIGR03409 101 fGvslilqqlvrsifgaknvevaapewlsGslelagalalplnrlfi.lvlalvvllllllllkrtrlGlrvravvqnrklaaalGintkkvdaltfa 197
+ v +++ +fg + + ++ s ++ ++l++ n ++i l++al++++++++l+++t lG +++av + ++ +Gin+k+ +++ +
MMSYN1_0009 170 WSVFY----IFKWFFGRYQDFSSGLSYTSKNIPS-DQLSIGSNTVIIpLLIALICVIIIWILFSKTVLGFKLKAVGSSITGSKYIGINVKRQIITSLT 262
98765....6788999999989999999988876.8889999888886788999999***************************************** PP
TIGR03409 198 lGsGiagvaGvalt 211
l +ag+aG +
MMSYN1_0009 263 LSGAVAGIAGFL-S 275
**********62.2 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (855 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 1143 (0.254679); expected 89.8 (0.02)
Passed bias filter: 68 (0.0151515); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.22
# Mc/sec: 5580.99
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0009 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0010 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0010.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0010/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0010 [L=538]
Description: rnsA 3=Putative Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.7e-92 307.0 20.9 5.8e-92 306.7 20.9 1.0 1 TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protei
1.6e-57 193.1 18.6 1.6e-35 120.8 6.9 2.2 2 TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP
2.7e-55 185.3 21.1 7.4e-33 111.8 9.1 2.1 2 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
2.3e-51 173.3 1.0 1.1e-33 114.9 0.3 2.1 2 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
3.7e-51 171.8 18.7 2.9e-32 110.0 8.7 2.1 2 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
4.2e-51 171.9 15.4 2.1e-32 110.6 8.3 2.1 2 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
4e-50 168.1 19.5 3.6e-36 122.5 10.0 2.3 2 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
9.6e-49 163.8 22.0 4.7e-28 96.0 9.4 2.1 2 TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-bi
1.2e-48 163.6 16.0 7.2e-27 92.3 6.9 2.2 2 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
9.4e-48 160.7 12.7 7.1e-35 118.6 5.4 2.3 2 TIGR02673 FtsE: cell division ATP-binding protein FtsE
1.4e-46 157.1 24.4 9.6e-33 111.7 10.8 2.7 2 TIGR04520 ECF_ATPase_1: energy-coupling factor transporter A
5.8e-46 155.3 27.1 4.4e-32 109.7 11.4 2.3 2 TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC tran
8.4e-45 151.2 16.5 3.1e-27 93.1 7.9 2.1 2 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
9.9e-44 147.6 24.9 1.1e-30 104.9 11.3 3.5 4 TIGR03740 galliderm_ABC: lantibiotic protection ABC transpor
1.1e-43 147.6 15.5 2.4e-29 100.5 6.5 2.2 2 TIGR01186 proV: glycine betaine/L-proline transport ATP bind
2.6e-43 146.2 11.0 3e-29 100.2 4.3 2.2 2 TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding pr
2.9e-43 146.0 7.1 3.4e-28 96.6 1.8 2.2 2 TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit,
4.9e-43 145.4 15.5 2.8e-33 113.3 7.1 2.8 2 TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-bindin
9.3e-43 144.3 5.6 1.9e-27 94.2 1.1 2.7 2 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
3.9e-42 142.2 11.6 7.6e-27 92.2 4.4 2.8 3 TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-bi
2.3e-40 136.9 5.4 2.6e-24 84.1 2.0 2.2 2 TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transp
2.8e-40 136.2 4.2 2.9e-27 93.4 0.5 2.1 2 TIGR01288 nodI: nodulation ABC transporter NodI
3.5e-40 136.1 9.3 3.8e-26 89.9 3.4 2.5 2 TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-bindi
2.8e-39 133.1 0.2 2.9e-24 83.5 0.0 2.7 2 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
4e-39 132.7 5.6 5.5e-23 79.4 1.2 2.1 2 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
7.2e-39 131.6 7.8 1.7e-23 80.9 2.5 2.1 2 TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding p
8.6e-39 131.7 6.4 1.3e-23 81.8 0.8 3.1 3 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
2.9e-38 129.6 12.3 3.1e-24 83.7 4.6 2.4 2 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
8.6e-38 128.2 11.3 1.2e-24 85.1 2.7 3.0 2 TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding protei
1.9e-37 126.9 13.9 9.2e-24 82.1 7.0 2.3 2 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
7.2e-37 125.0 20.0 4.6e-25 86.1 6.8 3.1 3 TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system
1e-36 124.5 1.9 2.7e-22 77.2 0.0 2.8 2 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
2.8e-36 122.7 6.8 2.7e-26 90.2 1.3 2.6 2 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
7.2e-36 121.9 6.2 2.1e-20 71.1 1.1 2.3 2 TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system
7.5e-35 118.6 2.3 3.4e-18 64.1 0.3 2.6 2 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
2e-34 115.8 6.3 1.1e-24 83.4 1.7 2.0 2 TIGR01257 rim_protein: rim ABC transporter
2.1e-34 116.7 12.2 8e-26 88.4 2.1 2.5 2 TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC trans
3.4e-34 116.5 11.6 4.4e-20 70.2 4.3 2.6 2 TIGR02769 nickel_nikE: nickel import ATP-binding protein Nik
8.6e-34 114.8 8.9 2.9e-23 80.3 3.8 2.7 2 TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transport
1.3e-33 114.3 12.2 1e-22 78.3 3.8 2.1 2 TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
1.8e-33 113.8 4.8 1e-21 75.4 1.2 2.2 2 TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein
1.3e-32 110.9 10.7 4.5e-25 86.0 2.8 2.3 2 TIGR00958 3a01208: antigen peptide transporter 2
9.7e-32 108.2 1.0 2.1e-19 68.0 0.2 2.6 2 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
6.2e-31 105.6 8.9 1.3e-20 71.7 3.3 2.4 2 TIGR01187 potA: polyamine ABC transporter, ATP-binding prote
1.6e-30 104.2 8.8 4.8e-23 79.5 2.5 3.0 3 TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC trans
1.1e-29 101.2 13.1 5.3e-21 72.5 3.9 2.1 2 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
2.6e-28 96.9 22.8 1e-21 75.1 12.0 2.1 2 TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
3.8e-28 96.4 9.7 9e-17 59.2 5.1 3.1 3 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
1.4e-27 94.5 12.5 2.2e-19 67.5 3.0 2.1 2 TIGR01192 chvA: glucan exporter ATP-binding protein
2.1e-25 87.3 10.8 2.5e-09 34.2 0.6 5.1 5 TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD f
2.2e-24 84.2 22.6 1.5e-14 51.9 8.8 2.8 2 TIGR01978 sufC: FeS assembly ATPase SufC
2.2e-24 83.9 4.1 6e-17 59.3 0.6 3.0 3 TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
4.6e-22 76.3 4.7 6.1e-15 52.8 1.2 2.9 2 TIGR00955 3a01204: pigment precursor permease
3.7e-21 73.7 4.0 8.8e-10 36.4 0.1 3.0 2 TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein
1.1e-17 60.9 4.3 2.3e-10 36.7 0.6 2.1 2 TIGR00956 3a01205: pleiotropic drug resistance family protei
1.4e-15 53.8 6.3 2.4e-10 36.5 1.6 3.1 3 TIGR01271 CFTR_protein: cystic fibrosis transmembrane conduc
3.9e-14 49.8 17.2 1.1e-10 38.4 3.5 4.0 4 TIGR00630 uvra: excinuclease ABC subunit A
5e-11 38.7 11.1 1.9e-09 33.5 2.1 3.1 2 TIGR00957 MRP_assoc_pro: multi drug resistance-associated pr
1.1e-09 35.2 1.6 3.6e-08 30.2 0.4 2.8 2 TIGR00954 3a01203: peroxysomal long chain fatty acyl transpo
Domain annotation for each model (and alignments):
>> TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 306.7 20.9 7.6e-94 5.8e-92 2 495 .. 11 506 .. 10 510 .. 0.94
Alignments for each domain:
== domain 1 score: 306.7 bits; conditional E-value: 7.6e-94
TIGR02633 2 lemkgivkkf..ggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvle 97
+em++i+k f g + a d+i++k++ G+i +l GenGaGkstlm +l g+y +G i +g+e + s+ ++++ Gi ++hq + lv+ +vle
MMSYN1_0010 11 IEMQNITKMFlnGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQP--TSGTIKVNGKEEVISNPIKANKLGIGMVHQHFKLVEVNTVLE 106
69*******977789999**********************************75..47*******99999999999********************** PP
TIGR02633 98 niflGneitlkGglmdydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacv 195
ni+lG e t++ +++++m +++++ l ++ +++ ++d+ G qq vei k l +++ +l++dep+a lt ++++ ll+i+++l++ g + +
MMSYN1_0010 107 NIILGVEQTKSNIFLNKTKMRSELIDIMNKYDLYVDLDAK-IQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTII 203
************9**************************9.********************************************************* PP
TIGR02633 196 yishkleevkavsdtisvirdGqhvatkdaealseddiitmmvGreltslypkepheigdv.ilevenltaydvvnrkikrvddvsfslrrGeilGva 292
+ishk++e+k v++ +vir G+++ d++ +s ++i mvGr+l ++ k + + d+ il+v nlt+ + +n+k+ ++ + +r Gei+ va
MMSYN1_0010 204 FISHKMDEIKQVANIATVIRLGKKIVDLDVSMVSGNEIAEAMVGRKLVEVKNKYKKPLSDEpILDVINLTVKKDTNHKVYGLETFNIKVRPGEIVAVA 301
**********************************************9999998888887765************************************ PP
TIGR02633 293 GlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlavlkk..fakksrideaaelkaieeeik 388
G+ G G+ el+qa+ G + g v+ + ++ n + + g++ +pedr + G++ +++v +ni ++k f++ + i+++a + + ik
MMSYN1_0010 302 GVEGNGQRELIQAITGLVKPVSGGIVYKKI-NIVNSNIKTRYDMGMSHIPEDRHKYGMLLDFSVEENIVSQEIDKkpFSQFGFINKKAISRYAQLIIK 398
*****************9988887777433.33334566677889999*********************999987569999***************** PP
TIGR02633 389 rlkvktaspdlpiar.lsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGklkadl 485
+++++ + +iar lsGGnqqka++ + + + +li+ +ptrG+dvGa +++ i + ++G ai++vs +l ev+ l+dr++vi++Gkl ++l
MMSYN1_0010 399 EFDIRGSRNGTAIARgLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILLVSYDLNEVIALADRIVVINDGKLIGEL 496
*************966********************************************************************************99 PP
TIGR02633 486 vndeltqeqv 495
++ +e++
MMSYN1_0010 497 PAKKAKKEEI 506
8887777765 PP
>> TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 120.8 6.9 2.1e-37 1.6e-35 4 245 .. 23 276 .. 18 284 .. 0.84
2 ! 78.3 4.0 1.8e-24 1.4e-22 7 236 .. 283 527 .. 276 537 .. 0.80
Alignments for each domain:
== domain 1 score: 120.8 bits; conditional E-value: 2.1e-37
TIGR01188 4 gefkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGy.DvvrepdevRr.sigvvpqkasvdedLtarenlellgelyg.... 95
g ++A d++++kv++g++ +l+G nGAGK+t++++L +l +P+sGt +v+G +v+++p ++ + ig+v q+ + e t en+ l e
MMSYN1_0010 23 GAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKeEVISNPIKANKlGIGMVHQHFKLVEVNTVLENIILGVEQTKsnif 120
678999*********************************************736*****9886637********************997654432222 PP
TIGR01188 96 lpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladr 193
l+k+++++ ++++ +l+ d k++ s G+++r+e+ l + ++l DEPt L p+ +++ +++++l+k+g+ti+ +h+++e+ ++a+
MMSYN1_0010 121 LNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIFISHKMDEIKQVANI 218
7888889999999************************************************************************************* PP
TIGR01188 194 vaiidkGk.iiaed....tpeeLKe.rvgkevveverrdikelkkevsllaaeltesl 245
++i+ Gk i+ d + +e+ e vg + vev+++ k l+ e l +++lt ++
MMSYN1_0010 219 ATVIRLGKkIVDLDvsmvSGNEIAEaMVGRKLVEVKNKYKKPLSDEPILDVINLTVKK 276
*******735555522113344433256777777777777766666666666666555 PP
== domain 2 score: 78.3 bits; conditional E-value: 1.8e-24
TIGR01188 7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigv..vpqkasvde...dLtarenlel.......lge 92
++ n+kv+ ge++++ G G G+ +i+ +t+l+kP sG + + ++v+ + R +g+ +p+++ + d + +en++ +++
MMSYN1_0010 283 YGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYDMGMshIPEDRHKYGmllDFSVEENIVSqeidkkpFSQ 380
567889********************************************************995557776666511155778888642222222455 PP
TIGR01188 93 lyglpkkeaeeraeellelvelkeaad..kkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleead 188
+ ++kk++ + a+ +++ +++ ++ ++ +sgG +++ +++ + ++ ++l + Pt GLD+ + +++ + i + k++g +ill + +l+e+
MMSYN1_0010 381 FGFINKKAISRYAQLIIKEFDIRGSRNgtAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILLVSYDLNEVI 478
55566666666677779*****988872245799**************************************************************** PP
TIGR01188 189 kladrvaiidkGkiiaedtpeeL.Kervgkevveverrdikelkkevsl 236
+ladr+ +i+ Gk+i e +++ Ke++g+ ++ + ++ik+ +++++
MMSYN1_0010 479 ALADRIVVINDGKLIGELPAKKAkKEEIGALMIGQTLEQIKQNQVTKTI 527
***************9977766515677777777555555555544433 PP
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 111.8 9.1 9.8e-35 7.4e-33 2 228 .. 12 232 .. 11 253 .. 0.85
2 ! 79.6 4.2 6.2e-25 4.7e-23 6 231 .. 270 500 .. 266 537 .. 0.80
Alignments for each domain:
== domain 1 score: 111.8 bits; conditional E-value: 9.8e-35
TIGR04521 2 klknvsyiYqkgtpfekkalkdvsleiekgefvaiiGhtGsGKstliqhlngLlkptsGeveidgleikakkkkkkklkelrkkvglvFQfpekQLFe 99
+++n++ ++ +g a +d++++++kg++ a++G++G+GKstl+ l gL +ptsG+++++g+e ++ +k+ + +g+v Q+ L e
MMSYN1_0010 12 EMQNITKMFLNGA---IVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEE----VISNPIKANKLGIGMVHQHF--KLVE 100
5666666665554...456789******************************************9974....334446788889****9975..3444 PP
TIGR04521 100 .etvlkdiafgpk....nlglseeeveervkealelvgldeellerspfeLSGGqkrrvAiagvLamepevLvlDEptaGLDpkgrkellellkklkk 192
+tvl++i+ g + n+ l++++++++ +++++ +l +l + + ++S G ++rv i vL + ++Lv+DEpta L p+ ++ll+++k+l+k
MMSYN1_0010 101 vNTVLENIILGVEqtksNIFLNKTKMRSELIDIMNKYDLYVDL-DAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQK 197
3789999999876111266688999999999999999999886.56678************************************************* PP
TIGR04521 193 ekgktvilvtHsmedvaeladrvivlkkGkvvldgt 228
+ gkt+i+++H+m+++ ++a+ +v++ Gk ++d +
MMSYN1_0010 198 A-GKTIIFISHKMDEIKQVANIATVIRLGKKIVDLD 232
9.***************************9887755 PP
== domain 2 score: 79.6 bits; conditional E-value: 6.2e-25
TIGR04521 6 vsyiYqkgtpfekkalkdvsleiekgefvaiiGhtGsGKstliqhlngLlkptsGeveidgleika.kkkkk.....kklkelrkkvglvFQfp.ekQ 96
++ + +k+t+ + l+ +++++ ge+va+ G G G liq + gL+kp sG ++ ++++i + + k++ +++ e r+k g++ f+ e+
MMSYN1_0010 270 INLTVKKDTNHKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNsNIKTRydmgmSHIPEDRHKYGMLLDFSvEEN 367
67788999*************************************************988888765222222111113466779*********83555 PP
TIGR04521 97 LFeetvlkdiafgp.knlgl.seeeveervkealelvgld.eellerspfeLSGGqkrrvAiagvLamepevLvlDEptaGLDpkgrkellellkklk 191
+ ++ +i p +++g+ +++ +++ ++ +++ ++ ++ + + LSGG++++ + + + ++L++ pt GLD + +++ + + k k
MMSYN1_0010 368 IVSQ----EIDKKPfSQFGFiNKKAISRYAQLIIKEFDIRgSRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEK 461
5555....555444256775267788999999********88888889999*******97777789999*************************9988 PP
TIGR04521 192 kekgktvilvtHsmedvaeladrvivlkkGkvvldgtpee 231
++ g++++lv+ ++++v++ladr++v+++Gk++ + ++
MMSYN1_0010 462 EK-GRAILLVSYDLNEVIALADRIVVINDGKLIGELPAKK 500
87.****************************997655544 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 114.9 0.3 1.5e-35 1.1e-33 320 526 .. 9 218 .. 1 221 [. 0.89
2 ! 57.2 0.0 4.7e-18 3.6e-16 307 528 .. 254 486 .. 234 487 .. 0.79
Alignments for each domain:
== domain 1 score: 114.9 bits; conditional E-value: 1.5e-35
TIGR02857 320 sslelenvsvay.egrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvnga.elaeldadswrkqiawvpQkPllfe.gtvae 414
++e++n++ ++ +g+ a +++ ++v+ g + alvG+ GaGKstl+++l g+ +pt+G+i+vng+ e+ + ++ + i+ v+Q+ l+e +tv+e
MMSYN1_0010 9 YAIEMQNITKMFlNGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKeEVISNPIKANKLGIGMVHQHFKLVEvNTVLE 106
389*****999978888999*******************************************99845666666667778********999868**** PP
TIGR02857 415 nirlarkdaseae.vkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtv 510
ni l+ ++ +++ +++ +r +l +++++ + l ++ + + +S+G +qR+ + ++l+r+a++l++DEPta L +++ + +l+++++l g+t+
MMSYN1_0010 107 NIILGVEQTKSNIfLNKTKMRSELIDIMNKYD--LYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQkAGKTI 202
****9877665543899999********9998..67799****************************************************9789*** PP
TIGR02857 511 llvaHrlalaeladki 526
++++H+ ++++ +i
MMSYN1_0010 203 IFISHKMDEIKQVANI 218
******9999888776 PP
== domain 2 score: 57.2 bits; conditional E-value: 4.7e-18
TIGR02857 307 peaekapltaaassslelenvsvay.egrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkq.iawv 401
+ + k+pl +++ l + n++v+ ++k l+ ++++v+pge+va++G G G l++++ g+v+p +G i+ + ++ + + ++ ++ ++++
MMSYN1_0010 254 KNKYKKPLSDEP--ILDVINLTVKKdTNHKvYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYDMgMSHI 349
344455666666..59999999998666667889************************************************9999998887669*** PP
TIGR02857 402 pQk....Pllfegtvaenirlarkdaseae....vkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDa 491
p +l++ +v eni ++ d + +++ + ++ ++k+ + ++ ++gLSgG++q+ + r + +d++ll++ Pt LD
MMSYN1_0010 350 PEDrhkyGMLLDFSVEENIVSQEIDKKPFSqfgfINKKAISRYAQLIIKEFDIRGSRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDV 447
9752222679**********999999988745555555555555556666654444444445789********************************9 PP
TIGR02857 492 eteaevlealrela.egrtvllvaHrl.alaeladkivv 528
+ ++v +++ + +gr++llv+ +l ++++lad+ivv
MMSYN1_0010 448 GAIENVHSHILKEKeKGRAILLVSYDLnEVIALADRIVV 486
9988888776555449*********972578999**997 PP
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.0 8.7 3.8e-34 2.9e-32 2 226 .. 11 229 .. 10 244 .. 0.87
2 ! 67.6 2.3 3.3e-21 2.5e-19 7 238 .. 274 506 .. 266 510 .. 0.85
Alignments for each domain:
== domain 1 score: 110.0 bits; conditional E-value: 3.8e-34
TIGR02315 2 levenlskvypngkq.alknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvle 98
+e++n++k++ ng a +++ +++kkG++ a++G+ GaGkstl+ + +l +++sg+i+++gke ++ + ++ + igm+ q+++l+e +tvle
MMSYN1_0010 11 IEMQNITKMFLNGAIvANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKE--EVISNPIKANKLGIGMVHQHFKLVEVNTVLE 106
7999******9887515678******************************************997..456788999999******************* PP
TIGR02315 99 nvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekg 196
n++ g +ks++ l +++ +++ ++++++ +l + + +++s G qqRv i + l +++++++ DEP+a L p++ + +++++k++ + g
MMSYN1_0010 107 NIILGVEQTKSNIF----LNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQ-KAG 199
**988655555443....44566677889***************************************************************95.679 PP
TIGR02315 197 itvivnlHqvdlakkyadrivglkageivf 226
t+i H++d k+ a+ ++ g+ +
MMSYN1_0010 200 KTIIFISHKMDEIKQVANIATVIRLGKKIV 229
9999999****9999888776666666555 PP
== domain 2 score: 67.6 bits; conditional E-value: 3.3e-21
TIGR02315 7 lskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklk.kkelrklrkkigmifqeynlierltvlenvLsg 103
++k +++ l+ n+++++Ge+vav G G G+ l+++i +lv++ sg i+ ++ ++ + + k + ++i +y ++ +v en++s
MMSYN1_0010 274 VKKDTNHKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNiKTRYDMGMSHIPEDRHKYGMLLDFSVEENIVSQ 371
344455556679************************************************9998455555667788888899**************** PP
TIGR02315 104 rlgakstlksllglfseed.kekAlelLervglaelaa..kradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgit 198
+ +k++ + +g+ +++ + A +++++++ + a LsGG+qq+ + R + ++ +l+++ P+ LD + ++v + + + kekg +
MMSYN1_0010 372 EIDKKPFSQ--FGFINKKAiSRYAQLIIKEFDIRGSRNgtAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILK-EKEKGRA 466
*******99..55555554156688899*****988761155789***************************************987776.5889999 PP
TIGR02315 199 vivnlHqvdlakkyadrivglkageivfdgasselddevl 238
+++ ++++ + + adriv +++g+++ + ++++ ++e++
MMSYN1_0010 467 ILLVSYDLNEVIALADRIVVINDGKLIGELPAKKAKKEEI 506
999999********************99999998888776 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.6 8.3 2.8e-34 2.1e-32 3 233 .. 11 240 .. 9 248 .. 0.89
2 ! 65.8 0.6 1.4e-20 1e-18 2 223 .. 266 495 .. 265 508 .. 0.87
Alignments for each domain:
== domain 1 score: 110.6 bits; conditional E-value: 2.8e-34
TIGR03411 3 Levedvsvsf..dgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenl 98
+e+++++ f +++ a +d++++v++g++++++G nGaGk+tl+ ++ G +p++G+++++gk+ + + + +lGig q+ ++ e tvlen+
MMSYN1_0010 11 IEMQNITKMFlnGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPIKANKLGIGMVHQHFKLVEVNTVLENI 108
5677787777545678999*********************************************77778888999*********************** PP
TIGR03411 99 elalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelake.rsv 195
l +++ ks + l +++ ++++ ++++ L d+k + +s G +q++ei +l +++++l+ DeP+a +t + ++ +++k+l+k +++
MMSYN1_0010 109 ILGVEQTKSNIFL----NKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAgKTI 202
*****99986543....344556667788999999999999999***********************************************985389* PP
TIGR03411 196 vvvehDmefvrelaekvtvlheGkvlaeGsldevqade 233
+ + h m+ ++++a+ tv+ Gk +++ ++ v+ +e
MMSYN1_0010 203 IFISHKMDEIKQVANIATVIRLGKKIVDLDVSMVSGNE 240
*************************9999998887765 PP
== domain 2 score: 65.8 bits; conditional E-value: 1.4e-20
TIGR03411 2 iLevedvsvsfdg...fkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigR...kfqkpsvfeelt 93
iL+v +++v+ d+ + l+ ++++v++ge+ ++ G G G+ l+ +itG ++p +G +++k+ ++++ + ++ +G++ k ++ +++
MMSYN1_0010 266 ILDVINLTVKKDTnhkVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYDMGMSHipeDRHKYGMLLDFS 363
577778888777622245678999************************************************9999999987622145677788999* PP
TIGR03411 94 vlenlelalkadksvlallfarlskeekerieevleligLeekad..kkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetekt.aellke 188
v en+ ++ + dk+ ++++ + +k+ ++ + +++ ++ +++ + a Ls G++q +g + ++ +ll++ P+ G+ e++ +++lke
MMSYN1_0010 364 VEENI-VSQEIDKKPFSQFGFINKKAISRYAQLIIKEFDIRGSRNgtAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVhSHILKE 460
****8.899************999999999999***9999887762155788*******************************9988776527899** PP
TIGR03411 189 lakersvvvvehDmefvrelaekvtvlheGkvlae 223
+k r++++v +D++ v +la+++ v+++Gk++ e
MMSYN1_0010 461 KEKGRAILLVSYDLNEVIALADRIVVINDGKLIGE 495
*******************************9876 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 122.5 10.0 4.7e-38 3.6e-36 1 202 [. 13 217 .. 13 223 .. 0.89
2 ! 50.9 1.9 4.1e-16 3.2e-14 6 205 .. 276 486 .. 269 487 .. 0.79
Alignments for each domain:
== domain 1 score: 122.5 bits; conditional E-value: 4.7e-38
TIGR03608 1 lkniskkfkdkeil..kklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveen 96
++ni+k f + +i+ +++ +k++kG++ a+vGe G+GKstl+ il l ++ sg++ ++gke+ + k + +g + q f+L+e +tv en
MMSYN1_0010 13 MQNITKMFLNGAIVanDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPI---KANKLGIGMVHQHFKLVEVNTVLEN 107
689*****9999983346788899***************************************6654444...4456689****************** PP
TIGR03608 97 lelalklkkk....skkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiiv 190
+ l+++ +k +k++++++++++++k +l+ +l+ ki ++s G +qRv + ++l +++++++ DEPt+ L +++ + +l+++k+l+++gktii++
MMSYN1_0010 108 IILGVEQTKSniflNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIFI 205
******99962222577888899999************************************************************************ PP
TIGR03608 191 tHdpevaekadr 202
H + +++ +
MMSYN1_0010 206 SHKMDEIKQVAN 217
**9976666554 PP
== domain 2 score: 50.9 bits; conditional E-value: 4.1e-16
TIGR03608 6 kkfkdkei..lkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelal 101
k ++k + l+ +++k+ Ge+va+ G G G+ l+ ++ l k+ sg +++++ + + + k+ ++ +++ +++l + +veen+
MMSYN1_0010 276 KDTNHK-VygLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYDMGMSHIPEDRHKYGMLLDFSVEENIVSQE 372
444444.324899******************************************9996665555566666666655566799999999999985443 PP
TIGR03608 102 klkk.......kskkekekkkkevlekvglekklk.kki.yelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiiv 190
+ kk ++kk ++ + ++++++++ + + + i lsgG++q+ + r + k+ +l++ Pt LD e+v + + + ke+g+ i++v
MMSYN1_0010 373 IDKKpfsqfgfINKKAISRYAQLIIKEFDIRGSRNgTAIaRGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILLV 470
3332222222256777778888899*****665551344157******************************************************** PP
TIGR03608 191 tHd.pevaekadrvie 205
d +ev adr++
MMSYN1_0010 471 SYDlNEVIALADRIVV 486
**94579999999986 PP
>> TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 96.0 9.4 6.2e-30 4.7e-28 2 227 .. 11 241 .. 10 250 .. 0.92
2 ! 73.7 4.7 4.2e-23 3.2e-21 17 221 .. 285 500 .. 267 516 .. 0.86
Alignments for each domain:
== domain 1 score: 96.0 bits; conditional E-value: 6.2e-30
TIGR04406 2 lkaenlaksykkrkvv..kdvslevksgeivGllGPnGaGkttsfymivGlvkadaGkvlldded.itklplherarlGigylpqeasifrkltveen 96
++++n++k + + +v +d++++vk+g+i l+G nGaGk+t + ++ Gl ++++G++++++++ + + p++ +lGig + q + tv en
MMSYN1_0010 11 IEMQNITKMFLNGAIVanDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEeVISNPIK-ANKLGIGMVHQHFKLVEVNTVLEN 107
5789******9999884458******************************************97526777775.679********************* PP
TIGR04406 97 lkavlelred...ldkeereekleelleeleiahlrekkaaslsGGerrrveiaralaaePkfilldePfagvdPiavsdikklikllkergiGvlit 191
+ +e ++ l+k++ +++l ++++++++ ++k +++s G ++rvei ++l + +++++deP a + P ++ + +++k+l++ g ++
MMSYN1_0010 108 IILGVEQTKSnifLNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIFI 205
*99999888778899*********************************************************************************** PP
TIGR04406 192 dhnvretldivdrayivseGkvlaeGsaeeivanek 227
h + e+ ++++ a ++ Gk +++ +++ + ne
MMSYN1_0010 206 SHKMDEIKQVANIATVIRLGKKIVDLDVSMVSGNEI 241
*********************999988776665554 PP
== domain 2 score: 73.7 bits; conditional E-value: 4.2e-23
TIGR04406 17 vkdvslevksgeivGllGPnGaGkttsfymivGlvkadaGkvllddeditklplherarlGigylpqeas...ifrkltveenlkavlelred..... 106
++ ++++v+ geiv + G +G G+ i+Glvk+ +G ++ ++ +i + ++++r +G++++p + ++ +++veen+ e+ ++
MMSYN1_0010 285 LETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYDMGMSHIPEDRHkygMLLDFSVEENIVS-QEIDKKpfsqf 381
5678999***********************************************************997612266778*****975.46666567778 PP
TIGR04406 107 ..ldkeereekleelleeleiahlrekka..aslsGGerrrveiaralaaePkfilldePfagvdPiavsdikklikllkergiGvlitdhnvretld 200
++k+++++ ++ +++e++i r+ +a lsGG+++++ + r + + +++++ +P g+d a++++++ i + ke+g +l+ ++ +e++
MMSYN1_0010 382 gfINKKAISRYAQLIIKEFDIRGSRNGTAiaRGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILLVSYDLNEVIA 479
888999999999999******999987651157***************************************************************** PP
TIGR04406 201 ivdrayivseGkvlaeGsaee 221
++dr ++++Gk++ e a++
MMSYN1_0010 480 LADRIVVINDGKLIGELPAKK 500
*************98765544 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 92.3 6.9 9.5e-29 7.2e-27 2 228 .. 12 245 .. 11 246 .. 0.89
2 ! 76.7 1.7 5.4e-24 4.1e-22 16 227 .. 285 509 .. 267 511 .. 0.82
Alignments for each domain:
== domain 1 score: 92.3 bits; conditional E-value: 9.5e-29
TIGR03410 2 evenlevaYgesevl..rdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenle 97
e++n++ ++ + ++ d++++v+kg++ a++G ng+Gk+tl+ l gl++ +sG+i+++g++ ++p + k Gi+ v q +++ tv en+
MMSYN1_0010 12 EMQNITKMFLNGAIVanDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPIKANKLGIGMVHQHFKLVEVNTVLENII 109
5678888887777773358******************************************************************************* PP
TIGR03410 98 lglealkkk....ekkipeeiyelFPvlkem..lkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillve 189
lg+e++k++ ++k+ e+ ++ + l+ + d+s G qq + i ++L + +l+ DePt + P i+ + +++k+l+k + +i+ +
MMSYN1_0010 110 LGVEQTKSNiflnKTKMRSELIDIMNKYDLYvdLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKA-GKTIIFIS 206
******998888777888877777655333311566789***********************************************986.77999999 PP
TIGR03410 190 qvldfaleladrylvlerGevvaegekeeldeekvkkll 228
+++d +++a+ +v+ G+ + + + + ++ +++ +++
MMSYN1_0010 207 HKMDEIKQVANIATVIRLGKKIVDLDVSMVSGNEIAEAM 245
********************9999999888888887765 PP
== domain 2 score: 76.7 bits; conditional E-value: 5.4e-24
TIGR03410 16 lrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkl...tveenlelg.lealkkk... 106
l+ +++v+ ge+vav G g G+ l++a++gl+k sG i ++ +i +++ ++r ++G++++p r+ + l +veen+ +++++ +
MMSYN1_0010 285 LETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYDMGMSHIPEDRHKYGMLldfSVEENIVSQeIDKKPFSqfg 382
667799***************************************************************9876543449****965414444433444 PP
TIGR03410 107 ..ekkipeeiyelFPvlkemlkRrgGd.....LsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfale 197
+kk + + +l +++ r G LsGG qq+ ++R + ++ ll++ Pt G+ i+++++ i + +kek+ aillv l+ + +
MMSYN1_0010 383 fiNKKAISRYAQLIIKEFDIRGSRNGTaiargLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILK-EKEKGRAILLVSYDLNEVIA 479
444444444444444444555555553344559***************************************99988.566899************** PP
TIGR03410 198 ladrylvlerGevvaegekeeldeekvkkl 227
ladr++v++ G+++ e ++++++e++ +l
MMSYN1_0010 480 LADRIVVINDGKLIGELPAKKAKKEEIGAL 509
*****************9999999998765 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 118.6 5.4 9.3e-37 7.1e-35 2 206 .. 11 218 .. 10 227 .. 0.90
2 ! 46.4 0.7 1.1e-14 8.7e-13 7 214 .] 274 491 .. 268 491 .. 0.77
Alignments for each domain:
== domain 1 score: 118.6 bits; conditional E-value: 9.3e-37
TIGR02673 2 ielekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvle 98
ie+++++k + +++ a +d+++k++kg++ l+G+ GaGk+tl+ +l+g +p++G+++v+g++ ++ ++ + + + ig+v+q fkl++ tvle
MMSYN1_0010 11 IEMQNITKMFLnGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKE--EVISNPIKANKLGIGMVHQHFKLVEVNTVLE 106
899******98356788899*******************************************97..5667788888889****************** PP
TIGR02673 99 nvalalevrgk....keeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttviv 192
n+ l +e +++ ++++++++ +++++ +l +a+ + +s G qqRv i + + +k ++l+ DePt l +++ +++l+++k+l+k+G t+i+
MMSYN1_0010 107 NIILGVEQTKSniflNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIF 204
****999876522226889999999999********************************************************************** PP
TIGR02673 193 athdeelvervkkr 206
+h+ + +++v++
MMSYN1_0010 205 ISHKMDEIKQVANI 218
****9999998653 PP
== domain 2 score: 46.4 bits; conditional E-value: 1.1e-14
TIGR02673 7 vskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrG.....evevagedvar...lrerelpllRrkigvvfqDfkllkdrtv 96
v+k +++v L+ ++k+++ge++ + G G G+ l++ ++g kp +G ++++ ++++++ + +++p R+k g++ Df + ++ v
MMSYN1_0010 274 VKKDTNHKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGgivykKINIVNSNIKTrydMGMSHIPEDRHKYGMLL-DFSVEENI-V 369
77778889999***************************************9333333455555555311133455566666666543.55543333.3 PP
TIGR02673 97 lenv.alale.vrgkkeeeiqkrveevlelvgledka..kalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttv 190
+ + +++ ++++i++ + +++ +++ +a+++ lsgG+qq+ + R i ++ +ll++ Pt lD e++ + + + +++G ++
MMSYN1_0010 370 SQEIdKKPFSqFGFINKKAISRYAQLIIKEFDIRGSRngTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAI 467
3333133443133457888999999999**9*9865511577899***************************************998889999***** PP
TIGR02673 191 ivathdeelvervkkrvlelekgk 214
+++++d + v + + r++ +++gk
MMSYN1_0010 468 LLVSYDLNEVIALADRIVVINDGK 491
*******99999999999999985 PP
>> TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 111.7 10.8 1.3e-34 9.6e-33 1 216 [. 11 229 .. 11 245 .. 0.91
2 ! 50.6 5.3 5.2e-16 4e-14 12 226 .. 278 504 .. 267 537 .. 0.73
Alignments for each domain:
== domain 1 score: 111.7 bits; conditional E-value: 1.3e-34
TIGR04520 1 ievenvsfkYeeeekkalkdvsleiekgefvaiiGhNGsGKsTlakllnglllpeegkvlvdgletleeenlweirkkvglvfqnPdnqlvg.atvee 97
ie++n++ + + + a +d++++++kg+ a++G+NG+GKsTl +l gl++p++g+++v+g e + ++ ++ + +g+v q+ lv +tv e
MMSYN1_0010 11 IEMQNITKMFLNGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPIKANKLGIGMVHQHFK--LVEvNTVLE 106
7899999999999999********************************************************************875..553268999 PP
TIGR04520 98 dvaFglE....NlgvpreeikkrveealkkvgleefrkkepkkLSGGqkqrvaiagvlalepeiiilDEatsmLDpkgrkevletvkklkkeekltvi 191
++ g+E N+ ++++++++ + ++++k +l +++ + +S G +qrv i vl +++i+++DE+t++L p+ +++l+++k+l+k ++t+i
MMSYN1_0010 107 NIILGVEqtksNIFLNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKA-GKTII 203
999999966667889**************************************************************************975.56*** PP
TIGR04520 192 sitHdleeaveadrv.ivlekgkiva 216
i+H+++e+ + ++ v++ gk +
MMSYN1_0010 204 FISHKMDEIKQVANIaTVIRLGKKIV 229
*********98655526777777665 PP
== domain 2 score: 50.6 bits; conditional E-value: 5.2e-16
TIGR04520 12 e.eekkalkdvsleiekgefvaiiGhNGsGKsTlakllnglllpeegkvlvdgletlee..........enlweirkkvglvfq.nPdnqlvgatvee 97
+ ++ + l+ +++++ ge va+ G G G+ l + ++gl++p +g ++ ++++ +++ +++ e r+k g+++ ++ +v++ +++
MMSYN1_0010 278 TnHKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSniktrydmgmSHIPEDRHKYGMLLDfSVEENIVSQEIDK 375
32566789**************************************9998777764443111111111123444578888887634566677777655 PP
TIGR04520 98 dvaFglENlgvpreeikkrveealkkvgleefrkke..pkkLSGGqkqrvaiagvlalepeiiilDEatsmLDpkgrkevletvkklkkeekltvisi 193
F+ ++++ i++ + ++k+ +++ r+ + ++ LSGG++q+ + + + +++i+ +t LD + ++v + + k k e++ +++++
MMSYN1_0010 376 K-PFSQ-FGFINKKAISRYAQLIIKEFDIRGSRNGTaiARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEK-EKGRAILLV 470
4.3432.2347788899999999999999988876512678********999999*****************************9966.6677***** PP
TIGR04520 194 tHdleeav.eadrvivlekgkivaegtpkeifsk 226
+ dl+e++ adr++v+++gk++ e +k+ ++
MMSYN1_0010 471 SYDLNEVIaLADRIVVINDGKLIGELPAKKAKKE 504
******8527***********9987666655443 PP
>> TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.7 11.4 5.7e-34 4.4e-32 3 226 .. 11 243 .. 9 263 .. 0.87
2 ! 51.4 7.7 3.3e-16 2.5e-14 16 245 .. 283 528 .. 267 538 .] 0.76
Alignments for each domain:
== domain 1 score: 109.7 bits; conditional E-value: 5.7e-34
TIGR03522 3 vevsdlskly..gkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavage.dvlknslevrkn.iGylPehnPlyldlyvreyl 96
+e+++++k++ g a d+++ +++kG+i ++G nGaGkstlm il g +++sG+++v+g+ +v+ n+++++k iG + +h l + v e +
MMSYN1_0010 11 IEMQNITKMFlnGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKeEVISNPIKANKLgIGMVHQHFKLVEVNTVLENI 108
88999***99334445669*******************************************96379******99855*********99888888865 PP
TIGR03522 97 .....efsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakd.ktvils 188
+ +++++ +++k+++++ +++++ l ++ ki+++s G +qrv + k l + ++l++dePt+ l P q+ + +++k++ k+ kt+i+
MMSYN1_0010 109 ilgveQTKSNIFL-NKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAgKTIIFI 205
2233245566665.45888899999***************************************************************9966****** PP
TIGR03522 189 thimqevealcdrviiinkGkivadkkleelkaaekkk 226
+h m e++ + + +i Gk ++d +++ ++ e ++
MMSYN1_0010 206 SHKMDEIKQVANIATVIRLGKKIVDLDVSMVSGNEIAE 243
************************99998886655544 PP
== domain 2 score: 51.4 bits; conditional E-value: 3.3e-16
TIGR03522 16 kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniG..ylPehnPly...ldlyvreylefsa......al 102
+ l+ ++++Geiv G +G G+ l++ +tg +k+ sG + +++++++++++ r +G ++Pe y ld+ v e + + +
MMSYN1_0010 283 YGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYDMGmsHIPEDRHKYgmlLDFSVEENIVSQEidkkpfSQ 380
45777888999************************************************99984469*977655444899999987544211111134 PP
TIGR03522 103 yklkgrklkkrveel.ielvGlkaeqh.kki.galskGyrqrvGlakallhdPkvlildePttGldPnqlveir.evikeiakdktvilsthimqeve 196
+++ ++k +r ++l i++ ++ + i ls G +q++ + + + d ++li+ +Pt Gld + ++ +++ke k ++++l ++ ++ev
MMSYN1_0010 381 FGFINKKAISRYAQLiIKEFDIRGSRNgTAIaRGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHsHILKEKEKGRAILLVSYDLNEVI 478
5555555556666651566677655441344156*************************************9973577999***************** PP
TIGR03522 197 alcdrviiinkGkivadkkleelkaaekkkvievefeeeidlq.llekle 245
al dr+++in Gk++ + ++ k+ e ++ ++ e+i+++ + ++++
MMSYN1_0010 479 ALADRIVVINDGKLIGELPAKKAKKEEIGALMIGQTLEQIKQNqVTKTIK 528
***************99888888776666666666667776540333333 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 93.1 7.9 4.1e-29 3.1e-27 459 682 .. 4 230 .. 1 239 [. 0.88
2 ! 63.3 1.3 4.1e-20 3.1e-18 477 685 .. 279 498 .. 259 505 .. 0.86
Alignments for each domain:
== domain 1 score: 93.1 bits; conditional E-value: 4.1e-29
TIGR03375 459 reklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadl.rrnigyvpqdvtLfy. 554
++k+ +ie++n++ + + a +++++k+k G+ a++G++G+GKstl+ +l gly+pt+G+++++g + +p + + ig+v+q +L
MMSYN1_0010 4 EQKIDYAIEMQNITKMFLNGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPIKAnKLGIGMVHQHFKLVEv 101
6788999***************************************************************998888887761569**********963 PP
TIGR03375 555 GtlrdNialgapaaedeellraae.laGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella 651
t+ +Ni lg ++++ + l+ + ++ + ++++k +dl + + +S G +q v + ++l+++ +il++DEPt+ l ++ ++ll+ +k+l +
MMSYN1_0010 102 NTVLENIILGVEQTKSNIFLNKTKmRSELIDIMNKYDLYVDL--DAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQK 197
79**********999998887665156788888876655554..456789**********************************************99 PP
TIGR03375 652 .dkTlvlvtHrtslLelvdri.ivldkGrivad 682
+kT++ ++H++ ++ v i v++ G+ ++d
MMSYN1_0010 198 aGKTIIFISHKMDEIKQVANIaTVIRLGKKIVD 230
9***********999888777247777776665 PP
== domain 2 score: 63.3 bits; conditional E-value: 4.1e-20
TIGR03375 477 eeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadl.rrnigyvpqdv....tLfyGtlrdNialgapaae 569
+++ L++ ++k++pGe va+ G G G l + ++gl++p +G +++ ++i + + ++ ++++p d +L+ ++ +Ni+ ++ +
MMSYN1_0010 279 NHKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRyDMGMSHIPEDRhkygMLLDFSVEENIVSQEIDKK 376
556677999**********************************************988765431456778999863333699***********99999 PP
TIGR03375 570 deellraaelaGvtefvkkhpkGldlqigerG....esLSgGQrqavalaRallkdppillLDEPtsalDnsseekl.lerLkelladkTlvlvtHr. 661
+ + +++ ++++++ k +d + +G ++LSgG +q + R + kd ++l++ Pt lD + e++ + Lke +++ ++lv+
MMSYN1_0010 377 PFSQFGFINKKAISRYAQLIIKEFDIRGSRNGtaiaRGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVhSHILKEKEKGRAILLVSYDl 474
9999999******************9999988444458********************************9886665156788888899999999862 PP
TIGR03375 662 tslLelvdriivldkGrivadGpk 685
++++ l+dri+v+++G+++ + p
MMSYN1_0010 475 NEVIALADRIVVINDGKLIGELPA 498
68****************977665 PP
>> TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 104.9 11.3 1.5e-32 1.1e-30 2 202 .. 12 227 .. 11 243 .. 0.83
2 ? -0.4 0.0 2.3 1.7e+02 7 31 .. 258 285 .. 252 289 .. 0.71
3 ! 18.1 0.3 5.2e-06 0.0004 14 64 .. 283 333 .. 267 344 .. 0.83
4 ! 32.8 0.7 1.6e-10 1.2e-08 125 214 .. 415 506 .. 384 514 .. 0.84
Alignments for each domain:
== domain 1 score: 104.9 bits; conditional E-value: 1.5e-32
TIGR03740 2 etknlskkfkkqavv..nnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewt.....rkdlkkiGsliesPalyenltarenlk 92
e++n++k f + a+v +++++kvkk ++++l+G nGaGkstl+ +l Gl ++tsG i+++g+e + + iG + ++ l e t en+
MMSYN1_0010 12 EMQNITKMFLNGAIVanDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVisnpiKANKLGIGMVHQHFKLVEVNTVLENII 109
789********9999434699*****************************************975411111223335888878888888888888864 PP
TIGR03740 93 v..rtl......llglpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilssh 182
+ + + +++ +s++ +++++ dl + k ++ s+G++qr+ i l +k ++l++dePt l P iq l +++k +++ G t+i+ sh
MMSYN1_0010 110 LgvEQTksniflNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIFISH 207
31133311111122334577788999************************************************************************ PP
TIGR03740 183 ilsevelladhiGiiseGkl 202
+ e++++a+ +i+ Gk
MMSYN1_0010 208 KMDEIKQVANIATVIRLGKK 227
************99998875 PP
== domain 2 score: -0.4 bits; conditional E-value: 2.3
TIGR03740 7 skkfkkqavvnnvslkvkk...nsvygl 31
+k ++ +++ ++l+vkk ++vygl
MMSYN1_0010 258 KKPLSDEPILDVINLTVKKdtnHKVYGL 285
56677788999******97333578887 PP
== domain 3 score: 18.1 bits; conditional E-value: 5.2e-06
TIGR03740 14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrew 64
++ ++kv+ ++ ++ G++G G+ l++ +tGl+++ sG i+++ ++
MMSYN1_0010 283 YGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINI 333
347899**************************************9877665 PP
== domain 4 score: 32.8 bits; conditional E-value: 1.6e-10
TIGR03740 125 fslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklkye..kkidkdedl 214
+s G +q+ + + ++ +lli+ +Pt Gld i+++ i +ekG +++l s+ l ev lad i +i++Gkl e +k k+e++
MMSYN1_0010 415 LSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILLVSYDLNEVIALADRIVVINDGKLIGElpAKKAKKEEI 506
56677777777777888899*********************************************************975522455555555 PP
>> TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.5 6.5 3.1e-31 2.4e-29 4 207 .. 23 226 .. 21 250 .. 0.88
2 ! 52.3 1.6 1.5e-16 1.1e-14 8 209 .. 284 493 .. 276 505 .. 0.84
Alignments for each domain:
== domain 1 score: 100.5 bits; conditional E-value: 3.1e-31
TIGR01186 4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellk. 100
G+ ++ +d+ +++++G+i ++G G+Gkstl+ +l l +Pt+G i ++G++ + ++ + + i+mv q++ l+ t+l+ni lg+e +k
MMSYN1_0010 23 GAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPIKA---NKLGIGMVHQHFKLVEVNTVLENIILGVEQTKs 117
6778899********************************************99877777776...6779*************************9983 PP
TIGR01186 101 ...ideqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealr 195
+++ + + + + + dl d+ +++s G qqrv +++ l + d+l+ de+ + l P ++l + +++lqk kti+fi+h +de +
MMSYN1_0010 118 nifLNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQK-AGKTIIFISHKMDEIKQ 214
3223456666666777788888777788899**********************************************996.69*************99 PP
TIGR01186 196 lgdrivilkaGe 207
+++ +++ G+
MMSYN1_0010 215 VANIATVIRLGK 226
999888888774 PP
== domain 2 score: 52.3 bits; conditional E-value: 1.5e-16
TIGR01186 8 gvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellk..... 100
g++ ++++ Gei+ + G+ G G+ l++ + l+ P +G i +i++ + + ++ i k++++ ++ +ni e+ k
MMSYN1_0010 284 GLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYDMGMSHIPEDRHKYGMLLDFSVEENIVS-QEIDKkpfsq 380
778899**************************************9999999999888889999999999999999999999999853.3333311111 PP
TIGR01186 101 ...ideqerkekalealklvdleeye..dryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldea 193
i+++ + a+ +k d+ + + + lsGG qq+ + r + + dll++ ++ ld +++ ++k k+ ++i+++++dl+e
MMSYN1_0010 381 fgfINKKAISRYAQLIIKEFDIRGSRngTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKE-KEKGRAILLVSYDLNEV 477
1125555556667777788888554411567899*****************************************99995.5679************* PP
TIGR01186 194 lrlgdrivilkaGeiv 209
+ l+driv++++G+++
MMSYN1_0010 478 IALADRIVVINDGKLI 493
*************976 PP
>> TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.2 4.3 3.9e-31 3e-29 1 211 [. 11 230 .. 11 254 .. 0.87
2 ! 50.1 0.5 7.5e-16 5.7e-14 13 210 .. 282 493 .. 269 511 .. 0.80
Alignments for each domain:
== domain 1 score: 100.2 bits; conditional E-value: 3.9e-31
TIGR00968 1 ilianvskrf..GdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrd...vtrvkvrdreiGfvfqhyalfkhltvrdni 93
i+++n++k f G ++a dd+ ++vk+G++ al+G G+Gkstl+ ++ Gl +p+sG+i ++G++ +k+++ iG+v qh+ l + tv +ni
MMSYN1_0010 11 IEMQNITKMFlnGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEeviSNPIKANKLGIGMVHQHFKLVEVNTVLENI 108
7899****998889999**********************************************9732123467778889******************* PP
TIGR00968 94 afGleirkkdkakikakv.eellelvqleklg...drypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfv 187
+G+e k + k k+ +el+++++ +l d +++s G +qrv + + l + ++l++dep + l + + l + +++l + t +f+
MMSYN1_0010 109 ILGVEQTKSNIFLNKTKMrSELIDIMNKYDLYvdlDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQK-AGKTIIFI 205
*********999888887358999998777752225666789*********************************999****9999975.56799*** PP
TIGR00968 188 thdqeealevadrivvlekGk.ieq 211
+h +e +va+ v++ Gk i +
MMSYN1_0010 206 SHKMDEIKQVANIATVIRLGKkIVD 230
************9999999862544 PP
== domain 2 score: 50.1 bits; conditional E-value: 7.5e-16
TIGR00968 13 fqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdr.eiGfvf.....qhyalfkhltvrdniafGleirkkdk 104
+ l+ +++v+ G++va+ G G G+ l+++i+Gl kp sG i+ + ++ + +++ r ++G+ +y ++ ++v++ni ei kk+
MMSYN1_0010 282 VYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRyDMGMSHipedrHKYGMLLDFSVEENIV-SQEIDKKPF 378
5568999*********************************************9999998856787653333368************97.568887665 PP
TIGR00968 105 ak....ikakveellelv....ql..eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqe 192
+ k+ +++ +l+ ++ ++ g lsGG++q+ + r + + ++l++ +p ld +++ + + k +++ + + ++v++d +
MMSYN1_0010 379 SQfgfiNKKAISRYAQLIikefDIrgSRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGR-AILLVSYDLN 475
442222455566666655221133113344556788*****************************************9988777655.5689****** PP
TIGR00968 193 ealevadrivvlekGkie 210
e + +adrivv+++Gk++
MMSYN1_0010 476 EVIALADRIVVINDGKLI 493
***************986 PP
>> TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 96.6 1.8 4.5e-30 3.4e-28 2 206 .. 11 223 .. 10 245 .. 0.86
2 ! 52.2 0.3 1.7e-16 1.3e-14 16 213 .. 284 495 .. 270 519 .. 0.77
Alignments for each domain:
== domain 1 score: 96.6 bits; conditional E-value: 4.5e-30
TIGR03864 2 leveglsfay..gkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGld.lrrapkeala.rlGvvfqqstlDldlsveqnl 95
+e++++++ + g+ a dd++++v+kg++ aL+G nGaGkstL+s+l +Ly+ ++g+ikv+G++ + ++p +a + +G+v q+ l +v +n+
MMSYN1_0010 11 IEMQNITKMFlnGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEeVISNPIKANKlGIGMVHQHFKLVEVNTVLENI 108
778888887755788899*********************************************863566776665437999*******9999*****9 PP
TIGR03864 96 ryhaa....LhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWa 189
+ l +++ ++++ +++++ +l ++k+++++ G ++rvei + l + ++L++De+t+ L ++ ++l++ +++l ++g ++++
MMSYN1_0010 109 ILGVEqtksNIFLNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQ-KAGKTIIFI 205
765441100345888999999999**********************************************************999997.8999***** PP
TIGR03864 190 thlvdeveaedrl.vvlh 206
h +de+++ ++ v+
MMSYN1_0010 206 SHKMDEIKQVANIaTVIR 223
*******99877623555 PP
== domain 2 score: 52.2 bits; conditional E-value: 1.7e-16
TIGR03864 16 alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakeg.....eikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryha......aLh 102
l++ +++v++ge+va+ G+ G G+ L++ +t+L++ +g +i+++ ++++++ ++++ + + ld+sve+n+ +
MMSYN1_0010 284 GLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGgivykKINIVNSNIKTRYDMGMSHIPEDRHKYGMLLDFSVEENIVSQEidkkpfSQF 381
58999********************************998722222456666666666666677777677888999********96532111112456 PP
TIGR03864 103 Glsraeaeeriee.alarlglaeraeek..vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWat.hlvdev 196
G+ +++a +r ++ ++++++++ ++ +r L+GG++++ + r + + +lL++ +t GLD+ + +++ +++ + + +g ++L l + +
MMSYN1_0010 382 GFINKKAISRYAQlIIKEFDIRGSRNGTaiARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKE-KGRAILLVSyDLNEVI 478
777777777766526789999876554334799*******************************************99985.5555555550566667 PP
TIGR03864 197 eaedrlvvlhkGkvlaq 213
+ +dr+vv++ Gk+ +
MMSYN1_0010 479 ALADRIVVINDGKLIGE 495
889**********9755 PP
>> TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 113.3 7.1 3.7e-35 2.8e-33 2 260 .. 11 264 .. 10 275 .. 0.85
2 ! 36.1 1.6 1.1e-11 8.5e-10 11 221 .. 275 494 .. 266 500 .. 0.75
Alignments for each domain:
== domain 1 score: 113.3 bits; conditional E-value: 3.7e-35
TIGR02314 2 iklekiskvfdqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtv 99
i++++i+k+f +g i a d++++ v kg+i+ ++g gagkstl+ + l +ptsg++ v+gk+ +sn+ + +++ igm+ qhf l+ tv
MMSYN1_0010 11 IEMQNITKMFLNG--AIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEV-ISNP-IKANKLGIGMVHQHFKLVEVNTV 104
899*******998..599************************************************954.5665.7788999**************** PP
TIGR02314 100 fgnvalplelent....pkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlglt 193
++n+ l +e ++ +k k++ + +++ l d+ ++s g +qrv i + l + +l+ de t+ l p qs+l+++k++++ g t
MMSYN1_0010 105 LENIILGVEQTKSniflNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQK-AGKT 201
********987652222456666666666777777778888899**********************************************975.699* PP
TIGR02314 194 illithemdvvkricdevavidkgeliekgtvseifshpktelakkfirstldlsipedyqerlqet 260
i++i+h+md +k++ + +vi g+ i + vs + + e+a+ ++ l +++ ++y++ l ++
MMSYN1_0010 202 IIFISHKMDEIKQVANIATVIRLGKKIVDLDVSMVSGN---EIAEAMVGRKL-VEVKNKYKKPLSDE 264
*************************9999888887654...45555554443.45555555555555 PP
== domain 2 score: 36.1 bits; conditional E-value: 1.1e-11
TIGR02314 11 fdqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmif.....qhfnllssrtvfgnv 103
+ +++k+ l+ ++ v g+i+ v g g g+ li+ + l kp sg ++ ++ n++ +k+r ++gm ++ +l +v +n+
MMSYN1_0010 275 KKDTNHKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIV---NSN-IKTRYDMGMSHipedrHKYGMLLDFSVEENI 368
456788999*****************************************9987665554...444.4667777775423332457777777888887 PP
TIGR02314 104 alplelentpkek...ikrk.....vtellalvglsdkk..dsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsil.ellkeinrrl 190
e++++p + i++k + ++ + + + lsgg++q+ + r + + +l+ + t ld + + + ++lke +
MMSYN1_0010 369 V-SQEIDKKPFSQfgfINKKaisryAQLIIKEFDIRGSRngTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHsHILKEK--EK 463
4.456666654432223443100003333333444433411467789********************************988887752689985..56 PP
TIGR02314 191 gltillithemdvvkricdevavidkgelie 221
g +ill++++++ v + d++ vi++g+li
MMSYN1_0010 464 GRAILLVSYDLNEVIALADRIVVINDGKLIG 494
889**************************95 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 94.2 1.1 2.6e-29 1.9e-27 18 206 .. 32 226 .. 21 232 .. 0.87
2 ! 51.0 0.2 4.2e-16 3.2e-14 16 207 .. 287 492 .. 272 496 .. 0.82
Alignments for each domain:
== domain 1 score: 94.2 bits; conditional E-value: 2.6e-29
TIGR01277 18 dlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyer...pvsmlfqennlfahltvrqniglGlkpg...lklnavq.kek 108
++v++G++ a++Ge GaGkstl++++ G+ +p+sG+ikvn+k+ + s p + + m+ q l tv +ni lG++ + + ln + + +
MMSYN1_0010 32 TIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPIKAnklGIGMVHQHFKLVEVNTVLENIILGVEQTksnIFLNKTKmRSE 129
5789********************************************9986522269**********************987611144544331445 PP
TIGR01277 109 vedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGk 206
+ d+ ++ + l+ +++s G +qrv + + l r+ il++dep + l p+ + +l ++k+l ++ +t+++++h++++++++a+ v+ Gk
MMSYN1_0010 130 LIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNL-QKAGKTIIFISHKMDEIKQVANIATVIRLGK 226
6678888888888999999***************************************99988776.67789****************9999998886 PP
== domain 2 score: 51.0 bits; conditional E-value: 4.2e-16
TIGR01277 16 efdlsveaGervailGesGaGkstllnliaGflepasGei...kvndkdhtrsapyerpvsmlfqennlfahl...tvrqnig...lGlkpglklnav 104
+f+++v Ge+va+ G G G+ l++ i+G+++p+sG i k+n ++ + y+ +s + +++ + l +v++ni + kp ++ +
MMSYN1_0010 287 TFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIvykKINIVNSNIKTRYDMGMSHIPEDRHKYGMLldfSVEENIVsqeIDKKPFSQFGFI 384
69*************************************93333555555566677778888887776555432228****953336789******** PP
TIGR01277 105 qkekvedvarqvGiadyler.......lpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaai 195
+k+ + a+ + i+++ r + lsGG++q+ + r + +++ +l++ +p ld e++ + + k +ek +++llv+++l++++a
MMSYN1_0010 385 NKKAISRYAQLI-IKEFDIRgsrngtaIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKE-KEKGRAILLVSYDLNEVIAL 480
*****9998754.554433311222336788*********************************9999999999875.7899**************** PP
TIGR01277 196 asqvvvvedGki 207
a+++vv++dGk+
MMSYN1_0010 481 ADRIVVINDGKL 492
**********96 PP
>> TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 92.2 4.4 9.9e-29 7.6e-27 2 209 .. 11 216 .. 10 229 .. 0.84
2 ? 0.7 0.0 0.94 72 123 169 .. 216 266 .. 208 276 .. 0.74
3 ! 53.6 0.4 6.4e-17 4.8e-15 12 219 .. 276 492 .. 266 494 .. 0.80
Alignments for each domain:
== domain 1 score: 92.2 bits; conditional E-value: 9.9e-29
TIGR02211 2 lkcenltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladft 99
++ +n+tk++ +g +++ ++++kg++ a+vG+ G+Gkstl+ +l gl +ptsG+++++Gke + + +G+++q l+ t
MMSYN1_0010 11 IEMQNITKMFLNGAIV--ANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPIKAN---KLGIGMVHQHFKLVEVNT 103
5678999999988654..4589*******************************************985443333443...4579************** PP
TIGR02211 100 alenvamPlliskks....kkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkeknt 193
+len+ + + +k + k++ +++ ++++k +l ++ k ++s G +qrv i + l k ++++ dePt+ l ++ +++++++++l+k+ +t
MMSYN1_0010 104 VLENIILGVEQTKSNiflnKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKT 201
*******998877652211344444456899*************************************************************998776 PP
TIGR02211 194 allvvthdlelakkld 209
++ ++h ++ +k++
MMSYN1_0010 202 -IIFISHKMDEIKQVA 216
.677889888777765 PP
== domain 2 score: 0.7 bits; conditional E-value: 0.94
TIGR02211 123 kellekvglekri.nkkpselsGGerqrvaiaralv...nkPklvladePt 169
+++ + l k+i + s +sG e + + r lv nk k l+deP
MMSYN1_0010 216 ANIATVIRLGKKIvDLDVSMVSGNEIAEAMVGRKLVevkNKYKKPLSDEPI 266
456667788888625678999*************99555566777888886 PP
== domain 3 score: 53.6 bits; conditional E-value: 6.4e-17
TIGR02211 12 kegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPll 109
k+ ++++ l+ +++++ ge+va+ G G G+ l+ ++gl kp sG ++ k ++ + + + r ++ ++ + +l+df++ en++ +
MMSYN1_0010 276 KDTNHKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYDMGMSHIPEDRHKYGMLLDFSVEENIVSQEI 373
5667788889*****************************************997666665555555555555555444555599********986543 PP
TIGR02211 110 .......iskkskkeakerakellekvglekrin..kkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvv 198
+ +kk + a+ +++++++ n + lsGG++q++ + r + ++ +l++ +Pt ld + +++++ +l+ +kek+ a+l+v
MMSYN1_0010 374 dkkpfsqFGFINKKAISRYAQLIIKEFDIRGSRNgtAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILK-EKEKGRAILLV 470
1112112555788899999********99765551155778****************************************99988.56788899999 PP
TIGR02211 199 thdl.elakkldrvlelkdgkl 219
++dl e+++ +dr + ++dgkl
MMSYN1_0010 471 SYDLnEVIALADRIVVINDGKL 492
99953799999*********98 PP
>> TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.1 2.0 3.4e-26 2.6e-24 4 209 .. 10 223 .. 7 231 .. 0.81
2 ! 53.9 0.1 5e-17 3.8e-15 12 213 .. 276 492 .. 265 500 .. 0.83
Alignments for each domain:
== domain 1 score: 84.1 bits; conditional E-value: 3.4e-26
TIGR03265 4 ylsieeiekef..eaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrd..itr.lppqkrdyGivfqsYaLfPnltvaen 96
++++++i+k f +a a +di ++vkkg++ +l+G G Gk+tL+ i+ GL ++++G+i ++g++ i++ + ++k G+v q + L tv en
MMSYN1_0010 10 AIEMQNITKMFlnGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEevISNpIKANKLGIGMVHQHFKLVEVNTVLEN 107
578999999993336667789******************************************9864344323345667899**************** PP
TIGR03265 97 iayGLknkklkreevaerveelLelvglsgseeky......PgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvtt 188
i G+++ k + ++ ++ el+++ ++ + y +s G qqrv + + l + ++L++DeP + L + ++L + +k+lq+ g t
MMSYN1_0010 108 IILGVEQTKSN--IFLNKTKMRSELIDIMNKYDLYvdldakIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQK-AGKTI 202
*****998854..34444444445555555555552221115689*********************************************97.588** PP
TIGR03265 189 imvthdqeealslaDrivvmn 209
i + h +e ++a+ v+
MMSYN1_0010 203 IFISHKMDEIKQVANIATVIR 223
*********999988776665 PP
== domain 2 score: 53.9 bits; conditional E-value: 5e-17
TIGR03265 12 kefe.aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkr.dyGivf.....qsYaLfPnltvaeniayGLk 102
k+ + ++ l+ +++v+ ge+v++ G G G+ L+++i+GL k+ +G i+ ++ +i + + r d G+ Y + ++ v+eni
MMSYN1_0010 276 KDTNhKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRyDMGMSHipedrHKYGMLLDFSVEENIVSQEI 373
4444245679999***************************************99999999888777699*9864444468************976544 PP
TIGR03265 103 nkk.......lkreevaerveelLelvglsgsee..kyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimv 191
+kk ++++ +++ + +++ ++ gs++ lsGG qq+ ++r + +lL++ P LD e++ + + k ++k g + ++v
MMSYN1_0010 374 DKKpfsqfgfINKKAISRYAQLIIKEFDIRGSRNgtAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEK-GRAILLV 470
44322222234566777777788888999988762256789***************************************9999886555.77899** PP
TIGR03265 192 thdqeealslaDrivvmnkgki 213
+d +e ++laDrivv+n+gk+
MMSYN1_0010 471 SYDLNEVIALADRIVVINDGKL 492
*******************986 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 93.4 0.5 3.9e-29 2.9e-27 2 217 .. 8 231 .. 7 259 .. 0.85
2 ! 44.1 0.2 3.8e-14 2.9e-12 10 232 .. 274 511 .. 266 533 .. 0.79
Alignments for each domain:
== domain 1 score: 93.4 bits; conditional E-value: 3.9e-29
TIGR01288 2 dvaidlvgvsksygdkvvv..ndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepv..pararlarakigvvpqfdnldreftvr 95
d ai++ +++k + + +v +d+++ + +g+ l+g ngagkst+ +++gl +p g+i v g+++ + +++ + ig+v q +l + tv
MMSYN1_0010 8 DYAIEMQNITKMFLNGAIVanDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEviSNPIKANKLGIGMVHQHFKLVEVNTVL 105
579*********965444423789999*************************************98654115568899999**********999**** PP
TIGR01288 96 enllvfgr....yfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktil 189
en+++ + l+ ++ + + +++ l d+++ d+s g+++r+ + + l ++l++dept+ l p+ + + + ++ l gkti+
MMSYN1_0010 106 ENIILGVEqtksNIFLNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTII 203
**9763321111233455556666667777788999************************************************************** PP
TIGR01288 190 ltthlmeeaerlcdrlcvleagrkiaeg 217
+ +h m+e +++ + v+ g+ki++
MMSYN1_0010 204 FISHKMDEIKQVANIATVIRLGKKIVDL 231
*************************985 PP
== domain 2 score: 44.1 bits; conditional E-value: 3.8e-14
TIGR01288 10 vsksygdkvv.vndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigv.....vpqfdnldreftvrenllv. 100
v+k kv ++ + + + ge + g +g g+ + + + gl+ p g i + ++ + +r +g+ + ++f+v en++
MMSYN1_0010 274 VKKDTNHKVYgLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYDMGMshipeDRHKYGMLLDFSVEENIVSq 371
667777777536778889999****************************9976655555444444455555541100044444566899999999863 PP
TIGR01288 101 ......fgryfglstreieevips.llefarleskadvrvad.lsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktill 190
f ++ ++ + i + ef s+ + +a+ lsgg +++ + r + +d +lli+ +pt gld a + + +g++ill
MMSYN1_0010 372 eidkkpFSQFGFINKKAISRYAQLiIKEFDIRGSRNGTAIARgLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILL 469
3333335555556666776655441458999999999999865******************************************************* PP
TIGR01288 191 tthlmeeaerlcdrlcvleagrkiaegrpdalideqigcdvi 232
++ ++e l dr++v++ g+ i e + +e+ig +i
MMSYN1_0010 470 VSYDLNEVIALADRIVVINDGKLIGELPAKKAKKEEIGALMI 511
**************************9999999999998776 PP
>> TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 89.9 3.4 4.9e-28 3.8e-26 34 242 .. 22 226 .. 5 241 .. 0.80
2 ! 49.0 0.3 1.3e-15 1e-13 35 245 .. 280 494 .. 272 506 .. 0.80
Alignments for each domain:
== domain 1 score: 89.9 bits; conditional E-value: 4.9e-28
TIGR03415 34 tGlvlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGl 131
G +++ +d++++v++G+i l+G G+Gks+l+ + gl + + G ++v+ +++ + +++++ + mv q+f l+ tv en+ +G+
MMSYN1_0010 22 NGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISN-PIKANK------LGIGMVHQHFKLVEVNTVLENIILGV 112
6999**********************************************988877642.222222......369*********************** PP
TIGR03415 132 elsGvakaerr.krveeqlelvg...laeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdl 225
e + + k+ +e +++++ l d k++++s G+qqrv + + + +adil+ deP + l P + l + +lq k kti+f+sh +
MMSYN1_0010 113 EQTKSNIFLNKtKMRSELIDIMNkydLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQ-KAGKTIIFISHKM 209
*876554333303334444555511155557899************************************75555555555665.4579********* PP
TIGR03415 226 dealklGnriaimegGr 242
de ++ n ++++ G+
MMSYN1_0010 210 DEIKQVANIATVIRLGK 226
***99999988888775 PP
== domain 2 score: 49.0 bits; conditional E-value: 1.3e-15
TIGR03415 35 GlvlgvadasldveeGeilvlmGlsGsGkssllravngln.pvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenv.afG 130
+v g + +++v+ Gei+ + G+ G G+ l++a+ gl pvs G v k++++++ + +t ++ ++++ k+++l +veen+ +
MMSYN1_0010 280 HKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVkPVSGGIVY-----KKINIVNSNIKTRYDMGMSHIPEDRHKYGMLLDFSVEENIvSQE 372
578899********************************96266666553.....789************************************71344 PP
TIGR03415 131 lelsGvakae..rrkrveeqlelv....glaeWa..dkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivf 220
++ + ++ +k +++ +l+ ++ + + + lsGG qq+ + r + + d+l++ +P ld +++ +l+ ++k ++i++
MMSYN1_0010 373 IDKKPFSQFGfiNKKAISRYAQLIikefDIRGSRngTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEK-GRAILL 469
444444432222344444433333111133333311345789*********************************999*******997665.799*** PP
TIGR03415 221 vshdldealklGnriaimegGrivq 245
vs+dl+e + l +ri ++++G+++
MMSYN1_0010 470 VSYDLNEVIALADRIVVINDGKLIG 494
**********************995 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 83.5 0.0 3.8e-26 2.9e-24 334 529 .. 10 208 .. 2 209 .. 0.84
2 ! 46.1 0.0 8.6e-15 6.6e-13 309 529 .. 240 473 .. 221 474 .. 0.80
Alignments for each domain:
== domain 1 score: 83.5 bits; conditional E-value: 3.8e-26
TIGR02868 334 tlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvs.vaslsesevrrvvsvlaqdaHlFd.ttvreN 428
+e+++++ + +++ + +++++++++G +a+vG GaGKstL+++l+gl +p +G++ ++g + v s ++ + + ++ q+ l + tv+eN
MMSYN1_0010 10 AIEMQNITKMFLNGAIvANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEeVISNPIKANKLGIGMVHQHFKLVEvNTVLEN 107
577888888887777768899*******************************************641445455555567********9998469**** PP
TIGR02868 429 lrlarpdatde.ellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvv 524
+ l+ ++ + + l + r +L d +++ l +l ++ + +S G +qR+ + ++L +a++l+ DEPt+ L +++ ++ll+ + ++g+t++
MMSYN1_0010 108 IILGVEQTKSNiFLNKTKMRSELIDIMNK--YDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKnLQKAGKTII 203
****9988554144555566677777666..5577788888899*******************************************966788***** PP
TIGR02868 525 lvthr 529
+++h+
MMSYN1_0010 204 FISHK 208
****7 PP
== domain 2 score: 46.1 bits; conditional E-value: 8.6e-15
TIGR02868 309 evldakvevaeasapaaeaaas.ekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvasls 403
e+++a v ++ ++++++ + + ++p l + +l+v+ +++++ l+ +++++pGe vav G G G L+++++gl++p +G ++ + +++ + +
MMSYN1_0010 240 EIAEAMVGRKLVEVKNKYKKPLsDEPILDVINLTVKKDTNHKvyGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSN 337
4555556666666666555554589**************99944589******************************************999987654 PP
TIGR02868 404 .esevrrvvsvlaqdaH....lFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtkl....geggarlSGGerqRlalARaLladapv 492
++ +s +++d H l d +v eN+ + d + +++ + ++++ + + d + ++ ++ lSGG++q+ ++ R + +d+++
MMSYN1_0010 338 iKTRYDMGMSHIPEDRHkygmLLDFSVEENIVSQEIDKKPFSQFGFINKKAISRYAQLIIKEFDIRGsrngTAIARGLSGGNQQKAIVGREIKKDHDL 435
25556677999******88888899******98888886666666666665555555544444443300003446679******************** PP
TIGR02868 493 llLDEPtehLDaeteeelledLl.aaeegrtvvlvthr 529
l++ Pt +LD+++ e++ + +l + e+gr+++lv+ +
MMSYN1_0010 436 LIVVQPTRGLDVGAIENVHSHILkEKEKGRAILLVSYD 473
********************999788999*****9876 PP
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 79.4 1.2 7.2e-25 5.5e-23 353 550 .. 25 225 .. 3 239 .. 0.80
2 ! 55.5 0.2 1.2e-17 9.4e-16 332 553 .. 259 493 .. 233 501 .. 0.80
Alignments for each domain:
== domain 1 score: 79.4 bits; conditional E-value: 7.2e-25
TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldp.eelrerlalvpqdsalfa.asvleniryGrpdasdeevea 448
a d++ ++v++G+ alvG GaGkstl+++l y+P+sG+i+++G + + +p + + + +v q+ +l + vleni G + ++ ++
MMSYN1_0010 25 IVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPiKANKLGIGMVHQHFKLVEvNTVLENIILGVEQ-TKSNIFL 121
567799*******************************************986666661556678*******998752689*******765.5666655 PP
TIGR02204 449 aakaaeadefisklpeGydtll..GergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk.grttlviahrLatvlkadr 543
++ +e+i + + yd ++ + +s G +qr+ i + + ++a iL++de t+ L + q + q +++l k g+t + i+h++ +++
MMSYN1_0010 122 NKTK-MRSELIDIM-NKYDLYVdlDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKaGKTIIFISHKMDEIKQVAN 217
4433.345666555.568877611566678*******************************************999763799999********99888 PP
TIGR02204 544 iv.vldkG 550
i+ v+ G
MMSYN1_0010 218 IAtVIRLG 225
86355555 PP
== domain 2 score: 55.5 bits; conditional E-value: 1.2e-17
TIGR02204 332 akvrgeiefeevkfayParpdqka..ldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpee.lrerlalvpqds... 423
++++ e ++ ++++ + +++k+ l+ ++++vrpGe va+ G G G+ l++ + +P sG i +++++ + + ++ +p d
MMSYN1_0010 259 KPLSDEPILDVINLTVKKDTNHKVygLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTrYDMGMSHIPEDRhky 356
555556666666666666555554339************************************************99886541555677899886222 PP
TIGR02204 424 .alfaasvleniryGrpdasdee....veaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvq 516
+l+ sv+eni ++d +++ a + a+ i++++ + + + LsGG +q+ + r i kd +L++ + t Ld + ++v+
MMSYN1_0010 357 gMLLDFSVEENIVSQEIDKKPFSqfgfINKKAISRYAQLIIKEFDIRGSRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVH 454
258889******9999886542212237888999999999999986555555566788********************************98877775 PP
TIGR02204 517 .qaleelmkgrttlviahrLatvlk.adrivvldkGriv 553
+ l+e kgr+ l++++ L v+ adrivv+++G+++
MMSYN1_0010 455 sHILKEKEKGRAILLVSYDLNEVIAlADRIVVINDGKLI 493
268999**************987644***********98 PP
>> TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 80.9 2.5 2.3e-25 1.7e-23 326 542 .. 5 223 .. 1 231 [. 0.89
2 ! 53.8 0.2 3.6e-17 2.7e-15 344 548 .. 280 494 .. 254 500 .. 0.84
Alignments for each domain:
== domain 1 score: 80.9 bits; conditional E-value: 2.3e-25
TIGR02203 326 ervrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgv.dladlkLasLRrqvalvsqdvvLFd.d 421
+++ +e++n+t + + + a d+i +kv++G++ alvG G+Gkstl+++l y+p+sG i ++g+ ++ ++ + + +v q+ L + +
MMSYN1_0010 5 QKIDYAIEMQNITKMFLNGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKeEVISNPIKANKLGIGMVHQHFKLVEvN 102
677789**************************************************************9725778889999999**********9878 PP
TIGR02203 422 tiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk. 518
t+ en+ g +++ ++ ++++ + l d+++k + +d + +s G qR+ i + l++ a iL+ De t+ L + + +++l+k
MMSYN1_0010 103 TVLENIILGVEQTKSNIFLNKTKMRSELIDIMNKYDLYVDL--DAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKa 198
***********999999999**************9987775..578899*******************************998877777778888763 PP
TIGR02203 519 gRttlviahRLstiekaDriv.vld 542
g+t + i+h++ i++ +i v+
MMSYN1_0010 199 GKTIIFISHKMDEIKQVANIAtVIR 223
788889********99777641555 PP
== domain 2 score: 53.8 bits; conditional E-value: 3.6e-17
TIGR02203 344 ddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLas.LRrqvalvsqd....vvLFddtiaenvaYgeleevd 436
+++ l+ +++kv++Ge+va+ G G G+ l++ ++ ++p sG i+ +++ + ++++ ++ + d +L d ++ en+ e ++ +
MMSYN1_0010 280 HKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTrYDMGMSHIPEDrhkyGMLLDFSVEENIVSQEIDKKP 377
4566799***********************************************99998761344567776662222589**********99997776 PP
TIGR02203 437 eae...veealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvq.aaLerlmkgRttlviahRLs 530
+ +++ + y++ ++ + + + + LsGG q+ + R + kd +Li+ t LD + +v + L++ kgR l++++ L
MMSYN1_0010 378 FSQfgfINKKAISRYAQLIIKEFDIRGSRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHsHILKEKEKGRAILLVSYDLN 475
6653347777888899999999997766676667788********************************99877776267999**************7 PP
TIGR02203 531 .tiekaDrivvlddGkive 548
i aDrivv++dGk++
MMSYN1_0010 476 eVIALADRIVVINDGKLIG 494
35789***********995 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 81.8 0.8 1.7e-25 1.3e-23 15 209 .. 30 226 .. 25 252 .. 0.88
2 ! 14.2 0.0 6e-05 0.0045 21 60 .. 294 332 .. 274 345 .. 0.81
3 ! 37.4 0.1 5.2e-12 3.9e-10 130 223 .. 413 505 .. 409 536 .. 0.81
Alignments for each domain:
== domain 1 score: 81.8 bits; conditional E-value: 1.7e-25
TIGR02142 15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkrarae...err 109
d+ ++++ ++ al G+ G+Gk++l+ ++ GL +p++g i+++g+ s+ + ++k +g+v q+ +L +v en+ G+++++++ ++
MMSYN1_0010 30 DITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNP---IKANKLGIGMVHQHFKLVEVNTVLENIILGVEQTKSNiflNKT 124
5667777779**********************************98777776...7799999*************************99987333233 PP
TIGR02142 110 iseekvielLgiehL...leRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvv 204
++i++++ L l+ + +++s G +qRv i + l + ++L++DeP a L ++ + +l +++l++ k i+++sH++de++++a+ v
MMSYN1_0010 125 KMRSELIDIMNKYDLyvdLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGK-TIIFISHKMDEIKQVANIATV 221
3456678888766664447889999**********************************************88765.79****************999 PP
TIGR02142 205 ledGr 209
++ G+
MMSYN1_0010 222 IRLGK 226
99997 PP
== domain 2 score: 14.2 bits; conditional E-value: 6e-05
TIGR02142 21 pgkgvtalFGrsGsGktslirliaGLtrpdegeivldgev 60
pg +++a+ G+ G G+ li++i+GL++p +g iv +
MMSYN1_0010 294 PG-EIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKIN 332
55.9****************************99876655 PP
== domain 3 score: 37.4 bits; conditional E-value: 5.2e-12
TIGR02142 130 gkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223
+ LsGG++q+ +gR + + +LL++ P LD +++ ++ + +e il+vs++l+ev ladr+vv++dG++ ++ ++++ +++
MMSYN1_0010 413 RGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKE-KEKGRAILLVSYDLNEVIALADRIVVINDGKLIGELPAKKAKKEE 505
67***************************************9998774.566778**************************9988777665554 PP
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 83.7 4.6 4.1e-26 3.1e-24 2 209 .. 11 217 .. 10 228 .. 0.86
2 ! 50.3 0.9 7e-16 5.3e-14 21 219 .. 285 492 .. 268 493 .. 0.73
Alignments for each domain:
== domain 1 score: 83.7 bits; conditional E-value: 4.1e-26
TIGR02982 2 ikirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnlleslta 99
i+++++ ++ +g++ + di +++++g+i l G+ G+Gk tl++++ gl + +G++kv gke ++ + +++ + iG++ q++ l+e+ t+
MMSYN1_0010 11 IEMQNITKMFLNGAIVAN--DDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKE--EVISNPIKANKLGIGMVHQHFKLVEVNTV 104
667777777777766543..799******************************************98..4555666677789**************** PP
TIGR02982 100 eqnvrmalelkek...lsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgtt 194
+n+ +++e +++ l++++++++ +++++ l ld k +d+s G +qrv i + l + ++++ dePta l + +++++++++l + g t
MMSYN1_0010 105 LENIILGVEQTKSnifLNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQK-AGKT 201
*******997765455677788888899*************************************************************9976.6888 PP
TIGR02982 195 illvthd.nrildvad 209
i+++ h + i +va+
MMSYN1_0010 202 IIFISHKmDEIKQVAN 217
8888886245666665 PP
== domain 2 score: 50.3 bits; conditional E-value: 7e-16
TIGR02982 21 lfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyif...qahnllesltaeqnvrmalelkek..l 113
l n++++pgeiv ++G G G+ l+ i+gl + +G + + ++ + + k++ ++ + +i ++ +l + +e+n+ +++e+ +k
MMSYN1_0010 285 LETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYDM--GMSHIPedrHKYGMLLDFSVEENI-VSQEIDKKpfS 379
7889**********************************9987544444443333333332..222332211344555556677776.45566555212 PP
TIGR02982 114 sakeakakaeelleavglee.......rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthd.nr 203
+ ++ka + ++ ++e + ++ lsgG +q+ + r + + +l++ +Pt ld + ++v + + k +e+g +illv +d n
MMSYN1_0010 380 QFGFINKKAISRYAQLIIKEfdirgsrNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILK-EKEKGRAILLVSYDlNE 476
2333455555555566666666666655667899***********************************99999876655.489***********789 PP
TIGR02982 204 ildvadrivkmedGkl 219
++ +adriv ++dGkl
MMSYN1_0010 477 VIALADRIVVINDGKL 492
**************98 PP
>> TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 85.1 2.7 1.6e-26 1.2e-24 2 183 .. 29 217 .. 28 234 .. 0.84
2 ! 45.3 1.5 2.3e-14 1.8e-12 2 191 .. 286 490 .. 285 496 .. 0.75
Alignments for each domain:
== domain 1 score: 85.1 bits; conditional E-value: 1.6e-26
TIGR01184 2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegke..itepgp.drm...vvfqnysllpwltvrenialavdavlrdl..skser 91
+d+ +++kkg++ +l+g g gkstl+ ++ gl +ptsg+++++gke i++p +++ +v q + l+ tv eni l v++ ++++ +k++
MMSYN1_0010 29 DDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEevISNPIKaNKLgigMVHQHFKLVEVNTVLENIILGVEQTKSNIflNKTKM 126
6899*****************************************9855666654134344479*********************9998752256666 PP
TIGR01184 92 reiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqe..kllkiveearvtvlmvthdvdealllsd 183
r+ + + ++ +l d +++++s g++qrv i + l + ++l++dep l t +++q +++k +++a t+++++h +de +++
MMSYN1_0010 127 RSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVL---TPQQIQSllQIMKNLQKAGKTIIFISHKMDEIKQVAN 217
65555677778899999*********************************9876...555555422678889999*************876665 PP
== domain 2 score: 45.3 bits; conditional E-value: 2.3e-14
TIGR01184 2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgp.dr....mvvf....qnysllpwltvrenial.avdav.lrdlsk 88
+ +++++ ge++++ g g g+ l++ i+gl kp sg+++ + +i + r m + y +l +v eni+ +d+ ++
MMSYN1_0010 286 ETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIkTRydmgMSHIpedrHKYGMLLDFSVEENIVSqEIDKKpFSQFGF 383
67899***********************************999887766544312322113322333368**9999******9751455531233333 PP
TIGR01184 89 serr......eiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeall 180
+++ +++ +++++ g r+ + lsgg +q+ + r + +ll++ +p ld + e++ ++lk +e+ ++l+v++d++e +
MMSYN1_0010 384 INKKaisryaQLIIKEFDIRGSRNGT-AIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKE-KEKGRAILLVSYDLNEVIA 479
33330000014455556666655544.45678********************************************96.56777899*********** PP
TIGR01184 181 lsdrvvmltng 191
l+dr+v++ +g
MMSYN1_0010 480 LADRIVVINDG 490
*******9988 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.1 7.0 1.2e-25 9.2e-24 2 220 .. 11 226 .. 10 239 .. 0.83
2 ! 48.8 0.5 1.7e-15 1.3e-13 15 227 .. 283 498 .. 267 506 .. 0.77
Alignments for each domain:
== domain 1 score: 82.1 bits; conditional E-value: 1.2e-25
TIGR00972 2 levknlklfygeke..alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegk.diydkkldvvelrkkvGmvfqkpnpfp. 95
+e++n++ ++ + a +d+++++kk ++ al+G G+Gkstl+ l l + + +G++ ++gk +++++ + + +l +Gmv q+++
MMSYN1_0010 11 IEMQNITKMFLNGAivANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPT-----SGTIKVNGKeEVISNPIKANKL--GIGMVHQHFKLVEv 101
67778777775555115578999************************99998876.....7888887752577776666655..7**********996 PP
TIGR00972 96 msiydnvayglrlkg...ikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeL 190
++++n+ +g++ ++ +k+++++ + ++k l+ +l+++ + +s G qqr+ i + l + ++l++DePt+ L p++ +++ +++++L
MMSYN1_0010 102 NTVLENIILGVEQTKsniFLNKTKMRSELIDIMNKYDLY----VDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNL 195
89********87665222457777777777777777777....678888888999******************************************* PP
TIGR00972 191 kkk.ytivivthnmqqaarvsdktaffleGe 220
+k ti+ + h+m+ ++v++ ++++ G+
MMSYN1_0010 196 QKAgKTIIFISHKMDEIKQVANIATVIRLGK 226
99879*****************999988886 PP
== domain 2 score: 48.8 bits; conditional E-value: 1.7e-15
TIGR00972 15 ealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvf.....qkp.npfpmsiydnvayg. 105
l+ n++++ +++a+ G G G+ l++++ l + v +G +++++ +i+++ ++ r +Gm k+ +s+ +n++
MMSYN1_0010 283 YGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPV-----SGGIVYKKINIVNS---NIKTRYDMGMSHipedrHKYgMLLDFSVEENIVSQe 372
468899***************************9998887.....78888888888887...456688888865222111121234578889987653 PP
TIGR00972 106 .....lrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeli.qeLkkkytiv 197
g +kk++++ ++ +k+ + + + a +LsGG qq+ ++ r + + ++l++ Pt LD a e++ + i +e +k i+
MMSYN1_0010 373 idkkpFSQFGFINKKAISRYAQLIIKEFDIRG--SRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHIlKEKEKGRAIL 468
21111234466777777777777777777763..3455677899***************************************976615555569*** PP
TIGR00972 198 ivthnmqqaarvsdktaffleGelveeget 227
+v +++ + ++d+++++ +G+l+ e ++
MMSYN1_0010 469 LVSYDLNEVIALADRIVVINDGKLIGELPA 498
************************976555 PP
>> TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 86.1 6.8 6.1e-27 4.6e-25 279 508 .. 10 230 .. 2 251 .. 0.83
2 ! 10.0 0.4 0.00068 0.052 14 62 .. 283 329 .. 266 342 .. 0.67
3 ! 37.1 0.5 4.1e-12 3.1e-10 134 253 .. 377 498 .. 357 536 .. 0.75
Alignments for each domain:
== domain 1 score: 86.1 bits; conditional E-value: 6.1e-27
TIGR03269 279 iikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyal 376
i ++++ k ++ G + a d+++++vk+++i+ lvG GaGk+tl il G+ +ptsG ++v +e + k k iG++hq+++l
MMSYN1_0010 10 AIEMQNITKMFL---NGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPIKA------NKLGIGMVHQHFKL 98
578899999887...599***********************************************9777776543333......3556********** PP
TIGR03269 377 yphrtvlenlteaiglelpdelakrkavivlkavGfdeekakei.ldklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilka 473
+tvlen+ + + + k+ + + +++ + ld +++s+G + rv + +vl ++ i+++dept + p +++ i+k
MMSYN1_0010 99 VEVNTVLENIILGVEQTKSN-IFLNKTKMRSELIDIMNKYDLYVdLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSL-LQIMKN 194
**********8666544443.4444444455555555555554448888899*********************************766555.579999 PP
TIGR03269 474 reeleetfvivshdmdfvlevcdraalmrdGk.ivk 508
++ ++t + +sh md +++v + a+++r Gk iv+
MMSYN1_0010 195 LQKAGKTIIFISHKMDEIKQVANIATVIRLGKkIVD 230
******************************972555 PP
== domain 2 score: 10.0 bits; conditional E-value: 0.00068
TIGR03269 14 evlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkiiyh 62
l++ ++++ Ge++ + G G G+ l++ + Gl + p sG i+y+
MMSYN1_0010 283 YGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVK--PVSGGIVYK 329
34677777777777777777777777777777777765..777777775 PP
== domain 3 score: 37.1 bits; conditional E-value: 4.1e-12
TIGR03269 134 aleeigyeakeavkravell.eevkl..ehrithiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshw 228
+++ g+ k+a++r ++l+ +e ++ + t iar lsGG++q+ ++ r++ k+ ll+ +pt ld + + vh+ + + + l+++
MMSYN1_0010 377 PFSQFGFINKKAISRYAQLIiKEFDIrgSRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILLVSYDL 474
567899999*****9999863555552267789**********************************************9998866666666777778 PP
TIGR03269 229 peviedlsdkaillekGeiveeGep 253
evi+ l+d+ +++++G+++ e +
MMSYN1_0010 475 NEVIA-LADRIVVINDGKLIGELPA 498
88885.9**********99865433 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 77.2 0.0 3.5e-24 2.7e-22 13 228 .. 24 240 .. 12 267 .. 0.87
2 ! 44.9 0.4 2.6e-14 1.9e-12 17 217 .. 285 494 .. 266 510 .. 0.77
Alignments for each domain:
== domain 1 score: 77.2 bits; conditional E-value: 3.5e-24
TIGR03873 13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagad.lkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaa 109
+ + dd+++++ +G + +l+G nG+Gkstl+++l Gl +p+ G+++++g++ + + + +a + + +v q+ + +v + ++lG +s +
MMSYN1_0010 24 AIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEeVISNPIKANKLGIGMVHQHFKLVEVNTVLENIILGVEQTKSNIFL 121
4455699*****************************************997659999999999999********99999**********999998777 PP
TIGR03873 110 dsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhv 207
+ ++ + ++ + +l d +++ +s G +qrv++ + l ++ +l++dePt l + +ll+++++l + g t++ h ++ +v++
MMSYN1_0010 122 NKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIFISHKMDEIKQVANIA 219
6655555555577888888888999**********************************998888999*********************999999999 PP
TIGR03873 208 vvldgGrvvaaGppaevltpe 228
v+ G+ + +++ v e
MMSYN1_0010 220 TVIRLGKKIVDLDVSMVSGNE 240
998888776666666665555 PP
== domain 2 score: 44.9 bits; conditional E-value: 2.6e-14
TIGR03873 17 vddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrar.arrvalveqdsdae...vplsvrdvvalGri...Phrslf 107
++ ++++ +G++ ++ G +G G+ l++ ++Gl++p G + ++ ++ + ++r + ++ + d ++ +++sv + ++ i P+ s+f
MMSYN1_0010 285 LETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRyDMGMSHIPEDRHKYgmlLDFSVEENIVSQEIdkkPF-SQF 381
455678999**********************************999998887777772466887766655431225779999887655511166.455 PP
TIGR03873 108 aa.dsdedaevvdralarvels..sladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaas 202
+ + ++ + ++ ++ + ++ + lsGG++q+ + r + ++ ll++ +Pt ldv a ++ + + + ++g ++++ +dln ++
MMSYN1_0010 382 GFiNKKAISRYAQLIIKEFDIRgsRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILLVSYDLNEVIA 479
541444445555566666655411334445678***********************************99999988777799**************** PP
TIGR03873 203 vcdhvvvldgGrvva 217
++d++vv++ G+++
MMSYN1_0010 480 LADRIVVINDGKLIG 494
***********9986 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.2 1.3 3.6e-28 2.7e-26 9 188 .. 29 210 .. 21 212 .. 0.88
2 ! 34.8 0.4 3.3e-11 2.5e-09 7 188 .. 284 475 .. 278 477 .. 0.81
Alignments for each domain:
== domain 1 score: 90.2 bits; conditional E-value: 3.6e-28
TIGR01166 9 kglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdp...ddqlfaadvdedvafgplnlGlseae 103
+++ ++v++g+ al+G+nGaGkstl++ l Gl +P+sG++ ++G+e s + + + + +++v q + + ++ v + n+ l++ +
MMSYN1_0010 29 DDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVIS-NPIKANKLGIGMVHQHFklvEVNTVLENIILGVEQTKSNIFLNKTK 125
7899*****************************************986665.46777777888887775111333444455556666789******** PP
TIGR01166 104 verrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
+++ + + +++ d+ + ++ +s G ++rv i ++ ++d+l++dePta l p+ + ll+i+++l+++Gkt+++ +h +d
MMSYN1_0010 126 MRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIFISHKMD 210
**************99899999************************************************************987 PP
== domain 2 score: 34.8 bits; conditional E-value: 3.3e-11
TIGR01166 7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeel.......dys..rkgllelrkkvalvlq.dpddqlfaadvdedvafgp 94
l++ n++v+ ge +a+ G G G+ l++ ++Gl++P sG ++++ ++ y+ + + e r+k +++l ++ +++ ++d+ f+
MMSYN1_0010 284 GLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIvnsniktRYDmgMSHIPEDRHKYGMLLDfSVEENIVSQEIDKK-PFSQ 380
5899*************************************8876654331111111344215778899*****9997467899999999876.5555 PP
TIGR01166 95 lnlGlseaeverrvrealaavdisgleer..pthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
+ ++++ ++r + ++ di g ++ ++ lsgG++++ + + d+l++ +Pt gld e++ + + k +e+G+ +++ ++d++
MMSYN1_0010 381 FGF-INKKAISRYAQLIIKEFDIRGSRNGtaIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILLVSYDLN 475
433.2355677777888999***999875115688*******9999999999***************************************99975 PP
>> TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 71.1 1.1 2.7e-22 2.1e-20 20 219 .. 24 228 .. 11 247 .. 0.83
2 ! 53.1 0.3 7.9e-17 6e-15 23 220 .. 284 494 .. 268 502 .. 0.77
Alignments for each domain:
== domain 1 score: 71.1 bits; conditional E-value: 2.7e-22
TIGR03258 20 arvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppy...krnlallvqnyalfphlkveenvafGlrarkqs... 111
a v dd++++++ G++ al+G+ G+Gk+tl+ ++ G+ ++ G++ v +++ p k +++++ q + l +v en+ +G+ k +
MMSYN1_0010 24 AIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPIkanKLGIGMVHQHFKLVEVNTVLENIILGVEQTKSNifl 121
5566799*****************************************9987666666511156799**********************988765111 PP
TIGR03258 112 .kaliaervadalklvqls.daaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvla 207
k+++ + d + +l d a+ + +s G qqrv + + l + d+l++dep + l q +s+ + +k+l + t+++++h de +a
MMSYN1_0010 122 nKTKMRSELIDIMNKYDLYvDLDAK-IQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKA--GKTIIFISHKMDEIKQVA 216
1444444555555555553133333.4679********************************************9885..68**************** PP
TIGR03258 208 dkillmkeGsli 219
+ + +++ G+ i
MMSYN1_0010 217 NIATVIRLGKKI 228
*****9999755 PP
== domain 2 score: 53.1 bits; conditional E-value: 7.9e-17
TIGR03258 23 vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykr.nlallv.....qnyalfphlkveenvafGlrark.qsk. 112
l+ + +++ +Ge++a+ G G G+ l++a++G+vk+ G ++ ++ r ++++ y ++ + veen+ +k s+
MMSYN1_0010 284 GLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRyDMGMSHipedrHKYGMLLDFSVEENIVSQEIDKKpFSQf 381
4788999*******************************999999888888776544332455532223325799999999999987654444423322 PP
TIGR03258 113 aliae.....rvadalklvql..sdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdea 203
i++ +k ++ s ++ + lsGG qq+ + r + + d+l++ +p ld ++v + + l+++ ++l v++d +e
MMSYN1_0010 382 GFINKkaisrYAQLIIKEFDIrgSRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHI--LKEKEKGRAILLVSYDLNEV 477
34554111103333456655533667899999******************************************98..566667889*********** PP
TIGR03258 204 lvladkillmkeGslia 220
++lad+i ++++G+li
MMSYN1_0010 478 IALADRIVVINDGKLIG 494
**************985 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.1 0.3 4.5e-20 3.4e-18 1 191 [. 33 229 .. 33 236 .. 0.79
2 ! 53.4 0.1 8.4e-17 6.4e-15 1 191 [. 290 492 .. 290 507 .. 0.77
Alignments for each domain:
== domain 1 score: 64.1 bits; conditional E-value: 4.5e-20
TIGR03771 1 lsvdkGellgllGpnGaGkttllrailglikvakGsvkvagkss......rkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfa 92
++v+kG++ +l+G nGaGk+tl+ ++gl +++ G++kv+gk + + iG v q ++ + +e+++l + ++ +k +
MMSYN1_0010 33 IKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEvisnpiKANKLGIGMVHQHFKLV-EVNTVLENIILGVEQTKSNIFL-NKTKMRS 128
5799************************************986422212245667899999987765.4444455555554444444444.4444445 PP
TIGR03771 93 avadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatc..drvvllng 188
d +++ +l d + ++s G +qrv + + l k +l++dep + l +++l++++++l ++g++i+ +h++ e +++ v+ l +
MMSYN1_0010 129 ELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIFISHKMDEIKQVAniATVIRLGK 226
66788999999999999*******************************9999888999*********************9977655541055666666 PP
TIGR03771 189 rvv 191
++v
MMSYN1_0010 227 KIV 229
665 PP
== domain 2 score: 53.4 bits; conditional E-value: 8.4e-17
TIGR03771 1 lsvdkGellgllGpnGaGkttllrailglikvakGsv...kvag.kssrkgrreiG..yvp.qrhefawdfpidveqtvlsGra.....gliGllrrp 86
++v +Ge++++ G +G G+ l++ai gl+k+ G + k++ +s+ k r ++G ++p rh++ +ve+ ++s + G++ +
MMSYN1_0010 290 IKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIvykKINIvNSNIKTRYDMGmsHIPeDRHKYGMLLDFSVEENIVSQEIdkkpfSQFGFINKK 387
57899**************************99998733323321345677777763368846****9988889988888876511111456666666 PP
TIGR03771 87 kkadfaavadalervklteladrp.v.GelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdr 182
+ +a + +++ ++ ++ + + lsGG++q+ +v r + + ll++ +p Gld+ ++e++ + + ++g+ail++++dl e +a +dr
MMSYN1_0010 388 AISRYA--QLIIKEFDIRGSRNGTaIaRGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILLVSYDLNEVIALADR 483
665555..445677777766665423156***************************************999888999********************* PP
TIGR03771 183 vvllngrvv 191
+v++n +
MMSYN1_0010 484 IVVINDGKL 492
***995433 PP
>> TIGR01257 rim_protein: rim ABC transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 83.4 1.7 1.5e-26 1.1e-24 931 1137 .. 13 226 .. 6 236 .. 0.88
2 ! 34.7 0.2 7e-12 5.3e-10 947 1139 .. 286 493 .. 269 523 .. 0.80
Alignments for each domain:
== domain 1 score: 83.4 bits; conditional E-value: 1.5e-26
TIGR01257 931 vknlvkifepsgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkd..ietnldavrqslgmcpqhnilfhhltvaehi 1024
++n+ k+f a d + i + + +i a++g ngagk+t +sil gl ptsgt+ v gk+ i + a + +gm+ qh l+ tv e i
MMSYN1_0010 13 MQNITKMFLNGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEevISNPIKANKLGIGMVHQHFKLVEVNTVLENI 108
6899*****999*************************************************97556777999999*******************98 PP
TIGR01257 1025 lf.yaqlkgrsw...eeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllky.rsgrtiim 1115
++ q k + + + + e+ +++ l+ + + qd+s glq+++ + + a ++v+dept+ + p +s+ +++ + ++g+tii+
MMSYN1_0010 109 ILgVEQTKSNIFlnkTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLqKAGKTIIF 204
762568888754211344556677889999****************************************************99875279****** PP
TIGR01257 1116 sthhmdeadllgdriaiisqgr 1137
+h+mde + + ++i g+
MMSYN1_0010 205 ISHKMDEIKQVANIATVIRLGK 226
*******999988888887765 PP
== domain 2 score: 34.7 bits; conditional E-value: 7e-12
TIGR01257 947 drlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmc..p..qhni.lfhhltvaehilfyaqlkgr.sw. 1035
+ +ni + +i a+ g +g g+ + +tgl+ p sg ++ +i + r +gm p +h+ ++ ++v e i+ k s+
MMSYN1_0010 286 ETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYDMGMShiPedRHKYgMLLDFSVEENIVSQEIDKKPfSQf 381
6789999999******************************99998888888888899999963342234332455678889888654333220221 PP
TIGR01257 1036 .....eeaqlemeamledtglhhkrnee..aqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyr.sgrtiimsthhmdea 1123
+ + ++++ + rn a+ lsgg q+k v + d ++++ +pt g+d + + +lk + gr+i++ ++ ++e
MMSYN1_0010 382 gfinkKAISRYAQLIIKEFDIRGSRNGTaiARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKeKGRAILLVSYDLNEV 477
111102233334456778888888997633799****************************************999997637************** PP
TIGR01257 1124 dllgdriaiisqgrly 1139
l dri +i++g+l
MMSYN1_0010 478 IALADRIVVINDGKLI 493
*************996 PP
>> TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.4 2.1 1.1e-27 8e-26 471 682 .. 4 219 .. 1 231 [. 0.80
2 ! 32.8 3.8 6.7e-11 5.1e-09 494 690 .. 284 493 .. 216 505 .. 0.72
Alignments for each domain:
== domain 1 score: 88.4 bits; conditional E-value: 1.1e-27
TIGR03796 471 kekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlan..slalvdqdivlfe 566
++k++ ++e++n+t + + + +d+++++k+G AlvG G+Gkst+ ++ Gly+p+sG+i ++gk+ i++ + an + +v+q+ l e
MMSYN1_0010 4 EQKIDYAIEMQNITKMFLNGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEE-VISNPIKANklGIGMVHQHFKLVE 100
47888999******9999888888899******************************************9864.45555554411689********99 PP
TIGR03796 567 .gtvrdnltlwdetipeedlvrAakDAaihdvilarpggyea..elaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEk...aidenl 658
tv +n+ l e +++ + ++ ++ +++ ++y+ +l +++s G +qR+ei + L ++ iL++DE t+ L ++ + +i++nl
MMSYN1_0010 101 vNTVLENIILGVEQTKSNIF---LNKTKMRSELIDIMNKYDLyvDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQsllQIMKNL 195
459******95444433333...34445566666666666651145566689*******************************998654222799*** PP
TIGR03796 659 rrRgctciivaHRLstiRdcdeii 682
++ g t+i ++H++ i+++ +i
MMSYN1_0010 196 QKAGKTIIFISHKMDEIKQVANIA 219
******************999884 PP
== domain 2 score: 32.8 bits; conditional E-value: 6.7e-11
TIGR03796 494 liedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpr.eeiprevlanslalvdqdi....vlfegtvrdnltlwdetipeedlv 586
+e f+++++pG+ vA+ G G G+ + + ++Gl +p+sG i++ ++ ++ ++ ++ + d +l++ +v +n+ ++ i ++ +
MMSYN1_0010 284 GLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIvNSNIKTRYDMGMSHIPEDRhkygMLLDFSVEENIV--SQEIDKKPFS 379
3799*****************************************9987524445677788899987775223368889*****96..5556665555 PP
TIGR03796 587 r..AakDAaihdvilarpggyeaelaegg....anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl...rrRgctciivaHRLs.t 674
+ ++ ai+ + ++++ + + +g + lsGG++q+ + R + k+ +Li+ t LD + +++++++ +++g ++++v++ L
MMSYN1_0010 380 QfgFINKKAISRYAQLIIKEFDIRGSRNGtaiaRGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHIlkeKEKGRAILLVSYDLNeV 477
422466777888878888888887777762222569*******************************98888887776444578***********835 PP
TIGR03796 675 iRdcdeiivlerGkvv 690
i +d+i+v++ Gk++
MMSYN1_0010 478 IALADRIVVINDGKLI 493
7789**********87 PP
>> TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 70.2 4.3 5.8e-22 4.4e-20 28 235 .. 29 233 .. 11 253 .. 0.85
2 ! 49.8 0.7 1e-15 7.6e-14 26 235 .. 284 498 .. 270 524 .. 0.82
Alignments for each domain:
== domain 1 score: 70.2 bits; conditional E-value: 5.8e-22
TIGR02769 28 dnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreii..gePlrhltslde 123
d++ +++++G al+G+ GaGkstl +l Gl +P++G+++ +G++ + ++ ka + + +v q v ++ +++ii e + l++
MMSYN1_0010 29 DDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEE--VISNPIKANKLGIGMVHQHF-KLVEVNTVLENIIlgVEQTKSNIFLNK 123
799******************************************975..55667899999*******85.5677777788877444888888999** PP
TIGR02769 124 serkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrv 221
++ + +++++ +l + ld + +++s G qr+ i + l + ++v+de + l s+l+++k+l+ ++G +++fi+h + ++++a+
MMSYN1_0010 124 TKMRSELIDIMNKYDLYVD-LDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQ-KAGKTIIFISHKMDEIKQVANIA 219
****99**********987.566679********************************9988888999999996.67999****************** PP
TIGR02769 222 lvldeGqiveeikv 235
v+ G+ + + +v
MMSYN1_0010 220 TVIRLGKKIVDLDV 233
**999986655544 PP
== domain 2 score: 49.8 bits; conditional E-value: 1e-15
TIGR02769 26 vldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsis.......avnprksvreiigePlr 116
l+ +++++ Ge va+ G G G+ l + + Gl kP +G + ++ ++ + + k ++ + + d +v + +ei + P+
MMSYN1_0010 284 GLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIK--TRYDMGMSHIPEDRHKygmlldfSVEENIVSQEIDKKPFS 379
488999***************************************98887665554..4455556666666432112222256666666777789*** PP
TIGR02769 117 hltsldeserkariaellelvelrsevl.dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrl 213
++ +++ + + ++ ++++ ++r + r lsGG q++ + r + + l+++ + ld+ ++ + + k +e G a+l++++dl+
MMSYN1_0010 380 QFGFINKKAISRYAQLIIKEFDIRGSRNgTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKE-KEKGRAILLVSYDLNE 476
************************87652678999*********************************9888887766654.578************* PP
TIGR02769 214 vqkfaqrvlvldeGqiveeikv 235
v +a+r++v+++G+++ e +
MMSYN1_0010 477 VIALADRIVVINDGKLIGELPA 498
*****************99743 PP
>> TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 80.3 3.8 3.8e-25 2.9e-23 1 223 [. 11 225 .. 11 231 .. 0.87
2 ! 36.1 0.2 1.2e-11 9.1e-10 13 227 .. 282 494 .. 270 506 .. 0.82
Alignments for each domain:
== domain 1 score: 80.3 bits; conditional E-value: 3.8e-25
TIGR03005 1 vrisdvtkrf..geltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsf 96
++++++tk f g + d++ ++v++G+ al+G G+Gkst++ il+ l + G+ikv+g++ + +++ + iGmv q+f
MMSYN1_0010 11 IEMQNITKMFlnGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISN------------PIKANKLGIGMVHQHF 96
68899999884456777899*****************************************886655444............34445568******** PP
TIGR03005 97 nlfphktvldnvteapvlvkG...varaeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrr 191
l +tvl+n+++ ++k +++++ ++ +++++ l da +s G +qrv i + l + +l+fde+t+ l p+ ++ +l+++++
MMSYN1_0010 97 KLVEVNTVLENIILGVEQTKSnifLNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKN 194
*************99999886433677788888899999999999999999*********************************************** PP
TIGR03005 192 lasetdltmllvthemgfarefadrvlffdkG 223
l + t+++++h+m +++a+ G
MMSYN1_0010 195 LQKAG-KTIIFISHKMDEIKQVANIATVIRLG 225
*8765.5999*******999999876666555 PP
== domain 2 score: 36.1 bits; conditional E-value: 1.2e-11
TIGR03005 13 ltvldglelevaaGekvaliGpsGsGkstilrilmtl.etideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvt 109
+ l+ ++++v +Ge va++G G G+ +++ + l +++++G + + +++ k ++ + h+ + r+k Gm++ f + + v +++
MMSYN1_0010 282 VYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLvKPVSGGIVYKKINIVNSN--IKTRY-DMGMSHIPEDRHKYGMLLD-FSV-EENIVSQEID 374
556999**********************9999888872556666665544444333..45555.77899***********986.654.678899**** PP
TIGR03005 110 eapvlvkGvaraeaekravell....dmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllv 203
+ p G + +a +r +l+ d+ G + a+ lsGG++q+ + r + +l+ ++t ld +e+v + + + +e+ ++llv
MMSYN1_0010 375 KKPFSQFGFINKKAISRYAQLIikefDIRG-SRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILK-EKEKGRAILLV 470
*************99998888543224444.3445678889***************************************999887.5788999**** PP
TIGR03005 204 themgfarefadrvlffdkGkive 227
+++++ +adr++ + Gk++
MMSYN1_0010 471 SYDLNEVIALADRIVVINDGKLIG 494
********************9875 PP
>> TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.3 3.8 1.4e-24 1e-22 317 524 .. 11 219 .. 5 228 .. 0.84
2 ! 40.9 1.3 2.9e-13 2.2e-11 317 531 .. 267 492 .. 251 501 .. 0.83
Alignments for each domain:
== domain 1 score: 78.3 bits; conditional E-value: 1.4e-24
TIGR01842 317 levenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgad..l.kqwdretlGksiGYlPqdveLfe.Gtvae 410
+e++n++ + +++ +i++++k+G++ a++G g+Gks+L+ +l G ++p+sG+++++g + + + ++lG iG + q +L+e tv e
MMSYN1_0010 11 IEMQNITKMFLNGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEevIsNPIKANKLG--IGMVHQHFKLVEvNTVLE 106
66777777777777777889*******************************************984322446677777..9**********8569*** PP
TIGR01842 411 niaRfeenadaekvieaaklagvhelilrlpkGYdteig..egGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkit 506
ni e+++++ ++ k+ eli + + Yd ++ ++ + +s G +qR+ + + ly++ ++v DeP a L + q l++ +k+l++++ t
MMSYN1_0010 107 NIILGVEQTKSNIFLNKTKM--RSELID-IMNKYDLYVDldAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKT 201
**988886666666665555..458875.55679977651166689**************************************************** PP
TIGR01842 507 vvvithrpsllelvdkil 524
+++i+h++ +++v +i+
MMSYN1_0010 202 IIFISHKMDEIKQVANIA 219
**********99999886 PP
== domain 2 score: 40.9 bits; conditional E-value: 2.9e-13
TIGR01842 317 levenvslvpp.eekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdre.tlGksiGYlPqdve....LfeGtv 408
l+v n+++ + ++k + l+ ++++++Ge++a+ G g G+ L + ++G ++p+sG + +++ + + + ++ + ++P d + L++ +v
MMSYN1_0010 267 LDVINLTVKKDtNHKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKtRYDMGMSHIPEDRHkygmLLDFSV 364
556666665540455578999*********************************************999885515777889****975455599**** PP
TIGR01842 409 aeniaRfeenadaek...vieaaklagvhelilrlpkGYdteigeg.GaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelka 502
+eni e + ++ + i+ ++ +li++ + + g++ +LsgG +q+ + R + d l+++ P LD + + + + k+
MMSYN1_0010 365 EENIVSQEIDKKPFSqfgFINKKAISRYAQLIIKEFDIRGSRNGTAiARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKE 462
****9876655443222278888888888888875555555555442568*********************************99999********** PP
TIGR01842 503 rkitvvvithrp.sllelvdkilvlkdGal 531
+++++++++ ++++l+d+i+v++dG+l
MMSYN1_0010 463 KGRAILLVSYDLnEVIALADRIVVINDGKL 492
********98752799************87 PP
>> TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.4 1.2 1.4e-23 1e-21 3 217 .. 12 218 .. 10 223 .. 0.82
2 ! 39.6 0.1 1.2e-12 9.1e-11 19 207 .. 280 472 .. 268 487 .. 0.82
Alignments for each domain:
== domain 1 score: 75.4 bits; conditional E-value: 1.4e-23
TIGR02324 3 evedlsktfilhqqgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLr 100
e+++++k f + + + ++++++v++G++ al G+ GaGkstl+ l++ Y+p sg+i v+ ++e++ + ++ + ig v q +
MMSYN1_0010 12 EMQNITKMFLNG-----AIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVI-------SNPIKANKLGIGMVHQHFK 97
566666666532.....3456799************************************************.......4456677888********* PP
TIGR02324 101 viPRvsalev....vaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelike 194
+ + le v+++ + +++++ r++ ++++++++ L + + s G +qRv i + l + iL+ dePta L ++++ ++++k+
MMSYN1_0010 98 LVEVNTVLENiilgVEQTKSNIFLNKTKMRSELIDIMNKYDLYVDLDAKI-QDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKN 194
99999999861222344445555667777777777888888877776555.889******************************************** PP
TIGR02324 195 akargaaligifhd.eevrelvad 217
++++g ++i i h+ +e+++++ +
MMSYN1_0010 195 LQKAGKTIIFISHKmDEIKQVANI 218
*************73566666554 PP
== domain 2 score: 39.6 bits; conditional E-value: 1.2e-12
TIGR02324 19 vklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeiv.dlvkaserevlev..RrktigyvsqfLrviPRvsalevvae 113
k+ l+ +++v+ Ge+va++G G G+ l++++ + +p sg i++++ + + ++ + + + ++ r++ g f v + + e+ ++
MMSYN1_0010 280 HKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNsNIKTRYDMGMSHIpeDRHKYGMLLDFS-VEENIVSQEIDKK 376
5566788999*************************************9998654431344445556666633468899999998.999********** PP
TIGR02324 114 pllelGvereearak.akellarlnip.erLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifh 207
p + G+ +++a ++ a+ +++ ++i r + sGG++q+ + r + +d+ +L++ Pt Ld ++ v i + k++g a++ + +
MMSYN1_0010 377 PFSQFGFINKKAISRyAQLIIKEFDIRgSRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILLVSY 472
******98888876627778899***624556666689****************************************999999999999987655 PP
>> TIGR00958 3a01208: antigen peptide transporter 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 86.0 2.8 5.9e-27 4.5e-25 499 689 .. 30 225 .. 25 234 .. 0.85
2 ! 29.1 1.1 9.2e-10 7e-08 497 692 .. 285 493 .. 277 506 .. 0.79
Alignments for each domain:
== domain 1 score: 86.0 bits; conditional E-value: 5.9e-27
TIGR00958 499 dLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkp.lkeydhkylhrkvalVgqEPvlfs.gsvreNiaYGltktedeevtaaakaa 594
d+t++++ G++ alVG +G GKSt +++l lYqPt+G++ + gk+ + k + +++V q l + +v eNi G+++t+++ + +k+
MMSYN1_0010 30 DITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEeVISNPIKANKLGIGMVHQHFKLVEvNTVLENIILGVEQTKSNIFLNKTKMR 127
89*****************************************9862666667888889*******98886479*************99999888765 PP
TIGR00958 595 nahdFiselek.gydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa.eveqllqesk..saksrtvlliahrLstvekadkil.vlk 687
+ i ++k + + +++ k + +s+G +qr+ i + L rk +L+ De t+ L +++ llq +k +++++t++ i h++ ++++ +i+ v++
MMSYN1_0010 128 S--ELIDIMNKyDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPqQIQSLLQIMKnlQKAGKTIIFISHKMDEIKQVANIAtVIR 223
4..4444443314667889999*********************************9878999999855115679***************999963566 PP
TIGR00958 688 kg 689
g
MMSYN1_0010 224 LG 225
55 PP
== domain 2 score: 29.1 bits; conditional E-value: 9.2e-10
TIGR00958 497 lkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhky.lhrkvalV....gqEPvlfsgsvreNia.YGltktedee.. 586
l+ +++++pGe+va+ G G+G + + l +P +G ++ ++++ + k + + + + +l sv eNi ++k++ +
MMSYN1_0010 285 LETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTrYDMGMSHIpedrHKYGMLLDFSVEENIVsQEIDKKPFSQfg 382
677899*************************************99999988776641333344441111345789999*****972578888876622 PP
TIGR00958 587 .vtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa.eveqllqe..sksaksrtvlliahrLs.tvek 679
+ a + a+ i+e++ + lsgG +q+ + R + ++ +Li+ + t LD+ ++e++ + ++++k+r++ll+ L+ ++
MMSYN1_0010 383 fINKKAISRYAQLIIKEFDIRGSRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVgAIENVHSHilKEKEKGRAILLVSYDLNeVIAL 480
244455555677777777766666666666779********************************87777777776788999**********637899 PP
TIGR00958 680 adkilvlkkgsvv 692
ad+i+v++ g++
MMSYN1_0010 481 ADRIVVINDGKLI 493
**********985 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 68.0 0.2 2.7e-21 2.1e-19 17 193 .. 29 215 .. 16 220 .. 0.83
2 ! 38.1 0.0 3.8e-12 2.9e-10 3 184 .. 269 471 .. 267 479 .. 0.76
Alignments for each domain:
== domain 1 score: 68.0 bits; conditional E-value: 2.7e-21
TIGR01189 17 eglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeelly.lgHld.glKaeLsalEnLkfyaallq........se 104
+++++++ G++ +++G+nG+GK+tL+ il GL +p+sG++++n+ke +++ +a++l + H++ l + ++lEn+ + ++ +
MMSYN1_0010 29 DDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPIKANKLGIgMVHQHfKLVEVNTVLENIILGVEQTKsniflnktKM 126
578999**************************************999877776665554321345542577889*****9776655554555554323 PP
TIGR01189 105 qktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdlglkea 193
+ ++ + ++k +L d+ ++ +s G ++R+ + ++l ka + + DEPt+ l + ++ l +++++ + g +++ +h+ ++k++
MMSYN1_0010 127 RSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIFISHKMDEIKQV 215
33788999999999999**************************************************9998898999999987777765 PP
== domain 2 score: 38.1 bits; conditional E-value: 3.8e-12
TIGR01189 3 aeelaveRgervl...leglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelae..qrdelaeellyl...gHldglKaeLsalE 92
+ +l+v++++++ le+ ++++ +Ge+++v G G G+ L+ ++GL+kp sG + +++ ++ + + +++ + ++ H+ g+ + s++E
MMSYN1_0010 269 VINLTVKKDTNHKvygLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNsnIKTRYDMGMSHIpedRHKYGMLLDFSVEE 366
6678888887665112456678999*******************************9988866543301344455555565333699*********** PP
TIGR01189 93 nLkfyaallq...........seqktveealekvgLsgled..lpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlarg 177
n+ + + + + ++ ++ +++ +++g + ++++ Ls G +++ ++r + + l i+ Pt lD+ ++e +++++ + ++g
MMSYN1_0010 367 NIVSQEIDKKpfsqfgfinkkAISRYAQLIIKEFDIRGSRNgtAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKG 464
*97654444445556655332222245556789999998763367899*******************************************9999999 PP
TIGR01189 178 Givllat 184
++ll +
MMSYN1_0010 465 RAILLVS 471
9988865 PP
>> TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 71.7 3.3 1.8e-22 1.3e-20 1 185 [. 43 234 .. 43 301 .. 0.77
2 ! 36.7 0.3 7.7e-12 5.9e-10 3 180 .. 302 493 .. 300 506 .. 0.77
Alignments for each domain:
== domain 1 score: 71.7 bits; conditional E-value: 1.8e-22
TIGR01187 1 lLGpsGsGkttlLrllaGleeldsGkilldg.edvtevp..aekrsvnvvfqsyaLfPhmtveenvafgLkmrkvp....kaeikervkeaLelvqle 91
l+G G+Gk+tl+ +l Gl ++ sG i+++g e+v++ p a+k +++v q + L tv en+ g+ + k + k+++++ ++++ +l
MMSYN1_0010 43 LVGENGAGKSTLMSILFGLYQPTSGTIKVNGkEEVISNPikANKLGIGMVHQHFKLVEVNTVLENIILGVEQTKSNiflnKTKMRSELIDIMNKYDLY 140
6899************************987357888763367889**************************99652222677777788888999999 PP
TIGR01187 92 efakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGk.iaqigep 185
+ k++++s G +qrv + + + k +iL++Dep + L + + + + +k+lq k G t++++ h +e +++ +v+r Gk i+ + +
MMSYN1_0010 141 VDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQ-KAGKTIIFISHKMDEIKQVANIATVIRLGKkIVDLDVS 234
999*************************************9776666666677776.67*******************99****99725544444 PP
== domain 2 score: 36.7 bits; conditional E-value: 7.7e-12
TIGR01187 3 GpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrs.vnvvf.....qsyaLfPhmtveenvafgLkmrkvpkae...ikervk...eaLelv 88
G G G+ l++ + Gl ++ sG i+ ++ ++++ + r+ +++ y + +veen+ ++k p ++ i+++ + L +
MMSYN1_0010 302 GVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTRYdMGMSHipedrHKYGMLLDFSVEENIVS-QEIDKKPFSQfgfINKKAIsryAQLIIK 398
77899****************************999998853555443333368************974.4666666554222222222001223333 PP
TIGR01187 89 qleefakrk....psqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkia 180
+++ +++r+ lsGG +q+ + r + k ++L++ p LD +++ + + ++ G +++lv +D +e ++++dri+v+++Gk++
MMSYN1_0010 399 EFDIRGSRNgtaiARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKE-KEKGRAILLVSYDLNEVIALADRIVVINDGKLI 493
44445555511114579********************************9999998887664.556****************************96 PP
>> TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 79.5 2.5 6.3e-25 4.8e-23 450 655 .. 9 219 .. 2 230 .. 0.86
2 ! 18.2 0.0 2.2e-06 0.00017 468 519 .. 284 335 .. 247 349 .. 0.80
3 ! 9.0 0.1 0.0013 0.1 587 663 .. 413 493 .. 408 500 .. 0.83
Alignments for each domain:
== domain 1 score: 79.5 bits; conditional E-value: 6.3e-25
TIGR03797 450 GaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqd.lekldvqavRrqlGvVLQngrlls.gsile 545
aie++++t ++ + + + dd+++k+++G+ a+vG+ G+GKStl+ +L+g +P+sG++ G++ + + ++a + +G+V Q+ +l+ +++le
MMSYN1_0010 9 YAIEMQNITKMFLNGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEeVISNPIKANKLGIGMVHQHFKLVEvNTVLE 106
589*********99999999*********************************************85378888999999**********975379*** PP
TIGR03797 546 niaggasltldea.weaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDN.rtQai..VsesleklkvtRi 639
ni+ g++ t + + +m + Di + l+ ++ + +S G +QR+ i + l rk il+fDE T L + Q++ ++++l+k t i
MMSYN1_0010 107 NIILGVEQTKSNIfLNKTKMRSELIDIMN-KYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPqQIQSLlqIMKNLQKAGKTII 203
***99997776661566777766666655.479******************************************86156764337899999999*** PP
TIGR03797 640 viAHRLSTirnadril 655
i H++ i++ +i
MMSYN1_0010 204 FISHKMDEIKQVANIA 219
*********9987774 PP
== domain 2 score: 18.2 bits; conditional E-value: 2.2e-06
TIGR03797 468 vLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlek 519
L+ ++k++pGe va+ G G G+ l++ + g kP sG ++y ++ +
MMSYN1_0010 284 GLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVN 335
48999****************************************7666655 PP
== domain 3 score: 9.0 bits; conditional E-value: 0.0013
TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiV.sesleklkvtR..iviAHRLST.irnadrilvleeGrvv 663
+lSGG +Q+ ++ r + + +l++ T LD + + V s+ l++ + R +++ L i+ adri+v+++G+++
MMSYN1_0010 413 RGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVhSHILKEKEKGRaiLLVSYDLNEvIALADRIVVINDGKLI 493
689*******************************9888777245577777777435689999861677**********986 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.5 3.9 7e-23 5.3e-21 452 663 .. 7 220 .. 3 231 .. 0.85
2 ! 34.0 1.8 3.1e-11 2.4e-09 473 671 .. 285 494 .. 266 506 .. 0.75
Alignments for each domain:
== domain 1 score: 72.5 bits; conditional E-value: 7e-23
TIGR01846 452 lkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrr.qvgvvlqenvlfs.rsi 547
++ aie++ni+ + + + + +++++++k+G++ +vG+ G+Gkstl +l ly P G + v+g++ + +P + +g+v q l++ +++
MMSYN1_0010 7 IDYAIEMQNITKMFLNGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPIKANKlGIGMVHQHFKLVEvNTV 104
6778999999999999999999*****************************************************8765538******9888763789 PP
TIGR01846 548 rdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic.kgrt 644
+ni l+ + + + ++ +k+ i++ + y +++ k +s G +qr+ + + l + il++de t+ l + +++ + ++++ +g+t
MMSYN1_0010 105 LENIILGVEQTKSNIFLNKTKMRSELIDIMNKYDLY-VDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQkAGKT 201
********9999998888888876544444443333.56789999********************************86665555555555441599* PP
TIGR01846 645 viiiahrlstvraadrilv 663
+i i+h+++ ++++ +i +
MMSYN1_0010 202 IIFISHKMDEIKQVANIAT 220
*************999965 PP
== domain 2 score: 34.0 bits; conditional E-value: 3.1e-11
TIGR01846 473 lsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvv..lqen....vlfsrsirdnialak.Paiseekv 563
l+ +++++++Ge++ + G G G+ l + + l P G ++ + ++ + r ++g+ + +l++ s+ +ni + + ++ +
MMSYN1_0010 285 LETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSN-IKTRYDMGMShiPEDRhkygMLLDFSVEENIVSQEiDKKPFSQF 381
78899*************************************99988876655.445777776421333233339**********8654233445554 PP
TIGR01846 564 iaaakla...GahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyes.eavimrnlreickgrtviiiahrlstv.r 656
+ k a a+ i+e + + lsGG +q+ + r + ++ +li+ + t ld + e+v + l+e kgr+++ +++ l+ v
MMSYN1_0010 382 GFINKKAisrYAQLIIKEFDIRGSRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAiENVHSHILKEKEKGRAILLVSYDLNEViA 479
4444444100444455544322222223334569*******************************98735555667899**************97625 PP
TIGR01846 657 aadrilvlekGkive 671
adri+v+++Gk++
MMSYN1_0010 480 LADRIVVINDGKLIG 494
69*********9875 PP
>> TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.1 12.0 1.3e-23 1e-21 467 685 .. 4 226 .. 1 237 [. 0.79
2 ! 27.6 3.1 3.2e-09 2.4e-07 490 688 .. 285 494 .. 231 504 .. 0.76
Alignments for each domain:
== domain 1 score: 75.1 bits; conditional E-value: 1.3e-23
TIGR01193 467 lenlngdievndvsysyGygsevl.edislkikknekitlvGlsGsGkstlakllvkffqaesGeillngks.lkdidkhelrqlinylPqePfifs. 561
+++ ie+++++ + g+ v +di++k+kk + +lvG G+Gkstl+ +l +++q++sG+i++ngk+ + +++ + i + q+ + +
MMSYN1_0010 4 EQKIDYAIEMQNITKMFLNGAIVAnDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEeVISNPIKANKLGIGMVHQHFKLVEv 101
556677899999998887777665368******************************************9853444445566678999***9766542 PP
TIGR01193 562 GsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltek...kivenllk 656
++len++lg ++ s+ ++k+ +e+ d ++k +l +l + + is+G +qr+ + + l ++++l++de t+ l + +i++nl k
MMSYN1_0010 102 NTVLENIILGVEQTKSNIFLNKTKMRSELIDIMNKYDL--YVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQsllQIMKNLQK 197
89********9888887777777766777666666554..467788899******************************9965544411155666555 PP
TIGR01193 657 lkdktiifvahrlsvakksdkiiv.ldeGk 685
ktiif++h+++ k++ +i + + Gk
MMSYN1_0010 198 A-GKTIIFISHKMDEIKQVANIATvIRLGK 226
4.8**********99999999865145565 PP
== domain 2 score: 27.6 bits; conditional E-value: 3.2e-09
TIGR01193 490 ledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhe.lrqlinylPqeP....fifsGsilenlllga..kenvsqee 580
le ++k++ e +++ G+ G G+ l++ + ++ ++ sG i ++++ + ++++ ++++P + ++++ s+ en++ + k+ sq
MMSYN1_0010 285 LETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTrYDMGMSHIPEDRhkygMLLDFSVEENIVSQEidKKPFSQFG 382
78899********************************************99886551556799***99622225778899999987752233344444 PP
TIGR01193 581 ikkaveiaeikd.dieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdk..tiifvahrls.vakk 674
++ i+ + i+++++ + + + a +sgG +q+ + r + d ++li+ + t ld+ +++ +++lk k+k +i++v++ l+ v
MMSYN1_0010 383 FINKKAISRYAQlIIKEFDIRGSRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKgrAILLVSYDLNeVIAL 480
443334443332134445443333333345779*******************************************999985479*****99549999 PP
TIGR01193 675 sdkiivldeGkiie 688
+d+i+v+++Gk+i
MMSYN1_0010 481 ADRIVVINDGKLIG 494
***********995 PP
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.2 5.1 1.2e-18 9e-17 3 212 .. 29 235 .. 27 255 .. 0.80
2 ? 4.9 0.0 0.047 3.6 5 60 .. 288 339 .. 285 351 .. 0.83
3 ! 33.1 0.0 1.1e-10 8.1e-09 125 212 .. 414 500 .. 386 509 .. 0.92
Alignments for each domain:
== domain 1 score: 59.2 bits; conditional E-value: 1.2e-18
TIGR02770 3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgke.laalalrgreialilqnPrsafnPlltikeqlletlkalekls.kq 98
+d+ +++k+g + alvGe G+Gks+ + + gl + tsG i ++gke + ++ ++ +++++ + + + t+ e+++ ++++++ +
MMSYN1_0010 29 DDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQ----PTSGTIKVNGKEeVISNPIKANKLGIGMVHQHFKLVEVNTVLENIILGVEQTKSNIfLN 122
6899********************98888888887....699******98637777899999888888888889999999999987777766654444 PP
TIGR02770 99 akelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladev 196
+++ e ++ ++ + l+ ++s G+ qRv i l +a +l+ DePt+ l ++ +L+ +++l +k g +i++i+h + + ++a+
MMSYN1_0010 123 KTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNL-QKAGKTIIFISHKMDEIKQVANIA 219
44444444555555555566999999*****************************999887777777777766.678999****************** PP
TIGR02770 197 avmekGkivergtvke 212
+v++ Gk + +v+
MMSYN1_0010 220 TVIRLGKKIVDLDVSM 235
******8776666554 PP
== domain 2 score: 4.9 bits; conditional E-value: 0.047
TIGR02770 5 vnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalr 60
n++++ g+++a+ G G G+ +ai gl + +sG i+ + ++ +++++
MMSYN1_0010 288 FNIKVRPGEIVAVAGVEGNGQRELIQAITGLVK----PVSGGIVYKKINIVNSNIK 339
6899*************************9988....5777777777777776665 PP
== domain 3 score: 33.1 bits; conditional E-value: 1.1e-10
TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvke 212
lsGG q+ ++ + + lli Pt lDv + +v +++ + ++++g +ill+++Dl+ v lad ++v+++Gk++ + ++k+
MMSYN1_0010 414 GLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILK-EKEKGRAILLVSYDLNEVIALADRIVVINDGKLIGELPAKK 500
59*********************************99999988766.5789******************************9877765 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 67.5 3.0 2.9e-21 2.2e-19 331 536 .. 7 215 .. 2 234 .. 0.83
2 ! 32.4 2.0 1.2e-10 9.1e-09 348 549 .. 282 494 .. 268 526 .. 0.77
Alignments for each domain:
== domain 1 score: 67.5 bits; conditional E-value: 2.9e-21
TIGR01192 331 vkgavefrdisfefanssq.gvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvd.iatvtreslrksiatvfqdaglln.rsi 425
+ a+e+++i+ f n + d+++++k g+ a+vg gagk+tl+ +l +y+p+sg i ++g + + + ++ + i v q l++ ++
MMSYN1_0010 7 IDYAIEMQNITKMFLNGAIvANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEeVISNPIKANKLGIGMVHQHFKLVEvNTV 104
56789***********98614568*******************************************863555556777889***********84689 PP
TIGR01192 426 renirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrkn.rt 522
eni lg e++ + ++ +k + i ++ + y l + + +s g +qr+ i + + + a ilv+de t+ l + + + + l+k +t
MMSYN1_0010 105 LENIILGVEQTKSNIFLNKTKMRSELIDIMNKYDLYVDL-DAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAgKT 201
**********99999999888877655555555555433.567789*******************************999999999999999997255 PP
TIGR01192 523 tfiiahrlstvrea 536
+ i+h++ +++
MMSYN1_0010 202 IIFISHKMDEIKQV 215
56699**9999874 PP
== domain 2 score: 32.4 bits; conditional E-value: 1.2e-10
TIGR01192 348 sqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvt.reslrksiatvfqd....agllnrsirenirlgredatdee 440
g+ ++++ g+ va+ g g g+ li+ + + +p sg i+ ++i + + ++ + +d ll+ s+ eni d
MMSYN1_0010 282 VYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNiKTRYDMGMSHIPEDrhkyGMLLDFSVEENIVSQEIDKKPFS 379
46778888999***********************************999998655415556667777776622224589********65544444444 PP
TIGR01192 441 vveaakaaaasdfiekrlkgydtlvgergnr....lsggerqrlaiarailknapilvldeatsaldvetearvkdai.dalrknrttfiiahrlstv 533
+ + a s + + +k++d g+ lsgg++q+ + r i k+ +l++ + t ldv + v++ i +k r+ +++++ l v
MMSYN1_0010 380 QFGFINKKAISRYAQLIIKEFDIRGSRNGTAiargLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHIlKEKEKGRAILLVSYDLNEV 477
444444445555555555555554444443212249*********************************9999987762667899**********865 PP
TIGR01192 534 .readlvlfldqgrlie 549
ad ++ +++g+li
MMSYN1_0010 478 iALADRIVVINDGKLIG 494
167***********995 PP
>> TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.2 0.6 3.3e-11 2.5e-09 320 382 .. 8 72 .. 2 80 .. 0.87
2 ? 2.2 0.1 0.17 13 63 99 .. 82 118 .. 73 138 .. 0.84
3 ! 26.0 0.0 1e-08 7.7e-07 154 227 .. 142 218 .. 122 229 .. 0.81
4 ! 13.5 0.1 6.4e-05 0.0049 327 380 .. 273 327 .. 254 353 .. 0.87
5 ! 14.5 0.0 3.2e-05 0.0024 426 499 .. 396 473 .. 364 490 .. 0.80
Alignments for each domain:
== domain 1 score: 34.2 bits; conditional E-value: 3.3e-11
TIGR03719 320 dkvievenlskafgdklli..ddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiG 382
d ie++n++k f + ++ dd+++k+ kg i ++G nGaGkstl+ ++ g +p sG++k+
MMSYN1_0010 8 DYAIEMQNITKMFLNGAIVanDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVN 72
5679*********7665543389***************************************985 PP
== domain 2 score: 2.2 bits; conditional E-value: 0.17
TIGR03719 63 laaegikvGyleqePkldeektvrenveegvaeikea 99
++a+++ +G+++q kl e +tv en+ gv+++k+
MMSYN1_0010 82 IKANKLGIGMVHQHFKLVEVNTVLENIILGVEQTKSN 118
5677889************************998875 PP
== domain 3 score: 26.0 bits; conditional E-value: 1e-08
TIGR03719 154 eedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeyk...GtvvavthdryfldnvaeW 227
+ dak++++s G ++rv + ++l k d+l++dePt l + ++ l + +k+ + t++ + h + +va+
MMSYN1_0010 142 DLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQkagKTIIFISHKMDEIKQVANI 218
679************************************999998887766655422169999***98888777765 PP
== domain 4 score: 13.5 bits; conditional E-value: 6.4e-05
TIGR03719 327 nlskafgdkll.iddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelk 380
++k ++k+ ++ +++k+ +g iv v G +G G+ l++ itg kp sG +
MMSYN1_0010 273 TVKKDTNHKVYgLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIV 327
46788888886589************************************99885 PP
== domain 5 score: 14.5 bits; conditional E-value: 3.2e-05
TIGR03719 426 yvgrfnfkGadqqkkvg.elsGGernrvhlakllkeggnvllldePtndldvetlraleealle..faG.cavvishd 499
+ +f+ +G+ + lsGG++++ + + +k+++++l++ +Pt ldv +++ + + +l+ G +++++s+d
MMSYN1_0010 396 IIKEFDIRGSRNGTAIArGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKekEKGrAILLVSYD 473
5778999999888776526**********************************9999988876411234133455665 PP
>> TIGR01978 sufC: FeS assembly ATPase SufC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.9 8.8 2e-16 1.5e-14 17 228 .. 29 232 .. 11 243 .. 0.85
2 ! 37.2 5.8 6.5e-12 4.9e-10 2 225 .. 268 494 .. 260 505 .. 0.76
Alignments for each domain:
== domain 1 score: 51.9 bits; conditional E-value: 2e-16
TIGR01978 17 kglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeel 114
++++++vkkG++ha++G nG+GkstL+++l g y+ tsG+ik++g++ + ++ + G+ + q+ + v++++ l + + v++++ + l
MMSYN1_0010 29 DDITIKVKKGDIHALVGENGAGKSTLMSILFGL--YQPTSGTIKVNGKEEVISNPIKANKLGIGMVHQHFKL---VEVNTVLENIILGVEQTKSNIFL 121
478999**************************6..6789*********99999999999*******999764...56777888888888888888899 PP
TIGR01978 115 dllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikP 212
+ ++ +++l + +++++l +l + + s G ++r eil+++ + ++ + De + l ++ + + +++l++ k+++ i+h+ +++++
MMSYN1_0010 122 NKTKMRSELIDIMNKYDLYVDLDAKI--QDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIFISHKMDEIKQVA- 216
99999999999999999999887765..56899*******************************************************998888775. PP
TIGR01978 213 dvvhvlldGrivksGd 228
+ v+ G+ + + d
MMSYN1_0010 217 NIATVIRLGKKIVDLD 232
4555666665555555 PP
== domain 2 score: 37.2 bits; conditional E-value: 6.5e-12
TIGR01978 2 kikdlhvsved.kei..LkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeei..pGvsn 94
++ +l+v+ + +++ L+ +n++v++Ge++a+ G G+G+ L ++++g ++ +sG i +k+ ++++ +++ r G+ pe+ G+
MMSYN1_0010 268 DVINLTVKKDTnHKVygLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGL--VKPVSGGIVYKKINIVNSNIKTRYDMGMS---HIPEDRhkYGMLL 360
566777766541233348999****************************97..56689999************999999985...3444440045555 PP
TIGR01978 95 keflrsalnavrkargeeeldllefekl......lkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaeg 186
+ + + n v+++ ++++++++ f ++ + ++ +++ + + G sGG++++ + + + +l i+ GlDv a+ v ++
MMSYN1_0010 361 DFSVEE--NIVSQEIDKKPFSQFGFINKkaisryAQLIIKEFDIRGSRNGTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSH 456
444444..5555556777777777753311000033344445555566777899**********99998888999*********************** PP
TIGR01978 187 vnklreeekalliithyerllelikPdvvhvlldGrivk 225
+ k +e+ +a+l++++ + + ++ d + v+ dG+++
MMSYN1_0010 457 ILKEKEKGRAILLVSYDLNEVIAL-ADRIVVINDGKLIG 494
***************875544444.69999*****9985 PP
>> TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.3 0.6 7.9e-19 6e-17 359 545 .. 30 227 .. 11 235 .. 0.76
2 ! 17.5 0.0 3.7e-06 0.00028 347 437 .. 275 366 .. 256 394 .. 0.79
3 ! 6.8 0.0 0.0066 0.5 517 550 .. 461 495 .. 451 499 .. 0.88
Alignments for each domain:
== domain 1 score: 59.3 bits; conditional E-value: 7.9e-19
TIGR01194 359 pidlriasGelvyivGenGcGkstliklllGlyipqeGellldGe..avsdesr......ddyrdlfsavfadyylfddlvqpdekkqasldqatty. 447
i +++++G++ +vGenG Gkstl+ +l Gly+p +G + ++G+ +s+ + + + f v + l + +++ ++ k + t+
MMSYN1_0010 30 DITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKeeVISNPIKanklgiGMVHQHFKLVEVNTVLENIILGVEQTKSNIFLNKTKMr 127
588999**************************************522233333311111134567777777777777777787666665555555550 PP
TIGR01194 448 lsrleledkvkve.dlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishd.dryfelad..rlik 541
+ +++ +k ++ dl+ d+s+G ++r+ ++ + +l++de +a p + + +++ +l++ Gkti+ ish d+ ++a+ +i+
MMSYN1_0010 128 SELIDIMNKYDLYvDLDA-KIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSL-LQIMKNLQKAGKTIIFISHKmDEIKQVANiaTVIR 223
5556999**998625555.599********************************99876665.46899**************7577777776335677 PP
TIGR01194 542 ladG 545
l +
MMSYN1_0010 224 LGKK 227
7654 PP
== domain 2 score: 17.5 bits; conditional E-value: 3.7e-06
TIGR01194 347 kdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldG.eavsdesrddyrdlfsavfadyylfddlvqpdekk 437
k+ + + l ++++ Ge+v + G +G G+ li+ + Gl +p +G ++ + + v ++ + y +s + d + + l++ ++
MMSYN1_0010 275 KKDTNHKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKiNIVNSNIKTRYDMGMSHIPEDRHKYGMLLDFSVEE 366
55556677889999*************************************99876255777888888888999999999888887755444 PP
== domain 3 score: 6.8 bits; conditional E-value: 0.0066
TIGR01194 517 krrGktilvishd.dryfeladrlikladGkvvke 550
k +G++il++s+d ++ ladr++ + dGk++ e
MMSYN1_0010 461 KEKGRAILLVSYDlNEVIALADRIVVINDGKLIGE 495
789**********66789*************9977 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.8 1.2 8e-17 6.1e-15 43 224 .. 30 207 .. 3 211 .. 0.82
2 ! 21.9 0.1 1.7e-07 1.3e-05 47 246 .. 291 493 .. 250 501 .. 0.70
Alignments for each domain:
== domain 1 score: 52.8 bits; conditional E-value: 8e-17
TIGR00955 43 nvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGek.veakemrai...sayvqqddlfiptltvrehLmfsahlrlkrrltkk. 135
+++ ++k+G++ A++G GaGK+TL+++l + + g++ +nG++ v ++ ++a+ + v+q+ +++ tv e++++ + ++ +k
MMSYN1_0010 30 DITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTS---GTIKVNGKEeVISNPIKANklgIGMVHQHFKLVEVNTVLENIILGVEQTKSNIFLNKt 124
677789***********************98877643...4699999752444444444122699******************987765555444442 PP
TIGR00955 136 ekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiH 224
+ r +++++ L d +i+ +S G ++R+ + + l + +L++DEPT+ L +s+++++k+l + gkt+i H
MMSYN1_0010 125 KMRSELIDIMNKYDLYVDLDAKIQ------DISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIFISH 207
556677778888888887788887......5******************************************************9877 PP
== domain 2 score: 21.9 bits; conditional E-value: 1.7e-07
TIGR00955 47 vaksGellAvlGsSGaGKtTLlnalafrse...kglkvsgdvllnGekveakemraisayvqqddlfiptl...tvrehLmfsahlrlkrr....ltk 134
++++Ge++Av G G G L++a++ + g+ ++ ++n + ++ +++ +d ++l +v+e+++ + + + + ++k
MMSYN1_0010 291 KVRPGEIVAVAGVEGNGQRELIQAITGLVKpvsGGIVYKKINIVNSNIKTR--YDMGMSHIPEDRHKYGMLldfSVEENIVSQEIDKKPFSqfgfINK 386
678888899999999998888888887654111455554434444433333..333445666655544443222777777766555544331111334 PP
TIGR00955 135 kekrerveevleelgLrkcad.trigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsself 231
k + + +++e +r ++ t i +glSgG++++ ++ e+ +d lL++ PT GLD +v + + k +kg+ il + e+
MMSYN1_0010 387 KAISRYAQLIIKEFDIRGSRNgTAIA-----RGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRA-ILLVSYDLNEVI 478
44444556678889888887734555.....8****************************************9999999999995.566667789999 PP
TIGR00955 232 elfdkiillaeGrvv 246
l d+i+++++G+ +
MMSYN1_0010 479 ALADRIVVINDGKLI 493
99********99975 PP
>> TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.2 1.0 1.3e-11 1e-09 20 217 .. 29 228 .. 10 237 .. 0.66
2 ! 36.4 0.1 1.2e-11 8.8e-10 2 217 .. 265 493 .. 264 500 .. 0.74
Alignments for each domain:
== domain 1 score: 36.2 bits; conditional E-value: 1.3e-11
TIGR02323 20 r.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrme.....vsaGanigerll 110
+++ + G++ ++vGe G+Gkstl++ l + ++++G+++ + ++ e++ s++ + + G+vhq+ + + ++ + G + ++ +
MMSYN1_0010 29 DdITIkVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKE---EVI--SNPIKA--NKLGIGMVHQHFKLVEVNtvlenIILGVEQTKSNI 119
357777889********************************998887...443..444443..23456889998875544400000233333333333 PP
TIGR02323 111 avga..rhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrpr.lvfmeptGGlvsvqarll..llrglvrelglaviivth.lavar 202
+ + i +k+ v++da k + +s G+qqr++i ++l + lvf ept l q + l ++++l ++g ++i ++h + ++
MMSYN1_0010 120 FLNKtkMRSELIDIMNKYDLYVDLDA---KIQDISVGLQQRVEILKVLYRKADiLVFDEPTAVLTPQQIQSLlqIMKNLQ-KAGKTIIFISHkMDEIK 213
22220022222233333444455554...77899**************9987627788******7666554322666665.599999*9**9999999 PP
TIGR02323 203 llaqrllvmkqGrvv 217
+a+ v++ G+ +
MMSYN1_0010 214 QVANIATVIRLGKKI 228
999999999988744 PP
== domain 2 score: 36.4 bits; conditional E-value: 1.2e-11
TIGR02323 2 pllevsels.ksygskk..gcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprG 94
p+l+v +l+ k+ +++k g++ ++ ++pGe++++ G G G+ l++a+++ + + +G + y++ + + s+ + r+ + +++ G
MMSYN1_0010 265 PILDVINLTvKKDTNHKvyGLEtFNIkVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKIN----I-VNSNIKTRYDMGMSHIPEDRHKYG 357
78888888733334443113333444799***********************************9877....3.34666777666665555667888* PP
TIGR02323 95 lrmevsaGanigerllav.garhyGkiraaa.....k.wlekveidaari...kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarlll 180
+ ++ s ni + + +G i+++a + +++ +i +r + +sGG qq+ + r++ l+++ +pt Gl v +
MMSYN1_0010 358 MLLDFSVEENIVSQEIDKkPFSQFGFINKKAisryaQlIIKEFDIRGSRNgtaIARGLSGGNQQKAIVGREIKKDHDLLIVvQPTRGLdVGAIENVHS 455
**********98776654145567766544311111446788999888876567889**************99877665544******7765555443 PP
TIGR02323 181 lrglvrelglaviivth.lavarllaqrllvmkqGrvv 217
+e g a+++v++ l + la+r++v++ G+++
MMSYN1_0010 456 HILKEKEKGRAILLVSYdLNEVIALADRIVVINDGKLI 493
223346778999***999*****************988 PP
>> TIGR00956 3a01205: pleiotropic drug resistance family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.7 0.6 3.1e-12 2.3e-10 780 960 .. 29 207 .. 3 212 .. 0.76
2 ! 25.7 0.2 6.2e-09 4.7e-07 60 300 .. 268 503 .. 226 507 .. 0.83
Alignments for each domain:
== domain 1 score: 36.7 bits; conditional E-value: 3.1e-12
TIGR00956 780 devdGwvkPGkltALmGasGAGkttLlnvLae..RvttGvit...egdrlvngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskk 872
d+++ vk G + AL+G+ GAGk tL+ +L + t G i+ ++++++n k + iG v+q+ +e tv e ++ +++ +k
MMSYN1_0010 29 DDITIKVKKGDIHALVGENGAGKSTLMSILFGlyQPTSGTIKvngKEEVISNPIKA---NKLGIGMVHQHFKLVEVNTVLENIILGVEQTKSNIFLNK 123
5677889**********************987324578888631123344444433...4568*******9999**********99887777777776 PP
TIGR00956 873 ekneyveeviklleles.ya..dAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiH 960
k++ e+i++++ + y+ dA + ++v +r+ i L k ++l+F DePt+ L q s+++++++l +aG++i+ H
MMSYN1_0010 124 TKMR--SELIDIMNKYDlYVdlDAKIQ----DISVGLQQRVEILKVLYRKADILVF-DEPTAVLTPQQIQSLLQIMKNLQKAGKTIIFISH 207
6665..788888754331441134444....5555556789999999999988887.*****************************97766 PP
== domain 2 score: 25.7 bits; conditional E-value: 6.2e-09
TIGR00956 60 eilrklkkekeskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdgls..keeikkhyrgdvvYsaetdvHlpsl.. 153
++++ k+++++k+ l+ + ++pge+v v G g G l+++i++ ++ +++ i Y+ ++ + +ik +y + + e ++ l
MMSYN1_0010 268 DVINLTVKKDTNHKVYGLETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKP----VSGGIVYKKINivNSNIKTRYDMGMSHIPEDRHKYGMLld 361
46777788889999999*******************************987764....6778999876532799******999999998888887644 PP
TIGR00956 154 .tvketLdfaarlktpqnRvkgvsreeyakkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvk 250
+v+e + k p ++++ +++ a+++++ + ++ ++n G + RG+sGG++++ ++ + + ++++ + trGLD a+e v+
MMSYN1_0010 362 fSVEENIVSQEIDKKPFSQFGFINKK-AISRYAQLIIKEFDIRGSRN---GTAIARGLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVG-AIENVH 454
48999998888888888888777765.57899********9999888...899************************************75.788888 PP
TIGR00956 251 alktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkadkake 300
+ + + l+ y +++ l d++vv+++Gk i +a+kak+
MMSYN1_0010 455 SHILKEKEKGRAILLVSYDL-NEVIALADRIVVINDGKLIGELPAKKAKK 503
75555555566666666765.67889**************9999999885 PP
>> TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.5 1.6 3.2e-12 2.4e-10 1221 1417 .. 14 214 .. 2 232 .. 0.50
2 ! 8.3 0.0 0.001 0.076 442 484 .. 285 327 .. 232 344 .. 0.85
3 ! 10.0 0.0 0.00031 0.023 548 648 .. 414 513 .. 396 531 .. 0.84
Alignments for each domain:
== domain 1 score: 36.5 bits; conditional E-value: 3.2e-12
TIGR01271 1221 kdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvs.wnsvtlqkwrkafgvipqkv.filsgtfrknld 1313
+++t + ++ +d+++ v+ g+ l+g g+gkstl+s l+ l + t g i+++g s ++ + +g++ q+ ++ t n+
MMSYN1_0010 14 QNITKMFLNGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQpTSGTIKVNGKEeVISNPIKANKLGIGMVHQHFkLVEVNTVLENII 109
555555555444445556666666666666666666666666666655432556666665431223334444555566665541223345555544 PP
TIGR01271 1314 pyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyv..lsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqa.fsnctvi 1406
+ + +i+ ++ ++s + ++ +k d+ + + +s g +q + + + + ka il++dep+a l p +q + + +k+ + t+i
MMSYN1_0010 110 LGVEQTKSNIFL--NKTKMRSELIDIMNKYDLYVDLDAKIqdISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQIMKNLqKAGKTII 203
443334444432..3334444444444454443322222212555666666666666666666666666666666666655555554313445555 PP
TIGR01271 1407 lsehrvealle 1417
+ h+++ + +
MMSYN1_0010 204 FISHKMDEIKQ 214
55555554433 PP
== domain 2 score: 8.3 bits; conditional E-value: 0.001
TIGR01271 442 lknislklekgqllavagstgsgkssllmmilgelepsegkik 484
l ++k+ g+++avag g g+ l+ i g ++p g i
MMSYN1_0010 285 LETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIV 327
6778999999***********************9999998875 PP
== domain 3 score: 10.0 bits; conditional E-value: 0.00031
TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtskl.ehlkkadkilllhegscyfygtfselqakkpdfssk 644
lsgg++ + + r + kd dl ++ p ldv + ++ + l ++ +lv+ l e + ad+i+++ +g+ + g + +akk ++ +
MMSYN1_0010 414 GLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILLVSYDLnEVIALADRIVVINDGK--LIGELPAKKAKKEEIGAL 509
49***********************************9*9999999888888888999998355789*********97..568888888888888777 PP
TIGR01271 645 llgl 648
++g
MMSYN1_0010 510 MIGQ 513
7774 PP
>> TIGR00630 uvra: excinuclease ABC subunit A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.7 0.1 0.042 3.2 614 651 .. 20 56 .. 1 88 [. 0.74
2 ! 38.4 3.5 1.4e-12 1.1e-10 790 900 .. 110 218 .. 90 227 .. 0.84
3 ? 2.8 0.2 0.081 6.2 613 653 .. 272 315 .. 238 340 .. 0.75
4 ! 13.1 0.1 6.2e-05 0.0047 826 902 .. 412 486 .. 378 498 .. 0.82
Alignments for each domain:
== domain 1 score: 3.7 bits; conditional E-value: 0.042
TIGR00630 614 tlkgakennlkdidvsiplglltvitGvsgsGkstLin 651
l+ga n di+++++ g + ++ G g+GkstL+
MMSYN1_0010 20 FLNGAIVAN-DDITIKVKKGDIHALVGENGAGKSTLMS 56
455555555.6899999999999999999999999975 PP
== domain 2 score: 38.4 bits; conditional E-value: 1.4e-12
TIGR00630 790 mtveea.keffeavpkisrklellvdvGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvv 886
+ ve+ ++ f + +k++ l +++ Y+ l + + +s G qrv + k L +++ + ++DePt+ L + i+ Ll+++++l ++G+t++
MMSYN1_0010 110 LGVEQTkSNIFLNKTKMRSELIDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKAD---ILVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIF 204
455554147899999999998888888888*************************99875...99********************************* PP
TIGR00630 887 iehnldviksaDyi 900
i h +d ik+ i
MMSYN1_0010 205 ISHKMDEIKQVANI 218
********986543 PP
== domain 3 score: 2.8 bits; conditional E-value: 0.081
TIGR00630 613 ltlkgakenn...lkdidvsiplglltvitGvsgsGkstLindi 653
lt+k+ ++ l +++++ g++++++Gv g G+ Li+ i
MMSYN1_0010 272 LTVKKDTNHKvygLETFNIKVRPGEIVAVAGVEGNGQRELIQAI 315
5555554443222778899**********************977 PP
== domain 4 score: 13.1 bits; conditional E-value: 6.2e-05
TIGR00630 826 attLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnl.dviksaDyiid 902
a LsGG+ q+ + +e++k + l i+ Pt GL + i+++ + + + +kG +++++ ++l +vi aD i+
MMSYN1_0010 412 ARGLSGGNQQKAIVGREIKKD---HDLLIVVQPTRGLDVGAIENVHSHILKEKEKGRAILLVSYDLnEVIALADRIVV 486
568*************99875...5699999***************999999*************9559*****9984 PP
>> TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.5 2.1 2.5e-11 1.9e-09 635 832 .. 9 219 .. 3 232 .. 0.63
2 ! 7.6 1.8 0.0017 0.13 1303 1496 .. 286 491 .. 267 510 .. 0.42
Alignments for each domain:
== domain 1 score: 33.5 bits; conditional E-value: 2.5e-11
TIGR00957 635 nsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgs..............vayvpqqa.wiqndslre 717
++i ++n t + ++ + + +t+++ +g + a+vg+ g gks+l+s l++ + g ++++g + v q ++ +++ e
MMSYN1_0010 9 YAIEMQNITKMFLNGAIVANDDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKeevisnpikanklgIGMVHQHFkLVEVNTVLE 106
67778888888888888888888888888888888888888888888888887776666655554311111111111111334444431355677788 PP
TIGR00957 718 nilfgkaleekyykavleacalladl.eilpsgd.rteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknk 813
ni++g + + + l+ + ++l +i+ d ++ k ++s g +qrv + + +y +adi ++d+p + + + +++ + ++k
MMSYN1_0010 107 NIILGVEQ--TKSNIFLNKTKMRSELiDIMNKYDlYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLLQI--MKNLQKAGK 200
88888543..33333444444444432566666624678888888888888888888888888888888888777766655555542..233345678 PP
TIGR00957 814 trilvthgisylpqvdvii 832
t i+++h + + qv i
MMSYN1_0010 201 TIIFISHKMDEIKQVANIA 219
8888888888888876553 PP
== domain 2 score: 7.6 bits; conditional E-value: 0.0017
TIGR00957 1303 rdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhd.lrfkltiipqdpvlfsgslrmnld..pfsqysdeevwlal 1395
+n++++ ge v + g g g+ l ++ + + g i+ +ni + ++ + ++ ip+d + l + ++ sq d++ + +
MMSYN1_0010 286 ETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIVNSNIKTrYDMGMSHIPEDRHKYGMLLDFSVEenIVSQEIDKKPFSQF 381
444555555555555555555555555555555555555555555555544443212233344555544433333333221023333333333332 PP
TIGR00957 1396 elah...lkdfvsalpdkldfecaeggen....lsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfed.ctvltiahrlnti 1483
+ + + +++d + + g ls g++q + r + + +l++ + t +d+ + + + s i + e+ ++l +++ ln +
MMSYN1_0010 382 GFINkkaISRYAQLIIKEFDIRGSRNGTAiargLSGGNQQKAIVGREIKKDHDLLIVVQPTRGLDVGAIENVHSHILKEKEKgRAILLVSYDLNEV 477
222200022222223333333333333221111444445555555555555555555555555555444444444433333213444445555544 PP
TIGR00957 1484 mdyt.rvlvldkge 1496
+ + r++v++ g+
MMSYN1_0010 478 IALAdRIVVINDGK 491
43322444444443 PP
>> TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.2 0.4 4.7e-10 3.6e-08 450 640 .. 8 209 .. 3 217 .. 0.72
2 ? 2.2 0.0 0.15 11 469 512 .. 285 329 .. 244 335 .. 0.85
Alignments for each domain:
== domain 1 score: 30.2 bits; conditional E-value: 4.7e-10
TIGR00954 450 dngikfeniplvtPegdvlie.eLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPY.mslgtlRd..qiiYPdsse 543
d i ++ni + +g ++ + +++++vk+G ++G nG GKs l+ il +l+ +g+ ++ ++++ P + ++ g + + +++ +++
MMSYN1_0010 8 DYAIEMQNITKMFLNGAIVANdDITIKVKKGDIHALVGENGAGKSTLMSILFGLYQPTSGTIKVNGKEEVISNPIKANkLGIGMVHQhfKLVEVNTVL 105
678999999999999999986369********9999******************97777777777777777777665325555443311244444455 PP
TIGR00954 544 dfkerglsdkdLeqiLeevkLe....dllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdkl...yelakevgitll 634
+ + g+++ + + +L++ k+ d++++ + + + +s G +qR+ + +++y k v DE t+ ++++ + l ++++++g t++
MMSYN1_0010 106 ENIILGVEQTKSNIFLNKTKMRseliDIMNKYDLYVDLDAKIQDISVGLQQRVEILKVLYRKADILVFDEPTAVLTPQQIQSLlqiMKNLQKAGKTII 203
555456666666556665554310004444443344444455679******************************99888865111567778899999 PP
TIGR00954 635 svshrk 640
+sh+
MMSYN1_0010 204 FISHKM 209
999985 PP
== domain 2 score: 2.2 bits; conditional E-value: 0.15
TIGR00954 469 ieeLsfevksGnhlLiiGPnGcGKsslfRilgel.WPvygglltk 512
+e +++v+ G+ + + G G G+ l +++l Pv gg +k
MMSYN1_0010 285 LETFNIKVRPGEIVAVAGVEGNGQRELIQAITGLvKPVSGGIVYK 329
577899*****************9998777766527999999887 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (538 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 479 (0.106729); expected 89.8 (0.02)
Passed bias filter: 175 (0.0389929); expected 89.8 (0.02)
Passed Vit filter: 75 (0.0167112); expected 4.5 (0.001)
Passed Fwd filter: 59 (0.0131462); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 59 [number of targets reported over threshold]
# CPU time: 1.00u 0.21s 00:00:01.21 Elapsed: 00:00:00.44
# Mc/sec: 1755.89
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0010 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0011 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0011.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0011/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0011 [L=548]
Description: rnsB 3=Putative Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (548 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 204 (0.0454545); expected 89.8 (0.02)
Passed bias filter: 67 (0.0149287); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 3577.05
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0011 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0012 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0012.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0012/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0012 [L=509]
Description: metRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.7e-156 518.2 23.2 1.2e-153 510.6 23.2 2.0 1 TIGR00398 metG: methionine--tRNA ligase
6e-37 125.1 12.4 6.3e-28 95.3 2.5 2.0 2 TIGR00396 leuS_bact: leucine--tRNA ligase
9.6e-36 121.0 11.5 2.5e-18 63.4 4.8 2.9 2 TIGR00422 valS: valine--tRNA ligase
1.5e-27 94.1 10.2 2.2e-15 53.9 3.0 3.9 3 TIGR00392 ileS: isoleucine--tRNA ligase
1.3e-16 57.8 9.6 4.4e-07 26.2 0.5 3.3 3 TIGR00395 leuS_arch: leucine--tRNA ligase
1.9e-15 54.8 12.0 9.5e-09 32.8 0.8 2.1 2 TIGR00435 cysS: cysteine--tRNA ligase
0.00088 15.7 6.3 0.051 9.8 0.3 3.2 3 TIGR00456 argS: arginine--tRNA ligase
Domain annotation for each model (and alignments):
>> TIGR00398 metG: methionine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 510.6 23.2 1.8e-156 1.2e-153 1 529 [. 5 507 .. 5 508 .. 0.96
Alignments for each domain:
== domain 1 score: 510.6 bits; conditional E-value: 1.8e-156
TIGR00398 1 ilvTtalyYangkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAesegltPkelvdklaeefkklfkllnisfdrFirTtdeehke 98
+++Tt++yY++g +HlGh++tt laD+l ryk+ +G+e++f+tg+DehG+kie kA++ +ltP e+ + +++fk+l+ lni++d+FirTtd+ h++
MMSYN1_0012 5 FYITTPIYYPSGNLHLGHAYTTTLADILNRYKKEQGYETFFLTGSDEHGQKIENKAKEANLTPLEYLNPKVQAFKDLWTKLNINYDKFIRTTDDYHEK 102
69************************************************************************************************ PP
TIGR00398 99 ivqkifekllenGyiyekeikglYcvecesflpdryvegecpkckeedargdqcekcgrllePlelieprcvvskakpelkeeehyFfrlskfekkle 196
vqkif+ lle+Gyiy+++++g+Ycv+ce+fl++ +++e + c++s++kp+l +e+ yF+++s+f++ ++
MMSYN1_0012 103 AVQKIFTILLEKGYIYKGQYEGIYCVSCEEFLTNE-------QIDE---------------------NGLCKISNTKPQLVNEDTYFLKVSQFQEFVQ 172
********************************998.......2222.....................23588999*********************** PP
TIGR00398 197 elikknpeskklasevknvlenflkegLkdlaitRdlvewGipvPkdpnkvvYVWldAligYisalseeknatekfkkywkekedaelihliGkdivr 294
+++k +++ ++++++++l+nf++ gLkdl++tR +++wGip+ +d+ +++YVWldAl +Yi+al++ ++++ fkk+w+++ d e+++l Gk+i+r
MMSYN1_0012 173 NVLK--SDFLIPEYRRNEMLKNFVEPGLKDLSVTRVSFKWGIPITEDQRHIIYVWLDALSNYITALGYLQEDDSLFKKFWQND-DCEILQLAGKEIIR 267
****..89************************************************************************998.************** PP
TIGR00398 295 fHtiywPamllalelklpkqlvahgyltvegkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlg 392
fH+iywP ml+al+lk p++l+ hg+++ ++ kmSkS+gnv+dp ++++ y+ad+lR+y+++ +p ekD++fsle f+e Na l+n++gNl++Rt +
MMSYN1_0012 268 FHSIYWPVMLEALNLKQPTHLLGHGWILNKNTKMSKSLGNVIDPVKIIELYSADALRFYIANDLPTEKDGNFSLELFIESFNAHLANNVGNLISRTHN 365
************************************************************************************************** PP
TIGR00398 393 fikkyfegklksvkeaseedekllkkieealekidealekfefkkaleeilklvsegnklideekPwelakee..ekekellavllelirvlsillkp 488
+i kyf+g ++ +++ ++d++l++ ++++++ ++++++ ++ ++++l+l+++ nk+i+ ++Pw+l+ke+ e+ k++la+l + i ++s+llkp
MMSYN1_0012 366 MISKYFNGYINLSNV--NYDQELINLGIKTIDNYVFNMDQYKISESIKAVLELSNACNKYIETKAPWNLEKENkiEELKTVLATLQRNIAIISYLLKP 461
*************99..89*****************************************************999999999***************** PP
TIGR00398 489 ilpklsekilkllnleleadkl.....lkklekkklekaeklfkkl 529
+l+ + + + ++ +le ++++ +++ + +kl++ + +f+++
MMSYN1_0012 462 VLVDSYKDMIEQSGLENVQIDFenlksFSNIKFNKLNNKKVIFNRI 507
*********9998888776666666767788889999999999998 PP
>> TIGR00396 leuS_bact: leucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 95.3 2.5 9.8e-31 6.3e-28 28 205 .. 2 176 .. 1 195 [. 0.94
2 ! 35.4 2.4 1.3e-12 8.1e-10 601 761 .. 296 466 .. 281 501 .. 0.77
Alignments for each domain:
== domain 1 score: 95.3 bits; conditional E-value: 9.8e-31
TIGR00396 28 kkkyYiLsmfPYPsgalHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaiergtaPakwteeniakmkkqlqalgfsydwdrelattd 125
+kk+Yi + + YPsg+lHlGH + t++D+l+Ryk+ +gy+ G D G en a e + +P ++ + ++ +k+ ++l ++yd + ++ttd
MMSYN1_0012 2 SKKFYITTPIYYPSGNLHLGHAYTTTLADILNRYKKEQGYETFFLTGSDEHGQKIENKAKEANLTPLEYLNPKVQAFKDLWTKLNINYD--KFIRTTD 97
589*******************************************************************************9988776..68***** PP
TIGR00396 126 peYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevidsdGrseRgdasvekkelkqwvlkitkyaekLledLe 205
+ + k q+iF+ l ekg +yk + e +c + + L ne++ d +G ++ ++++ + + ++lk+ ++ e + + L+
MMSYN1_0012 98 DYHEKAVQKIFTILLEKGYIYKGQYEGIYCVSCEEFLTNEQI-DENGLCKISNTKPQLVNEDTYFLKVSQFQEFVQNVLK 176
******************************************.9***********999999**********998887765 PP
== domain 2 score: 35.4 bits; conditional E-value: 1.3e-12
TIGR00396 601 vslekmskskkngidPqeivkkyGaDalRlyilFasPieksleWd.esgleGaeRfl.drvynlvkeilsekea..ktelkeealeeaekelrrevhk 694
+ +kmsks +n+idP +i++ y aDalR yi P ek+ +++ e +e + +l + v nl++ +++ ++ + +++ ++++ ++el++ k
MMSYN1_0012 296 NKNTKMSKSLGNVIDPVKIIELYSADALRFYIANDLPTEKDGNFSlELFIESFNAHLaNNVGNLISRTHNMISKyfNGYINLSNVN-YDQELINLGIK 392
5679***************************************9835578888887745788888775554443324445554444.45666666778 PP
TIGR00396 695 alkkvtedlekkeslntviselmkllnallkakk........eelllealkalvtvlspiaPhlaeelaeklgee 761
++ + + ++++ + + i ++++l na k+ + +e+ +e lk+++ l+ + +++ l+ l +
MMSYN1_0012 393 TIDNYVFNMDQYK-ISESIKAVLELSNACNKYIEtkapwnleKENKIEELKTVLATLQRNIAIISYLLKPVLVDS 466
8899888898888.999***********99988777899885488999999999999998888888887766543 PP
>> TIGR00422 valS: valine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 58.9 0.5 8.9e-20 5.7e-17 33 188 .. 3 140 .. 1 158 [. 0.88
2 ! 63.4 4.8 3.9e-21 2.5e-18 452 701 .. 223 473 .. 207 507 .. 0.75
Alignments for each domain:
== domain 1 score: 58.9 bits; conditional E-value: 8.9e-20
TIGR00422 33 esfiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkklkaegktkedlgreefvekilewkeesgetikeqlkr 130
++f i++P ++ G lH+GHa++++l Dil Ryk+ +g+++ fl+G D +g +++E+k+k+ + le+ + + ++ k+ + +
MMSYN1_0012 3 KKFYITTPIYYPSGNLHLGHAYTTTLADILNRYKKEQGYETFFLTGSDEHG----QKIENKAKEAN------------LTPLEYLNPKVQAFKDLWTK 84
78************************************************9....56666666653............23467777788888899999 PP
TIGR00422 131 LGvsldwsrerfTldeelskavkeaFvrlyeeglIyrgkrlvnwdpkletaisdlEve 188
L +++++ T d+ kav++ F l e+g Iy+g++ +++ +e +++ ++
MMSYN1_0012 85 LN--INYDKFIRTTDDYHEKAVQKIFTILLEKGYIYKGQYEGIYCVSCEEFLTNEQID 140
85..78999999*************************************999988876 PP
== domain 2 score: 63.4 bits; conditional E-value: 3.9e-21
TIGR00422 452 DTWfsSslwplstlgWpeek.kdlkkfypts....llvtgfDIiffWvarmillslaltgqvPfkevlihglvrdeqgrKmSKSlgNvidPldlieky 544
W++ + lg+ +e+ + +kkf+ ++ l g +Ii+f ++ ++ al + P ++l hg + + ++ KmSKSlgNvidP+++ie y
MMSYN1_0012 223 YVWLDALSNYITALGYLQEDdSLFKKFWQNDdceiLQLAGKEIIRFHSIYWPVMLEALNLKQPT-HLLGHGWILN-KNTKMSKSLGNVIDPVKIIELY 318
568887777777889988885778999988655545679***********99999999999995.6899****97.578******************* PP
TIGR00422 545 GaDalRftlaalvaaGrDinldlkkvea..arkFlnKlwn.asrfvlmnledk.keleegeeklsladrwilsklnelikevrealdkyrfaeaakal 638
aDalRf++a+ + +D n++l+ + + +++ +n + n +sr m ++ + + ++ d+ + + ++i ++ ++d+y+ +e++ka+
MMSYN1_0012 319 SADALRFYIANDLPTEKDGNFSLELFIEsfNAHLANNVGNlISRTHNMI-SKYfNGYI--NLSNVNYDQELINLGIKTIDNYVFNMDQYKISESIKAV 413
**********************998754114556777777444443333.33322222..222333444444444578999999************** PP
TIGR00422 639 yeFiWndfcdwyiElvKkelyeeeeeekkeakstlaivLdkllrllhpfiPflteeiyqklke 701
e ++ c++yiE+ + + e+e++ +e+k++la++ ++ + + P l ++ + +++
MMSYN1_0012 414 LEL--SNACNKYIETKAPWN-LEKENKIEELKTVLATLQRNIAIISYLLKPVLVDSYKDMIEQ 473
**9..9********755544.555577777777777776666666666677777765555554 PP
>> TIGR00392 ileS: isoleucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.0 0.4 1e-13 6.7e-11 46 195 .. 13 143 .. 2 155 .. 0.80
2 ? 1.1 0.0 0.031 20 422 476 .. 158 215 .. 149 218 .. 0.83
3 ! 53.9 3.0 3.4e-18 2.2e-15 597 749 .. 287 433 .. 217 506 .. 0.65
Alignments for each domain:
== domain 1 score: 39.0 bits; conditional E-value: 1e-13
TIGR00392 46 yanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekklgiekkeeiesleveefrekcrefalkaieeqkeqfqrlgvlvDfek 143
y +G++hlgha +l Di++ryk+ qG+++ + G D HG iE k ++ +++++le + ++++ k+ +l + ++k
MMSYN1_0012 13 YPSGNLHLGHAYTTTLADILNRYKKEQGYETFFLTGSDEHGQKIENKAKE-------ANLTPLE----------YLNPKVQAFKDLWTKLNIN--YDK 91
779**************************************888876543.......3455544..........3333444445555555554..456 PP
TIGR00392 144 pYltldkeyeesvlellkelaekgllkrdlkvvywspeletaLaeaEveyke 195
t d e++v +++ l ekg+++++ +++++e L + ++++
MMSYN1_0012 92 FIRTTDDYHEKAVQKIFTILLEKGYIYKGQYEGIYCVSCEEFLTNEQIDENG 143
667888888888999*****************************99998765 PP
== domain 2 score: 1.1 bits; conditional E-value: 0.031
TIGR00392 422 eqwFikvkeikeelleeikkvkwvpekg.ekRlkkmle.nrkdWciSR.qRyWGvPip 476
+ +F+kv++++e + + +k +pe ++ lk+++e kd + R + +WG+Pi
MMSYN1_0012 158 DTYFLKVSQFQEFVQNVLKSDFLIPEYRrNEMLKNFVEpGLKDLSVTRvSFKWGIPIT 215
689*******9877776666667999998999*****94589******4458****95 PP
== domain 3 score: 53.9 bits; conditional E-value: 3.4e-18
TIGR00392 597 kvithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvass.dpaedlkfseeil.........kevaekllkilnntlrFlllyanLdkfkpe 684
+++ hG++l+++ KMSKslgNv+dp k+i+ y aD+lR+y+a+ +d +fs e++ ++v + + ++ n +++ y nL++++ +
MMSYN1_0012 287 HLLGHGWILNKN-TKMSKSLGNVIDPVKIIELYSADALRFYIANDlPTEKDGNFSLELFiesfnahlaNNVGNLISRTHNMISKYFNGYINLSNVNYD 383
5789*****987.8*******************************76677877776654111111111445555555555555555556666655555 PP
TIGR00392 685 ekslkveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLsnwYlriskdrlya 749
++ +++ +++++ ++++y++++ ++a+ + + n Y++ +
MMSYN1_0012 384 QE-------------LINLGIKTIDNYVFNMDQYKISESIKAVLELSNA--CNKYIETKAPWNLE 433
44.............4444444444444455555555555555533322..44455543332222 PP
>> TIGR00395 leuS_arch: leucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.8 0.2 1.9e-09 1.2e-06 25 70 .. 3 48 .. 1 64 [. 0.90
2 ! 11.9 0.3 1.5e-05 0.0096 118 184 .. 69 136 .. 63 163 .. 0.84
3 ! 26.2 0.5 6.9e-10 4.4e-07 578 742 .. 260 427 .. 231 496 .. 0.72
Alignments for each domain:
== domain 1 score: 24.8 bits; conditional E-value: 1.9e-09
TIGR00395 25 ekffltvayPylnGvlhaGhlrtftivevvarfermkgknvLfplg 70
kf++t + y++G+lh Gh++t t +++ r+++ +g++ +f g
MMSYN1_0012 3 KKFYITTPIYYPSGNLHLGHAYTTTLADILNRYKKEQGYETFFLTG 48
69**************************************999776 PP
== domain 2 score: 11.9 bits; conditional E-value: 1.5e-05
TIGR00395 118 eyfsreaesalkslGy..sidWrrefkttdevydrfieWqlrkLkelGlikkGehpvrycpkdenpved 184
ey+ +++ +a+k+l +i++ + +ttd+++++ ++ ++ L e+G i kG+ +yc +e+ ++
MMSYN1_0012 69 EYLNPKV-QAFKDLWTklNINYDKFIRTTDDYHEKAVQKIFTILLEKGYIYKGQYEGIYCVSCEEFLTN 136
6666665.567777541157888999*************************************986655 PP
== domain 3 score: 26.2 bits; conditional E-value: 6.9e-10
TIGR00395 578 isakdLipnhLtfyifthvaifPeefWPrgivvnGyvllegkklskskGnlltlkeavekfGadvarlylldaaelvedadfkese.veaakkrler. 673
+++k++i h +++ a+ + P + +G++l ++ k+sks Gn++ +++e + ad+ r+y+++ +++d +f + +e+ + +l +
MMSYN1_0012 260 LAGKEIIRFHSIYWPVMLEALNL--KQPTHLLGHGWILNKNTKMSKSLGNVIDPVKIIELYSADALRFYIANDLPTEKDGNFSLELfIESFNAHLANn 355
56666666666666666666643..458888889999999*****************************************98553134444444321 PP
TIGR00395 674 ...l.kefaeeiakksdlevgeelsfldrwllsrlnkaikevkealenlelrkavkaalfelkkdvdyyrrrs 742
l + + i+k ++ + d+ l++ k+i ++ +++++++ +++ +a+ el ++ + y +
MMSYN1_0012 356 vgnLiSRTHNMISKYFNGYINLSNVNYDQELINLGIKTIDNYVFNMDQYKISESI-KAVLELSNACNKYIETK 427
1113133344455666677776677778888888888888888889999888888.45668888887777653 PP
>> TIGR00435 cysS: cysteine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.8 0.8 1.5e-11 9.5e-09 34 156 .. 17 141 .. 3 175 .. 0.80
2 ! 26.7 4.5 1e-09 6.5e-07 252 453 .. 287 503 .. 268 508 .. 0.72
Alignments for each domain:
== domain 1 score: 32.8 bits; conditional E-value: 1.5e-11
TIGR00435 34 asHlGhaRtlvvfDvlrrilqylgYdvqyvqNiTDidDKiikrAreeelteeevserfieayledleaLnvlkpdlelrvsekide.iielvekliek 130
++HlGha t+ D+l+r+ + gY+ + + Ki ++A+e +lt e + ++a+++ ++Ln+ + ++ ++ ++ + ++ l+ek
MMSYN1_0012 17 NLHLGHAYTTTLADILNRYKKEQGYETFFLTGSDEHGQKIENKAKEANLTPLEYLNPKVQAFKDLWTKLNINYDKFIRTTDDYHEKaVQKIFTILLEK 114
68***********************************************************************9976666666655266777899*** PP
TIGR00435 131 gyaYvssdgdvyf.dvskfkdYgklsk 156
gy Y+ + +y + ++f + ++ +
MMSYN1_0012 115 GYIYKGQYEGIYCvSCEEFLTNEQIDE 141
*****9987777413444444444444 PP
== domain 2 score: 26.7 bits; conditional E-value: 1e-09
TIGR00435 252 yflHngflkiegeKmSKSlgNfitikdllkkfdpralRllllsvh.yrnqldfseelleeak..nalerlakalralkedlasakeiskkksplekef 346
+ l g++ ++ KmSKSlgN+i +++ +++ alR+++++ ++ +fs el e+ + +++ + ++++++ +++ + + s + ++
MMSYN1_0012 287 HLLGHGWILNKNTKMSKSLGNVIDPVKIIELYSADALRFYIANDLpTEKDGNFSLELFIESFnaHLANNVGNLISRTHNMISKYFNGYINLS--NVNY 382
56667899999****************************9998651677899**99987776233357777777777777775544444444..4677 PP
TIGR00435 347 eaefvE..........aldddlntaealavlselvkksnlkeiskakaalli.eelialesvlekllglpsksvqagsnddelgeledliee...rse 430
++e+ + d+++++e+++++ el + n + ++ka +l + +++ +l++vl++l + + + ++ + +++ +d+ie+ +
MMSYN1_0012 383 DQELINlgiktidnyvFNMDQYKISESIKAVLELSNACNKYIETKAPWNLEKeNKIEELKTVLATL-QRNIAIISYLLKPVLVDSYKDMIEQsglENV 479
77777777777887753457899****************666666666654414566777777766.5555566777777777888888887443334 PP
TIGR00435 431 arkkkelkkaDkiR.dellkkgiv 453
+ ++lk +i+ ++l++k+++
MMSYN1_0012 480 QIDFENLKSFSNIKfNKLNNKKVI 503
444455677777777777777776 PP
>> TIGR00456 argS: arginine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.4 0.0 0.00044 0.28 123 152 .. 14 43 .. 13 47 .. 0.94
2 ! 9.8 0.3 8e-05 0.051 237 294 .. 74 134 .. 49 142 .. 0.84
3 ? -1.3 0.3 0.18 1.2e+02 227 287 .. 368 430 .. 332 451 .. 0.68
Alignments for each domain:
== domain 1 score: 7.4 bits; conditional E-value: 0.00044
TIGR00456 123 pakplHvGHlRsaiiGdslarileflGydv 152
p ++lH+GH+ + + d+l+r + Gy++
MMSYN1_0012 14 PSGNLHLGHAYTTTLADILNRYKKEQGYET 43
689*************************97 PP
== domain 2 score: 9.8 bits; conditional E-value: 8e-05
TIGR00456 237 aleeiketlkrlnvkfdefkvesesvkngklkkvledLkekglveed...galvldltefg 294
++ +k+ +ln+++d+f ++ + ++ ++k+++ L ekg++++ g +++ +ef
MMSYN1_0012 74 KVQAFKDLWTKLNINYDKFIRTTDDYHEKAVQKIFTILLEKGYIYKGqyeGIYCVSCEEFL 134
5688999999*********************************998434589999999985 PP
== domain 3 score: -1.3 bits; conditional E-value: 0.18
TIGR00456 227 iklwkrlvelaleeiketlkrlnvk.fdefkvesesvkngklkkvledLk.ekglveedgalv 287
k ++ ++l+ ++ ++l +l +k +d++++ + +k ++ k++ +L + +++ e a +
MMSYN1_0012 368 SKYFNGYINLSNVNYDQELINLGIKtIDNYVFNMDQYKISESIKAVLELSnACNKYIETKAPW 430
456666677777777888888888537888888888888888888888874444444545444 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (509 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 245 (0.05459); expected 89.8 (0.02)
Passed bias filter: 125 (0.027852); expected 89.8 (0.02)
Passed Vit filter: 18 (0.0040107); expected 4.5 (0.001)
Passed Fwd filter: 7 (0.00155971); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.26
# Mc/sec: 2811.33
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0012 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0025 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0025.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0025/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0025 [L=75]
Description: rpsR 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.9e-32 107.1 1.4 1e-31 106.9 1.4 1.0 1 TIGR00165 S18: ribosomal protein bS18
Domain annotation for each model (and alignments):
>> TIGR00165 S18: ribosomal protein bS18
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 106.9 1.4 2.3e-35 1e-31 2 68 .. 7 73 .. 6 75 .] 0.97
Alignments for each domain:
== domain 1 score: 106.9 bits; conditional E-value: 2.3e-35
TIGR00165 2 krrkklcrfteekikeiDYkDlellkkfisergKilPrRiTGtsakyqrklakaiKRaRylaLlPfv 68
k+rkk+ f +++ik iDYkD+ellkkfis++g+ilPrRiTGts k qr+la aiKRaR++aLlP+v
MMSYN1_0025 7 KKRKKVNFFQKNNIKYIDYKDIELLKKFISPNGQILPRRITGTSPKDQRQLALAIKRARQMALLPYV 73
6899999999********************************************************9 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (75 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 201 (0.0447861); expected 89.8 (0.02)
Passed bias filter: 136 (0.030303); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 598.35
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0025 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0026 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0026.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0026/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0026 [L=146]
Description: priB 4=Probable DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.4e-27 93.4 0.1 5.1e-27 93.2 0.1 1.0 1 TIGR00621 ssb: single-stranded DNA-binding protein
------ inclusion threshold ------
0.051 12.0 0.0 0.24 9.9 0.0 1.9 2 TIGR03853 matur_matur: putative metal-binding protein
Domain annotation for each model (and alignments):
>> TIGR00621 ssb: single-stranded DNA-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 93.2 0.1 2.3e-30 5.1e-27 5 140 .. 1 127 [. 1 141 [. 0.84
Alignments for each domain:
== domain 1 score: 93.2 bits; conditional E-value: 2.3e-30
TIGR00621 5 vnkViLvGrlgrDpelryvpsgnavanftlAtnerwkdqdGevkeetewhrivvfrrlaevaaeylkKGskvlveGkLktrkwedqngqkrskteiia 102
+n+V LvGr++rD elr +++g+ + ft+A++e + + e+t+++ +++f ++ae++ +yl+KGs + veG+++tr+ ++ +g+ + +++ a
MMSYN1_0026 1 MNRVNLVGRITRDLELRVAKNGSKFVFFTVAVSEFSTRE-----EKTNYIPCSAFDKTAENMVKYLSKGSLISVEGRITTRNNQTPDGKFETIVNVLA 93
6********************************976544.....69**************************************************** PP
TIGR00621 103 dnlqlldlsakaqggekelneesgesqqqapqesqqea 140
+ +++l+ s++++++ +e ++++ + ++p++ q++
MMSYN1_0026 94 ERVNFLEPSKNRNNMTTE---QNDNFTPNQPTQ-QNSD 127
**9999999666655544...344445666666.2333 PP
>> TIGR03853 matur_matur: putative metal-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.7 0.0 0.44 9.8e+02 29 46 .. 19 36 .. 11 39 .. 0.73
2 ? 9.9 0.0 0.00011 0.24 34 72 .. 41 78 .. 38 81 .. 0.87
Alignments for each domain:
== domain 1 score: -1.7 bits; conditional E-value: 0.44
TIGR03853 29 ekFGeearFhtCsaedld 46
+k G++ F+t ++++
MMSYN1_0026 19 AKNGSKFVFFTVAVSEFS 36
456899999998888776 PP
== domain 2 score: 9.9 bits; conditional E-value: 0.00011
TIGR03853 34 earFhtCsaedldadeLiefLlkkgKfieseegltvnae 72
++ + Csa d +a++++++L kg +i+ e+ +t++++
MMSYN1_0026 41 KTNYIPCSAFDKTAENMVKYLS-KGSLISVEGRITTRNN 78
678999**************95.8999999999998876 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (146 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 129 (0.0287433); expected 89.8 (0.02)
Passed bias filter: 87 (0.019385); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1103.49
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0026 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0027 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0027.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0027/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0027 [L=137]
Description: rpsF 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.1e-20 69.8 1.4 4.1e-20 69.8 1.4 1.8 2 TIGR00166 S6: ribosomal protein bS6
Domain annotation for each model (and alignments):
>> TIGR00166 S6: ribosomal protein bS6
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.8 1.4 9.1e-24 4.1e-20 1 94 [. 2 92 .. 2 93 .. 0.97
2 ? -0.1 0.4 0.06 2.7e+02 12 39 .. 108 135 .. 94 137 .] 0.56
Alignments for each domain:
== domain 1 score: 69.8 bits; conditional E-value: 9.1e-24
TIGR00166 1 mrkYeiiflvrptlseeevkeeieeykklltknkaeevksedlGkreLaypikkqarayYvlmnfeseaavikelertlkindnvlRsliikle 94
++kYe++++++ + ++ ke +++ ++ +++++ +s+dlG+ y+i+ ++++Y ++ +e+ ++ike+er +ki++nv+R l++++e
MMSYN1_0027 2 IKKYEVMYILDQDVKDT--KELVTKLD-AILAENGKILESNDLGLLDFTYEINHKKKGFYHVVIVEATTQAIKEFERIAKIDKNVVRTLVLNTE 92
689**********9999..******99.999999*********************************************************997 PP
== domain 2 score: -0.1 bits; conditional E-value: 0.06
TIGR00166 12 ptlseeevkeeieeykklltknkaeevk 39
t+ eee+ e+ + k +++ ++a +++
MMSYN1_0027 108 MTKYEEEQREKKNFRKPFIKREEAAVKE 135
3445555777777777777777776665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (137 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 333 (0.0741979); expected 89.8 (0.02)
Passed bias filter: 75 (0.0167112); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1035.46
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0027 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0029 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0029.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0029/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0029 [L=199]
Description: FMN-dependent NADH-azoreductase 1 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.00015 19.6 0.1 0.00024 18.9 0.1 1.3 1 TIGR03566 FMN_reduc_MsuE: FMN reductase
0.0018 16.2 0.0 0.0026 15.7 0.0 1.3 1 TIGR03567 FMN_reduc_SsuE: FMN reductase
Domain annotation for each model (and alignments):
>> TIGR03566 FMN_reduc_MsuE: FMN reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.9 0.1 1.1e-07 0.00024 12 96 .. 16 105 .. 5 109 .. 0.74
Alignments for each domain:
== domain 1 score: 18.9 bits; conditional E-value: 1.1e-07
TIGR03566 12 Psrtlalveavvaelaarlg.leakvidla..dlaaslgaalarse..lseeleaaleaiesaDvlvvasPvyrgsytGlfkhlfDlvdq 96
s + al+++ ++e ++ + e ++dl+ ++++s+ ++ + s ++e +++ ++ ++s D lv+a P+y s + +k ++D+v
MMSYN1_0029 16 VSNSVALTNRFLEEYKKFNPdDEIIIVDLNkdEVGTSILTSETFSTfyQQEVTKKYINLLKSVDKLVIACPMYNFSTPVTLKSFIDHVSV 105
577777777777777776652334455664226888888887766511344678899******************************975 PP
>> TIGR03567 FMN_reduc_SsuE: FMN reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.7 0.0 1.1e-06 0.0026 49 90 .. 61 102 .. 17 111 .. 0.86
Alignments for each domain:
== domain 1 score: 15.7 bits; conditional E-value: 1.1e-06
TIGR03567 49 akfdspavkeltakvakAdgvvvatPvYkasysGvLkallDl 90
+ ++++ k+ ++ +++ d +v+a P+Y s Lk+++D
MMSYN1_0029 61 TFYQQEVTKKYINLLKSVDKLVIACPMYNFSTPVTLKSFIDH 102
4466777789999***************************95 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (199 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 189 (0.0421123); expected 89.8 (0.02)
Passed bias filter: 135 (0.0300802); expected 89.8 (0.02)
Passed Vit filter: 17 (0.00378788); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1428.86
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0029 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0030 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0030.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0030/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0030 [L=344]
Description: ABC transporter, ATP-binding protein 2=Generic Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-63 212.6 0.4 1.7e-63 212.1 0.4 1.2 1 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
1.6e-62 208.9 1.2 2.2e-62 208.4 1.2 1.2 1 TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-bi
6.9e-57 190.2 1.9 1.2e-56 189.4 1.9 1.4 1 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
1.3e-55 186.3 0.5 1.7e-55 186.0 0.5 1.1 1 TIGR02673 FtsE: cell division ATP-binding protein FtsE
6.1e-51 171.7 0.1 8.2e-51 171.2 0.1 1.1 1 TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transp
6.9e-48 161.1 1.5 4.8e-47 158.4 1.5 2.0 1 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
1.1e-46 157.2 0.1 1.6e-46 156.7 0.1 1.1 1 TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding pr
2.2e-44 150.0 0.3 2.2e-44 150.0 0.3 1.8 2 TIGR01186 proV: glycine betaine/L-proline transport ATP bind
2.2e-43 146.5 0.4 2.8e-43 146.2 0.4 1.1 1 TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-bindin
3.8e-43 145.8 1.4 5.2e-43 145.3 1.4 1.2 1 TIGR04520 ECF_ATPase_1: energy-coupling factor transporter A
1.6e-41 140.2 1.3 2.5e-41 139.6 1.3 1.2 1 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
5.3e-41 139.0 0.0 7.3e-41 138.5 0.0 1.1 1 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
1.3e-39 134.0 0.7 2.5e-39 133.1 0.7 1.4 1 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
9.2e-38 127.8 0.1 1.4e-37 127.2 0.1 1.3 1 TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transport
2.2e-37 126.9 0.9 3.8e-37 126.2 0.4 1.6 2 TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP
3e-37 126.3 0.1 4.8e-37 125.7 0.1 1.2 1 TIGR01187 potA: polyamine ABC transporter, ATP-binding prote
3.6e-37 126.0 0.1 4.8e-37 125.6 0.1 1.1 1 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
4.4e-37 126.0 0.1 7.1e-37 125.3 0.1 1.3 1 TIGR02769 nickel_nikE: nickel import ATP-binding protein Nik
3.6e-36 122.9 0.0 4.8e-36 122.5 0.0 1.1 1 TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system
7.3e-36 122.1 0.0 9e-36 121.8 0.0 1.1 1 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
7.4e-36 121.8 0.2 1.2e-35 121.1 0.2 1.3 1 TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding protei
1.2e-34 117.9 0.0 2e-34 117.1 0.0 1.2 1 TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-bindi
6.6e-34 115.3 0.3 1.1e-33 114.6 0.3 1.3 1 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
2.4e-33 113.3 2.2 3.2e-33 112.9 1.8 1.4 1 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
1.2e-32 111.2 0.1 1.6e-32 110.8 0.1 1.1 1 TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit,
2.8e-31 106.4 0.1 4.5e-31 105.8 0.1 1.3 1 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
5.8e-31 105.6 0.1 8.4e-31 105.1 0.1 1.1 1 TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC trans
1.9e-30 103.8 1.2 2e-18 64.2 0.2 2.1 2 TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system
2.9e-30 103.3 0.0 3.7e-30 103.0 0.0 1.1 1 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
7.4e-30 101.9 0.3 1e-29 101.5 0.3 1.1 1 TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
3.4e-29 99.8 0.1 5e-29 99.3 0.1 1.2 1 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
8.1e-29 98.3 0.3 1.2e-28 97.7 0.3 1.1 1 TIGR00958 3a01208: antigen peptide transporter 2
6e-28 96.1 1.1 1.9e-27 94.4 1.1 1.7 1 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
7.2e-28 95.3 0.1 1.1e-27 94.7 0.1 1.2 1 TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding p
8.3e-28 95.5 2.5 1.3e-27 94.9 2.5 1.2 1 TIGR03740 galliderm_ABC: lantibiotic protection ABC transpor
8.5e-28 94.9 0.1 1.1e-27 94.5 0.1 1.1 1 TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC trans
2.2e-27 93.6 0.3 3.4e-27 93.0 0.3 1.3 1 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
3.8e-27 93.2 0.1 4.9e-27 92.8 0.1 1.1 1 TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein
2e-26 90.8 0.0 3.3e-26 90.1 0.0 1.2 1 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
2.8e-26 90.2 0.0 4.3e-26 89.7 0.0 1.2 1 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
3.1e-26 90.1 1.4 3.1e-26 90.1 1.4 1.4 1 TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-bi
1e-25 88.4 0.2 1.3e-25 88.0 0.2 1.1 1 TIGR00955 3a01204: pigment precursor permease
7.6e-25 85.5 0.1 1.4e-24 84.6 0.1 1.3 1 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
1.1e-24 85.4 1.0 2.1e-24 84.5 1.0 1.4 1 TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC tran
3.7e-23 79.9 6.0 4.7e-23 79.5 6.0 1.1 1 TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
2.2e-22 77.8 0.0 7.9e-22 76.0 0.0 1.8 1 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
1.1e-21 75.0 0.9 1.7e-11 41.4 0.0 2.2 2 TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD f
4.1e-20 69.8 0.2 5.7e-20 69.4 0.2 1.1 1 TIGR01192 chvA: glucan exporter ATP-binding protein
8.2e-19 65.4 0.4 1.1e-18 64.9 0.4 1.1 1 TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protei
2.3e-18 64.5 0.0 2.9e-18 64.2 0.0 1.2 1 TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein
5.6e-18 62.9 0.0 7.5e-18 62.5 0.0 1.1 1 TIGR01288 nodI: nodulation ABC transporter NodI
4.4e-17 59.8 0.1 5.7e-17 59.4 0.1 1.0 1 TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
7.3e-16 56.3 2.3 2.2e-15 54.7 1.9 1.9 1 TIGR01978 sufC: FeS assembly ATPase SufC
2.5e-14 49.1 0.1 3.3e-14 48.7 0.1 1.0 1 TIGR01257 rim_protein: rim ABC transporter
3.7e-13 45.8 0.1 6.9e-13 44.9 0.1 1.4 1 TIGR00957 MRP_assoc_pro: multi drug resistance-associated pr
1.6e-12 43.7 0.4 4.5e-12 42.2 0.1 1.8 2 TIGR01271 CFTR_protein: cystic fibrosis transmembrane conduc
6.2e-12 42.5 0.6 1.3e-07 28.2 0.1 2.3 2 TIGR00630 uvra: excinuclease ABC subunit A
7.2e-12 41.7 0.9 9.4e-12 41.3 0.9 1.1 1 TIGR00956 3a01205: pleiotropic drug resistance family protei
3.2e-09 33.7 0.7 1.6e-07 28.1 0.3 2.4 1 TIGR00954 3a01203: peroxysomal long chain fatty acyl transpo
0.00015 17.7 5.7 0.0019 14.1 0.0 2.7 3 TIGR00618 sbcc: exonuclease SbcC
0.0011 15.2 0.9 0.0042 13.3 0.2 2.0 2 TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer AT
0.0014 16.6 1.6 0.0038 15.2 1.6 1.6 1 TIGR03499 FlhF: flagellar biosynthesis protein FlhF
0.0022 14.8 0.0 0.0031 14.3 0.0 1.3 1 TIGR02814 pfaD_fam: PfaD family protein
0.0034 15.1 0.1 0.023 12.3 0.0 2.3 2 TIGR00041 DTMP_kinase: dTMP kinase
------ inclusion threshold ------
0.016 11.4 0.0 0.023 10.9 0.0 1.2 1 TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
0.021 12.5 0.1 0.039 11.6 0.1 1.5 1 TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-
0.026 11.4 0.0 0.026 11.4 0.0 2.0 3 TIGR00634 recN: DNA repair protein RecN
0.026 10.9 5.8 0.0047 13.4 0.8 2.0 2 TIGR00376 TIGR00376: putative DNA helicase
Domain annotation for each model (and alignments):
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 212.1 0.4 2.6e-65 1.7e-63 1 219 [. 111 326 .. 111 327 .. 0.96
Alignments for each domain:
== domain 1 score: 212.1 bits; conditional E-value: 2.6e-65
TIGR02982 1 vikirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrr.kiGyifqahnllesl 97
+i++++++ y +g+l++ vl+ i++++++ + +++ GpsGsGktt+l++i+gl ++ +G++ vlg++l+ ++++++++ rr ++G++fq++nll+ l
MMSYN1_0030 111 IIELKNVQKSYITGDLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMTKFRRrTVGFVFQQYNLLTNL 208
5899***************************************************************************976269************* PP
TIGR02982 98 taeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgtti 195
ta++n +++ +l++k ++ + +e++e++g++++++++p+++sgGq+qrv+iaral+++P++++adePt ald++ gr+v+e+l k+ +e tt+
MMSYN1_0030 209 TAKENAEVGENLSSK----KNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTV 302
*****9888777665....8889999************************************************************************ PP
TIGR02982 196 llvthdnrildvadrivkmedGkl 219
++vth++ i ++a+ ++++++G +
MMSYN1_0030 303 IVVTHNPNIAKIANTVIHIKNGII 326
*********************987 PP
>> TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 208.4 1.2 3.3e-64 2.2e-62 1 219 [. 111 326 .. 111 328 .. 0.96
Alignments for each domain:
== domain 1 score: 208.4 bits; conditional E-value: 3.3e-64
TIGR02211 1 llkcenltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladf 98
+++ +n++ksy +g+le+ vlkg++++++k++ + i+G sGsGk+t+l +++gldk+++G+v++ G +ls l +++++k+r +++Gf++q + ll+++
MMSYN1_0030 111 IIELKNVQKSYITGDLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMTKFRRRTVGFVFQQYNLLTNL 208
68899********************************************************************************************* PP
TIGR02211 99 talenvamPlliskkskkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntall 196
ta en + +s+k+ + e++e +g++++++k+p ++sGG++qrv+iaral ++P++++adePtg ld++ +k++e+l ++nke++t+++
MMSYN1_0030 209 TAKENAEVGENLSSKK---NGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVI 303
******9987666554...4566789************************************************************************ PP
TIGR02211 197 vvthdlelakkldrvlelkdgkl 219
vvth+ ++ak ++ v+++k+g +
MMSYN1_0030 304 VVTHNPNIAKIANTVIHIKNGII 326
********************977 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 189.4 1.9 1.8e-58 1.2e-56 1 206 [] 114 321 .. 114 321 .. 0.94
Alignments for each domain:
== domain 1 score: 189.4 bits; conditional E-value: 1.8e-58
TIGR03608 1 lkniskkfkdk....eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetve 94
lkn++k++ + +lk +++k++k +++ i+G sGsGK+t+Lni++ l+k ++g+v++ g++ + lk+++ +k++r ++g++Fq+++Ll n t +
MMSYN1_0030 114 LKNVQKSYITGdletPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMTKFRRRTVGFVFQQYNLLTNLTAK 211
57888887654344489********************************************************************************* PP
TIGR03608 95 enlelalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegk.tiiivt 191
en e++ +++s k++ + e+ e++g++ +++k+ +++sgG++qRv++ar+l k++++++ADEPtg+LD++ +vle+l ++++e k t+i+vt
MMSYN1_0030 212 ENAEVG---ENLSSKKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKtTVIVVT 306
****95...677778899999*****************************************************************9997626999** PP
TIGR03608 192 Hdpevaekadrviel 206
H+p++a+ a+ vi++
MMSYN1_0030 307 HNPNIAKIANTVIHI 321
************986 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 186.0 0.5 2.6e-57 1.7e-55 1 213 [. 111 324 .. 111 325 .. 0.91
Alignments for each domain:
== domain 1 score: 186.0 bits; conditional E-value: 2.6e-57
TIGR02673 1 iielekvskeyaa...gveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrk.igvvfqDfkllkdr 94
iiel++v+k+y + ++ +Lk +++k++k++f+ + G+sG+Gktt+l+++ g +k+s+G+v v g++++ l++++++++Rr+ +g vfq ++ll++
MMSYN1_0030 111 IIELKNVQKSYITgdlETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMTKFRRRtVGFVFQQYNLLTNL 208
79*********852225789***********************************************************986549************* PP
TIGR02673 95 tvlenvalalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkr.Gttvi 191
t+ en + +++ k + ++e+ e++g++d+++++p+++sgG qqRv+iaRa+ ++P++l aDePtG lD+e+ +++l++l ++nk+ ttvi
MMSYN1_0030 209 TAKENAEVGENLSSK---KNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEyKTTVI 303
*****9988766554...5567899***************************************************************99752799** PP
TIGR02673 192 vathdeelvervkkrvlelekg 213
v+th+ ++++ +++ v+++++g
MMSYN1_0030 304 VVTHNPNIAK-IANTVIHIKNG 324
******9865.56677887776 PP
>> TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 171.2 0.1 1.2e-52 8.2e-51 4 214 .. 111 327 .. 108 337 .. 0.88
Alignments for each domain:
== domain 1 score: 171.2 bits; conditional E-value: 1.2e-52
TIGR03265 4 ylsieeiekefe....aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlpp......qkrdyGivfqsYaLfPnl 91
+++++++k++ ++ +lk i++++ k++++ +LGPsG Gktt+L ii+GL+k+++G +++ g +++ l ++r G+vfq Y L nl
MMSYN1_0030 111 IIELKNVQKSYItgdlETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDshmtkfRRRTVGFVFQQYNLLTNL 208
67888899988645567889**********************************************999876531112226899************** PP
TIGR03265 92 tvaeniayGLknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvtti 189
t +en ++G + + ++ ++e++e++g++++ +kyP q+sGGqqqrv++arala P++L+ DeP aLD + k+ e l k+ ++ + t i
MMSYN1_0030 209 TAKENAEVGENL---SSKKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVI 303
********9544...34566778*************************************************************************** PP
TIGR03265 190 mvthdqeealslaDrivvmnkgkie 214
+vth+ + a +a+ ++ +++g i
MMSYN1_0030 304 VVTHNPNIA-KIANTVIHIKNGIID 327
*****9877.678888888887775 PP
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 158.4 1.5 7.2e-49 4.8e-47 1 224 [. 111 326 .. 111 341 .. 0.90
Alignments for each domain:
== domain 1 score: 158.4 bits; conditional E-value: 7.2e-49
TIGR02315 1 llevenlskvypng...kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkk.igmifqeynlierl 94
++e++n++k+y +g + +lk ++++++k ++++++G+sG+Gk+t+l i++l + s+g++++ g++++ lk++++ k+r++ +g++fq+ynl+++l
MMSYN1_0030 111 IIELKNVQKSYITGdleTPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMTKFRRRtVGFVFQQYNLLTNL 208
699********876222579*****************************************************999999876527************9 PP
TIGR02315 95 tvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrin 192
t+ en +g +l s+++ + e+ e +g++++ +k q+sGGqqqRv+iaRala++p++++aDEP+ +LD++ ++v+++l ++n
MMSYN1_0030 209 TAKENAEVGE-----------NLSSKKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVN 295
9999976553...........2335566677778999************************************************************* PP
TIGR02315 193 kekgitvivnlHqvdlakkyadrivglkagei 224
ke + tviv H+ ++ak a+ ++ +k+g i
MMSYN1_0030 296 KEYKTTVIVVTHNPNIAK-IANTVIHIKNGII 326
****************96.7999*****9976 PP
>> TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 156.7 0.1 2.4e-48 1.6e-46 1 214 [. 112 331 .. 112 341 .. 0.89
Alignments for each domain:
== domain 1 score: 156.7 bits; conditional E-value: 2.4e-48
TIGR00968 1 ilianvskrf..Gd..fqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleG......rdvtrvkvrdreiGfvfqhyalfkhlt 88
i+++nv+k++ Gd + +l+ +d+++++ +++ +lGpsGsGk+t+l +i+Gl+k +G +++ G +d +k r+r +Gfvfq+y l+ lt
MMSYN1_0030 112 IELKNVQKSYitGDleTPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGsnlsllKDSHMTKFRRRTVGFVFQQYNLLTNLT 209
6788999998665522568********************************************9933333345666789******************* PP
TIGR00968 89 vrdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvf 186
++n G ++ +k ++e++e +++++ ++yp q+sGGq+qrv++arala +p++l+ dep gald ++ +++ + l k+ +e k t ++
MMSYN1_0030 210 AKENAEVGENLSS---KKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIV 304
********98864...4456789*************************************************************************** PP
TIGR00968 187 vthdqeealevadrivvlekGkieqvgs 214
vth+ + a ++a+ ++ +++G i++++
MMSYN1_0030 305 VTHNPNIA-KIANTVIHIKNGIIDNLEH 331
***98765.8***********9998765 PP
>> TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.2 0.2 1.5 99 258 313 .. 39 92 .. 8 115 .. 0.64
2 ! 150.0 0.3 3.3e-46 2.2e-44 9 208 .. 131 326 .. 123 337 .. 0.94
Alignments for each domain:
== domain 1 score: -0.2 bits; conditional E-value: 1.5
TIGR01186 258 dkglrsalkllkdedveslyvvdrekklvGvvdvesikkarkkaqlledvlkedil 313
k+ +s ll++ d +v+ +++k+ + + +k+ +k +++l + + +dil
MMSYN1_0030 39 TKTIKSEPVLLEQMDQREYIVIPNDQKFEPGI--KGLKQKQKLQKQLTNKYSKDIL 92
34555555677777777777788888887654..4555555555566666665554 PP
== domain 2 score: 150.0 bits; conditional E-value: 3.3e-46
TIGR01186 9 vndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqer 106
++ +d+++++ ++ivi+G+sGsGk+t + ++ l ++G +++ G ++ ++d ++ + rr+ +++v+q++ l+ t ++n ++g +l +
MMSYN1_0030 131 LKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMTKFRRRTVGFVFQQYNLLTNLTAKENAEVGENLSSK---KN 225
5789***********************************************************************************999764...44 PP
TIGR01186 107 kekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilk 204
e + +++++ +++yP+++sGG+qqrv +arala +Pd+l+ de+ +ald + ++ + lvk++k+++ t++ +th+ + a ++++ ++ +k
MMSYN1_0030 226 GMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIVVTHNPNIA-KIANTVIHIK 322
5567788999**********************************************99999*********************97655.9********* PP
TIGR01186 205 aGei 208
+G i
MMSYN1_0030 323 NGII 326
*976 PP
>> TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 146.2 0.4 4.2e-45 2.8e-43 1 218 [. 111 325 .. 111 340 .. 0.93
Alignments for each domain:
== domain 1 score: 146.2 bits; conditional E-value: 4.2e-45
TIGR02314 1 miklekiskvfdqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvka.rrqigmifqhfnllssr 97
+i+l++++k + gd + l+ +++ + k + + ++g sg+gk+t++ + l+k ++g+v+v g +l+ l++++++k rr +g++fq +nll+
MMSYN1_0030 111 IIELKNVQKSYITGDLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMTKFrRRTVGFVFQQYNLLTNL 208
599***************************************************************************9615689************* PP
TIGR02314 98 tvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltil 195
t +n + +l + +k ++e++ +g+ d+ + yp ++sggq+qrv+iarala +p +l+ de t ald + +le+l ++n++ + t++
MMSYN1_0030 209 TAKENAEVGENL---SSKKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVI 303
*****9987655...555667899************************************************************************** PP
TIGR02314 196 lithemdvvkricdevavidkge 218
++th+ ++ k i ++v i++g
MMSYN1_0030 304 VVTHNPNIAK-IANTVIHIKNGI 325
*****99876.899999999885 PP
>> TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 145.3 1.4 7.9e-45 5.2e-43 1 214 [. 112 326 .. 112 337 .. 0.89
Alignments for each domain:
== domain 1 score: 145.3 bits; conditional E-value: 7.9e-45
TIGR04520 1 ievenvsfkYee..eekkalkdvsleiekgefvaiiGhNGsGKsTlakllnglllpeegkvlvdgle..tleeenlweir.kkvglvfqnPdnqlvga 93
ie++nv+ +Y + e+++lk+++++++k +f++i+G GsGK+T+ +++gl ++++g+v v g + l+++++++ r ++vg+vfq+ n l +
MMSYN1_0030 112 IELKNVQKSYITgdLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNlsLLKDSHMTKFRrRTVGFVFQQY-NLLTNL 208
799*******88668899*********************************************87652156778888775268******85.555555 PP
TIGR04520 94 tveedvaFglENlgvpreeikkrveealkkvgleefrkkepkkLSGGqkqrvaiagvlalepeiiilDEatsmLDpkgrkevletvkklkkeekltvi 191
t +e+ a ENl +++ + ++e+ +++g+++ ++k p+++SGGq+qrv+ia +la +p+i+ DE+t LD + ++vle++ k++ke k+tvi
MMSYN1_0030 209 TAKEN-AEVGENLSSKKNGM--SIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVI 303
65555.55569*99999988..59************************************************************************** PP
TIGR04520 192 sitHdleeaveadrvivlekgki 214
++tH+ + a a+ vi +++g i
MMSYN1_0030 304 VVTHNPNIAKIANTVIHIKNGII 326
******************99976 PP
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 139.6 1.3 3.7e-43 2.5e-41 1 223 [. 112 326 .. 112 335 .. 0.90
Alignments for each domain:
== domain 1 score: 139.6 bits; conditional E-value: 3.7e-43
TIGR04521 1 iklknvsyiYqkgtpfekkalkdvsleiekgefvaiiGhtGsGKstliqhlngLlkptsGeveidgleikakkkkkkklkelrkkvglvFQfpekQLF 98
i+lknv+ Y +g +e+ lk ++++++k +f+ i+G +GsGK+t+++ + gL k ++G+v + g +++ k+++ +k r++vg+vFQ + L
MMSYN1_0030 112 IELKNVQKSYITG-DLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSL-LKDSHMTKFRRRTVGFVFQQ--YNLL 205
899*******777.69*****************************************************44.5666658888999******5..7788 PP
TIGR04521 99 eetvlkdiafgpknlglseeeveervkealelvgldeellerspfeLSGGqkrrvAiagvLamepevLvlDEptaGLDpkgrkellellkklkkekgk 196
+ +k+ a +nl ++ + e+ e++g+++++ ++ p+++SGGq++rv ia La +p++L DEpt LD + +++le+l k++ke+++
MMSYN1_0030 206 TNLTAKENAEVGENLSSKK--NGMSIDEIFETIGMKDQM-HKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKT 300
8888888777777776555..56689*********9875.789******************************************************* PP
TIGR04521 197 tvilvtHsmedvaeladrvivlkkGkv 223
tvi+vtH+ ++a++a++vi +k+G +
MMSYN1_0030 301 TVIVVTHN-PNIAKIANTVIHIKNGII 326
*******9.579***********9976 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 138.5 0.0 1.1e-42 7.3e-41 16 211 .. 134 327 .. 122 342 .. 0.94
Alignments for each domain:
== domain 1 score: 138.5 bits; conditional E-value: 1.1e-42
TIGR02142 16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerrisee 113
+d++l+ ++ + + G sGsGkt+++++i+GL ++++g + + g l + ++ +R vg+vFq+ +L + l+ +en + G + ++ ++ +s +
MMSYN1_0030 134 IDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMTKFRRRTVGFVFQQYNLLTNLTAKENAEVGENLSSKKN-GMSID 230
67778888899********************************999888888899*****************************99988887.7**** PP
TIGR02142 114 kvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvk 211
++ e +g++ ++++p+++sGG +qRv+i+RAl +P++L DeP aLDe+ +++l L ++++e k ++ v H+ ++a++a++v+ +++G +
MMSYN1_0030 231 EIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIVVTHNP-NIAKIANTVIHIKNGIID 327
*****************************************************************************98.5*************9876 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 133.1 0.7 3.7e-41 2.5e-39 3 222 .. 113 327 .. 111 336 .. 0.85
Alignments for each domain:
== domain 1 score: 133.1 bits; conditional E-value: 3.7e-41
TIGR00972 3 evknlklfy..g..ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiyd.kkldvvel.rkkvGmvfqkpnpf 94
e kn++ +y g e +lk +++++ k + ++++GpsG+Gk+t+l + l ++ +G+v++ g+++ k+ ++++ r++vG vfq++n
MMSYN1_0030 113 ELKNVQKSYitGdlETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKAS-----QGDVFVLGSNLSLlKDSHMTKFrRRTVGFVFQQYNLL 205
556666666322114559****************************9999998776.....8*****99998641444555551567*********99 PP
TIGR00972 95 p.msiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLk 191
+ + +n +g +l+ k+ ++dei e+ +kd+++k++ ++sGGqqqr++iarala +P++l DePt aLD ++ +k+ e++ +++
MMSYN1_0030 206 TnLTAKENAEVGENLSSKKNGMSIDEIFETI--------GMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVN 295
768999**********999999999998864........368*******************************************************9 PP
TIGR00972 192 kky..tivivthnmqqaarvsdktaffleGelv 222
k+y t+++vthn + a +++++++ + +G +
MMSYN1_0030 296 KEYktTVIVVTHNPNIA-KIANTVIHIKNGIID 327
986659*******8876.79****999999774 PP
>> TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.2 0.1 2.2e-39 1.4e-37 3 225 .. 114 326 .. 112 337 .. 0.84
Alignments for each domain:
== domain 1 score: 127.2 bits; conditional E-value: 2.2e-39
TIGR03005 3 isdvtkrf..gel..tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvr.ekiGmvfqs 95
+++v k + g+l vl+g+++++++ + + ++GpsGsGk+t l i+ l++ ++G + v g +l +k + h+ k r +G+vfq+
MMSYN1_0030 114 LKNVQKSYitGDLetPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLK----------DSHMTKFRrRTVGFVFQQ 201
55666655333331159*******************************************9666655544..........668888761569****** PP
TIGR03005 96 fnlfphktvldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrla 193
+nl+ t+ +n ++ + e+++ +G+ d+++++p q+sGGq+qrv+iarala +p +l+ de+t ald e+ +vl++l ++
MMSYN1_0030 202 YNLLTNLTAKENAEVGE----NLSSKKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVN 295
****9999999865443....334444445556899************************************************************** PP
TIGR03005 194 setdltmllvthemgfarefadrvlffdkGki 225
+e + t+++vth+ + a+ +a+ v+ ++G i
MMSYN1_0030 296 KEYKTTVIVVTHNPNIAK-IANTVIHIKNGII 326
**************9996.8999999988876 PP
>> TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 0.0 5.5 3.6e+02 196 226 .. 91 118 .. 81 132 .. 0.77
2 ! 126.2 0.4 5.7e-39 3.8e-37 6 202 .. 128 326 .. 119 334 .. 0.91
Alignments for each domain:
== domain 1 score: -1.8 bits; conditional E-value: 5.5
TIGR01188 196 iidkGkiiaedtpeeLKervgkevveverrd 226
i++kG+ii t+++ K +++k+++e+++++
MMSYN1_0030 91 ILNKGHII---TTQNYKPNLDKHIIELKNVQ 118
78999998...67888999999888866544 PP
== domain 2 score: 126.2 bits; conditional E-value: 5.7e-39
TIGR01188 6 fkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyD..vvrepd..ev.RrsigvvpqkasvdedLtarenlellgelyglpk 98
+ ++g+++k+++ + + +LGP G GKtt ++++++l k ++G ++v G + ++++++ + Rr +g v+q++++ +Lta+en e+ + l+
MMSYN1_0030 128 TPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNlsLLKDSHmtKFrRRTVGFVFQQYNLLTNLTAKENAEVGEN---LSS 222
66799********************************************762268988755442678********************99776...578 PP
TIGR01188 99 keaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrva 195
k++ ++e++e++ +k++ +k+ +++sgG+++r+++a++l ++P++lf DEPt LD + r++ +++ +++ke ++t+++ th+ + + k+a+ v+
MMSYN1_0030 223 KKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEyKTTVIVVTHNPN-IAKIANTVI 319
888999*************************************************************999999999*********965.668999999 PP
TIGR01188 196 iidkGki 202
i++G i
MMSYN1_0030 320 HIKNGII 326
9999987 PP
>> TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.7 0.1 7.2e-39 4.8e-37 1 177 [. 146 324 .. 146 336 .. 0.85
Alignments for each domain:
== domain 1 score: 125.7 bits; conditional E-value: 7.2e-39
TIGR01187 1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpa......ekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqlee 92
+LGpsGsGktt L +++Gl++ ++G + + g +++ ++r+v+ vfq+y L +t++en g + ++ + e++e++ +++
MMSYN1_0030 146 ILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDshmtkfRRRTVGFVFQQYNLLTNLTAKENAEVGENLSS---KKNGMSIDEIFETIGMKD 240
79*************************999988875432111112689********************999966654...445567999********* PP
TIGR01187 93 fakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkG 177
+++p+q+sGGq+qrv++ara++k+P+iL+ Dep +aLD+++ ++ + l++++++ tv++vth+ + a +++ + +++G
MMSYN1_0030 241 QMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIVVTHNPNIA-KIANTVIHIKNG 324
***********************************************99******************97766.344444445555 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.6 0.1 7.3e-39 4.8e-37 17 210 .. 134 329 .. 114 332 .. 0.90
Alignments for each domain:
== domain 1 score: 125.6 bits; conditional E-value: 7.3e-39
TIGR01277 17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvndkd......htrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkek 108
d+++++ + + ilG+sG+Gk+t+ln+i+G+ + +G++ v + + + +r v +fq+ nl++ lt ++n +G + + k n +
MMSYN1_0030 134 IDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNlsllkdSHMTKFRRRTVGFVFQQYNLLTNLTAKENAEVGENLSSKKNGMS--- 228
57888999*******************************998865111111344556789****************************9999875... PP
TIGR01277 109 vedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGk 206
++++ + +G++d +++ p+++sGGq+qrv++ar l ++ il+ dep ald+ + +++l ++ k+ +e k t+++vth++ ++a+ia+ v+ +++G
MMSYN1_0030 229 IDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIVVTHNP-NIAKIANTVIHIKNGI 325
7788899************************************************************************98.5889***********9 PP
TIGR01277 207 ikvl 210
i l
MMSYN1_0030 326 IDNL 329
9876 PP
>> TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.3 0.1 1.1e-38 7.1e-37 3 229 .. 112 326 .. 110 337 .. 0.89
Alignments for each domain:
== domain 1 score: 125.3 bits; conditional E-value: 1.1e-38
TIGR02769 3 levsdvshtyrtggllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafr.rdvqlvfqdsis 99
+e+++v + y tg l ++vl++++++l++ + +lG sG+Gk+t+ ++ Gl+k ++G+v+ G +l+ l+ +++ +fr r+v +vfq
MMSYN1_0030 112 IELKNVQKSYITGDL-----ETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMTKFRrRTVGFVFQQYNL 204
677788888888777.....579**********************************************************9997268******9888 PP
TIGR02769 100 avnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklk 197
n ++ +ge +l+ ++ i e++e+++++ ++++k+P+q+sGGq qr++iarala +P ++ de ld + ++le+l k++
MMSYN1_0030 205 LTNLTAKENAEVGE------NLSSKKNGMSIDEIFETIGMK-DQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVN 295
77776666666666......5667778899*********97.679***************************************************** PP
TIGR02769 198 qefGlaylfithdlrlvqkfaqrvlvldeGqi 229
+e ++++++th+ ++ k+a+ v+ +++G i
MMSYN1_0030 296 KEYKTTVIVVTHNPNI-AKIANTVIHIKNGII 326
*************876.579999999999965 PP
>> TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 122.5 0.0 7.2e-38 4.8e-36 23 218 .. 130 326 .. 114 337 .. 0.88
Alignments for each domain:
== domain 1 score: 122.5 bits; conditional E-value: 7.2e-38
TIGR03258 23 vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlt.....hlppyk.rnlallvqnyalfphlkveenvafGlrarkqskal 114
vl+ + ++++ + + +lG+sGsGktt l +++G+ ka+ G + v + +l+ h+ ++ r +++++q+y l+ l+ +en G + s+ +
MMSYN1_0030 130 VLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSllkdsHMTKFRrRTVGFVFQQYNLLTNLTAKENAEVGE---NLSSKK 224
8999*****************************************999985333337777752689*******************9995...455555 PP
TIGR03258 115 iaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkill 212
+ + + ++++ d +++p+q+sGGqqqrv++aral+ +pd+l+ dep ald ++ +v e l ++ +e + tv++vth+ + a +a+ +
MMSYN1_0030 225 NGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEY-KTTVIVVTHNPNIA-KIANTVIH 320
566788899************************************************************99997.679******98766.56777777 PP
TIGR03258 213 mkeGsl 218
+k+G +
MMSYN1_0030 321 IKNGII 326
788765 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 121.8 0.0 1.4e-37 9e-36 311 528 .. 101 320 .. 73 321 .. 0.83
Alignments for each domain:
== domain 1 score: 121.8 bits; conditional E-value: 1.4e-37
TIGR02857 311 kapltaaassslelenvsvay..egrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldad....swrkqiawv 401
++ ++ +++ +el+nv+ +y + + p+lk+++++++ ++++G+SG+GK+t l++++g+ ++ +G + v g++l+ l+ + r+++++v
MMSYN1_0030 101 QNYKPNLDKHIIELKNVQKSYitGDLEtPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDShmtkFRRRTVGFV 198
3333334444799999999988456668**********************************************88888777665333256778**** PP
TIGR02857 402 pQkP.llfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevl 498
Q+ ll++ t +en +++++ s++ + +de+ +++ g++ ++ + ++++SgGq+qR+++Aral+++ ++l DEPt +LD+e +vl
MMSYN1_0030 199 FQQYnLLTNLTAKENAEVGENLSSKK------NGMSIDEIFETI--GMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVL 288
88751555667777777777776666......788899999999..69999*********************************************** PP
TIGR02857 499 ealrela..egrtvllvaHrlalaeladkivv 528
e+l ++ + tv++v+H++++a+ a+++++
MMSYN1_0030 289 EILVKVNkeYKTTVIVVTHNPNIAKIANTVIH 320
*****995346899**************9997 PP
>> TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 121.1 0.2 1.8e-37 1.2e-35 1 191 [. 131 324 .. 131 331 .. 0.87
Alignments for each domain:
== domain 1 score: 121.1 bits; conditional E-value: 1.8e-37
TIGR01184 1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrm.......v..vfqnysllpwltvrenialavdavlrdlsks 89
lk++d+++ k +fi ++g sg gk+t+ln+i+gl+k ++g v + g +++ m v vfq+y ll lt++en v ++ls +
MMSYN1_0030 131 LKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMtkfrrrtVgfVFQQYNLLTNLTAKENAE-----VGENLSSK 223
799*****************************************999987555444422222223559***************75.....66777888 PP
TIGR01184 90 erreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvm 187
++ ++e +e +g+++ +k+p+q+sgg +qrv+iaral+ p++l+ dep gald ++ e l+k+ +e ++tv++vth+ + a +++ v+
MMSYN1_0030 224 KNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIVVTHNPNIAK-IANTVIH 320
888899***************************************************99999999*******************987765.4666776 PP
TIGR01184 188 ltng 191
+ ng
MMSYN1_0030 321 IKNG 324
6666 PP
>> TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 117.1 0.0 3.1e-36 2e-34 42 243 .. 133 326 .. 122 336 .. 0.92
Alignments for each domain:
== domain 1 score: 117.1 bits; conditional E-value: 3.1e-36
TIGR03415 42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvaka 139
++ +++++ + +v++G sGsGk+++l + gl+ s+G+v v + + ++ +++ k+r ++v vfq++ ll +t +en +G +ls +
MMSYN1_0030 133 GIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSN----LSLLKDSHMTKFRRRTVGFVFQQYNLLTNLTAKENAEVGENLS---SK 223
567889999*********************************9765....5557788999*****************************8875...56 PP
TIGR03415 140 errkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriai 237
+ ++e +e +g+++ +k+++++sGG qqrv +ara+a + dil+ deP ald + k+ + l+++ k+ k t++ v+h+ + a k+ n +
MMSYN1_0030 224 KNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIVVTHNPNIA-KIANTVIH 320
677899******************************************************************************98766.99999999 PP
TIGR03415 238 megGri 243
+++G i
MMSYN1_0030 321 IKNGII 326
999976 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 114.6 0.3 1.7e-35 1.1e-33 3 215 .. 114 331 .. 112 342 .. 0.87
Alignments for each domain:
== domain 1 score: 114.6 bits; conditional E-value: 1.7e-35
TIGR03410 3 venlevaYg....esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeerv...kaGiayvpqGreifpkltve 93
++n++ +Y e+ vl++++++++k++ +++lG g Gktt+l + gl k+++G + + g++++ lk ++ ++ +++v q +++++lt +
MMSYN1_0030 114 LKNVQKSYItgdlETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMTkfrRRTVGFVFQQYNLLTNLTAK 211
56666666412225789************************************************9877655443122789***************** PP
TIGR03410 94 enlelglealkkkekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqv 191
en e+g + ++kk+ ++ei+e + ++m ++ ++sGGqqq ++iaRaL+++P +l DePt + + +++ +++ +++ke + ++++v ++
MMSYN1_0030 212 ENAEVGENLSSKKNGMSIDEIFETIGMKDQM-HKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIVVTHN 308
***********999999*******9976666.567789***********************************************************9 PP
TIGR03410 192 ldfaleladrylvlerGevvaege 215
++a ++a++++ +++G + + ++
MMSYN1_0030 309 PNIA-KIANTVIHIKNGIIDNLEH 331
9988.5799999999998866554 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 112.9 1.8 4.8e-35 3.2e-33 463 679 .. 109 326 .. 75 328 .. 0.86
Alignments for each domain:
== domain 1 score: 112.9 bits; conditional E-value: 4.8e-35
TIGR03375 463 kGeielknvsfkY..peeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadl....rrnigyvpqdvtLfy 554
k+ ielknv+ +Y + e+++Lk + +k+ + + i+G GsGK+t l++++gl ++++G v + g +++ ++ +++ rr++g+v q+ +L++
MMSYN1_0030 109 KHIIELKNVQKSYitGDLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMtkfrRRTVGFVFQQYNLLT 206
5679*********7556799***************************************************999866533333899****99999986 PP
TIGR03375 555 G.tlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella 651
t ++N ++g++ +++ + + ++e+ + G+ q++ +++SgGQ+q v++aRal k+p+il+ DEPt alD++ +k+le L ++ +
MMSYN1_0030 207 NlTAKENAEVGENLSSKK------NGMSIDEIFE--TIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNK 296
436667777776655554......4444555554..4688888888999***********************************************99 PP
TIGR03375 652 ..dkTlvlvtHrtslLelvdriivldkGri 679
++T+++vtH ++ ++++ +i +++G i
MMSYN1_0030 297 eyKTTVIVVTHNPNIAKIANTVIHIKNGII 326
88899******************9999965 PP
>> TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.8 0.1 2.4e-34 1.6e-32 3 210 .. 113 326 .. 111 336 .. 0.88
Alignments for each domain:
== domain 1 score: 110.8 bits; conditional E-value: 2.4e-34
TIGR03864 3 eveglsfay..g..krralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeal.....arlGvvfqqstlDldlsv 91
e+++++++y g + +l+++++++ k++f+++LGp G+Gk+t ++++++L +a++g++ v+G++l+ + + + +++G vfqq l ++l+
MMSYN1_0030 113 ELKNVQKSYitGdlETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMtkfrrRTVGFVFQQYNLLTNLTA 210
556666666322224679***********************************************997666655522222469*************** PP
TIGR03864 92 eqnlryhaaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWa 189
++n + + ls+++ i+e+ + +g++++ ++ ++++GG+++rv iaral +P++L De+t LD e ++++e + ++ +e + +v+
MMSYN1_0030 211 KENAEVG---ENLSSKKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIVV 305
***8865...55799999******************************************************************************** PP
TIGR03864 190 thlvdeveaedrlvvlhkGkv 210
th + + +++++ +++G +
MMSYN1_0030 306 THNPNIAKIANTVIHIKNGII 326
**9999999999999999877 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 105.8 0.1 6.8e-33 4.5e-31 5 188 .. 128 310 .. 125 312 .. 0.87
Alignments for each domain:
== domain 1 score: 105.8 bits; conditional E-value: 6.8e-33
TIGR01166 5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkg.lle.lrkkvalvlqdpddqlfaadvdedvafgplnlGls 100
+ vlkg+++++++++ +++lG+ G+Gk+t+l+ ++Gl + +G v + G++l + + +++ +r++v++v+q+ + l++ ++ a nl +
MMSYN1_0030 128 TPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDShMTKfRRRTVGFVFQQYN--LLTNLTAKENAEVGENLSSK 223
569*************************************************998865255525678******864..66666666666666898877 PP
TIGR01166 101 eaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeG.ktvvisthdvd 188
++ ++e ++++++++ ++ h++sgG+++rv+ia a+a +pd+l+ dePt ld + +++leil k+++e +tv++ th+ +
MMSYN1_0030 224 KNG--MSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYkTTVIVVTHNPN 310
766..579*****************************************************99*********998751679999*9855 PP
>> TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 105.1 0.1 1.3e-32 8.4e-31 430 662 .. 90 326 .. 80 331 .. 0.84
Alignments for each domain:
== domain 1 score: 105.1 bits; conditional E-value: 1.3e-32
TIGR03797 430 PileaepEvdeekvdpgkLsGaievdrvtFrYekd..gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqav 525
il++ +++++ +p+ + ie+++v+ Y + + vL+ + +k ++ +f+ i G+SGsGK t+l ++ g +k ++G v+ G +l+ l + +
MMSYN1_0030 90 DILNKGHIITTQNYKPNLDKHIIELKNVQKSYITGdlETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHM 187
566666677778888888888899****999976522578**************************************************99986655 PP
TIGR03797 526 ....RrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSAL 619
Rr +G V+Q+ +l l+n++++++ + e + + g+ D +g+ + + +++SGGQ+QR+ iAral++ P il+ DE T AL
MMSYN1_0030 188 tkfrRRTVGFVFQQYNL-----LTNLTAKENAEVGENLSSKK-NGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGAL 279
55557889*****9876.....56888888888888877654.56655544556888899999999******************************** PP
TIGR03797 620 DNrtQaiVseslekl....kvtRiviAHRLSTirnadrilvleeGrv 662
D ++ + V e l k+ k t iv+ H + a+ ++ +++G +
MMSYN1_0030 280 DEEMGRKVLEILVKVnkeyKTTVIVVTHNPNIAKIANTVIHIKNGII 326
********999966522227899*****9999999999999999976 PP
>> TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.8 0.0 1.5e-12 9.9e-11 272 385 .. 104 213 .. 80 225 .. 0.82
2 ! 64.2 0.2 3e-20 2e-18 151 249 .. 231 328 .. 217 337 .. 0.91
Alignments for each domain:
== domain 1 score: 38.8 bits; conditional E-value: 1.5e-12
TIGR03269 272 evevgediikvkdvskryis..vdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyi 367
+ +++++ii +k+v+k yi+ ++ v+k ++++++ +++ ++G sG+Gktt +i+ G+ + ++G+v v +G + + + k +++ r ++ +
MMSYN1_0030 104 KPNLDKHIIELKNVQKSYITgdLETPVLK---GIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFV-LGSN-LSLLKDSHMTKFR-RRTV 195
457899*************8335566666...566888899999***************************987.6776.5666667788877.5789 PP
TIGR03269 368 Gllhqeyalyphrtvlen 385
G+++q+y+l + t en
MMSYN1_0030 196 GFVFQQYNLLTNLTAKEN 213
*********998777666 PP
== domain 2 score: 64.2 bits; conditional E-value: 3e-20
TIGR03269 151 elleevklehrithiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiv 248
e++e++ ++ ++ + ++sGG++qrv +ar lak+p +l+adeptG+ld + v e+l + ke++ ++++ +h p++ +++++ i +++G i
MMSYN1_0030 231 EIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIVVTHNPNI-AKIANTVIHIKNGIID 327
6788999999999999***************************************************************95.89***********997 PP
TIGR03269 249 e 249
+
MMSYN1_0030 328 N 328
6 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 103.0 0.0 5.5e-32 3.7e-30 331 530 .] 108 309 .. 75 309 .. 0.80
Alignments for each domain:
== domain 1 score: 103.0 bits; conditional E-value: 5.5e-32
TIGR02868 331 ekptlelrdlsvsypga..ee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesev....rrvvsvlaqdaHlF 421
+k +el++++ sy ++ e+ vlkg++++l + + ++G+sG+GK+t l+++ gl ++++G+v + g +++ l++s++ rr+v ++ q+
MMSYN1_0030 108 DKHIIELKNVQKSYITGdlETpVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMtkfrRRTVGFVFQQY--- 202
6677888888888854311335***********************************************99999988877333345566666654... PP
TIGR02868 422 dttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaee 519
++ Nl ++ +e+l++ + + + + G++ ++++ +++SGG++qR+ +ARaL ++ ++l DEPt LD e ++++le L+++++
MMSYN1_0030 203 --NLLTNLTAKENAEVGENLSSKKNGMSIDEIFET--IGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNK 296
..456676533333345666666666666666666..7********************************************************8888 PP
TIGR02868 520 grt..vvlvthrl 530
++ v++vth++
MMSYN1_0030 297 EYKttVIVVTHNP 309
765459*****85 PP
>> TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 101.5 0.3 1.5e-31 1e-29 318 533 .. 113 328 .. 82 334 .. 0.85
Alignments for each domain:
== domain 1 score: 101.5 bits; conditional E-value: 1.5e-31
TIGR01842 318 evenv..slvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlG....ksiGYlPqdveLfeGtva 409
e++nv s+ + + ++++lkgi+++l++ ++++i+GpsgsGk++ ++ G + ++G v + g +l+ ++ +++G++ q+ +L++ a
MMSYN1_0030 113 ELKNVqkSYITGDLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMTkfrrRTVGFVFQQYNLLTNLTA 210
5555511456677789**********************************************99998776665554111258***********99999 PP
TIGR01842 410 eniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkel.karkit 506
+ a ++en+ ++k + + ++ e i G ++ + +++sgGq+qR+++aRal +P ++ DeP LDee +++ l+++ k+ k+t
MMSYN1_0030 211 KENAEVGENLSSKK--NGMSIDEIFETI-----GMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVnKEYKTT 301
999*****999998..677888888887.....8889999*************************************997777777777772566899 PP
TIGR01842 507 vvvithrpsllelvdkilvlkdGalka 533
v+v+th p++ ++++ ++ +k+G + +
MMSYN1_0030 302 VIVVTHNPNIAKIANTVIHIKNGIIDN 328
9**********************9876 PP
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 99.3 0.1 7.6e-31 5e-29 3 204 .. 132 326 .. 130 340 .. 0.85
Alignments for each domain:
== domain 1 score: 99.3 bits; conditional E-value: 7.6e-31
TIGR02770 3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal......alrgreialilqnPrsafnPlltikeqlletlkalek 94
++++++l + + ++G sGsGk++ i gl + +++G++ + g +l+ l ++r r++++++q+ +n l +++ + e + e+
MMSYN1_0030 132 KGIDIKLDKSDFIVILGPSGSGKTTFLNIISGL----DKASQGDVFVLGSNLSLLkdshmtKFRRRTVGFVFQQ----YNLLTNLTAK--ENAEVGEN 219
78999******************9754444443....3689**********99888999999***********7....7888887655..44455555 PP
TIGR02770 95 ls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvae 191
ls k+ i e +e +g+++ ++kyp+++sGG qRv ia al+ ++ +l+aDePt +lD + +vL+ l +++++ ++++++th+ + +a+
MMSYN1_0030 220 LSsKKNGMSIDEIFETIGMKD---QMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIVVTHNPN-IAK 313
544455558999******994...59*****************************************************************976.8** PP
TIGR02770 192 ladevavmekGki 204
+a+ v+ +++G i
MMSYN1_0030 314 IANTVIHIKNGII 326
*********9954 PP
>> TIGR00958 3a01208: antigen peptide transporter 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 97.7 0.3 1.9e-30 1.2e-28 466 693 .. 99 328 .. 93 339 .. 0.83
Alignments for each domain:
== domain 1 score: 97.7 bits; conditional E-value: 1.9e-30
TIGR00958 466 lsgtlapknleGkveFqdVsFsYPsrp.dkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeyd....hkylhrkva 558
++ +++p+ ++ +e ++V+ sY + ++pvlk++ ++l + + + GPsGsGK t ++ l + +G+v + g +l+ + k+ +r v+
MMSYN1_0030 99 TTQNYKPNLDKHIIELKNVQKSYITGDlETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKdshmTKFRRRTVG 196
5678999999*************9865389*************************************************9987642212467789999 PP
TIGR00958 559 lVgqE.PvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....e 651
V q +l + + +eN G + + k+ + d i e + g++ ++ + +q+sgGq+qr+ iARAL ++P +L De t ALD +
MMSYN1_0030 197 FVFQQyNLLTNLTAKENAEVGENLSSK-------KNGMSIDEIFE-TIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEemgrK 286
885541566777788887777544433.......33333344444.457888999999***********************************66666 PP
TIGR00958 652 veqllqesksaksrtvlliahrLstvekadkilvlkkgsvve 693
v ++l + +++++ tv++++h ++++ a+ ++ +k+g + +
MMSYN1_0030 287 VLEILVKVNKEYKTTVIVVTHNPNIAKIANTVIHIKNGIIDN 328
66667779999**************************98866 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 94.4 1.1 2.9e-29 1.9e-27 18 218 .. 131 324 .. 111 333 .. 0.84
Alignments for each domain:
== domain 1 score: 94.4 bits; conditional E-value: 2.9e-29
TIGR03411 18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeia...rlGigRkfqkpsvfeeltvlenlelalkadksvlall 112
l+ +++++++ ++ vi+Gp G+Gktt+l++i+G ++++G+v++ g++l+ lk+++++ r +g fq+ +++ +lt +en e v ++l
MMSYN1_0030 131 LKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMTkfrRRTVGFVFQQYNLLTNLTAKENAE--------VGENL 220
78899*****************************************998877776665111556666666666666666666655........55667 PP
TIGR03411 113 farlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelake..rsvvvvehDmefvrel 208
sk++ +i+e+ e+ig++++++k ++s Gq+q++ i+ l+++p++l+ DeP+ + +e +k+ e+l +++ke ++v+vv h+ + ++++
MMSYN1_0030 221 ---SSKKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEykTTVIVVTHNPN-IAKI 314
...45667789***************************************************99999**********9853379******976.7788 PP
TIGR03411 209 aekvtvlheG 218
a++v +++G
MMSYN1_0030 315 ANTVIHIKNG 324
8888777777 PP
>> TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 94.7 0.1 1.7e-29 1.1e-27 331 546 .. 111 326 .. 76 333 .. 0.81
Alignments for each domain:
== domain 1 score: 94.7 bits; conditional E-value: 1.7e-29
TIGR02203 331 kvefrnvtfry..pgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdl...adlkLasLR.rqvalvsqdvvLFdd. 421
+e++nv+ y ++ ++++l++i++k+++ + + + G+sGsGk+t +n+++ + ++G++ + g +l +d ++++ R r v +v q+ L +
MMSYN1_0030 111 IIELKNVQKSYitGDLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLsllKDSHMTKFRrRTVGFVFQQYNLLTNl 208
5899******9333456789********************************************9998622267788887615799**9998876441 PP
TIGR02203 422 tiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkg 519
t en ge+ + + + + ++ ++ G++ ++ + ++sGGq qR++iaRal k+ iL De t aLD+e R+v + L ++ k+
MMSYN1_0030 209 TAKENAEVGEN-------LSSKKNGMSIDEIFET--IGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKE 297
55556555555.......2222333334444443..489999999999***********************************************987 PP
TIGR02203 520 .Rtt.lviahRLstiekaDrivvlddGki 546
+tt +v+ h + a+ ++ + +G i
MMSYN1_0030 298 yKTTvIVVTHNPNIAKIANTVIHIKNGII 326
44442678999999999999999999954 PP
>> TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 94.9 2.5 1.9e-29 1.3e-27 2 204 .. 113 328 .. 112 341 .. 0.86
Alignments for each domain:
== domain 1 score: 94.9 bits; conditional E-value: 1.9e-29
TIGR03740 2 etknlskkfk....kqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGei........lldgrewtrkdlkkiGsliesPalyenlta 87
e kn++k++ + v++ +++k++k++ +lGp G+Gk+t l +++Gl + ++G++ ll+++++t+ + +G + ++ l nlta
MMSYN1_0030 113 ELKNVQKSYItgdlETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVfvlgsnlsLLKDSHMTKFRRRTVGFVFQQYNLLTNLTA 210
678888888522224569****************************************992222222234667888889999**************** PP
TIGR03740 88 renlkvrtlllglpe.srieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldP.lGiqelreliksfpekGitvilsshi 183
+en +v l + ++ i+e++++++++++ k +q+s G +qr+ ia al ++P++l dePt ld +G + l l+k +e +tvi+ +h
MMSYN1_0030 211 KENAEVGENLSSKKNgMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEeMGRKVLEILVKVNKEYKTTVIVVTHN 308
******988877655268***************************************************95499999999999999***********6 PP
TIGR03740 184 lsevelladhiGiiseGklky 204
++ ++a+ + i++G +
MMSYN1_0030 309 -PNIAKIANTVIHIKNGIIDN 328
.7899************9864 PP
>> TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 94.5 0.1 1.6e-29 1.1e-27 450 687 .. 83 324 .. 64 333 .. 0.78
Alignments for each domain:
== domain 1 score: 94.5 bits; conditional E-value: 1.6e-29
TIGR03796 450 lenpvdeeleeeeekaaeseekekLsGk.velrnvtfgysa..leapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpre 544
l+n+ +++ ++ + ++++ k +L+ + +el+nv+ +y + le+p++++++++l++ + + G+sGsGk t +++Gl + ++G++++ g +++
MMSYN1_0030 83 LTNKYSKDILNKGHIITTQNYKPNLDKHiIELKNVQKSYITgdLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLS 180
444444444444444444555577765527*********753389***************************************************99 PP
TIGR03796 545 eiprevlan....slalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLi 638
++ + +++ ++ +v q+ l+ nlt +++ e+l + k+ + d+i ++ g++ ++++ + +sGGq+qR+ iARaL+knP iL
MMSYN1_0030 181 LLKDSHMTKfrrrTVGFVFQQYNLL-----TNLTAKENAEVGENLSSK-KNGMSIDEIFETI-GMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILF 271
9888776542222788888877665.....578877777777887665.5566667787655.6788999**************************** PP
TIGR03796 639 lDEatsaLDaetEkaidenl....rrRgctciivaHRLstiRdcdeiivlerG 687
DE t aLD e +++ e l ++ t+i+v+H + ++ +i +++G
MMSYN1_0030 272 ADEPTGALDEEMGRKVLEILvkvnKEYKTTVIVVTHNPNIAKIANTVIHIKNG 324
**************999988333234568999999987777777777777777 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 93.0 0.3 5.2e-29 3.4e-27 449 669 .. 104 326 .. 76 334 .. 0.83
Alignments for each domain:
== domain 1 score: 93.0 bits; conditional E-value: 5.2e-29
TIGR01846 449 lpelkGa.iefenirfryked..spevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawl....rrqvgvvlqe 539
p+l+ + ie++n++ y +++vl+ + +++ + ++i i GpsGsGk+t+ ++ l +G v+v g +l+l+ + + rr vg v+q+
MMSYN1_0030 104 KPNLDKHiIELKNVQKSYITGdlETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMtkfrRRTVGFVFQQ 201
56665442799999999975412578***************************************************98654433334899**99987 PP
TIGR01846 540 .nvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnl 636
n+l + + ++n +++ s+++ + + + i e G + ++ ++sGGq+qr+++aral +nP il de t ald e + + + l
MMSYN1_0030 202 yNLLTNLTAKENAEVGENLSSKKNGMSIDE-------IFE-TIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEIL 291
478888899999988887776666555543.......433.4589999999999******************************************** PP
TIGR01846 637 reickg..rtviiiahrlstvraadrilvlekGki 669
++ k+ tvi+++h + + a+ ++ +++G i
MMSYN1_0030 292 VKVNKEykTTVIVVTHNPNIAKIANTVIHIKNGII 326
***9963369**********************976 PP
>> TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 92.8 0.1 7.5e-29 4.9e-27 2 216 .. 112 316 .. 111 323 .. 0.86
Alignments for each domain:
== domain 1 score: 92.8 bits; conditional E-value: 7.5e-29
TIGR02324 2 levedlsktfilhqqgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfL 99
+e ++++k++i ++ pvlk +++++++ +++++ G+sG+Gk t+l + + ++++g ++v ++ l +++ ++ + Rr+t+g+v q
MMSYN1_0030 112 IELKNVQKSYITGD---LETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSN----LSLLKDSHMTKFRRRTVGFVFQQY 202
78899999998755...579*********************************************98743....45578999**************** PP
TIGR02324 100 rviPRvsalevvaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvveli.keak 196
+ ++a e ++ + +++++ +e+++ + + +++ +++ sGG +qRv iaral ++ iL dePt +Ld+ + v+e++ k k
MMSYN1_0030 203 NLLTNLTAKENAE---VGENLSSKKNGMSIDEIFETIGMKDQMHKYP-HQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILvKVNK 296
9999999987543...34456777888899*************9998.99*****************888999*********9988788886515678 PP
TIGR02324 197 argaaligifhdeevrelva 216
+ +++i + h+ ++ + +
MMSYN1_0030 297 EYKTTVIVVTHNPNIAKIAN 316
8899*******999877654 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.1 0.0 5e-28 3.3e-26 12 187 .. 127 309 .. 119 319 .. 0.89
Alignments for each domain:
== domain 1 score: 90.1 bits; conditional E-value: 5e-28
TIGR01189 12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrde.....laeellylgHldglKaeLsalEnLkfyaallqse 104
e+ +l+g++++l +++v+ Gp G+GKtt L i++GL k+++G v + +++l+ +d+ +++++ ++ + l ++L+a+En + ++l++++
MMSYN1_0030 127 ETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDShmtkfRRRTVGFVFQQYNLLTNLTAKENAEVGENLSSKK 224
5789******************************************9988887655554111115678999***********************9987 PP
TIGR01189 105 qk.tveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDke.gvellaellaaHlargGivllathqd 187
+ +++e e++g+++ + +q+s Gq++R+++ar l ++ + DEPt alD+e g ++l+ l++ + +v++ th++
MMSYN1_0030 225 NGmSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEmGRKVLEILVKVNKEYKTTVIVVTHNP 309
7779****************************************************983588888899999999999*****986 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 89.7 0.0 6.5e-28 4.3e-26 14 214 .. 128 325 .. 114 335 .. 0.87
Alignments for each domain:
== domain 1 score: 89.7 bits; conditional E-value: 6.5e-28
TIGR03873 14 rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkals....rrararrvalveqdsdaevplsvrdvvalGriPhrslf 107
++++++d++ + +lGP GsGk+t+l++++Gl ++++G+v + g++l l+ + r r v v q+ + ++l++++ +G
MMSYN1_0030 128 TPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKdshmTKFRRRTVGFVFQQYNLLTNLTAKENAEVGEN------ 219
57999**********************************************7655421126779999***********************74...... PP
TIGR03873 108 aadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvc 204
+s+++ +d+++ ++++++ ++ + +sGG++qrv +arala++P +l+ dePt ld + ++l+++ + + ++tv+v h+ n a +++
MMSYN1_0030 220 -LSSKKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNkEYKTTVIVVTHNPNIA-KIA 315
.455566667899999***********************************************9999999887776525678888888998876.678 PP
TIGR03873 205 dhvvvldgGr 214
+ v+ +++G
MMSYN1_0030 316 NTVIHIKNGI 325
8888888775 PP
>> TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.1 1.4 4.8e-28 3.1e-26 3 208 .. 113 321 .. 111 333 .. 0.86
Alignments for each domain:
== domain 1 score: 90.1 bits; conditional E-value: 4.8e-28
TIGR04406 3 kaenlaksy....kkrkvvkdvslevksgeivGllGPnGaGkttsfymivGlvkadaGkvllddedit...klplherarlGigylpqeasifrkltv 93
+ +n++ksy + v+k++ +++++++ + +lGP G+Gktt +++i Gl ka +G+v + +++++ + + + r+ +g++ q+ ++ +lt
MMSYN1_0030 113 ELKNVQKSYitgdLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSllkDSHMTKFRRRTVGFVFQQYNLLTNLTA 210
678999999543335789**********************************************998722246799999******************* PP
TIGR04406 94 eenlkavlelredldkeereekleelleeleiahlrekkaaslsGGerrrveiaralaaePkfilldePfagvdPiavsdi.kklikllkergiGvli 190
+en e+ e+l+ +++ ++e++e + ++ +k ++sGG+++rv iarala +P++++ deP ++d ++ + l+k+ ke v++
MMSYN1_0030 211 KENA----EVGENLSSKKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVlEILVKVNKEYKTTVIV 304
***7....678899999*********************************************************866555515567888999999999 PP
TIGR04406 191 tdhnvretldivdrayiv 208
hn ++ +i+++ +
MMSYN1_0030 305 VTHNP-NIAKIANTVIHI 321
99995.445555555555 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.0 0.2 2e-27 1.3e-25 35 227 .. 125 310 .. 95 326 .. 0.80
Alignments for each domain:
== domain 1 score: 88.0 bits; conditional E-value: 2e-27
TIGR00955 35 kpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrse...kglkvsgd..vllnGekveakemraisayvqqddlfiptltvrehLmfsahlr 127
e +lk++ ++ + +++ +lG+SG+GKtT ln+++ ++ ++ v g+ ll +++ k r+ ++v q+ ++ lt++e+
MMSYN1_0030 125 DLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKasqGDVFVLGSnlSLLKDSHMT-KFRRRTVGFVFQQYNLLTNLTAKENAE------ 215
35677899999999999*******************9976541115565555555566666666.7778899*****9999********754...... PP
TIGR00955 128 lkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgk.tviltiH 224
+ ++l++k+ ++e+ e++g+++ + p + +SgG+++R+++a l ++P +Lf+DEPT LD + +v+++L k+ ++ k tvi++ H
MMSYN1_0030 216 VGENLSSKKNGMSIDEIFETIGMKDQMHKY---PHQ---MSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKtTVIVVTH 307
578888899999***********9988865...445...9*********************************************988552799999* PP
TIGR00955 225 QPs 227
P
MMSYN1_0030 308 NPN 310
*96 PP
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.6 0.1 2.1e-26 1.4e-24 336 555 .. 110 328 .. 97 335 .. 0.81
Alignments for each domain:
== domain 1 score: 84.6 bits; conditional E-value: 2.1e-26
TIGR02204 336 geiefeevkfayPa.rpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeel....rerlalvpqdsalfaa 428
ie+++v+ +y + ++++l+g+d+++++ + + + GPsG+Gk+t l+++ + ++G + + G +l l+ +++ r+++ +v q+ +l+++
MMSYN1_0030 110 HIIELKNVQKSYITgDLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMtkfrRRTVGFVFQQYNLLTN 207
568999999999652789***************************************************976655443233345689**999999876 PP
TIGR02204 429 .svleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkg 525
++en G+ +s+++ + de +++ G + ++ ++sGGq+qr++iara+ k+ iL+ de t aLd e ++v + l ++ k+
MMSYN1_0030 208 lTAKENAEVGENLSSKKNG------MSIDEIFETI--GMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKE 297
37999*9999887777653......3456666654..8899999999*****************************************9999988776 PP
TIGR02204 526 .rttlv.iahrLatvlkadrivvldkGriveq 555
+tt++ + h + a+ ++ + +G i+++
MMSYN1_0030 298 yKTTVIvVTHNPNIAKIANTVIHIKNG-IIDN 328
477765156777766777888888877.4455 PP
>> TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.5 1.0 3.2e-26 2.1e-24 3 210 .. 112 326 .. 110 339 .. 0.86
Alignments for each domain:
== domain 1 score: 84.5 bits; conditional E-value: 3.2e-26
TIGR03522 3 vevsdlsklygk....qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavaged..vlknslev...rkniGylPehnPlyldly 91
+e++++ k+y + +l+ + + +k + + lGP G+Gk+t + i++g ka+ G v+v g++ lk+s r+++G++ + l +l
MMSYN1_0030 112 IELKNVQKSYITgdleTPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNlsLLKDSHMTkfrRRTVGFVFQQYNLLTNLT 209
567788888865222145899******************************************99862268887654223799*************** PP
TIGR03522 92 vreylefsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakd..ktvil 187
+e e +l +++k ++e+ e +G+k + hk ++s G +qrv +a+al +P++l dePt ld + ++ e++ ++ k+ tvi+
MMSYN1_0030 210 AKENAEVGENL---SSKKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEykTTVIV 304
***98887765...55668899****************************************************998888888888888754257999 PP
TIGR03522 188 sthimqevealcdrviiinkGki 210
th ++ + + vi i++G i
MMSYN1_0030 305 VTHN-PNIAKIANTVIHIKNGII 326
9996.68999*********9976 PP
>> TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 79.5 6.0 7.1e-25 4.7e-23 471 691 .. 109 330 .. 70 334 .. 0.74
Alignments for each domain:
== domain 1 score: 79.5 bits; conditional E-value: 7.1e-25
TIGR01193 471 ngdievndvsysy..G.ygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhel....rqlinylPqePfifs 561
+ ie+++v+ sy G + ++vl+ i++k++k + i+++G sGsGk+t+ ++ ++ +a++G++ + g +l+ ++ +++ r+++ ++ q+
MMSYN1_0030 109 KHIIELKNVQKSYitGdLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMtkfrRRTVGFVFQQY---- 202
334566677666622325679********************************************99998877765554111234566665553.... PP
TIGR01193 562 GsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkd 659
+l nl + + +v ++ + + i++ e ++G++ ++ + ++sgGq+qr+++aral + ++l de t ld + +k++e l+k+++
MMSYN1_0030 203 -NLLTNLTAKENAEVGEN-LSSKKNGMSIDEIFE--TIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNK 296
.57788766666555543.333333334443334..35899999999************************************************985 PP
TIGR01193 660 ...ktiifvahrlsvakksdkiivldeGkiieqGs 691
t+i v+h ++ak ++ +i +++G ii++ +
MMSYN1_0030 297 eykTTVIVVTHNPNIAKIANTVIHIKNG-IIDNLE 330
332589*******************998.555555 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 76.0 0.0 1.2e-23 7.9e-22 1 191 [. 136 326 .. 136 342 .. 0.75
Alignments for each domain:
== domain 1 score: 76.0 bits; conditional E-value: 1.2e-23
TIGR03771 1 lsvdkGellgllGpnGaGkttllrailglikvakGsvkvagkssr.kgrreiGyvpqrhefawdfpi.dveqtvlsGragliGllrrpkkadfaavad 96
+++dk +++ +lGp G+Gktt+l i gl k+++G v v g + + +++ r + f ++ + + +G +k ++ +++++
MMSYN1_0030 136 IKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSlLKDSHMTKFR-RRTVGFVFQQyNLLTNLTAKENAEVGENLSSK-KNGMSIDE 231
5789*********************************9988543312223333332.23333333320223333334456677765555.566799** PP
TIGR03771 97 alervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelage.gtailmtthdlaeavatcdrvvllngrvv 191
+e++ +++ ++ ++sGGq+qrv +arala +p +l+ dep ld +++e++ ++ +e +t+++++th+ a ++++ v+ + + ++
MMSYN1_0030 232 IFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEyKTTVIVVTHNPNIA-KIANTVIHIKNGII 326
**************************************************************9988356788999985544.56666666655555 PP
>> TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.1 0.5 1.6e-10 1.1e-08 289 383 .. 78 177 .. 28 195 .. 0.79
2 ! 41.4 0.0 2.6e-13 1.7e-11 157 234 .. 244 324 .. 199 334 .. 0.73
Alignments for each domain:
== domain 1 score: 32.1 bits; conditional E-value: 1.6e-10
TIGR03719 289 rlaryeelaseesekkeetaeivipp..gerlGdkvievenlskaf..g..dklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelk 380
+l+ ++l+++ s++ ++ +i+ ++ + l +++ie++n++k++ g + +++ +++kl k+ + ++Gp G+Gk+t++++i+g +k +G++
MMSYN1_0030 78 KLQ--KQLTNKYSKDILNKGHIITTQnyKPNLDKHIIELKNVQKSYitGdlETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVF 173
443..35666666666666666655412578**************95422246789***************************************975 PP
TIGR03719 381 i.Ge 383
+ G+
MMSYN1_0030 174 VlGS 177
4155 PP
== domain 2 score: 41.4 bits; conditional E-value: 2.6e-13
TIGR03719 157 akveklsGGekrrvalcrlllekPdlllldePtnhldaes....vaWlekflkeykGtvvavthdryfldnvaeWileldrG 234
+ +++sGG+++rv+++r l ++Pd+l+ dePt ld e ++ l k keyk tv++vth+ + ++a+ ++ + G
MMSYN1_0030 244 KYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMgrkvLEILVKVNKEYKTTVIVVTHNPN-IAKIANTVIHIKNG 324
334789*******************************9953332677888899***********865.45666666666555 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.4 0.2 8.6e-22 5.7e-20 354 546 .. 134 325 .. 106 332 .. 0.80
Alignments for each domain:
== domain 1 score: 69.4 bits; conditional E-value: 8.6e-22
TIGR01192 354 vsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtresl....rksiatvfqdagll.nrsirenirlgredatdeevveaak 446
+ ++ + + i+gp+g+gktt++n++ + + ++g + + g +++ ++ + r+++ vfq+ ll n + +en ++g + +++++ +
MMSYN1_0030 134 IDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDSHMtkfrRRTVGFVFQQYNLLtNLTAKENAEVGENLSSKKNGMS--- 228
66677778899***********************************977654332333899*******998736788888888887777666554... PP
TIGR01192 447 aaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrkn.rttfi.iahrlstvreadlvlfl 542
d i + + g + ++ + ++sgg++qr++iara+ kn il de t ald e +v + + ++k+ +tt i ++h + a+ v+ +
MMSYN1_0030 229 ----IDEIFETI-GMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEyKTTVIvVTHNPNIAKIANTVIHI 321
....45555544.445566677899****************************************998888876366665157888888889999999 PP
TIGR01192 543 dqgr 546
+g
MMSYN1_0030 322 KNGI 325
8885 PP
>> TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.9 0.4 1.7e-20 1.1e-18 4 217 .. 114 324 .. 111 340 .. 0.82
Alignments for each domain:
== domain 1 score: 64.9 bits; conditional E-value: 1.7e-20
TIGR02633 4 mkgivkkf..gg..vkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegee...lkassirdterkGiviihqeltlvkels 94
+k++ k++ g+ l++id+kl+ + + + G G+Gk+t++ ++sg+ +G+++ g++ lk s++ + r+ + + q+ l+ +l+
MMSYN1_0030 114 LKNVQKSYitGDleTPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKAS--QGDVFVLGSNlslLKDSHMTKFRRRTVGFVFQQYNLLTNLT 209
556666553333113469*********************************8765..68888877762225899************************ PP
TIGR02633 95 vleniflGneitlkGglmdydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdl.kakg 191
en +G++++ k m+ +e+++ + ++++ + p ++ +Gqqq v ia+al k+ +l dep+ +l e+ + +l+i+ + k+
MMSYN1_0030 210 AKENAEVGENLSSKKNGMSI-------DEIFETIGMKDQMHKYP-HQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVnKEYK 299
***********988855554.......56677778877777774.78999******************************999999998666515556 PP
TIGR02633 192 vacvyishkleevkavsdtisvirdG 217
+ + ++h +++ +++t+ i++G
MMSYN1_0030 300 TTVIVVTHN-PNIAKIANTVIHIKNG 324
666777776.5688899999999988 PP
>> TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.2 0.0 4.4e-20 2.9e-18 24 214 .. 138 324 .. 109 340 .. 0.78
Alignments for each domain:
== domain 1 score: 64.2 bits; conditional E-value: 4.4e-20
TIGR02323 24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGl.rmevsaGanigerllavgarhyGki 120
l + + i+G sGsGk+t+l+ +++ a++G+v +l l +++ ++ r G+v q+ + l ++ a++ge l + G
MMSYN1_0030 138 LDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGS----NLSLLKDSHMTKFRRRTVGFVFQQYNLLtNLTAKENAEVGENLSSK---KNGMS 228
55677899******************99******976544....466777777777777789***9988755145666788999998765...44543 PP
TIGR02323 121 raaakwlekveida.arikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivthlavarllaqrllvmkqG 214
+ +e + ++ p+++sGG qqr+ iar+l +p ++f eptG l + ++l +l ++ +e + +vi+vth + +a+ ++ +k+G
MMSYN1_0030 229 --IDEIFETIGMKDqMHKYPHQMSGGQQQRVSIARALAKNPDILFAdEPTGALdEEMGRKVLeILVKVNKEYKTTVIVVTHNPNIAKIANTVIHIKNG 324
..34456777765504459***************************9******6667777778999999************77766778888888877 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 62.5 0.0 1.1e-19 7.5e-18 4 194 .. 111 308 .. 108 327 .. 0.86
Alignments for each domain:
== domain 1 score: 62.5 bits; conditional E-value: 1.1e-19
TIGR01288 4 aidlvgvsksy..gd..kvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvp.....ararlarakigvvpqfdnldref 92
i+l +v+ksy gd v++ + + + + + + +lgp g+gk+t ++ gl ++g + vlg++ ++ r +g v q nl +++
MMSYN1_0030 111 IIELKNVQKSYitGDleTPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSllkdsHMTKFRRRTVGFVFQQYNLLTNL 208
699*******9654432568999*******************************************975322221567888999************** PP
TIGR01288 93 tvrenllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargkt.il 189
t++en v +ls+++ i ++e ++ + + ++sgg ++r+++aral ++p++l dept ld + e l + kt ++
MMSYN1_0030 209 TAKENAEVGE---NLSSKKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTtVI 303
*****99843...689999999******************************************************9999999999888877775256 PP
TIGR01288 190 ltthl 194
+ th
MMSYN1_0030 304 VVTHN 308
66774 PP
>> TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.4 0.1 8.7e-19 5.7e-17 335 547 .. 110 326 .. 94 332 .. 0.87
Alignments for each domain:
== domain 1 score: 59.4 bits; conditional E-value: 8.7e-19
TIGR01194 335 dslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavs...desrddy.rdlfsavfadyylfd 428
+elk+v+ sy + + l id+++ + +++ i+G G Gk+t++ ++ Gl + +G++++ G +s d + r vf +y l+
MMSYN1_0030 110 HIIELKNVQKSYITGDLETPV-LKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSllkDSHMTKFrRRTVGFVFQQYNLLT 206
469*********999887775.777*****************************************99987644234445562567889********* PP
TIGR01194 429 dlvqpdekkq.asldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilv 525
+l ++ + l ++ +s e+ + + ++d + ++s Gq++r+++ a ++ +l de + d + r e l+ k t++v
MMSYN1_0030 207 NLTAKENAEVgENLSSKKNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIV 304
**99766665145667778899999************999********************99***************9999988888888888899** PP
TIGR01194 526 ishddryfeladrlikladGkv 547
++h+ + ++a+ +i++ +G +
MMSYN1_0030 305 VTHNPNIAKIANTVIHIKNGII 326
******************9977 PP
>> TIGR01978 sufC: FeS assembly ATPase SufC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 54.7 1.9 3.4e-17 2.2e-15 12 217 .. 127 321 .. 112 328 .. 0.86
Alignments for each domain:
== domain 1 score: 54.7 bits; conditional E-value: 3.4e-17
TIGR01978 12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkar 109
+ ++Lkg++++++k + +i+Gp GsGk t ++++g +k ++G++ + g++l+ l+ ++ + v ++ l + l+a+++a+
MMSYN1_0030 127 ETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDK--ASQGDVFVLGSNLSLLKDSHMTK-------FRRRTVGFVFQQYNLLTNLTAKENAE 215
4789*********************************986..58**********99998765443.......35566777777777888888888888 PP
TIGR01978 110 geeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerl 206
e+l+ ++ ++e e++ ++ ++ + + sGG ++r i + + +P++ De lD + + v e + k+++e +++++++th+ ++
MMSYN1_0030 216 VGENLSSKKNGMSIDEIFETIGMKDQMHKY--PHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEyKTTVIVVTHNPNI 311
88889999999999999******9999765..5779****************************************9999998879999*******99 PP
TIGR01978 207 lelikPdvvhv 217
+ i+ +v+h+
MMSYN1_0030 312 AK-IANTVIHI 321
75.66666665 PP
>> TIGR01257 rim_protein: rim ABC transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.7 0.1 4.9e-16 3.3e-14 941 1131 .. 126 320 .. 105 326 .. 0.85
Alignments for each domain:
== domain 1 score: 48.7 bits; conditional E-value: 4.9e-16
TIGR01257 941 sgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnlda.....vrqslgmcpqhnilfhhltvaehilfyaqlk 1031
p + ++i + +++ +lg g+gktt l i++gl + g v+v g ++ d+ r+++g++ q+ l+ lt e + +l
MMSYN1_0030 126 LETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGSNLSLLKDShmtkfRRRTVGFVFQQYNLLTNLTAKENAEVGENLS 221
5678889999999**************************************998765554222224789****9999999*******999888886 PP
TIGR01257 1032 grsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrs..grtiimsthhmdeadl 1125
+ + + ++ ++e g++ + + +++sgg q+++s+a a+ + ++ dept +d r + ++l+k t+i+ th + a +
MMSYN1_0030 222 SK---KNGMSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKeyKTTVIVVTHNPNIAKI 314
55...56788999*************************************************************9865225689999999888887 PP
TIGR01257 1126 lgdria 1131
i
MMSYN1_0030 315 ANTVIH 320
665554 PP
>> TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.9 0.1 1e-14 6.9e-13 648 841 .. 125 328 .. 72 334 .. 0.74
Alignments for each domain:
== domain 1 score: 44.9 bits; conditional E-value: 1e-14
TIGR00957 648 rdepptlngltlsipegalvavvgqvgcgkssllsallaemdk.vegkvalkgs.................vayvpqq.awiqndslrenilfgkale 726
e p l+g+++++ + ++ ++g+ g gk+++l + + +dk +g v + gs v +v qq + n + +en g++l
MMSYN1_0030 125 DLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISG-LDKaSQGDVFVLGSnlsllkdshmtkfrrrtVGFVFQQyNLLTNLTAKENAEVGENLS 221
34689***************************9986655.5551578887766632222222333333333667776623567777777777777777 PP
TIGR00957 727 ekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisy 824
k+ ++ +e + g + ++ + ++sggq+qrvs+ara+ + di + d+p a+d ++++++e ++ + k t i+vth+
MMSYN1_0030 222 SKKNGMSIDEI-----FETI--GMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYK-TTVIVVTHNPNI 311
77655554432.....3444..555566777889*****************************************9998877655.578899**9888 PP
TIGR00957 825 lpqvdviivlsdgkise 841
++ +i + +g i +
MMSYN1_0030 312 AKIANTVIHIKNGIIDN 328
88888888888887765 PP
>> TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.4 0.0 2 1.3e+02 720 776 .. 34 92 .. 16 124 .. 0.64
2 ! 42.2 0.1 6.8e-14 4.5e-12 438 623 .. 127 324 .. 113 328 .. 0.77
Alignments for each domain:
== domain 1 score: -2.4 bits; conditional E-value: 2
TIGR01271 720 kapskaqateiedavsel.serklslvpedeqgeeslprsnv.fksglqlqarrrqsvl 776
k p+k+++++ e e +r++ ++p+d++ e+ + ++ k + ql + + +l
MMSYN1_0030 34 KKPKKTKTIKSEPVLLEQmDQREYIVIPNDQKFEPGIKGLKQkQKLQKQLTNKYSKDIL 92
45667777777776655515688999999999887654333302333333344444444 PP
== domain 2 score: 42.2 bits; conditional E-value: 6.8e-14
TIGR01271 438 vtpvlknislklekgqllavagstgsgkssllmmilgelepsegkikhsg......risfspqvswimpgti..kdniifglsydey.....rytsvi 522
tpvlk i++kl+k +++ + g +gsgk+++l +i g + s+g + g + s+ +++ g + + n++ l+ e +s
MMSYN1_0030 127 ETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVLGsnlsllKDSHMTKFRRRTVGFVfqQYNLLTNLTAKENaevgeNLSSKK 224
79*******************************************98766312212234455555555565433568888888887622222345667 PP
TIGR01271 523 kacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktr.ilvtsklehlkkadkill 619
+ ++e + + kd++ +sggq+ r+s+ara+ k+ d+ + d p + ld ++++e + kt i+vt + k a+ ++
MMSYN1_0030 225 NGMSIDEIFETIGMKDQMHK--YPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTvIVVTHNPNIAKIANTVIH 320
77888888889999998654..55689***************************************98765555556551677777777788888888 PP
TIGR01271 620 lheg 623
+++g
MMSYN1_0030 321 IKNG 324
8877 PP
>> TIGR00630 uvra: excinuclease ABC subunit A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.9 0.0 8e-05 0.0053 11 37 .. 130 156 .. 37 163 .. 0.86
2 ! 28.2 0.1 2e-09 1.3e-07 823 903 .. 243 321 .. 182 324 .. 0.79
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 8e-05
TIGR00630 11 nLknidvelprdklvvitGlsGsGkss 37
Lk id++l +++++vi G sGsGk +
MMSYN1_0030 130 VLKGIDIKLDKSDFIVILGPSGSGKTT 156
477788888888888888888888876 PP
== domain 2 score: 28.2 bits; conditional E-value: 2e-09
TIGR00630 823 GqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkG.ntvvviehnldviksaDyiidl 903
+ +sGG qrv +a+ L k+ + DePt L + +k+le+l ++ ++ tv+v+ hn ++ k a+ +i +
MMSYN1_0030 243 HKYPHQMSGGQQQRVSIARALAKN---PDILFADEPTGALDEEMGRKVLEILVKVNKEYkTTVIVVTHNPNIAKIANTVIHI 321
5556789**************886...567889*********************988761579999************9975 PP
>> TIGR00956 3a01205: pleiotropic drug resistance family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.3 0.9 1.4e-13 9.4e-12 726 965 .. 82 312 .. 35 317 .. 0.70
Alignments for each domain:
== domain 1 score: 41.3 bits; conditional E-value: 1.4e-13
TIGR00956 726 dieagevlkstdltdeseevneeveeekesgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLae..RvttG.vite 820
++ ++ s d+ ++ + + + ++ + +++i e++++ + +L+ +d + + ++G sG Gktt ln++++ + G v
MMSYN1_0030 82 QLTNKY---SKDILNKGHIITTQNYKP-NLDKHIIELKNVQKSYITGDLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGldKASQGdVFVL 175
222221...222222222222222222.3448999***99877766666889*******************************996224455533344 PP
TIGR00956 821 gdrlvngrkld.ssFq.RsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveL 916
g l+ ++ + F+ R++G+v qq l++ t +e + +++s k ++e+ + +++++ ++ q +r++i+ L
MMSYN1_0030 176 GSNLSLLKDSHmTKFRrRTVGFVFQQYNLLTNLTAKENAEVG------ENLSSKKNGMSIDEIFETIGMKDQMHK----YPHQMSGGQQQRVSIARAL 263
66655554443134651568*****************87754......566777777789********9887654....34567888*********** PP
TIGR00956 917 vAkPklllFlDePtsGLDsqtawsivkllrkladaGq.ailCtiHqPsai 965
+ +P +lF DePt LD ++++l k+ ++ + +++ H P +
MMSYN1_0030 264 AKNP-DILFADEPTGALDEEMGRKVLEILVKVNKEYKtTVIVVTHNPNIA 312
****.789*********************999988762567778999875 PP
>> TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.1 0.3 2.5e-09 1.6e-07 468 652 .. 130 321 .. 69 324 .. 0.68
Alignments for each domain:
== domain 1 score: 28.1 bits; conditional E-value: 2.5e-09
TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltk.peegklFyvPqrPYmslgt...lRdqiiYPdssedfkerglsdkdLeqiLee 561
+++ + +++ + ++i+GP G GK + i+++l g + ++ l + ++t + +q + ke ++L +
MMSYN1_0030 130 VLKGIDIKLDKSDFIVILGPSGSGKTTFLNIISGLDKASQGDVFVlGSNLSLLKDSHMTKFRRRTvgfVFQQYNL-LTNLTAKENAEVGENLSSKKNG 226
556677788888888899999999999999999988777744333022222222222222222220002222211.2222233333344678888889 PP
TIGR00954 562 vkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklye....lakevgitllsvshrksLwkyHeylLkl 652
+ ++++ e g d ++ + +sgG++qR+++AR + P DE t A+ ++ k+ e ke++ t++ v+h + + k + ++++
MMSYN1_0030 227 MSIDEIFETIGMKDQMHKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALDEEMGRKVLEilvkVNKEYKTTVIVVTHNPNIAKIANTVIHI 321
9999999999999*******************************************99887651111569999**********999988887776 PP
>> TIGR00618 sbcc: exonuclease SbcC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.3 0.6 1.3 84 453 536 .. 54 135 .. 28 142 .. 0.64
2 ! 5.8 0.2 0.0097 0.64 28 47 .. 142 161 .. 130 162 .. 0.86
3 ! 14.1 0.0 2.9e-05 0.0019 979 1033 .. 266 321 .. 220 324 .. 0.82
Alignments for each domain:
== domain 1 score: -1.3 bits; conditional E-value: 1.3
TIGR00618 453 qieklkkaelqelaqklkekeqqlkdkeqilkqeerkkkveekrleelqeeprplcgsllhpeaklvaldepgadtsrlergeq 536
q e +++ q+ +k ++q+ k +q+++++ + ++++ ++ + l + ++++ +++++++ g + ++++g++
MMSYN1_0030 54 QREYIVIPNDQKFEPGIKGLKQKQKLQKQLTNKYSKDILNKGHIITTQN-YKPNLDKHIIELK-NVQKSYITGDLETPVLKGID 135
5555555666666666677777777777777777776666677666666.5556677777765.45666666666666666665 PP
== domain 2 score: 5.8 bits; conditional E-value: 0.0097
TIGR00618 28 klfvicGktGaGKtsLldAI 47
+ vi G+ G+GKt+ l+ I
MMSYN1_0030 142 DFIVILGPSGSGKTTFLNII 161
6899************9877 PP
== domain 3 score: 14.1 bits; conditional E-value: 2.9e-05
TIGR00618 979 aLdsLfiDEGFGslDedsldraveiLdaike.vskmigviSHvpelreriperIkv 1033
+ d Lf DE G lDe++ +++eiL +++ ++ v+ H p+++ I +
MMSYN1_0030 266 NPDILFADEPTGALDEEMGRKVLEILVKVNKeYKTTVIVVTHNPNIAKIANTVIHI 321
5589**************************98888899999*99988766666655 PP
>> TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.3 0.2 6.3e-05 0.0042 441 472 .. 145 175 .. 142 183 .. 0.79
2 ? -0.7 0.0 1.1 69 627 680 .. 259 312 .. 257 323 .. 0.87
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 6.3e-05
TIGR00929 441 lIfGptgsGKTvllnfllaqlqkykpltiiaf 472
+I+Gp+gsGKT++ln++ + l k+++ +++++
MMSYN1_0030 145 VILGPSGSGKTTFLNII-SGLDKASQGDVFVL 175
69*************75.56666666677765 PP
== domain 2 score: -0.7 bits; conditional E-value: 1.1
TIGR00929 627 ieealdgrrfliiiDEawkllgdpvfeakikeilktlRKaNgivvlatQsindl 680
i +al + + ++++DE l++++ ++ + ++k+ +++ + v++ t ++n +
MMSYN1_0030 259 IARALAKNPDILFADEPTGALDEEMGRKVLEILVKVNKEYKTTVIVVTHNPNIA 312
67889999****************999999999999999999999999988755 PP
>> TIGR03499 FlhF: flagellar biosynthesis protein FlhF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.2 1.6 5.7e-05 0.0038 99 213 .. 28 156 .. 2 159 .. 0.57
Alignments for each domain:
== domain 1 score: 15.2 bits; conditional E-value: 5.7e-05
TIGR03499 99 aqeaekkleeaeeelrkelkalkellekqlselal...........eeedperakllkklleagvseelarelleklke.kedaeeareklreaLekk 184
++ ++ k++++++++++e l+++ +++ + +++++ +++l++k + +++ ++ + + ++ +++ e+++ ++++++
MMSYN1_0030 28 EEMKSSKKPKKTKTIKSEPVLLEQMDQREYIVIPNdqkfepgikglKQKQKLQKQLTNKYSKDILNKGHIITTQNYKPNlDKHIIELKNVQKSYITGD 125
12222222222233333333333333333332222333335656677788888888888888888888888888888888888888899999999999 PP
TIGR03499 185 lsvkkee..deilekggviaLvGptGvGKTT 213
l++ + d l+k i+ +Gp G+GKTT
MMSYN1_0030 126 LETPVLKgiDIKLDKSDFIVILGPSGSGKTT 156
87655441145566777*************9 PP
>> TIGR02814 pfaD_fam: PfaD family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.3 0.0 4.7e-05 0.0031 281 353 .. 165 241 .. 116 259 .. 0.86
Alignments for each domain:
== domain 1 score: 14.3 bits; conditional E-value: 4.7e-05
TIGR02814 281 ayaPaaDmfelGvklqvlkkgvlfparankLYelyrrydsleeldakvraelekklfkr....sldevweetkayye 353
+ a +D+f lG++l lk + + r + ++++y+ l +l ak+ ae+ ++l ++ s+de++e++ +
MMSYN1_0030 165 DKASQGDVFVLGSNLSLLKDSHMTKFRRRTVGFVFQQYNLLTNLTAKENAEVGENLSSKkngmSIDEIFETIGMKDQ 241
56889*******************************************99998877654233379999998765544 PP
>> TIGR00041 DTMP_kinase: dTMP kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.3 0.0 0.00035 0.023 3 27 .. 140 164 .. 138 175 .. 0.82
2 ? -0.8 0.0 3.7 2.5e+02 27 61 .. 262 298 .. 250 323 .. 0.67
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 0.00035
TIGR00041 3 kgkfiviEGidGaGKTtqlellkkl 27
k+ fivi G G+GKTt l+++ l
MMSYN1_0030 140 KSDFIVILGPSGSGKTTFLNIISGL 164
678****************998755 PP
== domain 2 score: -0.8 bits; conditional E-value: 3.7
TIGR00041 27 llkeeglkvlltrEPggt...klgekirelllteneep 61
l + + ++l+ EP+g ++g+k+ e+l++ n+e
MMSYN1_0030 262 ALAK-NPDILFADEPTGAldeEMGRKVLEILVKVNKEY 298
4444.357788888886422267777777766655554 PP
>> TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.9 0.0 0.00035 0.023 346 381 .. 126 161 .. 98 189 .. 0.82
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 0.00035
TIGR03925 346 leesdlapvaldfaeephllvlGdsesGktallrai 381
le l+ + ++++++ +++lG s+sGkt++l+ i
MMSYN1_0030 126 LETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNII 161
555578889999*********************865 PP
>> TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.6 0.1 0.00059 0.039 2 21 .. 142 161 .. 141 175 .. 0.83
Alignments for each domain:
== domain 1 score: 11.6 bits; conditional E-value: 0.00059
TIGR02322 2 rlilvvGpsGaGKDtlldla 21
+i+++GpsG+GK t l+
MMSYN1_0030 142 DFIVILGPSGSGKTTFLNII 161
589************99876 PP
>> TIGR00634 recN: DNA repair protein RecN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.1 0.2 4.8 3.2e+02 306 324 .. 73 91 .. 37 111 .. 0.78
2 ? -2.6 0.1 6.7 4.4e+02 16 42 .. 134 161 .. 130 165 .. 0.77
3 ? 11.4 0.0 0.00039 0.026 483 522 .. 287 328 .. 241 335 .. 0.81
Alignments for each domain:
== domain 1 score: -2.1 bits; conditional E-value: 4.8
TIGR00634 306 ieerlaeikrLkrKygasv 324
+++++ k+L+ Ky +++
MMSYN1_0030 73 LKQKQKLQKQLTNKYSKDI 91
5667777778888887765 PP
== domain 2 score: -2.6 bits; conditional E-value: 6.7
TIGR00634 16 levefer.gltvltGETGaGKsividal 42
+++++++ + v+ G G+GK+ ++ +
MMSYN1_0030 134 IDIKLDKsDFIVILGPSGSGKTTFLNII 161
66777763699**********9887655 PP
== domain 3 score: 11.4 bits; conditional E-value: 0.00039
TIGR00634 483 iakkLaklse..kkQvlvvTHlpqvaaladahlkvekevlde 522
+ + L k+ + k+ v+vvTH p +a +a++ ++++ ++d+
MMSYN1_0030 287 VLEILVKVNKeyKTTVIVVTHNPNIAKIANTVIHIKNGIIDN 328
555566665522567*********************999997 PP
>> TIGR00376 TIGR00376: putative DNA helicase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.0 3.3 3.2 2.1e+02 265 332 .. 15 87 .. 2 109 .. 0.60
2 ? 13.4 0.8 7e-05 0.0047 139 195 .. 101 161 .. 73 180 .. 0.71
Alignments for each domain:
== domain 1 score: -2.0 bits; conditional E-value: 3.2
TIGR00376 265 ekideliee....rekklkpskqkrrglsdiklLrkalkkreargik.klkiasmvevietnksidrllkklk 332
e+i+ + ++ e k ++++k + + + +L ++ +re+ i+ ++k ++ +++++++++l++ +
MMSYN1_0030 15 EQIQPISKKdpdfEEMKSSKKPKKTKTIKSEPVLLEQMDQREYIVIPnDQKFEPGIKGLKQKQKLQKQLTNKY 87
3333333331111133444555666667777788888999999999625677778888888888888777665 PP
== domain 2 score: 13.4 bits; conditional E-value: 7e-05
TIGR00376 139 glekpskisevedlqaid.....knLnesqkeAvkfAvsskdlaliHGPpGtGktrtlvEli 195
+ kp+ + +++l++++ L++ + +++ + ++d+++i GP G Gkt+ ++i
MMSYN1_0030 101 QNYKPNLDKHIIELKNVQksyitGDLETPVLKGIDIKLDKSDFIVILGPSGSGKTTF-LNII 161
344455567777888887555657899999************************964.4555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (344 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 357 (0.0795455); expected 89.8 (0.02)
Passed bias filter: 202 (0.0450089); expected 89.8 (0.02)
Passed Vit filter: 101 (0.0225045); expected 4.5 (0.001)
Passed Fwd filter: 68 (0.0151515); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 68 [number of targets reported over threshold]
# CPU time: 0.65u 0.19s 00:00:00.84 Elapsed: 00:00:00.34
# Mc/sec: 1452.94
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0030 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0033 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0033.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0033/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0033 [L=1052]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0 1432.3 122.0 0 1432.1 122.0 1.0 1 TIGR04512 Mycopla_NOT_gsn: STREFT protein
1.5e-10 38.1 36.1 1.5e-10 38.1 36.1 3.5 3 TIGR04547 Mollicu_LP: MOLPALP family lipoprotein
Domain annotation for each model (and alignments):
>> TIGR04512 Mycopla_NOT_gsn: STREFT protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1432.1 122.0 0 0 1 1045 [] 2 1050 .. 2 1050 .. 0.99
Alignments for each domain:
== domain 1 score: 1432.1 bits; conditional E-value: 0
TIGR04512 1 lKklKknkkWviiilvllvvlssFliFiksyvdskkqklvnkiqnYvkassYavkskiLketEnlnedYvnqklakkkildEfgsdFiWkpnnskt 96
lK++K+nk+Wv+ii+v++++lssF+iF+ksyvds+kqk+vnk+qnYv+assYav+s+iLketEnlnedY+nqk++kk++ldEf++dFiW+pnn+kt
MMSYN1_0033 2 LKFIKNNKWWVAIISVFAIFLSSFGIFAKSYVDSNKQKIVNKVQNYVQASSYAVQSRILKETENLNEDYLNQKIGKKSLLDEFSNDFIWRPNNTKT 97
69********************************************************************************************** PP
TIGR04512 97 tsedtisdllktYFGkstdvleknlkilykkdnnklkdiensksgeivPknidklisisksaekflnglssslasLGlsllqknvlknrdevnaik 192
ts+dtisdl++tYFG+st+vl+knl+i+y k+nn++k+iensk gei+P+nid+l+sisks+ekflng+++slasLGls++q++vl+nr++ n+++
MMSYN1_0033 98 TSTDTISDLWNTYFGSSTNVLDKNLQIQY-KNNNEYKNIENSK-GEITPQNIDFLFSISKSLEKFLNGFAPSLASLGLSFIQNTVLNNREKSNFKN 191
*****************************.9************.**************************************************** PP
TIGR04512 193 nndilkklvdviennkellsllakllisksldkdfYknLtvkqllnKnlnkiaevitnkkelnk..deDklpedldkllleevldivkeefae.kk 285
++d+l+k++d+iennk+l+s+l+k+l++k+l+kd+Y+nLtv+q+l+Kn+n+ia++i+n++e++k ++Dk+pe+ldkll+e++ld+++e+++e ++
MMSYN1_0033 192 YKDGLNKFADIIENNKNLFSYLGKILTPKQLEKDYYNNLTVQQALIKNINQIAAAISNDQEFSKevETDKIPEALDKLLTELGLDSLSEIIGElIN 287
***************************************************************9999***************************** PP
TIGR04512 286 kkeileklkkifnkiknvFnkkkf..........lkkilpeLirYlksElfFalYYvvneelkniseLlkqkveaekFkaltnnkldlgvllkGls 371
+++ ++l+++fnkikn+F+ k+f l++i+p+L++Yl+sE+fF+lYY++n+++k+++eLl qkv+++kF altnnkldlg+ll+G++
MMSYN1_0033 288 SQNGSTNLTQLFNKIKNIFTLKNFeklkakalelLDRITPHLATYLYSEIFFGLYYAANQHIKDPNELLVQKVDSNKFLALTNNKLDLGILLNGIE 383
************************************************************************************************ PP
TIGR04512 372 kvlkdkksfeRfldFiFKrvdkskiyfdsenipsniGtgnLlfDlinavqkkllsvsnllktlikkieeyieknkekikklieekitsllkkklpe 467
++lkdkk feRf++FiFKr+d++ki+++ +ni+sn+GtgnL++Dl+n++++kl+ +sn+l++lik++e i+ n+++i k+i+eki+s++k+klp+
MMSYN1_0033 384 VILKDKKGFERFYNFIFKRFDENKIFNNLNNISSNKGTGNLTYDLLNWLEDKLNGFSNVLNILIKFAE--IALNDSNIIKTIQEKIVSFIKEKLPK 477
********************************************************************..************************** PP
TIGR04512 468 nskelgkakvefendkleisievkllltwlnvakakinlFgkkGlitklinilksikssisellstisnylKeilyrdkekkldlkkafenlaeli 563
+ g++kvef+ +++eis+++ + t+l+ +k+nlFgk+Gl++++inilks+++++++l++++++y+K+++y+++++kl++ l++li
MMSYN1_0033 478 --ISSGDWKVEFKFESIEISLSFLGIRTPLY---LKANLFGKAGLLSQVINILKSLNNFVDYLSNWFFKYIKNTFYLKSSEKLSVVL----LQKLI 564
..999**********************9988...78************************************************999....***** PP
TIGR04512 564 kvlnnlledqkvlninleikelvlflglgpkniakiksiYdilnLPnaelykksvlgslikkvaekkikkvleklkkvlekLkkykFisdeeklke 659
+ ++ ll+d+k+ i+++i++ v++++ ++k +++ik+iYd+l+LP y+k++l+ l+ k aek+ik+++eklk++le+Lk+y+Fi++++klke
MMSYN1_0033 565 NDIDVLLKDNKN--IYITIAQDVISVWPFGKPDVEIKTIYDFLTLP----YNKEFLNGLVYKRAEKDIKPAVEKLKTFLESLKTYNFITESTKLKE 654
**********99..9999999*************************....********************************************** PP
TIGR04512 660 qfpkYleklikflekyekneilkydLiesLYekdknfitdftkkwaeFlvkdkedednpllPivraitkdkkekieslediknkleskgeklikke 755
qfp+Yle+l+k+++kye+ ei++++L++sLYe+ n+i+df+ kw+eFl+kd+++ednp+lPi+r+i+kd ek+e+l +iknk+++k+++l++k+
MMSYN1_0033 655 QFPQYLENLSKYIKKYEEIEITDFNLLNSLYEG--NIISDFALKWIEFLTKDISKEDNPVLPILRTIFKD--EKFEKLGQIKNKWTTKISELANKI 746
*********************************..***********************************..************************ PP
TIGR04512 756 elfknisklrnikielpkellkalgleelndlkitelleqiskyiedylkknpnkviglnissiGkiLkaLtikvtvkyk..........eknskk 841
++f+ni+k++niki+lp++llk++gle+ln+++i++l++++++y++dyl++npnkviglnissiGkiL+aLtikv+v+y+ +k++ k
MMSYN1_0033 747 KEFENITKIKNIKINLPEDLLKQFGLESLNTQTIYQLIQTLTTYFNDYLSINPNKVIGLNISSIGKILTALTIKVSVEYNtrnkdknflyNKDPLK 842
************************************************************************************************ PP
TIGR04512 842 vkdKnilkaladslDshdnksdeeedi...rpkesyynWdkielkldgkdkk.tidlkklkedssysPLhlLlGidldktkylkdsigyslstLiG 933
+k+K++lkala+++D+hdn sd+ +i rp+esyynWdki+++++g+dk+ ti++++lke++sysPLh+LlGid+dkt+y+kds+gy+++tL+G
MMSYN1_0033 843 DKSKTLLKALAYGFDTHDNYSDNIVNIsniRPSESYYNWDKIDFYINGSDKPfTINRTNLKEEQSYSPLHILLGIDVDKTSYIKDSLGYVFGTLFG 938
**********************99988888****************************************************************** PP
TIGR04512 934 GlkanDenYklsienkksvisildvfnyvLdkkdkeLkkkEyqkagqYYkkdaWstklissneneikYqLiRtktsnteeskklGkkFevkLtknk 1029
Gl+a+D+nYklsienk++++sil+vfnyvLdkkdk+Lkk+E+q+a+qYY+k+aWstk+++s+enei+YqLiR+ktsnt++sk+lG+kFevkL+knk
MMSYN1_0033 939 GLSASDPNYKLSIENKTDATSILNVFNYVLDKKDKQLKKQEDQIATQYYDKTAWSTKILNSSENEINYQLIRLKTSNTDKSKQLGTKFEVKLLKNK 1034
************************************************************************************************ PP
TIGR04512 1030 nnsYWkisqviAldYk 1045
nnsYW+i+++iAldYk
MMSYN1_0033 1035 NNSYWTINKIIALDYK 1050
***************8 PP
>> TIGR04547 Mollicu_LP: MOLPALP family lipoprotein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.1 36.1 6.8e-14 1.5e-10 6 302 .. 13 305 .. 11 326 .. 0.72
2 ? -7.1 12.8 2 4.5e+03 83 206 .. 372 492 .. 345 498 .. 0.64
3 ! 4.7 70.3 0.00081 1.8 386 805 .. 558 1044 .. 518 1045 .. 0.77
Alignments for each domain:
== domain 1 score: 38.1 bits; conditional E-value: 6.8e-14
TIGR04547 6 aiLgalslvasSsltvvACtkkekedkseynnslknlqgiasllAksiILaDqngisldylkntfknkklkdllkklnlkldendksldkkstleell 103
ai++ ++++ sS + A +++++ +k +++n ++n+ +++s++ +s IL ++++ dyl++++++k+l d ++++ + n+ +++++ t+++l
MMSYN1_0033 13 AIISVFAIFLSSF-GIFAKSYVDS-NKQKIVNKVQNYVQASSYAVQSRILKETENLNEDYLNQKIGKKSLLDEFSNDFIW-RPNNTKTTSTDTISDLW 107
899*********9.**********.*******************************************************.9**************** PP
TIGR04547 104 kryFgkdsylkktelddninldgkkgtsngllsevlkegllgtktkkisesiekiLs.lisglstlllgslfss..lgsllksfikkdktelislllk 198
+ yFg+ ++ +++l+ + +++ + ++ ++ e+++ + + + +is+s+ek L+ ++++l++l l s +++ l+ ks +k+ ++ +++++
MMSYN1_0033 108 NTYFGSSTNVLDKNLQIQYKNNNEYKNIENSKGEITP--QNIDFLFSISKSLEKFLNgFAPSLASLGL-SFIQNtvLNNREKSNFKNY-KDGLNKFAD 201
*********7776665555555554444444444555..45556789999999999746777777777.3333324455555555444.888899999 PP
TIGR04547 199 liltnsklietinkfid.kidvnkkykdlslenldnallisltngiglilnkkdfkevelstdnd......ikeslkkaskalvdsiqkkdessnkel 289
+i +n++l + + k+ + k + +y++l +++ + ++++ +i ++++ keve++ + ++ l+++s+++ + i++++ s+
MMSYN1_0033 202 IIENNKNLFSYLGKILTpKQLEKDYYNNLTVQQALIKNINQIAAAIS--NDQEFSKEVETDKIPEaldkllTELGLDSLSEIIGELINSQNGST---- 293
9*******999988744144444555555554444333333333332..233333444443322254555566667777777777777777776.... PP
TIGR04547 290 kdienvlkalael 302
++++++++++++
MMSYN1_0033 294 -NLTQLFNKIKNI 305
.666666666554 PP
== domain 2 score: -7.1 bits; conditional E-value: 2
TIGR04547 83 nlk....ldendksldkkstleellkryFgkdsylkktelddninldgk.kgtsngllsevlkegllgtktkkisesiekiLslisglstlllg..sl 173
+l+ l+ + l++k+ +e++ + F + +++ +n+n+ ++ kgt+n + ++l++k++ +s+ +L+++ + + + l+ ++
MMSYN1_0033 372 KLDlgilLNGIEVILKDKKGFERFYNFIFKRFDE---NKIFNNLNNISSnKGTGNLTYD-L--LNWLEDKLNGFSN----VLNILIKFAEIALNdsNI 459
4444454444455566677777777766665554...3344666666552445554443.3..3588888877776....566666666666665467 PP
TIGR04547 174 fsslgsllksfikkdktelislllkliltnskl 206
++++ +++ sfik++ +++ s k ++ +++
MMSYN1_0033 460 IKTIQEKIVSFIKEKLPKISSGDWKVEFKFESI 492
788999999999988788888888887776664 PP
== domain 3 score: 4.7 bits; conditional E-value: 0.00081
TIGR04547 386 ynlQKlla...iLFgtekevey.........ssetknkknakefykskkassgtnllnkiiesllnkelsllveilikslkslkiktkenf.kkli 468
lQKl++ +L+ ++k++ + ++ k++++ k y++ + + ++ln ++ + ++k++++ ve+l l+slk ++ ++++
MMSYN1_0033 558 VLLQKLINdidVLLKDNKNIYItiaqdvisvWPFGKPDVEIKTIYDFLTLPYNKEFLNGLVYKRAEKDIKPAVEKLKTFLESLKTY--NFItESTK 651
55888887666888888888778888888889999999999999999999999999999999999999999999999988888844..44325677 PP
TIGR04547 469 ksdllvklipsifeslanqgkl.ikdslkkilellkklfiee.vkkiaefllskilekilkkNlfksLYsGdffkeisklikkl...iekladkik 559
+++++ + ++++ + +++ +++ i+d ++ +++l + +i++ + k +efl++ i+++ +N+ + + + f+ e +++++++ ++ + ++
MMSYN1_0033 652 LKEQFPQYLENLSKYIKKYEEIeITD-FNLLNSLYEGNIISDfALKWIEFLTKDISKE---DNPVLPILRTIFKDEKFEKLGQIknkWTTKISELA 743
89999999999999999999995555.5999999995555550556999988665544...38888888888888888888888555677777777 PP
TIGR04547 560 nsvdeifgndkplNlktllttpLd...kllekkkedkkqf.lkglkkkSiteiiddlssdfevdeneklkdlesyginlkdikeLvnkifinytyk 651
n+++e+ N+ ++ +++++ +ll+ qf l+ l++++i+++i +l+++f+ + ++ ++ g+n+++i ++++++ i+ ++
MMSYN1_0033 744 NKIKEFE------NITKIKNIKINlpeDLLK-------QFgLESLNTQTIYQLIQTLTTYFNDYLS--INPNKVIGLNISSIGKILTALTIKVSVE 824
7777766......777777777741112233.......332799*****************97775..4556678***************777666 PP
TIGR04547 652 dk...............eegketklnlislllenpkk........................................................... 673
++ + ++k
MMSYN1_0033 825 YNtrnkdknflynkdplK--------------DKSKTllkalaygfdthdnysdnivnisnirpsesyynwdkidfyingsdkpftinrtnlkeeq 906
664455666666544331..............2222244444444446666888888888889999999*************************** PP
TIGR04547 674 ....aleiLGitkdknkfkegSlldalsnkffnpnknkklva.....kdtlqelikvlakiiknlnia.kslkdefneeflnqknwkfeftfskkn 759
+ ++LGi+ dk ++Sl ++ ++f+ ++ + k +++v++ ++++++++ k+ +d+++ ++ ++ w++++ +s++n
MMSYN1_0033 907 syspLHILLGIDVDKTSYIKDSLGYVFGTLFGGLSASDPNYKlsienKTDATSILNVFNYVLDKKDKQlKKQEDQIATQYYDKTAWSTKILNSSEN 1002
*******************************98774444333445545555678999999999999654667788889999999999999999988 PP
TIGR04547 760 ksnqkksiksqtllvkyknkktnaktkYefkysRdsknskFkfkki 805
+n +l++ ++k ++ tk+e+k ++++ns++ + ki
MMSYN1_0033 1003 EINY----QLIRLKTSNTDKSKQLGTKFEVKLLKNKNNSYWTINKI 1044
8888....45556666677778899******************998 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1052 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 393 (0.0875668); expected 89.8 (0.02)
Passed bias filter: 121 (0.0269608); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 4443.29
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0033 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0034 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0034.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0034/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0034 [L=1789]
Description: efflux ABC transporter, permease protein 2=Generic Efflux
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1789 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 389 (0.0866756); expected 89.8 (0.02)
Passed bias filter: 56 (0.0124777); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.25
# Mc/sec: 10276.32
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0034 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0039 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0039.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0039/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0039 [L=648]
Description: ftsH peptidase? 2=Generic Protein export
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.4e-203 672.9 4.0 8.7e-203 672.5 4.0 1.2 1 TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
5.8e-80 267.1 2.5 9.2e-80 266.4 2.5 1.3 1 TIGR01242 26Sp45: 26S proteasome subunit P45 family
1.5e-72 243.0 6.3 3.7e-72 241.7 6.3 1.6 1 TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
5.5e-41 138.8 0.2 9.9e-41 137.9 0.2 1.3 1 TIGR03689 pup_AAA: proteasome ATPase
3.9e-07 27.4 0.1 8.4e-07 26.3 0.0 1.5 2 TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subu
5.9e-06 23.5 0.0 1.3e-05 22.4 0.0 1.6 1 TIGR00635 ruvB: Holliday junction DNA helicase RuvB
2.1e-05 21.2 0.0 4.5e-05 20.2 0.0 1.5 1 TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
0.00023 18.2 1.5 0.00045 17.3 0.1 2.2 2 TIGR02881 spore_V_K: stage V sporulation protein K
0.00027 17.5 0.0 0.00027 17.5 0.0 1.9 2 TIGR00763 lon: endopeptidase La
0.003 14.5 0.0 0.003 14.5 0.0 3.1 4 TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
------ inclusion threshold ------
0.01 12.4 3.2 0.044 10.3 0.0 2.2 2 TIGR00368 TIGR00368: Mg chelatase-like protein
0.011 11.8 6.5 0.047 9.8 0.0 3.0 3 TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subun
0.037 11.6 0.0 0.08 10.5 0.0 1.5 1 TIGR00678 holB: DNA polymerase III, delta' subunit
0.12 10.3 7.9 0.13 10.2 0.0 3.6 3 TIGR02173 cyt_kin_arch: putative cytidylate kinase
Domain annotation for each model (and alignments):
>> TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 672.5 4.0 2.7e-205 8.7e-203 3 494 .. 119 603 .. 114 605 .. 0.95
Alignments for each domain:
== domain 1 score: 672.5 bits; conditional E-value: 2.7e-205
TIGR01241 3 levllsllplilllvglfllflrqakgaggs.rifslgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPG 99
l+ ll +l+lil+ +glf+++++ ++++g+ f++gk ka+ + +v+f+dvaGi+e+k elve+vd+Lk+p k+++ Ga+ PkGvl+ GpPG
MMSYN1_0039 119 LSSLLPMLILILFYIGLFYFMAKGGAAGAGAnGLFGMGKNKARREK---SNVKFSDVAGIEEEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPG 213
334455555566677788888877555444437********99755...59*********************************************** PP
TIGR01241 100 tGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegviv 197
tGktLlakavaGea+v+ffsi+Gs+f emfvGvGasrvr++f++akk+aP+iifiDeiDavGrkr+ ++g+g eqtLnqlLve+DGfetn g+iv
MMSYN1_0039 214 TGKTLLAKAVAGEANVSFFSIAGSEFEEMFVGVGASRVREMFNEAKKAAPAIIFIDEIDAVGRKRNSAIGTGT--NEQTLNQLLVELDGFETNSGIIV 309
*******************************************************************999976..68********************* PP
TIGR01241 198 laatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdr 295
+aatnr dvLD+aLlrPGrfDr ++v++Pd+k+re+ilk+ha+++k+++++d +++a+rtpGfsGa+l+n++neaa+l +r++k+ + ++e++ea+dr
MMSYN1_0039 310 MAATNRVDVLDPALLRPGRFDRVIQVSLPDIKEREQILKLHARNKKIDPSIDWHRIAERTPGFSGAQLENVLNEAAILMVREGKTVIGINEIDEAIDR 407
************************************************************************************************** PP
TIGR01241 296 viaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGqalGvtlslPeedklllskkellakiavllgGrvaeeiifg..evttGa 391
v+ G++kksr+++ ++k++v+yhe+Ghal+gl +++a+kv+kvtiiprG+a+G+t+++P++++l+ sk++l+a+ia +lgGr+aeei fg +vttGa
MMSYN1_0039 408 VVGGPAKKSRAMTMHDKEIVSYHESGHALIGLKLESASKVQKVTIIPRGNAGGYTIMTPKDETLFSSKTDLYAMIAGYLGGRAAEEIKFGkdNVTTGA 505
******************************************************************************************999***** PP
TIGR01241 392 snDlkkatkiaramvtelGmseklgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketieke 489
++D+ kat iar+mv ++Gmse lg ++ + ++e++ ++ e +yse+ta++iD+ev+ri+ee+yk a ++++e++e+lella++L eti++e
MMSYN1_0039 506 HDDFDKATAIARRMVMQFGMSE-LGITKFLTMADEAYGKT----EGSYSEKTAAKIDAEVERILEESYKLAIKVISENMETLELLAESLRVLETITAE 598
*********************9.****9998887777655....699*************************************************** PP
TIGR01241 490 elkel 494
+++ +
MMSYN1_0039 599 QIDYI 603
**987 PP
>> TIGR01242 26Sp45: 26S proteasome subunit P45 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 266.4 2.5 2.9e-82 9.2e-80 114 363 .. 162 408 .. 155 409 .. 0.98
Alignments for each domain:
== domain 1 score: 266.4 bits; conditional E-value: 2.9e-82
TIGR01242 114 eerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfkla 211
e+ +v++ d+ G+e++ e+ e v+ lk+p ++ G pkGvl+ GppGtGktllakava e+n +f + gse+ + ++G Ga+ vre+f+ a
MMSYN1_0039 162 REKSNVKFSDVAGIEEEKSELVELVDY-LKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAGSEFEEMFVGVGASRVREMFNEA 258
699********************9986.9********************************************************************* PP
TIGR01242 212 kekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkm 309
k+ ap+iifideida++ kr + +G e +tl qll eldGf++ + v+aatnr+d+ldpallrpGrfdr+i+v lpd++ r +ilk+h+r+
MMSYN1_0039 259 KKAAPAIIFIDEIDAVGRKRNSAIGTGTNE--QTLNQLLVELDGFETNSGIIVMAATNRVDVLDPALLRPGRFDRVIQVSLPDIKEREQILKLHARNK 354
********************9998888876..8***************************************************************** PP
TIGR01242 310 klaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
k+ + +d + +a+ t G+sGa+l + ea + +re ++++ ++++ +a+++v
MMSYN1_0039 355 KIDPSIDWHRIAERTPGFSGAQLENVLNEAAILMVREGKTVIGINEIDEAIDRV 408
****************************************************98 PP
>> TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 241.7 6.3 1.2e-74 3.7e-72 446 692 .. 163 408 .. 159 630 .. 0.75
Alignments for each domain:
== domain 1 score: 241.7 bits; conditional E-value: 1.2e-74
TIGR01243 446 evpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkar 543
e nvk++d+ g+ee k el e v++ lk++ + g r pkgvl+ gppgtgktllakava e++ f ++ g e +vg ++re+f+ a+
MMSYN1_0039 163 EKSNVKFSDVAGIEEEKSELVELVDY-LKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAGSEFEEMFVGVGASRVREMFNEAK 259
5679*********************8.9********************************************************************** PP
TIGR01243 544 qaapaiifldeidaiapargadlseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslpla 641
+aapaiif+deida+ +r + +++ ++ +nqll eldg+e ns+++v+aatnr d+ldpallrpgr+dr+i v pd + r +i+k+h+r+ ++
MMSYN1_0039 260 KAAPAIIFIDEIDAVGRKRNSAIGTGTNEQTLNQLLVELDGFETNSGIIVMAATNRVDVLDPALLRPGRFDRVIQVSLPDIKEREQILKLHARNKKID 357
************************************************************************************************** PP
TIGR01243 642 edvdleelakktegytgadieavvreaalaalresvksvakekleaeekei 692
+d +++a++t g++ga++e v eaa++ +re + + +++ + +
MMSYN1_0039 358 PSIDWHRIAERTPGFSGAQLENVLNEAAILMVREGKTVIGINEIDEAIDRV 408
*********************************987554444444443333 PP
>> TIGR03689 pup_AAA: proteasome ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 137.9 0.2 3.1e-43 9.9e-41 175 378 .. 163 351 .. 157 370 .. 0.93
Alignments for each domain:
== domain 1 score: 137.9 bits; conditional E-value: 3.1e-43
TIGR03689 175 evPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeter 272
e +v ++d+ G++++ ++ + v+ +++++ y + ++PkGvl+ GPPG+Gktl+akava ea+ f++i G e+ + +vG
MMSYN1_0039 163 EKSNVKFSDVAGIEEEKSELVELVDY-LKQPAKYASAGARAPKGVLMEGPPGTGKTLLAKAVAG----------EANVSFFSIAGSEFEEMFVGVGAS 249
67799**********99999888885.7899*******************************95..........3456799***************** PP
TIGR03689 273 qirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaa 370
++r +f+ a+++a P ++f+de+d++ r r s + + + + qll eldG e+ + +iv+ a+nr+d++dPa+lrPGr+d i+++ Pd ++
MMSYN1_0039 250 RVREMFNEAKKAA----PAIIFIDEIDAVGRKRNSAIGTGTNEQTLNQLLVELDGFETNSGIIVMAATNRVDVLDPALLRPGRFDRVIQVSLPDIKER 343
*******998876....9******************************************************************************** PP
TIGR03689 371 adilakyl 378
++il+ +
MMSYN1_0039 344 EQILKLHA 351
***98775 PP
>> TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.3 0.0 2.6e-09 8.4e-07 120 203 .. 206 282 .. 201 300 .. 0.80
2 ? -4.0 0.0 4.2 1.3e+03 157 193 .. 371 403 .. 366 408 .. 0.63
Alignments for each domain:
== domain 1 score: 26.3 bits; conditional E-value: 2.6e-09
TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksenasi 203
+l+ Gp G+Gktlla+++a e +v f + a + e +vG + ++ + +ka ii+ideid + rk ++ +i
MMSYN1_0039 206 VLMEGPPGTGKTLLAKAVAGEANVSF-FSIAGSEFEEMFVGVGASRV-----REMFNEAKKAAPAIIFIDEIDAVGRKRNS-AI 282
6788********************98.46677888999***877664.....444456789****************9754.44 PP
== domain 2 score: -4.0 bits; conditional E-value: 4.2
TIGR00382 157 GyvGedvenillkllqaadydvekaekGiiyideidk 193
G+ G +en+l + a + + + k +i i+eid
MMSYN1_0039 371 GFSGAQLENVLNE----AAILMVREGKTVIGINEIDE 403
6667777777653....44444455677777777775 PP
>> TIGR00635 ruvB: Holliday junction DNA helicase RuvB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.4 0.0 4e-08 1.3e-05 28 97 .. 201 278 .. 183 353 .. 0.84
Alignments for each domain:
== domain 1 score: 22.4 bits; conditional E-value: 4e-08
TIGR00635 28 ealdhvllyGPPGlGkttlakiiakelgvklkitsgpalek......pgDlaailtaleeg..dvlfiDeihrlskav 97
a vl+ GPPG Gkt lak +a e +v+ ++g ++e ++ + ++ + ++ ++fiDei ++ ++
MMSYN1_0039 201 RAPKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAGSEFEEmfvgvgASRVREMFNEAKKAapAIIFIDEIDAVGRKR 278
566779*******************************9997333333456666666665542379******9998765 PP
>> TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.2 0.0 1.4e-07 4.5e-05 311 429 .. 202 317 .. 164 338 .. 0.70
Alignments for each domain:
== domain 1 score: 20.2 bits; conditional E-value: 1.4e-07
TIGR03922 311 rskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelid...kaLggvlFlDEayaLvekrdgakdd.fGleaid 404
k +l+ GPPGtGkt +A++va + + + + +++ ++g + + e+ + ka ++F+DE+ a+ kr+ a + + ++
MMSYN1_0039 202 APKGVLMEGPPGTGKTLLAKAVAGE----A---NVSFFSIAGSEFEEMFVGVGASRVREMFNeakKAAPAIIFIDEIDAVGRKRNSAIGTgTNEQTLN 292
4567899*********999998754....3...34556677788888999999999999987222456789*********9998877554155678** PP
TIGR03922 405 tLLarlEndRdrlvviiAGYekdlD 429
+LL+ l+ + +i+ ++ +D
MMSYN1_0039 293 QLLVELDGFETNSGIIVMAATNRVD 317
****998766555555544455555 PP
>> TIGR02881 spore_V_K: stage V sporulation protein K
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.3 0.1 1.4e-06 0.00045 4 127 .. 168 284 .. 165 352 .. 0.77
2 ? -1.8 0.2 0.96 3.1e+02 110 148 .. 536 574 .. 515 626 .. 0.63
Alignments for each domain:
== domain 1 score: 17.3 bits; conditional E-value: 1.4e-06
TIGR02881 4 eleklvGleevkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi 101
+++ + G+ee k+ + e+ + + k + +g +a k vl ++G PGtGkt +a+ +a e nv + + +++ ++G a ++re+
MMSYN1_0039 168 KFSDVAGIEEEKSELVELVDYLKQPAKYASAGARAPKGVL---MEGPPGTGKTLLAKAVAG---EANV----SFFSIAGSEFEEMFVGVGASRVREMF 255
678899****************9999999*9999999875...79***********99985...6666....45566667777789*********985 PP
TIGR02881 102 ...kkalGGvlfideayslarGGekdfGk 127
kka ++fide ++ r + G
MMSYN1_0039 256 neaKKAAPAIIFIDEIDAVGRKRNSAIGT 284
33389999********9999987777765 PP
== domain 2 score: -1.8 bits; conditional E-value: 0.96
TIGR02881 110 fideayslarGGekdfGkeaidtlvkemedkreelvlil 148
+ deay + G + id+ v + +++ +l + +
MMSYN1_0039 536 MADEAYGKTEGSYSEKTAAKIDAEVERILEESYKLAIKV 574
457777777776666666667766666655555544433 PP
>> TIGR00763 lon: endopeptidase La
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.5 0.0 8.4e-07 0.00027 355 435 .. 205 277 .. 169 294 .. 0.80
2 ? -1.7 1.6 0.51 1.6e+02 65 170 .. 551 635 .. 500 648 .] 0.42
Alignments for each domain:
== domain 1 score: 17.5 bits; conditional E-value: 8.4e-07
TIGR00763 355 ilclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgss 435
+ + GPPG GKt lak++A n f+ + G + + +vG ++ + ++++k++ P +i++DEiD +g++
MMSYN1_0039 205 GVLMEGPPGTGKTLLAKAVAGEANVSFFSI--AGSEFE-------EMFVGVGASRVREMFNEAKKAAPaIIFIDEIDAVGRK 277
46789**********************865..564433.......458888889999********99955679****99864 PP
== domain 2 score: -1.7 bits; conditional E-value: 0.51
TIGR00763 65 gvlaqilelvklkdekskketlkvvleglrrikikelvekeevlvvkveelkeeelekddeevkalseeiletlkeliklsklfre...qvetlkale 159
+++a+i +v+ +++e++ l +kv + + e+le e+++ l + +e+++ ++k +kl + + e++k+ +
MMSYN1_0039 551 KTAAKIDAEVE------------------------RILEESYKLAIKVISENMETLELLAESLRVLETITAEQIDYINKNKKLPEAviyEKEKYKQEQ 624
33333333333........................333332223333322222222222222222222222222222222222222000223333333 PP
TIGR00763 160 kleepakladl 170
+ + k++dl
MMSYN1_0039 625 EKINSGKIIDL 635
34444444444 PP
>> TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.5 0.0 9.4e-06 0.003 46 104 .. 202 258 .. 198 264 .. 0.87
2 ? 3.9 0.1 0.015 4.9 248 267 .. 263 282 .. 252 308 .. 0.72
3 ? -3.2 0.0 2.2 7.1e+02 50 74 .. 386 412 .. 377 438 .. 0.58
4 ? -3.1 1.7 2.1 6.7e+02 371 427 .. 560 618 .. 536 644 .. 0.51
Alignments for each domain:
== domain 1 score: 14.5 bits; conditional E-value: 9.4e-06
TIGR00390 46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvdaa 104
Pk +lm G+ G Gkt +a+ +a a++ f + + f e+ +vG s vr++ + a
MMSYN1_0039 202 APKGVLMEGPPGTGKTLLAKAVAGEANVSFFSIAGSEFEEM-FVGVG-ASRVREMFNEA 258
59************************************996.88865.46677776665 PP
== domain 2 score: 3.9 bits; conditional E-value: 0.015
TIGR00390 248 sGiifideidkiakkgessg 267
iifideid + +k +s+
MMSYN1_0039 263 PAIIFIDEIDAVGRKRNSAI 282
479*********99886554 PP
== domain 3 score: -3.2 bits; conditional E-value: 2.2
TIGR00390 50 ilmi..GstGvGkteiarrlaklaeaP 74
ilm+ G t +G ei + ++++ P
MMSYN1_0039 386 ILMVreGKTVIGINEIDEAIDRVVGGP 412
444433445555555554444444444 PP
== domain 4 score: -3.1 bits; conditional E-value: 2.1
TIGR00390 371 ikkiaelaynvnek..teniGarrlhtvlerlledlsfeaedlslqkvtidadyvekkl 427
+++i e +y++ k +en+ + l + r+le ++ e d+ ++ ++ ++ + +k
MMSYN1_0039 560 VERILEESYKLAIKviSENMETLELLAESLRVLETITAEQIDYINKNKKLPEAVIYEKE 618
44444444443322224444444444444444444444444444444443333333332 PP
>> TIGR00368 TIGR00368: Mg chelatase-like protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.3 0.0 0.00014 0.044 212 233 .. 204 225 .. 164 227 .. 0.84
2 ? 0.5 2.4 0.12 40 132 198 .. 572 644 .. 555 648 .] 0.67
Alignments for each domain:
== domain 1 score: 10.3 bits; conditional E-value: 0.00014
TIGR00368 212 hnllllGPPGsGktllakrlqg 233
+l+ GPPG+Gktllak + g
MMSYN1_0039 204 KGVLMEGPPGTGKTLLAKAVAG 225
458999***********99876 PP
== domain 2 score: 0.5 bits; conditional E-value: 0.12
TIGR00368 132 iivakenaeeaslvdglnvyivddlkevvkflegkeklepa......tetkkksavevslaltldlkdvkGqq 198
i v +en+e l+ + e +++++ ++kl++a + ++++++++ ++++ld++dvk +
MMSYN1_0039 572 IKVISENMETLELLAESLRVLETITAEQIDYINKNKKLPEAviyekeKYKQEQEKINSGKIIDLDINDVKEEE 644
44778888888887765544445556899999999998865221111334456678888999*******9765 PP
>> TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.8 0.0 0.00015 0.047 469 525 .. 189 241 .. 182 246 .. 0.81
2 ? 5.0 0.1 0.0041 1.3 264 289 .. 249 274 .. 241 349 .. 0.85
3 ? -3.0 0.9 1.1 3.5e+02 33 69 .. 575 611 .. 535 646 .. 0.49
Alignments for each domain:
== domain 1 score: 9.8 bits; conditional E-value: 0.00015
TIGR02639 469 lvkaikrsraGlkeenkPvgsflfvGptGvGktelakqLaeelgvellrfDmseyme 525
l + k+++aG ++ P g l+ Gp G Gkt lak++a e +v++ + se+ e
MMSYN1_0039 189 LKQPAKYASAGARA---PKG-VLMEGPPGTGKTLLAKAVAGEANVSFFSIAGSEFEE 241
55666677777654...445.5789*****************************998 PP
== domain 2 score: 5.0 bits; conditional E-value: 0.0041
TIGR02639 264 erlkevveeiekeedailfiDeihti 289
r++e+ +e +k ai+fiDei ++
MMSYN1_0039 249 SRVREMFNEAKKAAPAIIFIDEIDAV 274
79*********************876 PP
== domain 3 score: -3.0 bits; conditional E-value: 1.1
TIGR02639 33 lledeealeileecgadvellkkklekyleeelekle 69
+ e+ e+le+l+e+ +e++ ++ +y++++ + e
MMSYN1_0039 575 ISENMETLELLAESLRVLETITAEQIDYINKNKKLPE 611
2223333333333333444444444444444433332 PP
>> TIGR00678 holB: DNA polymerase III, delta' subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.5 0.0 0.00025 0.08 9 37 .. 198 226 .. 190 238 .. 0.84
Alignments for each domain:
== domain 1 score: 10.5 bits; conditional E-value: 0.00025
TIGR00678 9 ekgrlahAlLfaGpeGvGkealaealaka 37
+ r ++ +L++Gp+G+Gk+ la+a+a +
MMSYN1_0039 198 AGARAPKGVLMEGPPGTGKTLLAKAVAGE 226
5679999******************9966 PP
>> TIGR02173 cyt_kin_arch: putative cytidylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.2 0.0 0.0004 0.13 4 30 .. 207 233 .. 205 265 .. 0.83
2 ? 1.6 0.0 0.18 59 42 76 .. 386 420 .. 372 458 .. 0.78
3 ? -1.9 3.4 2.2 6.9e+02 14 143 .. 513 639 .. 510 645 .. 0.57
Alignments for each domain:
== domain 1 score: 10.2 bits; conditional E-value: 0.0004
TIGR02173 4 visGpPGsGkttvakilaeklslklis 30
+ GpPG+Gkt +ak +a + ++ + s
MMSYN1_0039 207 LMEGPPGTGKTLLAKAVAGEANVSFFS 233
678***************988777655 PP
== domain 2 score: 1.6 bits; conditional E-value: 0.18
TIGR02173 42 gldlaeskkaeeekeiDkkiDrkikeiaekeknvv 76
l + e k + +eiD+ iDr + a+k + +
MMSYN1_0039 386 ILMVREGKTVIGINEIDEAIDRVVGGPAKKSRAMT 420
5678888899999*********9988888877665 PP
== domain 3 score: -1.9 bits; conditional E-value: 2.2
TIGR02173 14 ttvakilaeklslklisaGkirelaekkgldlaeskkaeeekeiDkkiDrkikeiaekeknvvlesrlagWllkeyaDvkiylkaslevraeriakre 111
t++a+ + ++++ + k +a++ + + s ++ +iD +++r ++e + + +v+ e + ll + + + + i k
MMSYN1_0039 513 TAIARRMVMQFGMSELGITKFLTMADEAYGKTEGSYSEKTAAKIDAEVERILEESYKLAIKVISENMETLELLA--ESLRVL-ETITAEQIDYINKNK 607
66777777777777777777777777776666566666677888888888888888777777766654443333..233333.222223334444444 PP
TIGR02173 112 nksltealkeiiereesekrrykeiygiDldd 143
+ + +++ ++ + + e+ek +i +D++d
MMSYN1_0039 608 KLPEAVIYEKEKYKQEQEKINSGKIIDLDIND 639
44444444444444444554555555555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (648 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 386 (0.0860071); expected 89.8 (0.02)
Passed bias filter: 183 (0.0407754); expected 89.8 (0.02)
Passed Vit filter: 36 (0.00802139); expected 4.5 (0.001)
Passed Fwd filter: 14 (0.00311943); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 14 [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.24
# Mc/sec: 3877.32
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0039 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0040 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0040.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0040/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0040 [L=401]
Description: tilS 5=Equivalog tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.3e-50 167.9 0.6 1.2e-49 166.7 0.6 1.6 1 TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
Domain annotation for each model (and alignments):
>> TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 166.7 0.6 2.8e-53 1.2e-49 1 187 [. 11 191 .. 11 193 .. 0.92
Alignments for each domain:
== domain 1 score: 166.7 bits; conditional E-value: 2.8e-53
TIGR02432 1 kllvAvSGGvDSmaLlkllkelkeklkikliaahvdHklreeskeeaeeveelckklkiklvvkkvevkakakekkknleeaaRelRYkaleelakkl 98
k+l+AvSGG+DS+ Ll + +l + ++ l+++hv++++r++s++++ +v +lck++++kl++ +++ ++ k+n+e+ aR RY++++ +a+k+
MMSYN1_0040 11 KYLIAVSGGPDSVFLLCNVVKLVDPNN--LVVCHVNYNFRSDSNNDQMIVTNLCKQFNLKLEILNIN--KDYSLLKQNFESWARVQRYDFFNMIASKY 104
689*************99999998877..9*********************************9995..44444579********************* PP
TIGR02432 99 kaeviltAHhadDqiEtillrllrgsglkglsglkeirelekkiqivRPLlkiskkeieeylkeeklkiieDetNkdekytRnrireel 187
++ +l+AH+ +D iEt+ll+l+r++ l + glk+++++ k+ ++RPLl i+k++i +yl+++k+ + D+tN+d+ky+Rn+ir +l
MMSYN1_0040 105 QIYNLLVAHNFNDLIETYLLQLQRNN-LVDYYGLKPVSHY-KDLVVYRPLLDIKKSQILNYLNTNKISYAIDSTNSDTKYQRNKIRTTL 191
*************************9.5555667779988.5889*****************************************987 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (401 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 539 (0.120098); expected 89.8 (0.02)
Passed bias filter: 65 (0.0144831); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 2879.27
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0040 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0042 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0042.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0042/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0042 [L=275]
Description: transcriptional regulator, RpiR family 2=Generic Regulation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.008 14.4 0.3 0.95 7.8 0.0 2.8 3 TIGR02839 spore_V_AE: stage V sporulation protein AE
Domain annotation for each model (and alignments):
>> TIGR02839 spore_V_AE: stage V sporulation protein AE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.0 0.13 5.7e+02 17 46 .. 6 35 .. 3 56 .. 0.63
2 ! 7.8 0.0 0.00021 0.95 46 88 .. 118 160 .. 101 166 .. 0.86
3 ! 3.6 0.0 0.0042 19 32 64 .. 179 211 .. 159 220 .. 0.82
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 0.13
TIGR02839 17 llldvakltPakvlvtlvvvGaildglgly 46
l+l + +l+ + ++ ++ +ild ++l
MMSYN1_0042 6 LILKLDQLSKEHSSASGITSRIILDNIELI 35
555566666666666666666666666653 PP
== domain 2 score: 7.8 bits; conditional E-value: 0.00021
TIGR02839 46 ydklvelagaGatvPltgfGyslvkgaikevekkGllgiltGi 88
dklv+ tv l ++ +s+ +++ + +ek l+gi i
MMSYN1_0042 118 VDKLVKAIYNTKTVALISYDNSVNHAVTELAEKMNLIGIPPVI 160
5899**999*****************************97655 PP
== domain 3 score: 3.6 bits; conditional E-value: 0.0042
TIGR02839 32 tlvvvGaildglglydklvelagaGatvPltgf 64
+++v+ + + y+++v+l + G+ + l ++
MMSYN1_0042 179 VFIVISHFAENITTYQSIVQLKKNGSRIGLISM 211
58889999999***************9999876 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (275 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 327 (0.072861); expected 89.8 (0.02)
Passed bias filter: 93 (0.0207219); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 2078.48
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0042 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0043 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0043.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0043/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0043 [L=240]
Description: ribosomal protein L11 methyltransferase-like protein 2=Generic rRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-18 65.4 0.1 1.9e-18 64.8 0.1 1.2 1 TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransfer
9e-17 59.0 0.6 1.2e-16 58.5 0.6 1.2 1 TIGR00536 hemK_fam: methyltransferase, HemK family
9e-16 56.0 0.1 1.2e-15 55.5 0.1 1.2 1 TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransf
1.1e-11 42.8 0.8 1.5e-11 42.3 0.7 1.3 1 TIGR00537 hemK_rel_arch: putative methylase
1.4e-08 32.5 0.4 2.2e-08 31.8 0.4 1.2 1 TIGR00406 prmA: ribosomal protein L11 methyltransferase
2.2e-07 28.4 0.3 3.3e-05 21.3 0.1 2.1 2 TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesi
5.3e-07 27.1 0.1 1.1e-06 26.1 0.0 1.4 2 TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
3.8e-05 20.6 0.1 5.3e-05 20.2 0.1 1.2 1 TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
4.2e-05 20.4 1.2 5e-05 20.2 1.2 1.3 1 TIGR02987 met_A_Alw26: type II restriction m6 adenine DNA me
6.7e-05 21.0 0.4 8.8e-05 20.7 0.4 1.3 1 TIGR03587 Pse_Me-ase: pseudaminic acid biosynthesis-associat
9.7e-05 19.5 0.0 0.00013 19.2 0.0 1.1 1 TIGR04543 ketoArg_3Met: 2-ketoarginine methyltransferase
0.00013 19.0 0.0 0.00018 18.5 0.0 1.2 1 TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransfe
0.00025 19.3 0.5 0.00079 17.7 0.1 1.8 2 TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarb
0.0013 16.2 0.0 0.0017 15.8 0.0 1.2 1 TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransf
0.0013 16.4 0.4 0.0035 15.0 0.5 1.8 2 TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltran
0.0017 16.7 0.0 0.0024 16.3 0.0 1.3 1 TIGR01444 fkbM_fam: methyltransferase, FkbM family
0.0021 15.5 2.0 0.0035 14.7 1.8 1.5 1 TIGR00308 TRM1: N2,N2-dimethylguanosine tRNA methyltransfera
0.0031 14.9 0.0 0.004 14.6 0.0 1.2 1 TIGR04290 meth_Rta_06860: methyltransferase, Rta_06860 famil
0.0068 13.7 0.1 0.011 13.1 0.1 1.2 1 TIGR00755 ksgA: ribosomal RNA small subunit methyltransferas
0.0069 13.7 3.3 0.031 11.6 3.2 2.0 1 TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
------ inclusion threshold ------
0.012 12.9 0.0 0.018 12.3 0.0 1.3 1 TIGR01177 TIGR01177: putative methyltransferase, TIGR01177 f
0.017 12.6 0.0 0.027 12.0 0.0 1.3 1 TIGR02081 metW: methionine biosynthesis protein MetW
0.039 11.3 4.6 0.21 8.9 0.8 2.6 3 TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltr
Domain annotation for each model (and alignments):
>> TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.8 0.1 9.8e-21 1.9e-18 76 235 .. 30 183 .. 27 193 .. 0.86
Alignments for each domain:
== domain 1 score: 64.8 bits; conditional E-value: 9.8e-21
TIGR03534 76 LveaaleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdl..lealeekgkfdlivsNPPYipea 170
Lv + + +kk+ k++D gt +I l l k ++ak+i+v+i+++A+++a++N+k +gl+e +e++++d+ +++l ++++fdl+v+NPP+ +
MMSYN1_0043 30 LVARFCNLNSKKK--KICDFGTNNAVIPLILSKY-TKAKIIGVEIQNKAVEIAKQNIKLNGLEEqIEIIHADIkeFSKL-HNQEFDLVVCNPPFFKM- 122
6777777777777..9************988776.99************************************778888.9***************5. PP
TIGR03534 171 ekeeleeevrkfEPklALvggedGldlyrriaeeaakllkeggllllEigekqaeavaelleaag 235
+ + +e+ E + ++ l ++ i+++a+++lk++g + + + ++ ++ +l+ +++
MMSYN1_0043 123 DGNPKLKEIS-LEVA---NARHELLITLEDIIKSASRCLKNKGNFTIVHRSERLSEIINLFYKYN 183
5555556666.4544...458999999*****************999999999888888887765 PP
>> TIGR00536 hemK_fam: methyltransferase, HemK family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 58.5 0.6 6.3e-19 1.2e-16 105 250 .. 33 173 .. 25 201 .. 0.83
Alignments for each domain:
== domain 1 score: 58.5 bits; conditional E-value: 6.3e-19
TIGR00536 105 aleslisqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnl..leslakqkidlivsNPPYidkedlad 200
++ +l s++ k+i+D gt I l l+ + + a++i+v i ++a+++a++N++ ++lee++e+i+ ++ +++l++q +dl+v NPP+ + +
MMSYN1_0043 33 RFCNLNSKK--KKICDFGTNNAVIPLILSKYTK-AKIIGVEIQNKAVEIAKQNIKLNGLEEQIEIIHADIkeFSKLHNQEFDLVVCNPPFFKMDGNPK 127
556777777..8*****************9998.**********************************9988999***************98765555 PP
TIGR00536 201 keeevkfEPllALvggkdGlkilkkiieqakeylksngvlllEignsqqk 250
+ +e+ E +A l l+ ii+ a+ lk++g + + + + +
MMSYN1_0043 128 L-KEISLEVANARHE---LLITLEDIIKSASRCLKNKGNFTIVHRSERLS 173
5.7788777776544...77789999999999999998877666555555 PP
>> TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 55.5 0.1 6.4e-18 1.2e-15 119 247 .. 38 163 .. 24 184 .. 0.83
Alignments for each domain:
== domain 1 score: 55.5 bits; conditional E-value: 6.4e-18
TIGR03533 119 keevkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrveliqsdl..fealegkkydlivsnPPYvdaeelaelpeEyrh 214
+++ k++ d+ t + ++++ ++ +a++ v+i ++a+e+a++ni+ +le+++e+i++d+ f++l+++++dl+v+nPP+ + + +l +E
MMSYN1_0043 38 NSKKKKICDFGTNNAVIPLILS-KYTKAKIIGVEIQNKAVEIAKQNIKLNGLEEQIEIIHADIkeFSKLHNQEFDLVVCNPPFFKMDGNPKL-KEISL 133
3677899999999999998775.799************************************888******************998877777.45555 PP
TIGR03533 215 EPelalaagedGldlvrrilaeaaeyLeeeGvL 247
E + +a ++ l +++ i+++a++ L+++G +
MMSYN1_0043 134 EVA---NARHELLITLEDIIKSASRCLKNKGNF 163
533...456667777788899999988888865 PP
>> TIGR00537 hemK_rel_arch: putative methylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.3 0.7 7.8e-14 1.5e-11 7 151 .. 27 177 .. 21 193 .. 0.82
Alignments for each domain:
== domain 1 score: 42.3 bits; conditional E-value: 7.8e-14
TIGR00537 7 dsllleknlr.elknddvleiGaGtGlvairlkekgk.kivatdinPfavkllkenaklnnve..ldvlesdl..fenveg.kfdvilfnpPylelee 97
ds+l++ + + k++++ + G+ ++ l++ +k ki++++i+ av ++k+n kln+ e ++++++d+ f ++++ fd+++ npP+ ++++
MMSYN1_0043 27 DSILVARFCNlNSKKKKICDFGTNNAVIPLILSKYTKaKIIGVEIQNKAVEIAKQNIKLNGLEeqIEIIHADIkeFSKLHNqEFDLVVCNPPFFKMDG 124
78887764331456677****************999889*********************8643399*****94445666669*************** PP
TIGR00537 98 dekrgdy.ldlaidGGkdGrkvidrfldelpeilkegGrvqlvqsslsdeketld 151
+ k ++ l++a + ++ ++ +++ lk++G +v s e+++
MMSYN1_0043 125 NPKLKEIsLEVA-NARHELLITLEDIIKSASRCLKNKGNFTIVHRSER-LSEIIN 177
*99887537776.6778888899********************99876.455555 PP
>> TIGR00406 prmA: ribosomal protein L11 methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.8 0.4 1.1e-10 2.2e-08 155 232 .. 36 116 .. 28 117 .. 0.93
Alignments for each domain:
== domain 1 score: 31.8 bits; conditional E-value: 1.1e-10
TIGR00406 155 sldlkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklen...leqkiegkaDvivaN 232
+l+ k+kk+ D+G+ ++ + + k ak+++v+i ave a++N++lN+++++++++ + + ++++D +v+N
MMSYN1_0043 36 NLNSKKKKICDFGTNNAVIPLILSKYTKAKIIGVEIQNKAVEIAKQNIKLNGLEEQIEIIHADikeFSKLHNQEFDLVVCN 116
577899****************************************************99988765678999********9 PP
>> TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.3 0.1 1.7e-07 3.3e-05 16 111 .. 19 114 .. 13 116 .. 0.88
2 ? 5.3 0.0 0.013 2.5 124 165 .. 148 186 .. 143 200 .. 0.76
Alignments for each domain:
== domain 1 score: 21.3 bits; conditional E-value: 1.7e-07
TIGR01934 16 NdllSlGldrlWkkkavkkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.eeanvefieadaeeLp.fednsfdavt 111
N+++ + ld + +++++ k++k+ D t + + + l+k ++ak++gv + ++ +e+ak+ +k + e+++e i+ad +e++ +++++fd+v
MMSYN1_0043 19 NKMFNFTLDSILVARFCNLNS--KKKKICDFGTNNAVIPLILSKYTKAKIIGVEIQNKAVEIAKQNIKLNgLEEQIEIIHADIKEFSkLHNQEFDLVV 114
667777777777777776544..699****************************************99889999***********9879******985 PP
== domain 2 score: 5.3 bits; conditional E-value: 0.013
TIGR01934 124 kaLkelaRVlkpggrlvilefskpknallkklyklYlknvlp 165
+k + R lk++g+++i+ s++ +++++ +yk n+ p
MMSYN1_0043 148 DIIKSASRCLKNKGNFTIVHRSERLSEIINLFYK---YNIYP 186
568999**************99999888866554...44444 PP
>> TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.1 0.0 5.4e-09 1.1e-06 47 122 .. 38 115 .. 8 120 .. 0.85
2 ? -3.1 0.0 4.8 9.3e+02 132 149 .. 146 163 .. 134 174 .. 0.64
Alignments for each domain:
== domain 1 score: 26.1 bits; conditional E-value: 5.4e-09
TIGR01983 47 kleglkvlDvGcGgGllseslarl.gaevtgiDlseelievAklhakkdplk.kieyelksveelaeeekesfDvvla 122
+ +++k+ D G+ ++ l++ +a+++g+++ ++++e+Ak+ k ++l+ +ie +++++e+++ ++++fD+v++
MMSYN1_0043 38 NSKKKKICDFGTNNAVIPLILSKYtKAKIIGVEIQNKAVEIAKQNIKLNGLEeQIEIIHADIKEFSKLHNQEFDLVVC 115
446899****************962567***********************99***********************99 PP
== domain 2 score: -3.1 bits; conditional E-value: 4.8
TIGR01983 132 leeilkecaellkpggil 149
le+i+k++++ lk++g
MMSYN1_0043 146 LEDIIKSASRCLKNKGNF 163
455555555555555543 PP
>> TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.2 0.1 2.7e-07 5.3e-05 287 372 .. 33 118 .. 3 132 .. 0.74
Alignments for each domain:
== domain 1 score: 20.2 bits; conditional E-value: 2.7e-07
TIGR00479 287 ealelqge.ekvvDaycGvGtftlplAkqak.svvgvevvkesvekakrnAelngia.nveflageleevlpklskekisadkvllDPp 372
+ +l+ + k+ D + + l l k k +++gve+ +++ve ak+n +lng++ +e +++++ e ++kl ++++d v+ +Pp
MMSYN1_0043 33 RFCNLNSKkKKICDFGTNNAVIPLILSKYTKaKIIGVEIQNKAVEIAKQNIKLNGLEeQIEIIHADIKE-FSKLH--NQEFDLVVCNPP 118
4566654414555655556668899999776479*********************96369******976.67777..679********9 PP
>> TIGR02987 met_A_Alw26: type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.2 1.2 2.5e-07 5e-05 60 125 .. 60 122 .. 11 164 .. 0.86
Alignments for each domain:
== domain 1 score: 20.2 bits; conditional E-value: 2.5e-07
TIGR02987 60 kevelnieladideklLerakkllselaaleisiklknslsdvlllieeyaekfdivitNPPyknl 125
k ++ +i ++i++k++e ak++++ +++++++ + d+ +++ + ++fd+v+ NPP+ ++
MMSYN1_0043 60 KYTKAKIIGVEIQNKAVEIAKQNIKLNG---LEEQIEIIHADIKEFSKLHNQEFDLVVCNPPFFKM 122
45778888899**********9997655...9******************************9665 PP
>> TIGR03587 Pse_Me-ase: pseudaminic acid biosynthesis-associated methylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.7 0.4 4.5e-07 8.8e-05 33 113 .. 30 117 .. 9 183 .. 0.78
Alignments for each domain:
== domain 1 score: 20.7 bits; conditional E-value: 4.5e-07
TIGR03587 33 lfaralkrlskiasilelGaniGlnlkalkrllpkkelyaveinesaveklkaylk......einviqgslfdpvk..ektfdlvltkG 113
l ar+ + sk + i ++G+n + l + k+++ +vei+++ave +k+ +k +i++i+ + +++k +++fdlv+ +
MMSYN1_0043 30 LVARFCNLNSKKKKICDFGTNNAVIPLILSKY-TKAKIIGVEIQNKAVEIAKQNIKlngleeQIEIIHADIKEFSKlhNQEFDLVVCNP 117
56788888899999999999998877777777.9**************9888766422222279999999988654227899*999875 PP
>> TIGR04543 ketoArg_3Met: 2-ketoarginine methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.2 0.0 6.5e-07 0.00013 144 217 .. 35 107 .. 25 139 .. 0.84
Alignments for each domain:
== domain 1 score: 19.2 bits; conditional E-value: 6.5e-07
TIGR04543 144 aklpeeakklvDlGCGdgsflaellealpeieaiGvdpdaesieaaeelikeegleervklekasaedflesdl 217
+l +++kk+ D+G ++ + +l++ ++ + iGv+ +++++e a++ ik +glee++++ +a ++f + +
MMSYN1_0043 35 CNLNSKKKKICDFGTNNAVIPL-ILSKYTKAKIIGVEIQNKAVEIAKQNIKLNGLEEQIEIIHADIKEFSKLHN 107
5788999*******99887655.66777888**************************************88332 PP
>> TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.5 0.0 9.3e-07 0.00018 255 309 .. 63 118 .. 44 132 .. 0.91
Alignments for each domain:
== domain 1 score: 18.5 bits; conditional E-value: 9.3e-07
TIGR02085 255 dikltGieieseaiaaakrsakelGle.nlsfaaldsakfaeakadvpelvlvnpp 309
+ k+ G+ei+++a+ ak+ k Gle ++++ d +f++ +++ +lv+ npp
MMSYN1_0043 63 KAKIIGVEIQNKAVEIAKQNIKLNGLEeQIEIIHADIKEFSKLHNQEFDLVVCNPP 118
56899*********************73699************************9 PP
>> TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.7 0.1 4.1e-06 0.00079 10 93 .. 32 114 .. 23 117 .. 0.86
2 ? -0.4 0.0 1.6 3.2e+02 33 66 .. 131 163 .. 130 207 .. 0.71
Alignments for each domain:
== domain 1 score: 17.7 bits; conditional E-value: 4.1e-06
TIGR02469 10 ltLakLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrf.gvsnieivegdapkaeedsleeadavf 93
++L+ k ++++ D G +++ +++ + +++++e +++a+e ++N++ + ++iei+++d+++ + ++e+d v+
MMSYN1_0043 32 ARFCNLNSK-KKKICDFGTNNAVIPLILSKYTKA-KIIGVEIQNKAVEIAKQNIKLNgLEEQIEIIHADIKEFSKLHNQEFDLVV 114
556777777.789*************99998877.99********************67789********988888899**9987 PP
== domain 2 score: -0.4 bits; conditional E-value: 1.6
TIGR02469 33 vtieaarlvpkgrvyaierneealelieeNlrrf 66
+++e+a++ ++ +++e ++++ +N +f
MMSYN1_0043 131 ISLEVANARHELL-ITLEDIIKSASRCLKNKGNF 163
6777777777754.66777666666666666666 PP
>> TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.8 0.0 8.7e-06 0.0017 53 124 .. 39 115 .. 23 161 .. 0.85
Alignments for each domain:
== domain 1 score: 15.8 bits; conditional E-value: 8.7e-06
TIGR02021 53 lkGkkvlDAGCGtGllsielAk.rGaivkavDiseklvelarkraekedeaenveFevndlesle....gkfDavva 124
k kk++D G ++ l k a++ +v+i +k ve+a+++ + + e++e d+++ + ++fD vv+
MMSYN1_0043 39 SKKKKICDFGTNNAVIPLILSKyTKAKIIGVEIQNKAVEIAKQNIKLNGLEEQIEIIHADIKEFSklhnQEFDLVVC 115
46799***************9934699********************999999999999998643223589*****9 PP
>> TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.5 1.8e-05 0.0035 76 140 .. 64 125 .. 57 206 .. 0.77
2 ? -1.1 0.0 1.5 3e+02 114 138 .. 189 213 .. 160 228 .. 0.67
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 1.8e-05
TIGR00095 76 kkvvfveqdkkvaktlkeNlstlklskeqatvlndaeralavlakketvfdiiylDPPfevklle 140
+k++ ve ++k++++ k+N+++ l+++++ + d ++ ++ ++ fd++ PPf + +
MMSYN1_0043 64 AKIIGVEIQNKAVEIAKQNIKLNGLEEQIEIIHADI-KE--FSKLHNQEFDLVVCNPPFFKMDGN 125
46788****************999999777666665.54..455556669********9654433 PP
== domain 2 score: -1.1 bits; conditional E-value: 1.5
TIGR00095 114 alavlakketvfdiiylDPPfevkl 138
++kk+ ++i+lD ++ ++
MMSYN1_0043 189 LRLIQSKKTDNAKMILLDGIYQGNE 213
3445556666677777776666665 PP
>> TIGR01444 fkbM_fam: methyltransferase, FkbM family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.3 0.0 1.2e-05 0.0024 2 58 .. 44 100 .. 43 154 .. 0.86
Alignments for each domain:
== domain 1 score: 16.3 bits; conditional E-value: 1.2e-05
TIGR01444 2 viDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlkn.vkllnaAvg 58
+ D G n+ + l+++++++ ++i +E + +++e++++n+kln+l++ +++++a +
MMSYN1_0043 44 ICDFGTNNAVIPLILSKYTKA-KIIGVEIQNKAVEIAKQNIKLNGLEEqIEIIHADIK 100
67999********99988886.************************999999998765 PP
>> TIGR00308 TRM1: N2,N2-dimethylguanosine tRNA methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.7 1.8 1.8e-05 0.0035 17 122 .. 15 117 .. 7 170 .. 0.77
Alignments for each domain:
== domain 1 score: 14.7 bits; conditional E-value: 1.8e-05
TIGR00308 17 fYnPrmkfnRDlsvvvikafdnlygkeckieildalsasGiRaiRyakeiegvkevianDinPkavesiknnvklnsve.nievineDaaavlrkrnr 113
Y + fn l+ + + f nl +k+ ki + + + i + ++i +i+ kave k+n+kln++e +ie+i+ D + + +n+
MMSYN1_0043 15 LYQDNKMFNFTLDSILVARFCNLNSKKKKICDFGTNN--AV--IPLILSKYTKAKIIGVEIQNKAVEIAKQNIKLNGLEeQIEIIHADIKEFSKLHNQ 108
6777777888888777888888888875554444333..33..3333334445899999******************973599*************** PP
TIGR00308 114 kfeviDiDP 122
+f+ + +P
MMSYN1_0043 109 EFDLVVCNP 117
***987765 PP
>> TIGR04290 meth_Rta_06860: methyltransferase, Rta_06860 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.0 2.1e-05 0.004 50 121 .. 41 115 .. 29 170 .. 0.89
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 2.1e-05
TIGR04290 50 GksvldiGcnaGfysielkrrgaervvgidsdarylaqarfaaevlg.ad.iefrklsvydvekleek.fdlvlf 121
k++ d G n + l + + ++++g++ +++ ++ a+ + g ++ ie+ + ++ + +kl+++ fdlv+
MMSYN1_0043 41 KKKICDFGTNNAVIPLILSKYTKAKIIGVEIQNKAVEIAKQNIKLNGlEEqIEIIHADIKEFSKLHNQeFDLVVC 115
57899**************************************99996447**************8766***986 PP
>> TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.1 0.1 5.5e-05 0.011 10 104 .. 23 119 .. 17 120 .. 0.82
Alignments for each domain:
== domain 1 score: 13.1 bits; conditional E-value: 5.5e-05
TIGR00755 10 nfLvdesvlqkivealeiqesdrvlEiGpGlGaLTeellkkakk.vvavEiDkrlaeelrkklee...ekkleiiegDalkldleelakdkkvvsNlP 103
nf d+ +++++++ + +++++ G +++ l k +k ++ vEi ++ +e+ +++ + e+++eii+ D+ ++ + ++ ++vv N P
MMSYN1_0043 23 NFTLDSILVARFCNLNS--KKKKICDFGTNNAVIPLILSKYTKAkIIGVEIQNKAVEIAKQNIKLnglEEQIEIIHADIKEFSKLHNQEFDLVVCNPP 118
56667777777776554..56889999999999999999877666*****************9999999**********9986555555459****99 PP
TIGR00755 104 Y 104
+
MMSYN1_0043 119 F 119
8 PP
>> TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.6 3.2 0.00016 0.031 16 83 .. 40 107 .. 28 176 .. 0.85
Alignments for each domain:
== domain 1 score: 11.6 bits; conditional E-value: 0.00016
TIGR00091 16 kkplvleiGcGkGrfliklAkqnpeknflGiEiekpivlkainkaeklglk.Nlkvlcgdakkllekfi 83
kk+ + + G+ ++ l+k + +++G+Ei+++ v a ++++ +gl+ ++++ d+k++ +
MMSYN1_0043 40 KKKKICDFGTNNAVIPLILSK-YTKAKIIGVEIQNKAVEIAKQNIKLNGLEeQIEIIHADIKEFSKLHN 107
555566777777777776665.45789***********************999********99876554 PP
>> TIGR01177 TIGR01177: putative methyltransferase, TIGR01177 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.3 0.0 9.5e-05 0.018 205 261 .. 64 122 .. 62 184 .. 0.74
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 9.5e-05
TIGR01177 205 ikviglDidekmveGariNLehYgied.fkvkrldakklplr.sesvdaiatDpPYgrs 261
+k ig+ i+ k ve a+ N++ g+e+ ++++ +d k+ ++++d ++ pP+ +
MMSYN1_0043 64 AKIIGVEIQNKAVEIAKQNIKLNGLEEqIEIIHADIKEFSKLhNQEFDLVVCNPPFFKM 122
689**********************999**********9876479**********9653 PP
>> TIGR02081 metW: methionine biosynthesis protein MetW
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.0 0.0 0.00014 0.027 13 102 .. 40 136 .. 30 143 .. 0.67
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 0.00014
TIGR02081 13 agsrvLDlGcGdGeLLallrdekqvegaGleideenv........lacvarGveviqqdldegLeafedksfDvvvlsqtlqavrnteeiLdellRvg 102
++ ++ D G+ + + +l + + + G+ei++++v l+ ++ +e+i++d++e ++ ++++fD+vv + + ++ ++ + +l v+
MMSYN1_0043 40 KKKKICDFGTNNAVIPLILSKYTKAKIIGVEIQNKAVeiakqnikLNGLEEQIEIIHADIKE-FSKLHNQEFDLVVCNPPFFKMDGNPKLKEISLEVA 136
55677788888888777777777777766666666551111111234556678899999965.66777899*****9988777776666666566555 PP
>> TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.0 0.0 1.1 2.2e+02 102 130 .. 8 36 .. 2 43 .. 0.79
2 ? 8.9 0.8 0.0011 0.21 40 99 .. 56 114 .. 45 116 .. 0.81
3 ? 2.8 0.1 0.078 15 218 278 .. 143 199 .. 137 217 .. 0.63
Alignments for each domain:
== domain 1 score: -1.0 bits; conditional E-value: 1.1
TIGR00006 102 LGvSspqldeaerGFsfkkdgplDmRmdq 130
LG +l ++++ F+f+ d l R+++
MMSYN1_0043 8 LGYKNRKLYQDNKMFNFTLDSILVARFCN 36
588889999********999988888775 PP
== domain 2 score: 8.9 bits; conditional E-value: 0.0011
TIGR00006 40 aiLeklsegrLiaidrDkqaieaakellkdlkevvlikdnfanlfeelkelkvtkidgil 99
iL+k+++ ++i+++ ++a+e+ak+ +l++++ ++ ++ +e+++l+++++d ++
MMSYN1_0043 56 LILSKYTKAKIIGVEIQNKAVEIAKQNI-KLNGLEEQIEIIHADIKEFSKLHNQEFDLVV 114
69************************99.6666666666666666667777777787765 PP
== domain 3 score: 2.8 bits; conditional E-value: 0.078
TIGR00006 218 leeleealesalellkkggrlsvisFHSlEdrivknffkelsklvqvPeglpvkeeelkkl 278
l +le +++sa +lk++g ++++ i+ n f ++ P+ l++ +++ + +
MMSYN1_0043 143 LITLEDIIKSASRCLKNKGNFTIVHRSERLSEII-NLFYKY---NIYPKRLRLIQSKKTDN 199
5579999**************9974322222333.233333...23466666666655555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (240 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 232 (0.0516934); expected 89.8 (0.02)
Passed bias filter: 124 (0.0276292); expected 89.8 (0.02)
Passed Vit filter: 38 (0.00846702); expected 4.5 (0.001)
Passed Fwd filter: 23 (0.00512478); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 23 [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.21
# Mc/sec: 1641.19
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0043 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0044 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0044.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0044/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0044 [L=246]
Description: DNA polymerase III delta subunit 4=Probable DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-24 83.4 0.7 5e-24 82.9 0.8 1.4 1 TIGR00678 holB: DNA polymerase III, delta' subunit
4.4e-16 57.0 1.1 4.4e-16 57.0 1.1 1.9 2 TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and
Domain annotation for each model (and alignments):
>> TIGR00678 holB: DNA polymerase III, delta' subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.9 0.8 2.2e-27 5e-24 52 157 .. 55 160 .. 10 197 .. 0.85
Alignments for each domain:
== domain 1 score: 82.9 bits; conditional E-value: 2.2e-27
TIGR00678 52 ckscrrieagnHPDllvlepegqkikvdqvreleeelsktp.lesgrrvviiedaealneaaaNaLLKtLEEPpektlflLisespekllpTirSRcq 148
k +i++++H D+l++ + +i+ ++v +l++++s ++ ++++ +++ii++a++l+++aaN+LLK+LEEPp +t+ +L++++ ++++ Ti SRcq
MMSYN1_0044 55 NKLKDQIQNNTHVDILTIGN-NINITNQEVLDLINKMSLSAtATQNIKFFIIKNAQNLKQSAANSLLKFLEEPPINTYGILLTNNYSEIINTIWSRCQ 151
5667899***********98.66799999999999998876156789*************************************************** PP
TIGR00678 149 rlslqplse 157
+++ ++
MMSYN1_0044 152 LINIDNETK 160
***986554 PP
>> TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 57.0 1.1 1.9e-19 4.4e-16 78 175 .. 59 157 .. 39 172 .. 0.90
2 ? -0.2 0.1 0.049 1.1e+02 237 274 .. 170 207 .. 158 239 .. 0.53
Alignments for each domain:
== domain 1 score: 57.0 bits; conditional E-value: 1.9e-19
TIGR02397 78 keinegksldviEiDaAsnngvddirellenvkyapsk.skykvYiiDEvhmLsksafnaLLKtlEePpehvvFilaTtelekipetilSRcqrfdfk 174
+i++++++d++ i n +++ +l++++ ++ + ++ k +ii ++ L +sa n+LLK+lEePp + il T +++ i++ti SRcq +++
MMSYN1_0044 59 DQIQNNTHVDILTIGNNINITNQEVLDLINKMSLSATAtQNIKFFIIKNAQNLKQSAANSLLKFLEEPPINTYGILLTNNYSEIINTIWSRCQLINID 156
5799***************************99887651678***************************************************98876 PP
TIGR02397 175 k 175
+
MMSYN1_0044 157 N 157
4 PP
== domain 2 score: -0.2 bits; conditional E-value: 0.049
TIGR02397 237 ellglvseekllelleailkkdleealklleellekgv 274
ell +++++l + +++ + + +e++k++++++++ +
MMSYN1_0044 170 ELLISKNKDEILLFNKEMKAMNKNELVKMIDDAYNRTI 207
44444444455555555555555555555555555442 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (246 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 421 (0.0938057); expected 89.8 (0.02)
Passed bias filter: 98 (0.021836); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1766.33
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0044 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0045 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0045.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0045/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0045 [L=213]
Description: tmk 5=Equivalog Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-60 202.5 1.5 1.5e-60 202.2 1.5 1.0 1 TIGR00041 DTMP_kinase: dTMP kinase
0.00018 19.4 1.1 0.0008 17.3 1.0 2.0 2 TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
0.0015 15.8 0.8 0.0063 13.7 0.0 2.2 2 TIGR00064 ftsY: signal recognition particle-docking protein
0.0029 15.3 0.5 0.2 9.2 0.0 2.4 2 TIGR03707 PPK2_P_aer: polyphosphate kinase 2
0.0053 14.8 0.9 0.014 13.4 0.1 2.2 2 TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthe
0.0098 13.5 0.2 0.018 12.7 0.2 1.5 1 TIGR01360 aden_kin_iso1: adenylate kinase
Domain annotation for each model (and alignments):
>> TIGR00041 DTMP_kinase: dTMP kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 202.2 1.5 2e-63 1.5e-60 5 194 .. 1 194 [. 1 196 [. 0.98
Alignments for each domain:
== domain 1 score: 202.2 bits; conditional E-value: 2e-63
TIGR00041 5 kfiviEGidGaGKTtqlellkkllkeeglkvlltrEPggtklgekirelllteneepleekaealLFaadRaehveekikpalaegklvisDRylfSs 102
+fi++EG+dG+GKTt+l ++k+ l++ ++kvl+trEPgg ++e+ir+++l ++++ ++ +ealLF a+R++h++++ikpal+++ +visDR++ S+
MMSYN1_0045 1 MFITFEGMDGSGKTTALLKVKEELERLNYKVLITREPGGEAIAEQIRQIILDNKNKDMDAWTEALLFIASRNQHLQKVIKPALEKNIIVISDRFIDST 98
8************************************************************************************************* PP
TIGR00041 103 lAYqglarkididlvlelnekalq.lkPdlvilLdidpevalerlskrge..ldreelekldflekvrekyleladk.ekkivvvdaenkveevee 194
AYqg ar+i++d+v e+++ +l+ + Pdl++++d+ +++a +r++ rge ++r ++ek df +kv + ylel+++ k+i v+da++ +++v +
MMSYN1_0045 99 SAYQGSARNIGVDVVSEVQQIVLKnCLPDLTLFFDVSFSEAEKRMQIRGEssKNRLDKEKSDFKQKVYQGYLELVKNnPKRIKVIDANQDIDQVYN 194
**************************************************9899***********************99*************9976 PP
>> TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.1 0.0 0.49 3.7e+02 6 24 .. 7 25 .. 3 36 .. 0.84
2 ! 17.3 1.0 1.1e-06 0.0008 101 183 .. 121 199 .. 100 202 .. 0.75
Alignments for each domain:
== domain 1 score: -1.1 bits; conditional E-value: 0.49
TIGR01359 6 GgPGsGkGtqCakiveefk 24
G GsGk t k+ ee++
MMSYN1_0045 7 GMDGSGKTTALLKVKEELE 25
6789*****9999988775 PP
== domain 2 score: 17.3 bits; conditional E-value: 1.1e-06
TIGR01359 101 dekvevkfvlfldcseevmvkrllkrgqss.Grvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfeeveki 183
++ ++ lf+d+s ++ kr++ rg+ss r d + +k+ ++y+ l++++ ++ +++k ida++++++v+++ ki
MMSYN1_0045 121 LKNCLPDLTLFFDVSFSEAEKRMQIRGESSkNRLDKEKSDFKQ--KVYQGY-LELVK--NNPKRIKVIDANQDIDQVYNQAIKI 199
556677889*******************972466666555555..456544.44444..56788999***********986554 PP
>> TIGR00064 ftsY: signal recognition particle-docking protein FtsY
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.7 0.0 8.4e-06 0.0063 82 113 .. 3 34 .. 1 63 [. 0.91
2 ? 0.0 0.6 0.13 97 17 66 .. 159 209 .. 129 213 .] 0.70
Alignments for each domain:
== domain 1 score: 13.7 bits; conditional E-value: 8.4e-06
TIGR00064 82 illvGvNGvGKTttiaKlakllkkegkkvlla 113
i + G+ G+GKTt++ K+ + l++ ++kvl++
MMSYN1_0045 3 ITFEGMDGSGKTTALLKVKEELERLNYKVLIT 34
6788**************************96 PP
== domain 2 score: 0.0 bits; conditional E-value: 0.13
TIGR00064 17 aDvglevvekiieelkkelkekk.vkeeeklkellkeelkealkeileket 66
+D + +v + +e +k++ k+ k ++ +++++++ ++++k +l++ +e+e+
MMSYN1_0045 159 SDFKQKVYQGYLELVKNNPKRIKvIDANQDIDQVYNQAIKIILEKLKENEK 209
666677777777777777666441455666666666666666666555444 PP
>> TIGR03707 PPK2_P_aer: polyphosphate kinase 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.2 0.0 0.00027 0.2 33 68 .. 2 37 .. 1 48 [. 0.86
2 ? 3.9 0.1 0.011 8.5 125 167 .. 115 157 .. 105 176 .. 0.76
Alignments for each domain:
== domain 1 score: 9.2 bits; conditional E-value: 0.00027
TIGR03707 33 vvvfeGRDaaGkggtikriteklnprearvvaLekP 68
+ feG D++Gk +++ +++e+l+ + +v +P
MMSYN1_0045 2 FITFEGMDGSGKTTALLKVKEELERLNYKVLITREP 37
689********************9988888776666 PP
== domain 2 score: 3.9 bits; conditional E-value: 0.011
TIGR03707 125 efekmlvedgikllkywlsvskeeqerRlkeRkedplkqwkls 167
e+ + ++++ + l ++++vs +e e+R++ R e+ +
MMSYN1_0045 115 EVQQIVLKNCLPDLTLFFDVSFSEAEKRMQIRGESSKNRLDKE 157
5666666777777789****************98877665555 PP
>> TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.4 0.1 1.9e-05 0.014 2 32 .. 3 33 .. 2 90 .. 0.93
2 ? -1.3 0.1 0.61 4.5e+02 112 136 .. 171 195 .. 150 209 .. 0.59
Alignments for each domain:
== domain 1 score: 13.4 bits; conditional E-value: 1.9e-05
TIGR00176 2 lqivgykdsGKTtlieklvkelkargyrVat 32
+++ g+ +sGKTt++ k+ +el+ +y+V +
MMSYN1_0045 3 ITFEGMDGSGKTTALLKVKEELERLNYKVLI 33
57889************************87 PP
== domain 2 score: -1.3 bits; conditional E-value: 0.61
TIGR00176 112 eaeekeiirskvlaiasdvelsalk 136
e +++++r+kv++ +d++ + ++
MMSYN1_0045 171 ELVKNNPKRIKVIDANQDIDQVYNQ 195
4455556666666555555555443 PP
>> TIGR01360 aden_kin_iso1: adenylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.7 0.2 2.4e-05 0.018 106 184 .. 125 199 .. 89 203 .. 0.77
Alignments for each domain:
== domain 1 score: 12.7 bits; conditional E-value: 2.4e-05
TIGR01360 106 eaklvlyldvsedtlvkrllkraetsa.rvddnektikkrletykkatepvieyyeskgkllkinaegtvddvflevvaa 184
++l l++dvs kr+ r+e+s r d ++ k+++ ++ +++ +++ i+a++++d+v+ + ++
MMSYN1_0045 125 LPDLTLFFDVSFSEAEKRMQIRGESSKnRLDKEKSDFKQKV---YQGYLELVKNNP--KRIKVIDANQDIDQVYNQAIKI 199
589***********************944555444555543...333344444333..467889999******9998775 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (213 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 310 (0.0690731); expected 89.8 (0.02)
Passed bias filter: 111 (0.0247326); expected 89.8 (0.02)
Passed Vit filter: 21 (0.00467914); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1529.39
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0045 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0046 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0046.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0046/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0046 [L=196]
Description: recR: recombination protein RecR 5=Equivalog DNA repair
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-50 168.0 2.0 4.3e-50 167.9 2.0 1.0 1 TIGR00615 recR: recombination protein RecR
0.006 14.3 0.7 0.0089 13.8 0.7 1.3 1 TIGR01950 SoxR: redox-sensitive transcriptional activator So
------ inclusion threshold ------
0.024 11.6 0.9 0.041 10.8 0.8 1.3 1 TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB
Domain annotation for each model (and alignments):
>> TIGR00615 recR: recombination protein RecR
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 167.9 2.0 2.9e-53 4.3e-50 4 196 .] 3 192 .. 1 192 [. 0.97
Alignments for each domain:
== domain 1 score: 167.9 bits; conditional E-value: 2.9e-53
TIGR00615 4 eealkklieslkklPgiGkksAqrlafellklekeeveelakalleakeelktCsvCgklsdeevCeiCsderrdksvicvveepkDvialeklkefk 101
e+++ ++ies++ g+ kk+ +rl ll +k++ ++++ +l++ak+ ++tC+ Cg ls++++C +Cs e+r++++ic+v++ D+ +e+++++k
MMSYN1_0046 3 ETTFDEIIESIRTNQGLTKKTSERLLVDLL-INKDKLDQFIDQLNKAKQLISTCKICGYLSENDKCLVCSLENRNQNIICIVSTILDAKNIENTNKYK 99
578899********************9998.577899************************************************************* PP
TIGR00615 102 GryhvLggllsPlegigpedlklkaLlkRleeeevkEvilAlnptvegeatalyikkllkelavkvtriAsGlpvGgdlefvDevtLaralegRr 196
G yh+L+g ++ + i ++l+++++ kR++++ +E+ilAln+t ege ta+y+ kll+++++k+tr+A+G+p+G++l+++De tL+ a+ +R+
MMSYN1_0046 100 GVYHILNGEINLNKNITLDKLNISSIFKRINDN--TEIILALNSTFEGELTANYLYKLLSTKNIKITRLAKGIPMGASLDYMDEFTLQSAFLNRK 192
******************************986..8*******************************************************9996 PP
>> TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.8 0.7 5.9e-06 0.0089 88 122 .. 34 69 .. 3 88 .. 0.74
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 5.9e-06
TIGR01950 88 wkeelderieklvalrdeldgciGcGclsles.cal 122
k++ld+ i++l++ ++ ++ c cG ls ++ c +
MMSYN1_0046 34 NKDKLDQFIDQLNKAKQLISTCKICGYLSENDkCLV 69
4899*************************8753433 PP
>> TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.8 0.8 2.7e-05 0.041 200 273 .. 83 155 .. 30 160 .. 0.71
Alignments for each domain:
== domain 1 score: 10.8 bits; conditional E-value: 2.7e-05
TIGR03821 200 kksrlqvvlvvhinhaneidaelakalaklrkagvtllnqsvLLrgvnddaetLaeLserLfdagvlPyyLhlL 273
++ l + + +n + + + l+ ++ +++++ ln s +++++nd++e++ +L+ f+ +++ yL+ L
MMSYN1_0046 83 VSTILDAKNIENTNKYKGVYHILNGEINLNKNITLDKLNISSIFKRINDNTEIILALNS-TFEGELTANYLYKL 155
4445666666677788888888888899999999999*******************976.69999999999987 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (196 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 309 (0.0688503); expected 89.8 (0.02)
Passed bias filter: 125 (0.027852); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1481.39
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0046 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0047 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0047.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0047/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0047 [L=668]
Description: DNA polymerase III, subunit gamma and tau 5=Equivalog DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.1e-120 399.2 15.2 4.1e-120 399.2 15.2 2.3 2 TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and
3.9e-48 161.5 0.5 7.5e-48 160.6 0.5 1.5 1 TIGR00678 holB: DNA polymerase III, delta' subunit
2.7e-10 38.0 6.8 2.7e-10 38.0 6.8 1.8 2 TIGR01128 holA: DNA polymerase III, delta subunit
1.6e-08 31.9 1.0 1.6e-08 31.9 1.0 1.7 2 TIGR00635 ruvB: Holliday junction DNA helicase RuvB
0.00015 18.9 0.0 0.00015 18.9 0.0 2.8 3 TIGR02881 spore_V_K: stage V sporulation protein K
0.0011 15.6 0.0 0.0018 14.9 0.0 1.2 1 TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
0.0021 14.7 0.1 0.0039 13.9 0.1 1.3 1 TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D
------ inclusion threshold ------
0.035 11.2 0.0 0.074 10.2 0.0 1.5 1 TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I
Domain annotation for each model (and alignments):
>> TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 399.2 15.2 7.3e-123 4.1e-120 2 354 .. 6 356 .. 5 357 .. 0.98
2 ? -1.5 6.5 0.49 2.8e+02 208 296 .. 519 605 .. 454 659 .. 0.60
Alignments for each domain:
== domain 1 score: 399.2 bits; conditional E-value: 7.3e-123
TIGR02397 2 qvlarkyrPktFedliGqehvvktLknaikknkiahayLfsGprGvGKTsiArilAkalNCenkedgepcneCesCkeinegksldviEiDaAsnngv 99
q+l+r yrPk+F+++ G++ + ++L+++ik+n+i+ha LfsG+rG+GKTs+Ari+Ak++NC n +++++c++C++Ck +n+++ +d+iEiDaAsnngv
MMSYN1_0047 6 QSLYRTYRPKDFNSVAGHNNIKEILEKQIKDNRINHALLFSGQRGTGKTSVARIFAKTINCLNLTNSTACEQCNNCKLANQNQLIDIIEIDAASNNGV 103
89************************************************************************************************ PP
TIGR02397 100 ddirellenvkyapskskykvYiiDEvhmLsksafnaLLKtlEePpehvvFilaTtelekipetilSRcqrfdfkkikeekiverlkkilkkekikve 197
d+ire++++v p +skykvYiiDEvhmL+k+afnaLLKtlEePp + +FilaTte++kip+tilSRcq f+f ki+++++++rl++i+++e++++e
MMSYN1_0047 104 DEIREIKNSVSTLPLNSKYKVYIIDEVHMLTKQAFNALLKTLEEPPVYAIFILATTEFNKIPQTILSRCQIFNFTKIDKNSLKNRLQYIANQENYQIE 201
************************************************************************************************** PP
TIGR02397 198 eeaLeliarkaeGslRDalslldqlislskgkitlekveellglvseekllelleailkkdleealklleellekgvdleklledliellrdlllvkk 295
+e L+ + + +eGslRDa+++l+ql++ +++ it +++++++ ++++++ l+++++ l+++++ ++++++++ ++g++++ ++ lie+l++++ +k
MMSYN1_0047 202 KEVLDEMFYLSEGSLRDAINILEQLMLATDDLITIKTLKSIFLIATKQEQLQVVHQSLNNNTSFIISYFQKANDQGMNWDVFALGLIEILKEIIEYKL 299
************************************************************************************************** PP
TIGR02397 296 tk.selleveeeeeeslkekaeklslekllellkilleaekelkvsenkrialelallkl 354
t+ +e+l++ e++e e+ +++++++l l+++l ea ++k ++ + +l l+llk+
MMSYN1_0047 300 TNnTEFLNILEKNEV---EQFNSVNANNLFILADNLAEAYFKTKAANISFNYLLLSLLKT 356
*97777777776666...79999*************************999999999886 PP
== domain 2 score: -1.5 bits; conditional E-value: 0.49
TIGR02397 208 aeGslRDalslldqlislskgkitlekveellglvseekllelleailkkdleealklleellekgvdleklledliellrdlllvkkt 296
++ + + ++ll+ l + ++++ ++++++ l ++ ++k+++l++ ++ ++++ k +l+++++ +++l+++ + +++ l+ +
MMSYN1_0047 519 YKNQIHNIEQLLEDLFLQDDNQLVNAQIASELFMLLDSKIISLTNDVIVLKTQT--KAQANLINDSMLDNHVLQQIYNWFKKPYLIFAI 605
355667778888888888888888888888888888888888888876644433..233344444444455555555555554433333 PP
>> TIGR00678 holB: DNA polymerase III, delta' subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 160.6 0.5 1.3e-50 7.5e-48 3 172 .. 29 203 .. 27 219 .. 0.90
Alignments for each domain:
== domain 1 score: 160.6 bits; conditional E-value: 1.3e-50
TIGR00678 3 alkralekgrlahAlLfaGpeGvGkealaealakallCekeeeeeacgeckscrrieagnHPDllvlepegqkikvdqvreleeelsktplesgrrvv 100
l+++++ +r++hAlLf+G++G+Gk+++a+ +ak+++C + ++++ac++c++c++ ++++ D++ ++ ++ +vd++re+++++s+ pl+s+++v+
MMSYN1_0047 29 ILEKQIKDNRINHALLFSGQRGTGKTSVARIFAKTINCLNLTNSTACEQCNNCKLANQNQLIDIIEIDAASN-NGVDEIREIKNSVSTLPLNSKYKVY 125
688999**************************************************************9665.5************************ PP
TIGR00678 101 iiedaealneaaaNaLLKtLEEPpektlflLisespekllpTirSRcqrlslqplseeelaevleeqgkee......e 172
ii++++ l+++a NaLLKtLEEPp ++f+L +++ +k+ +Ti SRcq ++++ ++++l++ l+ ++e e
MMSYN1_0047 126 IIDEVHMLTKQAFNALLKTLEEPPVYAIFILATTEFNKIPQTILSRCQIFNFTKIDKNSLKNRLQYIANQEnyqiekE 203
************************************************************999986533332333334 PP
>> TIGR01128 holA: DNA polymerase III, delta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.0 6.8 4.7e-13 2.7e-10 46 222 .. 106 278 .. 76 295 .. 0.86
2 ? -2.2 0.2 0.86 4.8e+02 211 243 .. 527 558 .. 500 636 .. 0.65
Alignments for each domain:
== domain 1 score: 38.0 bits; conditional E-value: 4.7e-13
TIGR01128 46 weqlleeaqtlplFserrlvvvknpekktgakglkaLeeylenpppdtlllieapkldkrkkktkwlknakvvecktpkeeelpkwiqarlkelglki 143
+ ++ ++++tlpl s+ ++ ++++ +t ++ +aL++ le+pp + ++ +++k + l +++++ +++ + l++ +q+++++ + +i
MMSYN1_0047 106 IREIKNSVSTLPLNSKYKVYIIDEVHMLT-KQAFNALLKTLEEPPVYAIFILATTEFNKIPQT--ILSRCQIFNFTKIDKNSLKNRLQYIANQENYQI 200
445899*********************88.5889*******************9988776665..6669***************************** PP
TIGR01128 144 dneavqlLaelvegnllaiaqeLekLallapdgkitledveeavsdsarfnvfdlvdailegkaaralrilkgLlkege 222
++e+++ + +l eg l+ + + Le+L+l + d it+++++++ + ++ +++v l++++ + +++ ++g+
MMSYN1_0047 201 EKEVLDEMFYLSEGSLRDAINILEQLMLAT-DDLITIKTLKSIFLIATKQEQLQVVHQSLNNNTSFIISYFQKANDQGM 278
**************************9865.5679*******************9999999998877777776666665 PP
== domain 2 score: -2.2 bits; conditional E-value: 0.86
TIGR01128 211 lrilkgLlkegeepliLlalltrqlrlllqlkr 243
++l++L+ ++ + ++ a ++++l +ll k+
MMSYN1_0047 527 EQLLEDLFLQD-DNQLVNAQIASELFMLLDSKI 558
44444444444.333344444444444444443 PP
>> TIGR00635 ruvB: Holliday junction DNA helicase RuvB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.9 1.0 2.8e-11 1.6e-08 4 206 .. 18 227 .. 15 290 .. 0.73
2 ? -3.7 0.1 2 1.1e+03 154 182 .. 463 492 .. 462 503 .. 0.51
Alignments for each domain:
== domain 1 score: 31.9 bits; conditional E-value: 2.8e-11
TIGR00635 4 eefiGqekvkeklqlfikaakkrkealdhv.llyGPPGlGkttlakiiakelg.......vklkitsgpalekpgDlaailtaleegdvlfiDeihrl 93
+ G++++ke l+ ik ++ ++h l++G G Gkt++a+i ak+++ + ++ + +l ++ l+ i+ ++++ + +Dei +
MMSYN1_0047 18 NSVAGHNNIKEILEKQIK-----DNRINHAlLFSGQRGTGKTSVARIFAKTINclnltnsTACEQCNNCKLANQNQLIDII-EIDAASNNGVDEIREI 109
556677777777776665.....556677515679***************9973222222345556667788888888887.588888899******* PP
TIGR00635 94 skaveel.lypamedfkld...ivigkgpaaksvrldlapf..tlvGattraGkltsPLrdrfgiverlefYseeeleeivkrsaklleleieeeaal 185
+++v l l + + +d ++ + ++a l+ +p ++ att + k+ + + +r i ++ +++ l++ ++ a++ + +ie+e
MMSYN1_0047 110 KNSVSTLpLNSKYKVYIIDevhMLTKQAFNALLKTLEEPPVyaIFILATTEFNKIPQTILSRCQIF-NFTKIDKNSLKNRLQYIANQENYQIEKEVLD 206
****9875666677776653326678899999999999986335789***************9875.677789999********************** PP
TIGR00635 186 eiarrsrgtprianrllrrvr 206
e+ s g r a+++l ++
MMSYN1_0047 207 EMFYLSEGSLRDAINILEQLM 227
**************9998842 PP
== domain 2 score: -3.7 bits; conditional E-value: 2
TIGR00635 154 erlefYseee..leeivkrsaklleleieee 182
++++fY+++e + ei ++ + l+++ + +
MMSYN1_0047 463 NEFDFYNQKEqtIDEIC-KTLSELKIKFNIH 492
67899988763233443.3334444444443 PP
>> TIGR02881 spore_V_K: stage V sporulation protein K
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.9 0.0 2.7e-07 0.00015 33 71 .. 31 69 .. 19 80 .. 0.87
2 ? -1.7 0.1 0.52 2.9e+02 173 201 .. 175 203 .. 131 238 .. 0.51
3 ? -0.5 0.5 0.22 1.3e+02 174 248 .. 316 388 .. 285 394 .. 0.70
Alignments for each domain:
== domain 1 score: 18.9 bits; conditional E-value: 2.7e-07
TIGR02881 33 eeglkaekqvlhmifkGnPGtGkttvarllaklfkelnv 71
e+++k++++ ++f G GtGkt+var+ ak ++ ln+
MMSYN1_0047 31 EKQIKDNRINHALLFSGQRGTGKTSVARIFAKTINCLNL 69
678999999999********************9887775 PP
== domain 2 score: -1.7 bits; conditional E-value: 0.52
TIGR02881 173 ldfpdytveelleiakkmveereykltee 201
++f + + + l + ++ + ++ +y++ +e
MMSYN1_0047 175 FNFTKIDKNSLKNRLQYIANQENYQIEKE 203
34444444444444444444444444443 PP
== domain 3 score: -0.5 bits; conditional E-value: 0.22
TIGR02881 174 dfpdytveelleiakkmveereyklteeakaklreklakvksasekefsnarlvrnliekairrqavrllkksdv 248
+f+ ++++l+ +a+++ e y t+ a+ ++++ l ++ + ++ n ++v i+ +q +lk +d+
MMSYN1_0047 316 QFNSVNANNLFILADNLAE--AYFKTKAANISFNYLLLSLLKTINSNNNNLQTVSKTINTKQVEQNQEILKPNDI 388
4666677777777777765..466777777777777777777777777777777777777666666666666665 PP
>> TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.9 0.0 3.2e-06 0.0018 312 342 .. 39 70 .. 31 86 .. 0.81
Alignments for each domain:
== domain 1 score: 14.9 bits; conditional E-value: 3.2e-06
TIGR03922 312 skH.lllaGPPGtGkttiArvvakiyaGlgvl 342
+H ll+ G GtGkt++Ar++ak + l +
MMSYN1_0047 39 INHaLLFSGQRGTGKTSVARIFAKTINCLNLT 70
45537899****************99888775 PP
>> TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.9 0.1 7e-06 0.0039 19 216 .. 43 232 .. 28 242 .. 0.76
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 7e-06
TIGR02031 19 vairaraGtaktalaralaeiLpeieelegskaplvelplgvtedrLlGgiDveeslasgkrvlq...kgl....laeanrgvlyvdelnlldeslvn 109
+ ++++Gt+kt +ar +a++++ + +++ + + +++++L+ i+++++ ++g ++ +++ l + + v+++de+ +l++++ n
MMSYN1_0047 43 LLFSGQRGTGKTSVARIFAKTINCLNLTNSTACEQCNNCKLANQNQLIDIIEIDAASNNGVDEIReikNSVstlpL-NSKYKVYIIDEVHMLTKQAFN 139
56799**************99999987777777777777788999********99999997554412145422223.45568**************** PP
TIGR02031 110 rlldaldegvvivereGisvrePakfvLiatydpeegeealrehllDRlal.ivsleevaslearveivrlelaeeveeevndele.lakaqiekaRe 205
ll+ l+e v ++at + + +++ +l R + + + +++sl++r++ + + + ++e+ev de+ l ++ + +a +
MMSYN1_0047 140 ALLKTLEEPPV------------YAIFILATTEFNK----IPQTILSRCQIfNFTKIDKNSLKNRLQYIANQENYQIEKEVLDEMFyLSEGSLRDAIN 221
*******7664............2233445555544....7888899987625788899999999999999888888888877775145678888888 PP
TIGR02031 206 llkqVtiseeq 216
+l+q ++ +
MMSYN1_0047 222 ILEQLMLATDD 232
88888877765 PP
>> TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.2 0.0 0.00013 0.074 3 98 .. 17 118 .. 15 140 .. 0.70
Alignments for each domain:
== domain 1 score: 10.2 bits; conditional E-value: 0.00013
TIGR02030 3 fsaivGqeelklallltvidpkiGGvlvl.GdrGtgkstavralaallpeikavagcp....vnsapsareelceevraledss.kklaviekkvpvv 94
f ++ G +++k l ++ d +i l++ G+rGtgk++ r +a+ + ++ +++ n+ ++++l + + + s+ + e+k +v
MMSYN1_0047 17 FNSVAGHNNIKEILEKQIKDNRINHALLFsGQRGTGKTSVARIFAKTINCLNLTNSTAceqcNNCKLANQNQLIDIIEIDAASNnGVDEIREIKNSVS 114
88999******************98776659*************998776665443330011345555555555555554444412334555666666 PP
TIGR02030 95 dlpl 98
lpl
MMSYN1_0047 115 TLPL 118
6666 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (668 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 528 (0.117647); expected 89.8 (0.02)
Passed bias filter: 123 (0.0274064); expected 89.8 (0.02)
Passed Vit filter: 19 (0.00423351); expected 4.5 (0.001)
Passed Fwd filter: 8 (0.00178253); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.21
# Mc/sec: 4567.98
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0047 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0054 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0054.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0054/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0054 [L=149]
Description: redoxin 2=Generic Redox homeostasis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-07 29.3 0.0 1.8e-07 29.0 0.0 1.2 1 TIGR03137 AhpC: peroxiredoxin
Domain annotation for each model (and alignments):
>> TIGR03137 AhpC: peroxiredoxin
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.0 0.0 4.1e-11 1.8e-07 28 128 .. 18 122 .. 1 147 [. 0.76
Alignments for each domain:
== domain 1 score: 29.0 bits; conditional E-value: 4.1e-11
TIGR03137 28 dlkG.kwsvlvfypadftfvcpteledladkyeelkelgvevysvstdthfvhkawhdeseaigkikypllgdptkkltrnfdvlieeagla...... 118
+l G k +++fyp + t c e+ + +++ +e+k+lg +v vs d +de +++++ ll+d +k l ++f+ e l
MMSYN1_0054 18 SLVGqKGLIIFFYPKAKTSLCTLEVIEYQKHLDEFKQLGFNVVGVSQDEPNK----NDEFCCEQNLSFLLLSDLNKDLVNEFNLTSETIVLDdepfvk 111
455514568899************************************8654....4555566789****************9877655443111112 PP
TIGR03137 119 .ergtfvidpe 128
er+tfv+d +
MMSYN1_0054 112 yERSTFVLDNQ 122
26888988876 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (149 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 152 (0.0338681); expected 89.8 (0.02)
Passed bias filter: 90 (0.0200535); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1126.16
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0054 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0060 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0060.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0060/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0060 [L=274]
Description: membrane protein, putative 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (274 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 223 (0.0496881); expected 89.8 (0.02)
Passed bias filter: 60 (0.013369); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1967.38
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0060 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0061 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0061.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0061/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0061 [L=422]
Description: serRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-148 492.6 1.2 2.5e-148 492.5 1.2 1.0 1 TIGR00414 serS: serine--tRNA ligase
7.6e-17 59.4 0.5 1.4e-16 58.5 0.5 1.5 1 TIGR00418 thrS: threonine--tRNA ligase
5.4e-11 40.0 1.2 6e-06 23.3 0.0 2.9 3 TIGR00409 proS_fam_II: proline--tRNA ligase
3.4e-10 37.4 0.0 3.4e-10 37.4 0.0 1.9 2 TIGR00408 proS_fam_I: proline--tRNA ligase
1.8e-06 24.6 0.0 2.4e-05 20.9 0.0 2.1 2 TIGR00415 serS_MJ: serine--tRNA ligase
------ inclusion threshold ------
0.023 11.8 1.7 0.033 11.2 1.7 1.2 1 TIGR01554 major_cap_HK97: phage major capsid protein, HK97 f
Domain annotation for each model (and alignments):
>> TIGR00414 serS: serine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 492.5 1.2 3.4e-151 2.5e-148 1 417 [. 1 414 [. 1 415 [. 0.95
Alignments for each domain:
== domain 1 score: 492.5 bits; conditional E-value: 3.4e-151
TIGR00414 1 mldlkllrenlelvkeklkarglsve.idleklselddklkkllskieelqkkrnelskeigkkkaekkdk.ieelkkelkelkeeleeleaelkele 96
mld++ +++nl++v ++l++r++ dl+ ++e + k+k+ l+k e l++++n+lskeig +++k+k +e+ k+e+ +l+e++ +l+ el+ ++
MMSYN1_0061 1 MLDINYIEQNLDEVIQRLNKRNQQDYsEDLKYAVEKNFKRKEILVKSEALKSRKNQLSKEIGILIKDNKNKeAEKAKAEVVSLNEQIIKLDDELRIVN 98
9********************995431345556667778899999******************555444444899*********************** PP
TIGR00414 97 eeleekllkipnlvaesvpvgkdeednlevkkegekksfdfkpkdHvellekldlldferavkvagsrfvvlknkgaklerALinfmLdllekkgyse 194
e++ ekl+ ipnl+++++ gk++edn+e++k+ +++ + ++H+e++ kl+l+dfe++vk++gsrf ++++ g kl rA++ L+++ek++y+e
MMSYN1_0061 99 EQILEKLSYIPNLPHKDIYFGKSDEDNVEIRKTKHNPLLTH-STPHWEIATKLGLVDFEKGVKLSGSRFLIYTGLGSKLVRAIADILLKRHEKHNYKE 195
********************************999998865.68****************************************************** PP
TIGR00414 195 vvvPvlvnkellsgtgqlpkfeedifkvededlyLiaTaEvplanlhaneileeeelpikyaavspcFRkEAGsaGkdtkGliRvHqFeKvElvkfvk 292
+ P +vnk+ + gtgqlpkf ed+++v + yLi+T+Evpl+nlhaneil+ + lp+ky+++++cFR+EAGsaG+dtkG+iR+HqF+KvElvk+v+
MMSYN1_0061 196 IFCPLIVNKSAMLGTGQLPKFSEDMYQVG--EQYLIPTSEVPLTNLHANEILTYDMLPLKYTSFTQCFRQEAGSAGRDTKGMIRLHQFNKVELVKIVH 291
***************************96..67***************************************************************** PP
TIGR00414 293 peesaeeleeliedaekilkeLelPyrvvnlcsgdlgfsaakkyDlEvWlpaqnkYrEisScSnctdfQarrlkirykekkkkkkkyvhtlNgtalav 390
p++s++ele l++dae +l+ +lPyrvv+lcsgd+gfs+ak+yDlEvW+p qnkYrEisScSnctdfQar++++r+k+k+ k k+vhtlNg+++av
MMSYN1_0061 292 PDQSMNELELLVKDAEDVLNMFDLPYRVVELCSGDIGFSSAKTYDLEVWFPEQNKYREISSCSNCTDFQARNIQTRFKDKDG-KIKLVHTLNGSGVAV 388
******************************************************************************9987.66************* PP
TIGR00414 391 gRvlvailEnyqeedGkvevPevLrky 417
+R ++ailEny + + v +P +Lr+y
MMSYN1_0061 389 DRLIAAILENYWDGEKLV-LPTILRPY 414
************998777.9******9 PP
>> TIGR00418 thrS: threonine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 58.5 0.5 1.8e-19 1.4e-16 160 352 .. 130 323 .. 3 354 .. 0.83
Alignments for each domain:
== domain 1 score: 58.5 bits; conditional E-value: 1.8e-19
TIGR00418 160 eylkakeeakkrdHrklgkeleLfsfee...evgpGlvlwlpkGalirklledfvrekllkrgyeevetPiladlelweisghldkykermfrfkeee 254
+ +++ + +H ++ +l+L++fe+ +g+ +++++ G ++ + ++d + +++ k +y+e+ P +++++ + +g l k++e+m+++ e
MMSYN1_0061 130 KTKHNPLLTHSTPHWEIATKLGLVDFEKgvkLSGSRFLIYTGLGSKLVRAIADILLKRHEKHNYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQVGE-- 225
444444455667***************722245677899*****************************************************6333.. PP
TIGR00418 255 ekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEk..sG.eLvGLkRvRgftldDaHifctedQikeEiknalrliqkvlkklglseekv 349
+ +l p + + +++++y LPl+ + +++++R+E+ G +G+ R+ +f +++ dQ ++E++ ++ + +vl+ ++l v
MMSYN1_0061 226 --Q-YLIPTSEVPLTNLHANEILTYDMLPLKYTSFTQCFRQEAgsAGrDTKGMIRLHQFNKVELVKIVHPDQSMNELELLVKDAEDVLNMFDLPYRVV 320
..3.46677777788999************************832343489******************************************97777 PP
TIGR00418 350 els 352
el
MMSYN1_0061 321 ELC 323
775 PP
>> TIGR00409 proS_fam_II: proline--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.1 2.4 0.42 3.1e+02 273 322 .. 41 93 .. 6 134 .. 0.50
2 ! 23.3 0.0 8.1e-09 6e-06 39 211 .. 166 336 .. 157 365 .. 0.85
3 ! 14.0 0.0 5.3e-06 0.004 423 474 .. 362 414 .. 356 416 .. 0.91
Alignments for each domain:
== domain 1 score: -2.1 bits; conditional E-value: 0.42
TIGR00409 273 aekvvkallvkaveks.evlvallvrgddelnevkaknel..evaevlelate 322
+e vk+ k+ +++ ++ + +l++++++ + kak e+ ++++l++e
MMSYN1_0061 41 KEILVKSEALKSRKNQlSKEIGILIKDNKNKEAEKAKAEVvsLNEQIIKLDDE 93
22333443444444445555556666655544444444431122333333333 PP
== domain 2 score: 23.3 bits; conditional E-value: 8.1e-09
TIGR00409 39 lynylPlalrvlekvenivreemnkagaievllpalqsaelWqesgRwdkygeellrlkDrkerefvLgpthEEvitdlvkneiksYkqlPvnlYqiq 136
y l+ + + + i+ ++ +k++ e+ p +++++ +g + k++e++ ++ ++ L pt E +t+l +nei Y lP++ +
MMSYN1_0061 166 FLIYTGLGSKLVRAIADILLKRHEKHNYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQVG----EQY-LIPTSEVPLTNLHANEILTYDMLPLKYTSFT 258
566888999**********************************************9874....455.88***************************** PP
TIGR00409 137 tKfRDEi....RPRfGllRgREFimKDaYsFhsdeeslkatyqkldeaYkkifsrlgldfraveADsGaiGGskskEFv 211
+ fR E R G++R F + ++s+++ l + +++++ + l++r ve sG+iG s++k +
MMSYN1_0061 259 QCFRQEAgsagRDTKGMIRLHQFNKVELVKIVHPDQSMNELEL-LVKDAEDVLNMFDLPYRVVELCSGDIGFSSAKTYD 336
******766668889********99888888888888876555.5555599********************99988765 PP
== domain 3 score: 14.0 bits; conditional E-value: 5.3e-06
TIGR00409 423 kalkatfldeegkeq.vlemGCYGiGvsRlvsaivEqkrDekGiiWpkaiAPy 474
+ ++ f d++gk + v ++ G+ v Rl++ai+E D + ++ p+++ Py
MMSYN1_0061 362 RNIQTRFKDKDGKIKlVHTLNGSGVAVDRLIAAILENYWDGEKLVLPTILRPY 414
568899********955568999****************************99 PP
>> TIGR00408 proS_fam_I: proline--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.5 3.4 1.1 8.4e+02 370 425 .. 11 66 .. 2 105 .. 0.41
2 ! 37.4 0.0 4.5e-13 3.4e-10 102 280 .. 228 411 .. 145 415 .. 0.83
Alignments for each domain:
== domain 1 score: -3.5 bits; conditional E-value: 1.1
TIGR00408 370 ldeleekvke.lleelkedlfkkAkelveekvkeveel..eeikqalnekkgvvlvalk 425
lde+ +++++ +++ edl+ + ++ +++k v++ + k++l++ g+++ k
MMSYN1_0061 11 LDEVIQRLNKrNQQDYSEDLKYAVEKNFKRKEILVKSEalKSRKNQLSKEIGILI---K 66
4444444333123344455544444444433322222111333333333333222...2 PP
== domain 2 score: 37.4 bits; conditional E-value: 4.5e-13
TIGR00408 102 lRPtsEtvlynlykkwvksyrdLPlklnqivnvfRyEk....khtrPllRtrEfl.fkEaHtlhataeeaeeevlkildlYkelieelLaiPvlvgrk 194
l PtsE+ l nl++ + +y LPlk+ +++ fR E + t+ ++R+ f + +h + ++ +e + +++ +++++ + +P+ v
MMSYN1_0061 228 LIPTSEVPLTNLHANEILTYDMLPLKYTSFTQCFRQEAgsagRDTKGMIRLHQFNkVELVKIVHPD--QSMNELELLVKDAEDVLN-MFDLPYRVVEL 322
67***********************************7555578**********945555666766..567778888898999998.999***88888 PP
TIGR00408 195 sekekFaGaeytvaieaimpdg.ralqiatsHdLgqnFaktFeikfenkegekayayq.tsyGls.tRvigaliliHsDdkGLvlPpkv 280
+ ++ t+ +e +p++ + i+ + ++ a+ + +f++k+g+ ++++ + G++ +R+i+a++ D LvlP +
MMSYN1_0061 323 CSGDIGFSSAKTYDLEVWFPEQnKYREISSCSNCTDFQARNIQTRFKDKDGKIKLVHTlNGSGVAvDRLIAAILENYWDGEKLVLPTIL 411
88887666778*********995677788888888888*************7666664277888659*******************876 PP
>> TIGR00415 serS_MJ: serine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.7 0.0 0.021 15 196 274 .. 143 225 .. 120 252 .. 0.78
2 ! 20.9 0.0 3.2e-08 2.4e-05 313 426 .. 230 348 .. 225 361 .. 0.83
Alignments for each domain:
== domain 1 score: 1.7 bits; conditional E-value: 0.021
TIGR00415 196 ptevaeklgwvk.....kfpgrgqwfytpkitalfraleeliveevvkklgfveclfpklipleimykmryleglpegmyyvsa 274
e+a klg v k+ g +yt + l ra+ ++++++ k ++e + p ++ m l + e my v
MMSYN1_0061 143 HWEIATKLGLVDfekgvKLSGSRFLIYTGLGSKLVRAIADILLKRHEK-HNYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQVGE 225
45788999988533344778888889*****************99765.68****************************98864 PP
== domain 2 score: 20.9 bits; conditional E-value: 3.2e-08
TIGR00415 313 paqcepfyqflegevvdvd.kpvkffdrsgwtyrweagga....kgldrvneflrvelvwlaepeeveeirdktlklaedlaekleleyy.vevgddp 404
p+ p+ ++ +e++ d +p+k+ +r eag a kg+ r+++f +velv + +p++ + + +k aed+ + ++l y ve+
MMSYN1_0061 230 PTSEVPLTNLHANEILTYDmLPLKYTS-FTQCFRQEAGSAgrdtKGMIRLHQFNKVELVKIVHPDQSMNELELLVKDAEDVLNMFDLPYRvVELCSGD 326
566667888888899996526777654.55689999997544449**********************9999*****************9626998888 PP
TIGR00415 405 fylegrkkeergiefpdvpkye 426
+ + k + + fp+ ky
MMSYN1_0061 327 IGFSSAKTYDLEVWFPEQNKYR 348
888999999999****999995 PP
>> TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.2 1.7 4.5e-05 0.033 2 55 .. 48 104 .. 47 137 .. 0.83
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 4.5e-05
TIGR01554 2 kelreklaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleea...a 55
++l+ + ++l ke+ l +d+k++eae++k+e+ +l+++i kl++e++ +e+ +
MMSYN1_0061 48 EALKSRKNQLSKEIGILIKDNKNKEAEKAKAEVVSLNEQIIKLDDELRIVNEQileK 104
5789999****************************************9999885440 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (422 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 403 (0.089795); expected 89.8 (0.02)
Passed bias filter: 178 (0.0396613); expected 89.8 (0.02)
Passed Vit filter: 18 (0.0040107); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.22
# Mc/sec: 2754.59
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0061 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0063 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0063.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0063/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0063 [L=324]
Description: putative tRNA-dihydrouridine synthase B 2=Generic tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.3e-116 384.4 2.0 1e-115 384.3 2.0 1.0 1 TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 fam
1.8e-28 97.8 1.4 5.6e-28 96.2 1.4 1.7 1 TIGR00742 yjbN: tRNA dihydrouridine synthase A
4.4e-17 60.1 0.4 2.8e-13 47.5 0.6 2.3 2 TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family
4e-13 47.4 1.1 1.2e-12 45.9 0.5 1.9 2 TIGR00736 nifR3_rel_arch: putative TIM-barrel protein
3.5e-07 27.8 0.3 8.1e-07 26.6 0.3 1.7 1 TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
2.2e-06 24.3 0.0 3.2e-06 23.8 0.0 1.3 1 TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE famil
2.4e-06 25.0 0.1 4.4e-06 24.1 0.1 1.5 1 TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclas
3.8e-06 24.0 0.1 7.1e-06 23.1 0.1 1.4 1 TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomeras
2.2e-05 22.1 2.8 0.00077 17.0 0.4 2.6 3 TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, syntha
0.00012 19.4 2.1 0.00016 19.0 0.1 2.3 3 TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein]
0.00013 18.5 0.0 0.0002 17.9 0.0 1.2 1 TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE famil
Domain annotation for each model (and alignments):
>> TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 384.3 2.0 2.5e-118 1e-115 1 316 [. 3 323 .. 3 324 .] 0.97
Alignments for each domain:
== domain 1 score: 384.3 bits; conditional E-value: 2.5e-118
TIGR00737 1 ignleLksrvvlaPlagvtdlafRrlvkeyeaglvvsEmvssealveksektkklleiaedekpisvQlagsdpdvmaeaAk.iaeelgadiiDlNmG 97
i ++++ ++vv+ P+agv++ afR ++k+ +a+lv++Emvs+ ++v++++kt ++l+++e e+p+s+Q++g d d+ +a + i+++ diiDlN+G
MMSYN1_0063 3 IRDIQIDGKVVQGPMAGVSNEAFRIISKQHGASLVYAEMVSVAGMVHDNKKTLNMLNVNEIEHPMSMQIFGNDVDEFIKATQwIEKNVDCDIIDLNLG 100
789*********************************************************************************************** PP
TIGR00737 98 CPvkkit.kkgaGsallkepeliekivkavveavevPVTvKiRiGwdeehinveeaariaedaGaqavalHgRTraqlyeGeanwdiiarvkqavkiP 194
CP++k+ ++++Gsallk+p+li++ivk+vv+ + PVT KiR+Gwd++ n++e+a+++e+aGa+a+a+H+RTr +y G+a+w+ i++vkqav+iP
MMSYN1_0063 101 CPAPKVAiRSQSGSALLKTPDLIYEIVKNVVKNTTKPVTAKIRLGWDKNSVNAVEVAKLIEKAGASAIAVHARTRNDFYTGHADWEKIKEVKQAVSIP 198
******75899*************************************************************************************** PP
TIGR00737 195 VignGDitspedAkamLeetgadgvligRgalGkPwlfkeieqylttgklkkaptlaeklaailrhlqlladyygeekglreaRKhvawYlkglkkk. 291
VignGD+ +++ Ak+mL+etg+d+v+++R+++G+Pw+f +i++yl+tgk+ ++p+++e ++++l+hl+ll + + e+++++e RKh++wYl l++k
MMSYN1_0063 199 VIGNGDVIDAKSAKKMLDETGCDAVMVSRACQGNPWIFDQINHYLKTGKELEKPSFEEWKTTVLQHLDLLVKLKTEQHAIKEFRKHLTWYLDVLNNKa 296
******************************************************************************************98776651 PP
TIGR00737 292 ..aalreelakiksvqevkellddfee 316
+ l+e+++ki+++++v+e++++++e
MMSYN1_0063 297 ltKILKEKANKIETIKDVEEIIKEYKE 323
116799*****************9986 PP
>> TIGR00742 yjbN: tRNA dihydrouridine synthase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 96.2 1.4 1.4e-30 5.6e-28 6 296 .. 15 302 .. 10 321 .. 0.79
Alignments for each domain:
== domain 1 score: 96.2 bits; conditional E-value: 1.4e-30
TIGR00742 6 aPmlditdrhfryllrllskkvllytemvtakaiihgdkk..kllkfseeekPvalqlggsdpedlakcaklaee.fgydeinlnvGcPsdrvq.ngn 99
Pm ++++ fr + ++ +l+y+emv+ ++h +kk ++l+ +e e+P+++q+ g+d ++ k+ + e+ + d i+ln+GcP+ +v ++
MMSYN1_0063 15 GPMAGVSNEAFRIISKQHG-ASLVYAEMVSVAGMVHDNKKtlNMLNVNEIEHPMSMQIFGNDVDEFIKATQWIEKnVDCDIIDLNLGCPAPKVAiRSQ 111
6999999999999998876.5799************99883357999***********************9888879***************974689 PP
TIGR00742 100 fGaclmanadlvadivkamkeaveiPvtvktriGideldsyeelvdfveivsdkGikefivharkawlkGlsPkenreiPplryervyqlkkdfpnll 197
G+ l+ +dl+ +ivk++ +++ +Pvt k r+G d++ s + v+ + ++++G vhar +++ + ++e++ ++k+
MMSYN1_0063 112 SGSALLKTPDLIYEIVKNVVKNTTKPVTAKIRLGWDKN-SVN-AVEVAKLIEKAGASAIAVHART--------RNDFYTGHADWEKIKEVKQAVSI-P 198
9*********************************9875.555.4688999*************96........57777788999999999987765.5 PP
TIGR00742 198 ieinGGiksleeikkhlsf..vdsvmvGreayenPyllaavdrelfdetdei.l...trkeiveqmlpyieeelsqglslnkivrhllglfqskegak 289
+ nG + + +kk l+ d+vmv r+ nP ++ ++++ l ++ + + k v q l+ + + +++ + + +hl + + k
MMSYN1_0063 199 VIGNGDVIDAKSAKKMLDEtgCDAVMVSRACQGNPWIFDQINHYLKTGKELEkPsfeEWKTTVLQHLDLLVKLKTEQHAIKEFRKHLTW-YLDVLNNK 295
556**************86337*******************998765444321211133445555555555555556777777777633.22333334 PP
TIGR00742 290 kfrrnls 296
+ l
MMSYN1_0063 296 ALTKILK 302
4444444 PP
>> TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.5 0.6 7e-16 2.8e-13 85 188 .. 59 170 .. 34 176 .. 0.85
2 ! 10.0 0.0 0.00019 0.076 226 280 .. 188 243 .. 185 257 .. 0.87
Alignments for each domain:
== domain 1 score: 47.5 bits; conditional E-value: 7e-16
TIGR01037 85 vreevdtkliasvyGeseeefaevaeklekadkyvdaleLnvsCPhvkg.....aGieiGqdpelsaevvkavkekvdkPvlakLs....Pnvtdive 173
+e+++++ ++++G++++ef ++++ +ek + d+++Ln+ CP k G ++ + p+l +e+vk+v + + kPv+ak+ n + ve
MMSYN1_0063 59 NVNEIEHPMSMQIFGNDVDEFIKATQWIEKNVD-CDIIDLNLGCPAPKVairsqSGSALLKTPDLIYEIVKNVVKNTTKPVTAKIRlgwdKNSVNAVE 155
4578888899*******************8888.9*********986642223479999*************************85333368999*** PP
TIGR01037 174 lakaveeaGaDgltl 188
+ak +e+aGa ++++
MMSYN1_0063 156 VAKLIEKAGASAIAV 170
**********99986 PP
== domain 2 score: 10.0 bits; conditional E-value: 0.00019
TIGR01037 226 vydlykkldiPiiGvGGitsaeDalefl.laGasavqvGtavyyegkvfkkiieel 280
+ ++ + + iP+iG G + +a+ a l G av v a ++ +f +i + l
MMSYN1_0063 188 IKEVKQAVSIPVIGNGDVIDAKSAKKMLdETGCDAVMVSRACQGNPWIFDQINHYL 243
568999******************9988448***********99999999987766 PP
>> TIGR00736 nifR3_rel_arch: putative TIM-barrel protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.4 0.0 0.8 3.3e+02 5 221 .. 21 46 .. 17 61 .. 0.52
2 ! 45.9 0.5 2.9e-15 1.2e-12 77 223 .. 74 229 .. 56 236 .. 0.79
Alignments for each domain:
== domain 1 score: -1.4 bits; conditional E-value: 0.8
TIGR00736 5 sdaefCrklkdlfalvtlGGynadretlkaarkiakrGrkefsfdleeleseikkeakkikerakvavnvrisaleeeldvelsvaesadiieinahC 102
s+
MMSYN1_0063 21 SNEA---------------------------------------------------------------------------------------------- 24
4444.............................................................................................. PP
TIGR00736 103 rqPeiteiGiGqellknkelLkefvakvkkarkpvfvkirgnvikldevkvarklvdagvdaihvdalkPGedradlelvklvsevkndkiviGnnsv 200
+
MMSYN1_0063 25 -------------------------------------------------------------------------------------------------F 25
.................................................................................................4 PP
TIGR00736 201 ddiesak.ellkagadlvsvar 221
+ i + + + l + a++vsva
MMSYN1_0063 26 RIISKQHgASLVY-AEMVSVAG 46
4444333122333.55666554 PP
== domain 2 score: 45.9 bits; conditional E-value: 2.9e-15
TIGR00736 77 saleeeldvelsvaesa..diieinahCrqPeit.eiGiGqellknkelLkefvakvk.karkpvfvkirgnv..ikldevkvarklvdagvdaihvd 168
++++e + + + + + dii++n C P ++ G llk ++l+ e+v +v +++kpv kir+ +++ v+va+ + +ag ai v
MMSYN1_0063 74 NDVDEFIKATQWIEKNVdcDIIDLNLGCPAPKVAiRSQSGSALLKTPDLIYEIVKNVVkNTTKPVTAKIRLGWdkNSVNAVEVAKLIEKAGASAIAVH 171
56666655555555554338***********98525679***************99875899********9641156788999999999******999 PP
TIGR00736 169 alkPGe...dradlelvklvsevkndkiviGnnsvddiesakellk.agadlvsvarav 223
a + + ++ad e +k v + + viGn v d sak++l g+d+v v+ra
MMSYN1_0063 172 ARTRNDfytGHADWEKIKEVKQAVS-IPVIGNGDVIDAKSAKKMLDeTGCDAVMVSRAC 229
9766542225579999999998887.669****************6379********96 PP
>> TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.6 0.3 2e-09 8.1e-07 145 227 .. 143 226 .. 105 230 .. 0.91
Alignments for each domain:
== domain 1 score: 26.6 bits; conditional E-value: 2e-09
TIGR03572 145 dngrkkteldlvelareleelgagEillnsiDrdGtrkGy.dlelvktvskavkiPvialGGagslddlvevvleagasavaaa 227
+ g k ++ ve+a+ +e++ga i +++ r+ +G+ d e +k+v++av+iPvi +G + ++ +++++ e+g++av ++
MMSYN1_0063 143 RLGWDKNSVNAVEVAKLIEKAGASAIAVHARTRNDFYTGHaDWEKIKEVKQAVSIPVIGNGDVIDAKSAKKMLDETGCDAVMVS 226
567778899*****************************9879***************************************876 PP
>> TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.8 0.0 7.8e-09 3.2e-06 277 326 .. 189 238 .. 152 250 .. 0.89
Alignments for each domain:
== domain 1 score: 23.8 bits; conditional E-value: 7.8e-09
TIGR03997 277 aaireavdlPvvavGrikdpaqaervlaeGqadlvgvvRaqiaDPelaak 326
++++av++Pv++ G + d++ a+++l+e +d v v Ra +P++ +
MMSYN1_0063 189 KEVKQAVSIPVIGNGDVIDAKSAKKMLDETGCDAVMVSRACQGNPWIFDQ 238
5799************************************9999987655 PP
>> TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.1 0.1 1.1e-08 4.4e-06 143 247 .. 139 244 .. 96 248 .. 0.88
Alignments for each domain:
== domain 1 score: 24.1 bits; conditional E-value: 1.1e-08
TIGR00735 143 evtikgGrestdldvvewakeveelGaGeilltsmdkdGtksGy.dlellkkvkeavkiPviasgGaGkaehleeaflkgkadaaLaasvfhkrelti 239
+ +i+ G ++ +++ve ak +e+ Ga i + + ++ +G+ d e +k+vk+av+iPvi g + a+ ++ + ++ da++++ +
MMSYN1_0063 139 TAKIRLGWDKNSVNAVEVAKLIEKAGASAIAVHARTRNDFYTGHaDWEKIKEVKQAVSIPVIGNGDVIDAKSAKKMLDETGCDAVMVSRACQGNPWIF 236
56788899999**********************9999888888769**************************************99988777777777 PP
TIGR00735 240 eevkeyla 247
+++ +yl+
MMSYN1_0063 237 DQINHYLK 244
77777775 PP
>> TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.1 0.1 1.8e-08 7.1e-06 85 246 .. 106 261 .. 93 278 .. 0.77
Alignments for each domain:
== domain 1 score: 23.1 bits; conditional E-value: 1.8e-08
TIGR02151 85 ialavGSqraalkkpevaetfevvreeapn..illlaNigaeqlvekvgveeaqeaidlieadalaiHlNvlqElvqpeGdrnfkgvlekiaeiasav 180
+a+ S +a+lk+p+++ +e+v+++ +n ++ a i ++v + e++++i++ a a+a+H + + G +++ ki+e+ +av
MMSYN1_0063 106 VAIRSQSGSALLKTPDLI--YEIVKNVVKNttKPVTAKIRLGWDKNSVNAVEVAKLIEKAGASAIAVHARTRNDFY--TGHADWE----KIKEVKQAV 195
67777788999****876..6668876544116789998888887888899********************99987..5888898....9******** PP
TIGR02151 181 svPvivKEvGfGlskevake.ladagvkaidvaGaG.GTsfa..kvEnarakeskkkalaeafsdwGipt 246
s+Pvi G +++++ak+ l ++g +a+ v+ a G ++ ++ ++ + ++ ++ f++w ++
MMSYN1_0063 196 SIPVI--GNGDVIDAKSAKKmLDETGCDAVMVSRACqGNPWIfdQINHYLKTGKELEK--PSFEEWKTTV 261
****9..46888***99987256799***99997642655543367777766655555..7777776655 PP
>> TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.8 0.0 2.1 8.5e+02 248 283 .. 35 70 .. 20 74 .. 0.63
2 ! 5.1 0.0 0.0083 3.4 44 78 .. 108 146 .. 86 156 .. 0.77
3 ! 17.0 0.4 1.9e-06 0.00077 17 92 .. 151 222 .. 148 239 .. 0.78
Alignments for each domain:
== domain 1 score: -2.8 bits; conditional E-value: 2.1
TIGR00343 248 tthydepevlaevskdlGeamkGieieeiseeerlq 283
y e +a + +d ++++ ++++ei++ + +q
MMSYN1_0063 35 SLVYAEMVSVAGMVHDNKKTLNMLNVNEIEHPMSMQ 70
445666666666666666677777777777766666 PP
== domain 2 score: 5.1 bits; conditional E-value: 0.0083
TIGR00343 44 iraaGgvarmsdpklikeildav....sipvmakvriGh 78
ir+ g a + p li ei++ v + pv ak+r+G
MMSYN1_0063 108 IRSQSGSALLKTPDLIYEIVKNVvkntTKPVTAKIRLGW 146
77778888888888777766554333378********96 PP
== domain 3 score: 17.0 bits; conditional E-value: 1.9e-06
TIGR00343 17 vvnaeqakiaeeaGavavmalervpadiraaGgvarmsdpklikeildavsipvmakvriGhivea.qvlealevdy 92
v ++e ak+ e+aGa a+ r d + +d ++ike+ +avsipv+ + a ++l++ + d
MMSYN1_0063 151 VNAVEVAKLIEKAGASAIAVHARTRNDFYT-----GHADWEKIKEVKQAVSIPVIGNGDVIDAKSAkKMLDETGCDA 222
67899************9988888888754.....469****************98866544444414566666665 PP
>> TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.3 0.0 1.2 4.9e+02 9 27 .. 7 25 .. 4 82 .. 0.67
2 ! 19.0 0.1 3.9e-07 0.00016 116 180 .. 151 215 .. 119 230 .. 0.88
3 ? -2.1 0.1 1.1 4.4e+02 241 241 .. 303 303 .. 256 322 .. 0.50
Alignments for each domain:
== domain 1 score: -2.3 bits; conditional E-value: 1.2
TIGR03151 9 eieyPilqGgmawvatael 27
+i+ ++qG ma v++ +
MMSYN1_0063 7 QIDGKVVQGPMAGVSNEAF 25
5666777777777776544 PP
== domain 2 score: 19.0 bits; conditional E-value: 3.9e-07
TIGR03151 116 vasvalakrleklGadaviaeGmeaGGhiGelttlalvpqvvdavsiPviaaGGiadgrGlaaal 180
v +v +ak +ek+Ga a+ + + +++v +avsiPvi G + d + + l
MMSYN1_0063 151 VNAVEVAKLIEKAGASAIAVHARTRNDFYTGHADWEKIKEVKQAVSIPVIGNGDVIDAKSAKKML 215
78899****************9999999999999***********************98766555 PP
== domain 3 score: -2.1 bits; conditional E-value: 1.1
TIGR03151 241 e 241
e
MMSYN1_0063 303 E 303
1 PP
>> TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.9 0.0 4.9e-07 0.0002 251 316 .. 171 233 .. 134 245 .. 0.77
Alignments for each domain:
== domain 1 score: 17.9 bits; conditional E-value: 4.9e-07
TIGR03996 251 sdayrpdfatppafntdlareiraavagavpvvlqGsvvdiadarralddavadvvemtraqiadp 316
+ r df t a + + +e+++av+ +pv+ +G v+d+ a++ ld++ +d v ++ra +p
MMSYN1_0063 171 HARTRNDFYTGHA-DWEKIKEVKQAVS--IPVIGNGDVIDAKSAKKMLDETGCDAVMVSRACQGNP 233
3567888888765.77889********..********************************88877 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (324 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 443 (0.0987077); expected 89.8 (0.02)
Passed bias filter: 154 (0.0343137); expected 89.8 (0.02)
Passed Vit filter: 25 (0.00557041); expected 4.5 (0.001)
Passed Fwd filter: 11 (0.00245098); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 11 [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 2022.95
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0063 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0064 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0064.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0064/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0064 [L=500]
Description: lysRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-198 658.3 6.0 1.8e-198 658.1 6.0 1.0 1 TIGR00499 lysS_bact: lysine--tRNA ligase
3.3e-65 218.5 0.1 4.7e-65 218.0 0.1 1.2 1 TIGR00462 genX: EF-P lysine aminoacylase GenX
5.9e-44 148.6 4.1 2.1e-43 146.8 4.1 1.7 1 TIGR00458 aspS_nondisc: aspartate--tRNA(Asn) ligase
1.6e-38 130.4 2.3 1.4e-26 90.9 0.5 2.1 2 TIGR00459 aspS_bact: aspartate--tRNA ligase
2.4e-27 93.8 0.7 3.2e-27 93.4 0.7 1.1 1 TIGR00457 asnS: asparagine--tRNA ligase
1.8e-05 22.1 0.2 0.068 10.4 0.2 3.5 2 TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal r
0.00011 19.6 0.4 0.027 11.6 0.0 2.6 3 TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
0.0017 15.4 0.0 0.27 8.1 0.0 2.5 2 TIGR00442 hisS: histidine--tRNA ligase
Domain annotation for each model (and alignments):
>> TIGR00499 lysS_bact: lysine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 658.1 6.0 3.2e-201 1.8e-198 3 495 .. 8 499 .. 6 500 .] 0.98
Alignments for each domain:
== domain 1 score: 658.1 bits; conditional E-value: 3.2e-201
TIGR00499 3 ndelqqrlekleelreegeepyln.klertkeakelqeeyaklkne.eleekelevsiaGRikakR.smgkatFitlqdesgklqlyvnkdklsedve 97
+++ r++k ++l e++++py+ +++r+++ +l+e+y++ ++e l+ +++ v +aGRik R +++ka+F+++ d+++++qlyv+ d++ +++
MMSYN1_0064 8 SEQELVRRNKYKTLVEQNKDPYKItNWKRNTTLLKLNEKYKDYSKEdLLNLNQELVVVAGRIKLYReAGKKAAFVNIDDQDSSIQLYVRLDEIGDQSF 105
5677899****************999*****************9993455668999**********89999************************999 PP
TIGR00499 98 eleeklldlGDiigvkGklkktktgelsvkveelklltkalrplPekfhGlkdqEtryrkRylDlivnkesrqtflkRskiikaiRkfldergflEvE 195
e+ +++ dlGDiigvkG +++t +gels+ ++e+ ll+kalrplP+k+ G++d E++yr+Ry+Dli+n+++r+tf R+kii+++ +fld++g++EvE
MMSYN1_0064 106 EDFRNF-DLGDIIGVKGIMMRTDHGELSIRCKEVVLLSKALRPLPDKHAGIQDIEEKYRRRYVDLIMNHDVRKTFQARTKIIRTLQNFLDNKGYMEVE 202
999998.******************************************************************************************* PP
TIGR00499 196 tPilqsisgGAsAkPFithhnaldvdlylRiApElyLKrLivgGlekvyEigrvFRnEGvdttHnpEFttiElYqayadyedllelteellktlvkel 293
tPil+s +gGAsAkPFith+n l++d+ylRiA+El+LKrLivgG+e vyEigr+FRnEG++t+HnpEFt+iElY ay d+ l++ltee+++ ++
MMSYN1_0064 203 TPILHSLKGGASAKPFITHYNVLNTDVYLRIATELHLKRLIVGGFEGVYEIGRIFRNEGMSTRHNPEFTSIELYVAYEDMFFLMDLTEEIFRVCNAAV 300
************************************************************************************************** PP
TIGR00499 294 lgtlkikykeeeldlkkpvkkitmleaikkidketgislddlkdsetakalakklaievaekslslgkilnklfeefvEetliqPtfiteyPaeisPL 391
+ + +i+y++ ++dl+kp+k+++m++ ik + tg+++++ + ++a +lakk++++v++++ s+g+i+n ++eefvE+t+++Ptf++++P+eisPL
MMSYN1_0064 301 NSSSIIEYNNVKIDLSKPFKRLHMVDGIK---QVTGVDFWQEMTVQQALELAKKHKVHVEKHQESVGHIINLFYEEFVESTIVEPTFVYGHPKEISPL 395
*****************************...99**************************************************************** PP
TIGR00499 392 AkrddenpelteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDedfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllF 489
Ak+++++p++t+RFElFi g+E+ana+sElndp+dq erf++q++e+++g+dea+ +D df+eale+ +ppt+G+GiGiDRlvmllt+s+si+dvllF
MMSYN1_0064 396 AKSNPSDPRFTDRFELFILGREYANAFSELNDPIDQYERFKAQIEEESKGNDEANDMDIDFIEALEHAMPPTAGIGIGIDRLVMLLTNSESIKDVLLF 493
************************************************************************************************** PP
TIGR00499 490 palreq 495
p+++++
MMSYN1_0064 494 PQMKPR 499
***985 PP
>> TIGR00462 genX: EF-P lysine aminoacylase GenX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 218.0 0.1 8.4e-68 4.7e-65 2 304 .] 180 493 .. 179 493 .. 0.94
Alignments for each domain:
== domain 1 score: 218.0 bits; conditional E-value: 8.4e-68
TIGR00462 2 kkrakllaaiRafFaergvlEvetpllseapvtdvhlealktelleeekekeklyLqtSPEyamKrLLaagsgkifqlakvfRneergrlHnpEFtmL 99
++r k+++++ +f++++g++Evetp+l + ++ + +++ t++ + ++++yL+ E+++KrL++ g + +++++++fRne ++++HnpEFt +
MMSYN1_0064 180 QARTKIIRTLQNFLDNKGYMEVETPILHSLKGG-ASAKPFITHY---NVLNTDVYLRIATELHLKRLIVGGFEGVYEIGRIFRNEGMSTRHNPEFTSI 273
78*************************998765.4567777774...556899********************************************* PP
TIGR00462 100 EwYrvgadleelmeeveellqevle...............deeaeverlsyaeaferylgidplta.sleelkeaaekag.eaaseeedredlldlll 180
E Y + d+ lm+ +ee+++++ + d +++++rl + + +++++g+d + + ++ e+a+k++ ++ +++e+ ++++l
MMSYN1_0064 274 ELYVAYEDMFFLMDLTEEIFRVCNAavnsssiieynnvkiDLSKPFKRLHMVDGIKQVTGVDFWQEmTVQQALELAKKHKvHVEKHQESVGHIINLFY 371
*********************999999************************************66547777778888888678888888999999999 PP
TIGR00462 181 vekvepklgkerptflydyPasqaaLarikkddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpec 278
e ve ++ +ptf+y +P++ + La+ +++d+r+ +RfEl+i g E aN+f+EL+d+ q +Rf+++ +e ++ + e ++d ++++ale+ +p++
MMSYN1_0064 372 EEFVESTIV--EPTFVYGHPKEISPLAKSNPSDPRFTDRFELFILGREYANAFSELNDPIDQYERFKAQIEEESKGNDEANDMDIDFIEALEHAMPPT 467
999***997..79************************************************************************************* PP
TIGR00462 279 sGvAlGlDRLlmlalgaesieevlaf 304
+G+ +G+DRL+ml++++esi++vl f
MMSYN1_0064 468 AGIGIGIDRLVMLLTNSESIKDVLLF 493
***********************986 PP
>> TIGR00458 aspS_nondisc: aspartate--tRNA(Asn) ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 146.8 4.1 3.7e-46 2.1e-43 12 423 .. 60 497 .. 49 500 .] 0.78
Alignments for each domain:
== domain 1 score: 146.8 bits; conditional E-value: 3.7e-46
TIGR00458 12 gkevllrgwvheirdlGa.lifvllrdregliqilvkkkkvskelfklikklkkesvvavkGkvkekekapqgleiipeklevlneakeplPldleek 108
+ v++ g++ r+ G+ +fv + d+++ iq v+ + ++++ f+ +++++ +++ vkG++ + ++ ++l i +++ l++a +plP + +
MMSYN1_0064 60 QELVVVAGRIKLYREAGKkAAFVNIDDQDSSIQLYVRLDEIGDQSFEDFRNFDLGDIIGVKGIMMRTDH--GELSIRCKEVVLLSKALRPLPDKHAGI 155
466999***********999*******************************************998765..799******************776654 PP
TIGR00458 109 veaeldtrldarfldlr.rpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeity..fereaflaqsPqlykqvllaaglervy 203
+++ + r++dl + v+ f+ r+++++++++fl ++g++ev+tP l + ++ f y ++ + +l + l+ + l++ g+e vy
MMSYN1_0064 156 --QDIEEKYRRRYVDLImNHDVRKTFQARTKIIRTLQNFLDNKGYMEVETPILHSLKGGASAKPFITHYnvLNTDVYLRIATELHLKRLIVGGFEGVY 251
..567788889****96256799****************************776554333344454444335789*********************** PP
TIGR00458 204 eiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvaeklkkelevlevklevpeeklerltydeai..........eilrakG 291
ei+ ifr e t rh e++si++ +a+ed +d+ ee++ v+ e++ +++l +p ++rl ++i e+ ++
MMSYN1_0064 252 EIGRIFRNEGMST-RHNPEFTSIELYVAYEDMFFLMDLTEEIFRVCNAAVNSSSIIEYNNVKIDLSKP---FKRLHMVDGIkqvtgvdfwqEMTVQQA 345
*******998865.9****************************9999999988877777777777665...555555444411111111113333344 PP
TIGR00458 292 keikdgedlstea.ekllG............ekmdglyfitdfPteikPfytmPdednPeisksfdllyrdleissG....aqrihdydllvekikak 372
e+++ + e + +G ++ f+ +P ei P+ + ++P++++ f+l+ + e + i +y+ ++ +i ++
MMSYN1_0064 346 LELAKKHKVHVEKhQESVGhiinlfyeefveSTIVEPTFVYGHPKEISPLAKSNP-SDPRFTDRFELFILGREYANAfselNDPIDQYERFKAQIEEE 442
444443333333212344566666665333233344569999*******987766.89***********99997665111145688898888888765 PP
TIGR00458 373 GlePe....slksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPrdr 423
+ +++ea+++ mPP aG G+G++rlvm l++ + i+++ lfP+ +
MMSYN1_0064 443 SKGNDeandMDIDFIEALEHAMPPTAGIGIGIDRLVMLLTNSESIKDVLLFPQMK 497
44333223233479**************************************865 PP
>> TIGR00459 aspS_bact: aspartate--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.9 0.5 2.5e-29 1.4e-26 17 276 .. 61 326 .. 48 368 .. 0.82
2 ! 38.7 0.0 1.6e-13 9.2e-11 517 556 .. 456 495 .. 436 498 .. 0.90
Alignments for each domain:
== domain 1 score: 90.9 bits; conditional E-value: 2.5e-29
TIGR00459 17 kkvtlaGWverrkdlGe.liFidlrDkegivqvvsdkk...kealelakelrnedvvqvkgkvslreeesknrnldtgeievlaeeitvlnkskkk.P 109
+ v++aG ++ +++ G+ F+ + D++ +q+ + + ++++e +++ d++ vkg++ +r d ge+ + +e+ +l+k+ ++ P
MMSYN1_0064 61 ELVVVAGRIKLYREAGKkAAFVNIDDQDSSIQLYVRLDeigDQSFEDFRNFDLGDIIGVKGIM-MR--------TDHGELSIRCKEVVLLSKALRPlP 149
45899***********989**************998885555666777777778899999988.22........57899***********97755315 PP
TIGR00459 110 leiekkeaeeevrlkyRYLdL.RrpkmqqrlklRskvtkavRnflddkgFleietPiLtka.tPeGardyLvPsRvkkgefyaLpqsPqlfkqLLmvs 205
+ + +ee + + RY+dL + + ++++ R+k+++++ nfld+kg++e+etPiL a+ ++ v + y L + l+ + L+v+
MMSYN1_0064 150 DKHAGIQDIEE-KYRRRYVDLiMNHDVRKTFQARTKIIRTLQNFLDNKGYMEVETPILHSLkGGASAKPFITHYNVLNTDVY-LRIATELHLKRLIVG 245
44444444444.46678***93477899******************************76414567899********99999.7788889888999** PP
TIGR00459 206 GvdkYyqiarcfRDeDlRaDRqPeftqiDlemsFlnqedvmelveklvsevfkevkk..........idlkkkfpvltyee 276
G++ y i r+fR+e + Peft i+l +++ + +m+l+e++++ +v idl+k+f++l+ +
MMSYN1_0064 246 GFEGVYEIGRIFRNEGMSTRHNPEFTSIELYVAYEDMFFLMDLTEEIFRVCNAAVNSssiieynnvkIDLSKPFKRLHMVD 326
**********************************************99877766665667777777788888888876555 PP
== domain 2 score: 38.7 bits; conditional E-value: 1.6e-13
TIGR00459 517 lleafeyGaPphaGlalGlDRlvmllaetdsiRdviaFPk 556
++ea+e Pp aG+++G+DRlvmll++++si+dv+ FP+
MMSYN1_0064 456 FIEALEHAMPPTAGIGIGIDRLVMLLTNSESIKDVLLFPQ 495
589************************************7 PP
>> TIGR00457 asnS: asparagine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 93.4 0.7 5.7e-30 3.2e-27 15 450 .. 59 497 .. 48 500 .] 0.77
Alignments for each domain:
== domain 1 score: 93.4 bits; conditional E-value: 5.7e-30
TIGR00457 15 vdeevkvsgWvktkR.sskkiaFlelrDGsslkalqavikke.leeeleqelkklttgssvsvsgkvvespkkkqelElkvkkievvgeaeeedyplq 110
++e v v g +k R + kk aF+++ D + +q ++ + + ++++++ ++ ++g + v+g ++++++ el ++ k++ ++++a p +
MMSYN1_0064 59 NQELVVVAGRIKLYReAGKKAAFVNIDDQD--SSIQLYVRLDeIGDQSFEDFRNFDLGDIIGVKGIMMRTDH--GELSIRCKEVVLLSKAL-RPLPDK 151
5677999********78899********99..5666666554367888*******************99875..56778888888888887.333333 PP
TIGR00457 111 kke...hsleflrelahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvktegvdfskdffgkeayLtvsgqlelEa 205
++ + ++ r L + + + + R++++++++++ +++g+++v+tPil s + +++ F ++ + + + yL +++ l+l
MMSYN1_0064 152 HAGiqdIEEKYRRRYVDLIMNHD-VRKTFQARTKIIRTLQNFLDNKGYMEVETPILHSLKGGASAKPFITH-------YNVLNTDVYLRIATELHLKR 241
33220033456666666666555.4556899*************************999987777888777.......46899************987 PP
TIGR00457 206 lal.alskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavleeakqelkf....leknvekkki.kkleeiiss.kfa 296
l++ ++ vy +g FR E t RH Ef+ iE +a+ ++ l++l+ee+ + av + e ++ l+k +++ ++ ++++ ++
MMSYN1_0064 242 LIVgGFEGVYEIGRIFRNEGMST-RHNPEFTSIELYVAYEDMFFLMDLTEEIFRVCNAAVNSSSIIEYNNvkidLSKPFKRLHMvDGIKQVTGVdFWQ 338
66527*************98765.9**************************99988888877766665550111445555544414456666663468 PP
TIGR00457 297 ritYtdAieiLkesdakkkfeledlwGvdlktehErflaeeyfksPvfvtdyPkeikaFYmkqnddektvaavDllvPkiGEiiGGse...Reddldk 391
++t ++A+e+ k+++ + + + +++ G+ ++ E f+ e + +P+fv +Pkei + + d++ + ++l++ + se +d++++
MMSYN1_0064 339 EMTVQQALELAKKHKVHVE-KHQESVGHIINLFYEEFV-ESTIVEPTFVYGHPKEISPLAKSNPSDPRFTDRFELFILGREYANAFSElndPIDQYER 434
9************954444.556669******999987.6666788************865555**********988765444445551115778888 PP
TIGR00457 392 Leerlkeegldteelk....WyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpRta 450
+++++ee ++e + +++ + p +G G+G++Rlv lt+ e i+d+ +fp ++
MMSYN1_0064 435 FKAQIEEESKGNDEANdmdiDFIEALEHAMPPTAGIGIGIDRLVMLLTNSESIKDVLLFPQMK 497
8899988765444332111258999999********************************875 PP
>> TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.4 0.2 0.00012 0.068 27 132 .. 181 275 .. 156 314 .. 0.66
2 ? 3.2 0.0 0.019 11 204 227 .. 466 489 .. 455 491 .. 0.87
Alignments for each domain:
== domain 1 score: 10.4 bits; conditional E-value: 0.00012
TIGR02367 27 allklerelakalvdrGfvevkspiliske..llekmtideddelfkqvfrvdekkclrpmlapnlynllrkldrllekpi.rifeiGscyrkesdGs 121
a +k+ r l ++l ++G++ev++pil s++ + +k i++ + l+ v+ lr +a l+ l+rl+ ++eiG +r e +
MMSYN1_0064 181 ARTKIIRTLQNFLDNKGYMEVETPILHSLKggASAKPFITHYNVLNTDVY-------LR--IATELH-----LKRLIVGGFeGVYEIGRIFRNEGMST 264
45678889999999999999999999887622455556666666666554.......33..333332.....33333322214677888888888888 PP
TIGR02367 122 ehleeftmlnl 132
+h eft ++l
MMSYN1_0064 265 RHNPEFTSIEL 275
88888877765 PP
== domain 2 score: 3.2 bits; conditional E-value: 0.019
TIGR02367 204 pwvGlGfGlerllkvredtknvrs 227
p G+G G++rl+++ + + ++
MMSYN1_0064 466 PTAGIGIGIDRLVMLLTNSESIKD 489
889************999999885 PP
>> TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.7 0.0 2.2 1.3e+03 71 97 .. 179 205 .. 156 208 .. 0.63
2 ! 11.6 0.0 4.9e-05 0.027 185 217 .. 252 284 .. 246 302 .. 0.82
3 ! 5.2 0.0 0.0043 2.4 288 310 .. 467 489 .. 459 493 .. 0.82
Alignments for each domain:
== domain 1 score: -3.7 bits; conditional E-value: 2.2
TIGR00468 71 lhpltkvieeikeiflelgftvekgpe 97
++ tk+i+ +++++ + g+ +++ p+
MMSYN1_0064 179 FQARTKIIRTLQNFLDNKGYMEVETPI 205
445567777777777777777777665 PP
== domain 2 score: 11.6 bits; conditional E-value: 4.9e-05
TIGR00468 185 sigrvfRrdavdatHlpeFhQveglvvdknvsl 217
igr+fR++ + +H peF+ +e+ v+ +++ +
MMSYN1_0064 252 EIGRIFRNEGMSTRHNPEFTSIELYVAYEDMFF 284
589********************9988776544 PP
== domain 3 score: 5.2 bits; conditional E-value: 0.0043
TIGR00468 288 vlafGlgieRlamlkygikdiRd 310
++G+gi+Rl+ml + + i+d
MMSYN1_0064 467 TAGIGIGIDRLVMLLTNSESIKD 489
5689**********998777776 PP
>> TIGR00442 hisS: histidine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 4.5 0.0 0.0062 3.5 13 43 .. 178 208 .. 171 211 .. 0.87
2 ! 8.1 0.0 0.00049 0.27 288 319 .. 457 488 .. 455 496 .. 0.84
Alignments for each domain:
== domain 1 score: 4.5 bits; conditional E-value: 0.0062
TIGR00442 13 eaekrqkveetirevfesygfeeietPilEk 43
++r k+++t+++ +++ g+ e+etPil +
MMSYN1_0064 178 TFQARTKIIRTLQNFLDNKGYMEVETPILHS 208
567899**********************976 PP
== domain 2 score: 8.1 bits; conditional E-value: 0.00049
TIGR00442 288 veelggekvpavGfaiGieRllllleeeglle 319
+e l++ p+ G++iGi+Rl++ll +++ ++
MMSYN1_0064 457 IEALEHAMPPTAGIGIGIDRLVMLLTNSESIK 488
67778888899**************8887765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (500 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 197 (0.0438948); expected 89.8 (0.02)
Passed bias filter: 131 (0.0291889); expected 89.8 (0.02)
Passed Vit filter: 17 (0.00378788); expected 4.5 (0.001)
Passed Fwd filter: 8 (0.00178253); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.23
# Mc/sec: 3121.83
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0064 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0065 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0065.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0065/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0065 [L=102]
Description: trxA 5=Equivalog Redox homeostasis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.5e-32 107.9 0.1 6.2e-32 107.8 0.1 1.0 1 TIGR01068 thioredoxin: thioredoxin
2.7e-16 57.7 0.0 3.1e-16 57.6 0.0 1.0 1 TIGR01126 pdi_dom: protein disulfide-isomerase domain
2.6e-14 51.6 0.0 2.8e-14 51.5 0.0 1.0 1 TIGR01130 ER_PDI_fam: protein disulfide isomerase
2.1e-06 25.4 0.0 3.1e-06 24.8 0.0 1.3 1 TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidored
3e-05 22.0 0.0 4.3e-05 21.5 0.0 1.3 1 TIGR00411 redox_disulf_1: redox-active disulfide protein 1
0.00029 19.3 0.0 0.00049 18.5 0.0 1.5 1 TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
0.0005 17.8 0.0 0.00052 17.8 0.0 1.0 1 TIGR02187 GlrX_arch: glutaredoxin-like domain protein
0.00069 16.9 0.0 0.012 12.8 0.0 2.0 1 TIGR02740 TraF-like: TraF-like protein
0.001 17.3 0.0 0.0092 14.2 0.0 1.9 1 TIGR01295 PedC_BrcD: putative bacteriocin transport accessor
------ inclusion threshold ------
0.025 13.0 0.0 0.039 12.4 0.0 1.4 1 TIGR02200 GlrX_actino: glutaredoxin-like protein
0.026 11.1 0.0 0.028 10.9 0.0 1.0 1 TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredox
0.033 12.3 0.0 0.04 12.0 0.0 1.3 1 TIGR02654 circ_KaiB: circadian clock protein KaiB
Domain annotation for each model (and alignments):
>> TIGR01068 thioredoxin: thioredoxin
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 107.8 0.1 1.7e-34 6.2e-32 2 97 .. 9 101 .. 8 102 .] 0.95
Alignments for each domain:
== domain 1 score: 107.8 bits; conditional E-value: 1.7e-34
TIGR01068 2 seenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeli 97
s+e+f+++++++ +vlvDf A+WCgpCkmlaP+l+++ak++ vk++ ++vd ++++a+++ i+siPtl+ f+ng++v++ +G+ + ++lk+li
MMSYN1_0065 9 SKEQFDKEIKEG--KVLVDFNATWCGPCKMLAPILHDFAKKVG-GVKFLDVDVDLNRQVAEEFRIMSIPTLITFENGNQVNKHIGFATPDQLKKLI 101
6899*******8..5************************8777.6************************************************998 PP
>> TIGR01126 pdi_dom: protein disulfide-isomerase domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 57.6 0.0 8.2e-19 3.1e-16 3 96 .. 10 96 .. 8 102 .] 0.86
Alignments for each domain:
== domain 1 score: 57.6 bits; conditional E-value: 8.2e-19
TIGR01126 3 aenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaee 96
+e+fd+ ++ + +vlv+f a WCG Ck laP ++ ak++ vk +vd + ++++a++f + + Ptl f++g++ +++ G + ++
MMSYN1_0065 10 KEQFDKEIK--EGKVLVDFNATWCGPCKMLAPILHDFAKKVGG----VKFLDVDVDLNRQVAEEFRIMSIPTLITFENGNQ-VNKHIGFATPDQ 96
789999999..689************************99985....99******************************97.555555555555 PP
>> TIGR01130 ER_PDI_fam: protein disulfide isomerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.5 0.0 7.5e-17 2.8e-14 3 93 .. 4 90 .. 2 101 .. 0.86
Alignments for each domain:
== domain 1 score: 51.5 bits; conditional E-value: 7.5e-17
TIGR01130 3 vlelt.kenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnG 93
++++t ke+fd+ ike + vLv F A WCG Ck LaP + A+++ vk vD ++++a+++++ PtL f ng+++++ G
MMSYN1_0065 4 IIKITsKEQFDKEIKEGK-VLVDFNATWCGPCKMLAPILHDFAKKVG----GVKFLDVDVDLNRQVAEEFRIMSIPTLITFENGNQVNKHIG 90
555552689*****9876.89******************99998774....499*******************************9888766 PP
>> TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.8 0.0 8.3e-09 3.1e-06 59 106 .. 15 64 .. 2 73 .. 0.75
Alignments for each domain:
== domain 1 score: 24.8 bits; conditional E-value: 8.3e-09
TIGR00385 59 vlkkgklvLlnvwasWCptCraehplLkelake..glrivgvdykDesqk 106
+k vL+++ a+WC++C+ p+L+++ak+ g++ + vd ++q
MMSYN1_0065 15 KEIKEGKVLVDFNATWCGPCKMLAPILHDFAKKvgGVKFLDVDVDLNRQV 64
33455779***********************9843477777776666665 PP
>> TIGR00411 redox_disulf_1: redox-active disulfide protein 1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.5 0.0 1.2e-07 4.3e-05 6 78 .. 26 101 .. 21 102 .] 0.85
Alignments for each domain:
== domain 1 score: 21.5 bits; conditional E-value: 1.2e-07
TIGR00411 6 ftsPtCPyCPkakkvveevakeegdkvevekinvmedlkkaleyGimavPaivi....ngkvefvGaPdkeeLveai 78
f + C C + + ++ ak +g v+ + ++v+ +++ a e+ im++P+++ n++ + +G + ++L ++i
MMSYN1_0065 26 FNATWCGPCKMLAPILHDFAKKVGG-VKFLDVDVDLNRQVAEEFRIMSIPTLITfengNQVNKHIGFATPDQLKKLI 101
6667799999999999999999985.899***********************9655446677889998888888877 PP
>> TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.5 0.0 1.3e-06 0.00049 7 73 .. 28 101 .. 21 102 .] 0.72
Alignments for each domain:
== domain 1 score: 18.5 bits; conditional E-value: 1.3e-06
TIGR02196 7 tpwCppCkkakeyLks.....kgiafeeidvekdsaaaeellkklgqrsvPviv.......igekivvGFd.kekldkll 73
+wC+pCk + L+ g++f ++dv+ + + aee +s+P+++ ++++ +GF +++l kl+
MMSYN1_0065 28 ATWCGPCKMLAPILHDfakkvGGVKFLDVDVDLNRQVAEE----FRIMSIPTLItfengnqVNKH--IGFAtPDQLKKLI 101
68******998887532222259***********998888....7899***99966554433333..5884367777776 PP
>> TIGR02187 GlrX_arch: glutaredoxin-like domain protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.8 0.0 1.4e-06 0.00052 10 89 .. 10 84 .. 2 102 .] 0.63
Alignments for each domain:
== domain 1 score: 17.8 bits; conditional E-value: 1.4e-06
TIGR02187 10 keeflkelknpvelvvFtdeskekCeyCeetkqlleelsevsdklkleiydldteedkekvekykvervPtvileeegsk 89
ke+f ke+k+ lv F + C C+ + +l+ +++ +k d+d + +++++e++++ +Pt+i e+g++
MMSYN1_0065 10 KEQFDKEIKEGKVLVDFNA---TWCGPCKMLAPILHDFAKKVGGVK--FLDVDVDLNRQVAEEFRIMSIPTLITFENGNQ 84
6777777776654444444...567777777777776666555444..45555556788888888888888887777733 PP
>> TIGR02740 TraF-like: TraF-like protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.8 0.0 3.3e-05 0.012 160 254 .. 10 92 .. 5 101 .. 0.72
Alignments for each domain:
== domain 1 score: 12.8 bits; conditional E-value: 3.3e-05
TIGR02740 160 kdevlkelakkaglffffksdCklCeqqapilkaleeryg.ievlpvSvDGkplpggkfpnvrvdagiaekLkirtvPavvlvdpkpkqi.kpisfG 254
k++ ke+ + ++l f + C C+ apil+ ++++ g ++ l v vD + ++ae+++i +P+++ +++ ++q+ k i+f
MMSYN1_0065 10 KEQFDKEIKEGKVLVDFNATWCGPCKMLAPILHDFAKKVGgVKFLDVDVD-------------LNRQVAEEFRIMSIPTLITFEN-GNQVnKHIGFA 92
666677887777777776666*************9998752777777666.............4557888888888888888888.55541566665 PP
>> TIGR01295 PedC_BrcD: putative bacteriocin transport accessory protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.2 0.0 2.5e-05 0.0092 7 111 .. 3 93 .. 1 102 [] 0.77
Alignments for each domain:
== domain 1 score: 14.2 bits; conditional E-value: 2.5e-05
TIGR01295 7 gvkaitvkellekldkdetfilfiGfkeCpyCRkfsrtlssylaqskapiYyvdleingsfelssekeltefkstfakpisalgtPtfvriedgkvvs 104
+++ it ke +k k+ ++++ C C+ +++l ++ ++ + ++d++ ++l + +ef+ ++ +Pt++ e+g++v+
MMSYN1_0065 3 DIIKITSKEQFDKEIKEGKVLVDFNATWCGPCKMLAPILHDFAKK-VGGVKFLDVD----VDLNRQ-VAEEFR--------IMSIPTLITFENGNQVN 86
788999999999999999999988999999999999999999765.5678999999....444444.222343........4789************* PP
TIGR01295 105 vtigdst 111
ig t
MMSYN1_0065 87 KHIGFAT 93
*999765 PP
>> TIGR02200 GlrX_actino: glutaredoxin-like protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.4 0.0 0.0001 0.039 5 43 .. 26 69 .. 22 88 .. 0.72
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 0.0001
TIGR02200 5 YatswCgyCaslkrtL.....dkdgaeYevvdiekdeeaadyvk 43
+ ++wCg C++l L + g+++ vd++ + + a+ +
MMSYN1_0065 26 FNATWCGPCKMLAPILhdfakKVGGVKFLDVDVDLNRQVAEEFR 69
5789********99885333223578888899988888777555 PP
>> TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.9 0.0 7.6e-05 0.028 370 438 .. 17 81 .. 6 96 .. 0.79
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 7.6e-05
TIGR00424 370 erkeawlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillfpk 438
++ lv + a wc c+ + ++a+k+ g vk + d d + +e+++ s+pt++ f +
MMSYN1_0065 17 IKEGKVLVDFNATWCGPCKMLAPILHDFAKKVGG--VKF--LDVDVDLNRQVAEEFRIMSIPTLITFEN 81
44455677889*******************9975..555..4567777777889**********99965 PP
>> TIGR02654 circ_KaiB: circadian clock protein KaiB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.0 0.0 0.00011 0.04 23 64 .. 36 79 .. 21 101 .. 0.73
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 0.00011
TIGR02654 23 tlkniletefkgvyalkvi..dvlknpqlaeedkilatptlski 64
l il + k v +k + dv n q+aee +i++ ptl
MMSYN1_0065 36 MLAPILHDFAKKVGGVKFLdvDVDLNRQVAEEFRIMSIPTLITF 79
566666666666666666511567899*************9765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (102 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 149 (0.0331996); expected 89.8 (0.02)
Passed bias filter: 125 (0.027852); expected 89.8 (0.02)
Passed Vit filter: 21 (0.00467914); expected 4.5 (0.001)
Passed Fwd filter: 12 (0.0026738); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 12 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 770.93
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0065 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0066 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0066.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0066/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0066 [L=280]
Description: Cof-like hydrolase 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-43 147.0 3.3 2e-43 146.8 3.3 1.0 1 TIGR00099 Cof-subfamily: Cof-like hydrolase
2.1e-21 74.9 0.4 2.7e-11 41.9 0.1 2.1 2 TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
1.3e-18 65.7 2.4 2.1e-09 35.5 0.1 2.1 2 TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0
3.3e-17 60.6 0.1 5e-16 56.7 0.1 2.0 1 TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosp
5.5e-16 56.8 1.0 2.9e-07 28.3 0.2 2.1 2 TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfa
1.8e-15 55.6 1.1 6.8e-09 34.1 0.2 2.1 2 TIGR02461 osmo_MPG_phos: mannosyl-3-phosphoglycerate phospha
2e-12 45.4 0.0 1.7e-07 29.2 0.0 2.1 2 TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase
0.0008 17.7 2.0 0.016 13.4 0.2 2.7 2 TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB
0.0036 15.3 3.3 0.1 10.5 0.1 2.6 2 TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydr
0.0078 14.3 0.2 0.045 11.8 0.1 2.2 3 TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
Domain annotation for each model (and alignments):
>> TIGR00099 Cof-subfamily: Cof-like hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 146.8 3.3 4.5e-46 2e-43 1 256 [] 7 272 .. 7 272 .. 0.87
Alignments for each domain:
== domain 1 score: 146.8 bits; conditional E-value: 4.5e-46
TIGR00099 1 lifiDlDGTLlskdkeispetkealaklrekGikvvlaTGRsykevkeilkelgld...plivanGaavvdengk.eilykkpldldlveeilnilkk 94
+if+DlDGTLl +d sp+t+e+++kl +kGi +v T+R k++k+ + l++d +iva ++a +++ ++ +i+++k+l++++++e++n ++
MMSYN1_0066 7 IIFSDLDGTLLYDDYIFSPKTIEVVEKLYKKGIYLVPITARTIKDLKQKASLLQIDkfkGIIVASNGAQIYDYKTdKIIFDKTLPKEFIKEMFNRYHN 104
69**********************************************9999999999977777666666666555******************9999 PP
TIGR00099 95 lg.ldvilysddsiyfsknkneifeiekkklaepkkevvknqlledddlkillllleaedldkleealkk...eeleeelsvvsssedsieitakgvs 188
+ +++i+ys + y+ + +++ + + + +++ v+ d+ ++ +++++ ++ ++ + k +++ + ++v s+++ +++i kgv+
MMSYN1_0066 105 KFfAKMIFYSPNCCYVFAEGKNSKYWAHQVMGLKYISVDSP-DQIDEPITHFYIVTNSKATPEENLNEYKylmNNYADSYKVDSYNNRVFDISVKGVD 201
998**********9999998888877777777777666665.666677776666666555544443333345689*********************** PP
TIGR00099 189 Kgsalqslaeklgislenvia..iGDseNDieMleaagvgvamgnaneelkaladyvtds.ndedgvakal 256
Kg ++ +++++l+++ + + + +GD+ ND ++l+a+ +g+am+n+ elk++ad +td nd+dgva ++
MMSYN1_0066 202 KGCGVAEVMKYLNLDEKTTHSygFGDGPNDFSLLKACTTGIAMKNGIIELKEIADDITDYsNDKDGVARYI 272
***************999854449***********************************99*******997 PP
>> TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.9 0.1 6.1e-14 2.7e-11 1 87 [. 7 89 .. 7 112 .. 0.77
2 ! 31.5 0.0 8.8e-11 4e-08 157 221 .] 178 244 .. 150 244 .. 0.86
Alignments for each domain:
== domain 1 score: 41.9 bits; conditional E-value: 6.1e-14
TIGR01484 1 llffDlDgTLldpklelseelieaLerlrealgvkvvivTGRslaeikellkqlnlelpliaengalieaqgeklyaea.lpedvaev 87
++f+DlDgTLl +++ s+++ie +e+l ++ g+ +v++T R+++ +k ++ l + + g ++ ++g ++y ++ ++ ++++
MMSYN1_0066 7 IIFSDLDGTLLYDDYIFSPKTIEVVEKLYKK-GIYLVPITARTIKDLKQKASL----LQIDKFKGIIVASNGAQIYDYKtDKIIFDKT 89
69*****************************.9*******************4....5555666666777777777765333333333 PP
== domain 2 score: 31.5 bits; conditional E-value: 8.8e-11
TIGR01484 157 ilsrsnalqkegetllevlpagvdKgkalqalleelnlkkeeil..afGDsgNDeemlevaglavav 221
++++s+++++ +++++++ +gvdKg +++ ++++lnl+ ++++ +fGD+ ND ++l+++ +++a+
MMSYN1_0066 178 NYADSYKVDSYNNRVFDISVKGVDKGCGVAEVMKYLNLDEKTTHsyGFGDGPNDFSLLKACTTGIAM 244
455566888999*************************99999874479**************99998 PP
>> TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0175-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.5 0.1 4.6e-12 2.1e-09 2 117 .. 6 126 .. 5 142 .. 0.77
2 ! 30.2 0.3 1.9e-10 8.6e-08 140 209 .. 194 265 .. 172 271 .. 0.86
Alignments for each domain:
== domain 1 score: 35.5 bits; conditional E-value: 4.6e-12
TIGR01487 2 klvavDiDgTltdknrlislraieairklekkGikvvlvtGnevkfvealavligvs...gavvaEnGgvvlykk.edielankekeslldevkkkie 95
+++ +D+DgTl +++ + s++ ie + kl kkGi +v +t +++k +++ a l++++ g +va nG+ + + k +i + ++ + +++e+ + +
MMSYN1_0066 6 IIIFSDLDGTLLYDDYIFSPKTIEVVEKLYKKGIYLVPITARTIKDLKQKASLLQIDkfkGIIVASNGAQIYDYKtDKIIFDKTLPKEFIKEMFNRYH 103
57999******************************************9999999875444899******99877736666666666666666655444 PP
TIGR01487 96 lrdllk.neysraslvvdregkd 117
+ k ys ++ +v+ egk+
MMSYN1_0066 104 NKFFAKmIFYSPNCCYVFAEGKN 126
33333303355677777777665 PP
== domain 2 score: 30.2 bits; conditional E-value: 1.9e-10
TIGR01487 140 hilkkgvdKgvgvkklkellGlkkeevaa..iGDsenDldlFrvagfkvavanAddelKeiaDlvtenesGe 209
i kgvdKg gv +++ l l+++ GD+ nD+ l + ++a+ n + elKeiaD +t++++ +
MMSYN1_0066 194 DISVKGVDKGCGVAEVMKYLNLDEKTTHSygFGDGPNDFSLLKACTTGIAMKNGIIELKEIADDITDYSNDK 265
57789*****************88655432389**********************************98755 PP
>> TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.7 0.1 1.1e-18 5e-16 1 221 [. 7 245 .. 7 265 .. 0.80
Alignments for each domain:
== domain 1 score: 56.7 bits; conditional E-value: 1.1e-18
TIGR01486 1 liftDlDgtLldehsYdlgp.AkevlerlqelgipvilctSKtaaEveelrkelgle...dpfivEnGaaiylprgsra......eeeveeialGksy 88
+if+DlDgtLl Y ++p ev+e+l + gi +++ t++t++ +++ l+++ + ++ nGa iy ++ + +e+ ++ + +
MMSYN1_0066 7 IIFSDLDGTLLY-DDYIFSPkTIEVVEKLYKKGIYLVPITARTIKDLKQKASLLQIDkfkGIIVASNGAQIYDYKTDKIifdktlPKEFIKEMFNRYH 103
7**********9.88999983569*************************9999***988789999*******88877777877764446999999999 PP
TIGR01486 89 ekiraeLeeleeelglklkglgdltaeeiaeltGLs......reaaalaqereysetlle.dseekeerleealaelglev...vkgarfyhvlgaes 176
+k a++ + ++ + + + g+ ++ ++++ GL+ + +++ ++ y +t + ee+ ++ + ++++ ++ +r+ + +++
MMSYN1_0066 104 NKFFAKMIFYSPNCCYVF-AEGKNSKYWAHQVMGLKyisvdsPDQIDEPITHFYIVTNSKaTPEENLNEYKYLMNNYADSYkvdSYNNRVFDISVKGV 200
******************.889999999*******722222245555566666666666655555556655555554433311124688888888*** PP
TIGR01486 177 dKGkAvnalkqlykekekaikvvglGDspnDlpllevvdlavvvk 221
dKG v+++ ++++ ek ++g GD+pnD++ll++ + k
MMSYN1_0066 201 DKGCGVAEVMKYLNLDEKTTHSYGFGDGPNDFSLLKACTTGIAMK 245
************************************998887776 PP
>> TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.3 0.0 1.2e-09 5.4e-07 1 86 [. 8 96 .. 8 114 .. 0.82
2 ! 28.3 0.2 6.4e-10 2.9e-07 141 212 .. 193 267 .. 165 278 .. 0.81
Alignments for each domain:
== domain 1 score: 27.3 bits; conditional E-value: 1.2e-09
TIGR01482 1 iasDlDgTlvdeeralnlsaleairkaesvyillvlvtGrsvkfakelaklig...tpdivilenGgeilyneglddkflenleekwer 86
i sDlDgTl +++ ++ + +e+ +k +++i lv +t r++k k+ a l++ +i++++nG+ i++ + + +f + l ++ ++
MMSYN1_0066 8 IFSDLDGTLLYDDYIFSPKTIEVVEKLYKKGIYLVPITARTIKDLKQKASLLQidkFKGIIVASNGAQIYDYKTDKIIFDKTLPKEFIK 96
789**************************************99888777766655789***********99994444444455555444 PP
== domain 2 score: 28.3 bits; conditional E-value: 6.4e-10
TIGR01482 141 ldilpkgvdKGkavkylkeklgikpeeilv..iGDSeNDidlFevavfkvavanAqeelkewadlvt.eskygeg 212
+di kgvdKG +v+ + l + + + GD+ ND l + ++a+ n + elke+ad +t s++ g
MMSYN1_0066 193 FDISVKGVDKGCGVAEVMKYLNLDEKTTHSygFGDGPNDFSLLKACTTGIAMKNGIIELKEIADDITdYSNDKDG 267
68899******************94444333389*********************************42334444 PP
>> TIGR02461 osmo_MPG_phos: mannosyl-3-phosphoglycerate phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.1 0.2 1.5e-11 6.8e-09 1 68 [. 7 78 .. 7 92 .. 0.88
2 ! 20.4 0.0 2.3e-07 0.0001 175 223 .. 193 241 .. 173 245 .. 0.88
Alignments for each domain:
== domain 1 score: 34.1 bits; conditional E-value: 1.5e-11
TIGR02461 1 viftDlDgTLldetyeagp.ArevleelkdkglevvfvssKtraEqeeyreelgvkdp...fivEnGgaiyi 68
+if DlDgTLl y +p +ev+e+l +kg+ +v+++++t+++ ++ l++ + +++ nG+ iy
MMSYN1_0066 7 IIFSDLDGTLLYDDYIFSPkTIEVVEKLYKKGIYLVPITARTIKDLKQKASLLQIDKFkgiIVASNGAQIYD 78
7***********9999887368************************99999999986555577899**9*95 PP
== domain 2 score: 20.4 bits; conditional E-value: 2.3e-07
TIGR02461 175 fyevvggsdKGkAikvllelyklrlgaivtvglGDsenDlplleavdla 223
f v+g dKG ++ +++ +l+++ +++g GD+ nD++ll+a +
MMSYN1_0066 193 FDISVKGVDKGCGVAEVMKYLNLDEKTTHSYGFGDGPNDFSLLKACTTG 241
5556789************************************998765 PP
>> TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.2 0.0 3.8e-10 1.7e-07 1 70 [. 7 80 .. 7 106 .. 0.85
2 ! 14.3 0.0 1.3e-05 0.0061 163 211 .. 190 240 .. 166 245 .. 0.83
Alignments for each domain:
== domain 1 score: 29.2 bits; conditional E-value: 3.8e-10
TIGR02463 1 lvvsDlDGtLldhsydwqpAa.etlkrLqeagvPvilctsktaaEvealrkelglq..dPyi.vEnGaviqlee 70
+++sDlDGtLl + y ++p + e++++L ++g+ +++ t++t +++++ l+++ + i + nGa i+ +
MMSYN1_0066 7 IIFSDLDGTLLYDDYIFSPKTiEVVEKLYKKGIYLVPITARTIKDLKQKASLLQIDkfKGIIvASNGAQIYDYK 80
69****************964399************************999999997545541689*9998654 PP
== domain 2 score: 14.3 bits; conditional E-value: 1.3e-05
TIGR02463 163 nRlsHllgaeaskgkavnalkkalnek..dvkvlgLGDspnDlpLLevaDl 211
nR++ + + ++kg v+++ k+ln + g GD+pnD +LL+
MMSYN1_0066 190 NRVFDISVKGVDKGCGVAEVMKYLNLDekTTHSYGFGDGPNDFSLLKACTT 240
677777778899*******999987553377889************98655 PP
>> TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.8 0.0 0.063 28 87 140 .. 22 73 .. 17 114 .. 0.80
2 ! 13.4 0.2 3.5e-05 0.016 140 192 .. 186 240 .. 170 246 .. 0.81
Alignments for each domain:
== domain 1 score: 2.8 bits; conditional E-value: 0.063
TIGR01490 87 llypeardlikahkaeGhkvvlvSasleilvkplArklgidnligtrleeaedG 140
++ p+++++++++ ++G +v ++a +k+ A l id+ g+ +++ +G
MMSYN1_0066 22 IFSPKTIEVVEKLYKKGIYLVPITARTIKDLKQKASLLQIDKFKGIIVAS--NG 73
5678999*****************************99999999985554..43 PP
== domain 2 score: 13.4 bits; conditional E-value: 3.5e-05
TIGR01490 140 GiltGelegenlkgeeKvkalaellaeekid..lkesyaYsDsisDlpllslvgh 192
+ + ++ +kg K +ae+++ ++d ++sy ++D +D ll+++++
MMSYN1_0066 186 DSYNNRVFDISVKGVDKGCGVAEVMKYLNLDekTTHSYGFGDGPNDFSLLKACTT 240
556667777778888888888888888888766799****************987 PP
>> TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.9 0.7 0.012 5.3 2 17 .. 8 23 .. 7 105 .. 0.81
2 ! 10.5 0.1 0.00023 0.1 114 176 .. 177 237 .. 153 238 .. 0.75
Alignments for each domain:
== domain 1 score: 4.9 bits; conditional E-value: 0.012
TIGR01488 2 aifDfDgTLtdqdsli 17
+++D+DgTL + d ++
MMSYN1_0066 8 IFSDLDGTLLYDDYIF 23
899******9999854 PP
== domain 2 score: 10.5 bits; conditional E-value: 0.00023
TIGR01488 114 kvfanelelddnGlltgriegevnpsgeeKgkvlkelleeske..drkeiiavGDsvnDlpllkl 176
+++a +++d ++ ++ + +++g +Kg+ ++e+ ++ ++ + ++++ +GD+ nD++llk+
MMSYN1_0066 177 NNYADSYKVDSYNNRVF---D-ISVKGVDKGCGVAEVMKYLNLdeKTTHSYGFGDGPNDFSLLKA 237
46666777765555555...3.67899999999999999999876666888899*******9985 PP
>> TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.8 0.1 9.9e-05 0.045 2 57 .. 7 53 .. 6 71 .. 0.81
2 ? -0.7 0.0 0.72 3.2e+02 42 57 .. 65 80 .. 47 105 .. 0.75
3 ? -2.4 0.0 2.5 1.1e+03 45 69 .. 156 178 .. 153 188 .. 0.65
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 9.9e-05
TIGR01662 2 lvvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsgigrgk 57
+++ DlDgtL +d+ ++ p++i+ +++l+k+G+ +v +t ++ i+ k
MMSYN1_0066 7 IIFSDLDGTLL--------YDDYIFSPKTIEVVEKLYKKGIYLVPITART-IKDLK 53
6899*******........7778889******************999988.66655 PP
== domain 2 score: -0.7 bits; conditional E-value: 0.72
TIGR01662 42 ykvvivtNqsgigrgk 57
+ +++++N +i +k
MMSYN1_0066 65 KGIIVASNGAQIYDYK 80
5689999999998877 PP
== domain 3 score: -2.4 bits; conditional E-value: 2.5
TIGR01662 45 vivtNqsgigrgkesveevsekves 69
+ivtN++ ++ e+++e + +++
MMSYN1_0066 156 YIVTNSK--ATPEENLNEYKYLMNN 178
6999999..5555666665555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (280 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 194 (0.0432264); expected 89.8 (0.02)
Passed bias filter: 116 (0.0258467); expected 89.8 (0.02)
Passed Vit filter: 31 (0.00690731); expected 4.5 (0.001)
Passed Fwd filter: 10 (0.00222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 10 [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.21
# Mc/sec: 1914.72
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0066 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0076 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0076.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0076/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0076 [L=454]
Description: asnRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-177 589.3 7.8 1.3e-177 589.1 7.8 1.0 1 TIGR00457 asnS: asparagine--tRNA ligase
1e-58 197.3 4.3 1.4e-58 196.8 4.3 1.1 1 TIGR00458 aspS_nondisc: aspartate--tRNA(Asn) ligase
5.6e-34 115.4 3.0 3e-22 76.6 3.0 2.1 2 TIGR00459 aspS_bact: aspartate--tRNA ligase
1.1e-33 114.6 11.2 2.8e-33 113.2 11.2 1.6 1 TIGR00499 lysS_bact: lysine--tRNA ligase
3e-15 54.4 0.9 9.6e-15 52.8 0.9 1.9 1 TIGR00462 genX: EF-P lysine aminoacylase GenX
0.00047 17.4 0.2 0.17 9.1 0.0 2.6 2 TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
Domain annotation for each model (and alignments):
>> TIGR00457 asnS: asparagine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 589.1 7.8 1.8e-180 1.3e-177 3 454 .. 2 453 .. 1 454 [] 0.98
Alignments for each domain:
== domain 1 score: 589.1 bits; conditional E-value: 1.8e-180
TIGR00457 3 aikdlleqvkkavdeevkvsgWvktkRsskkiaFlelrDGsslkalqavikkeleeeleqelkklttgssvsvsgkvvespkkkqelElkvkkievvg 100
+i++++eq + d+ev++ g v+++R k ++F+ l+DG++++ lq+v k++++ + +++ + + s v v g vv +p+k+q++El++++ie++
MMSYN1_0076 2 EIRQIFEQHSELLDKEVEILGRVRSNRQGKFVSFMILNDGTTFTDLQVVYKTKTKGY--EQALQARVSSIVKVIGRVVLTPEKQQKFELQADEIELID 97
68999********************************************99965555..788889999****************************** PP
TIGR00457 101 eaeeedyplqkkehsleflrelahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvkte.gvdfskdffgkeayLtv 197
+a edyplqkkeh++e+lre+ahLr +tkt++A+ k+Rsa ++aih++f++++fv++++Pi+ts+d+EGage F v+t + d++kdffgk+a Ltv
MMSYN1_0076 98 QAI-EDYPLQKKEHTTEYLREIAHLRAKTKTFNAIFKIRSAAAYAIHRFFNERNFVYIHSPIITSNDAEGAGEAFLVTTReDADYEKDFFGKKASLTV 194
**9.9**************************************************************************846**************** PP
TIGR00457 198 sgqlelEalalalskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavleeakqelkfleknvekkkikkleeiisskf 295
sgql++Ea+a+a++kvyt+gptFRAE+snt +H +EfwmiEpE+aF++l+d++qli++++kyii++++++ +el+f ++++e+ i kl+++ +s+f
MMSYN1_0076 195 SGQLHAEAFAQAFKKVYTFGPTFRAENSNTAKHAAEFWMIEPEVAFADLKDNIQLIQDMVKYIINYIFKHNRRELEFCNEHLENGLIDKLNNVRNSEF 292
************************************************************************************************** PP
TIGR00457 296 aritYtdAieiLkesda.kkkfeledl.wGvdlktehErflaeeyfksPvfvtdyPkeikaFYmkqnddektvaavDllvPkiGEiiGGseReddldk 391
+ tYt+AieiLk++ + +kfe++d+ +G dl tehEr+++e++ k+P+fvt+yPkeikaFYmkqndd+ktvaavDllvP+iGE++GGs+Red+++k
MMSYN1_0076 293 KITTYTQAIEILKQAVKdGHKFEVSDIeFGLDLGTEHERYICEQVNKAPTFVTNYPKEIKAFYMKQNDDNKTVAAVDLLVPGIGELVGGSQREDNYEK 390
**************977799****************************************************************************** PP
TIGR00457 392 LeerlkeegldteelkWyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpRtaesik 454
L +r+ke ++d ++l+Wy +lR yG+ ++GfGlG+eRlv y+tg++nird+ipfpRt++++
MMSYN1_0076 391 LIKRCKEVNIDIDQLEWYNNLRLYGYYKSAGFGLGFERLVMYITGASNIRDVIPFPRTPKNLL 453
***********************************************************9975 PP
>> TIGR00458 aspS_nondisc: aspartate--tRNA(Asn) ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 196.8 4.3 1.9e-61 1.4e-58 12 426 .. 15 452 .. 6 453 .. 0.86
Alignments for each domain:
== domain 1 score: 196.8 bits; conditional E-value: 1.9e-61
TIGR00458 12 gkevllrgwvheirdlGalifvllrdregliqilvkkkkvskelfklikklkkesvvavkGkvkekekapqgleiipeklevlneakeplPldleekv 109
kev + g+v + r+ + f++l d + v k ++ + ++++ + + s+v v G+v + q +e+ ++e +++a e Pl+ +e++
MMSYN1_0076 15 DKEVEILGRVRSNRQGKFVSFMILNDGTTFTDLQVVYK-TKTKGYEQALQARVSSIVKVIGRVVLTPEKQQKFELQADEIELIDQAIEDYPLQKKEHT 111
589*********99866699******998877665544.4455678899999****************************************999877 PP
TIGR00458 110 eaeldtrldarfldlrrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeit..........yfereaflaqsPqlykqvllaa 197
l + l ++ + +aifkirs ++ f++e++f+ +++P + + +eG e f +t +f ++a l+ s ql+ + a
MMSYN1_0076 112 TEYL---REIAHLRAKTKTFNAIFKIRSAAAYAIHRFFNERNFVYIHSPIITSNDAEGAGEAFLVTtredadyekdFFGKKASLTVSGQLHAEAF-AQ 205
5444...3556677789999*******************************************99766666655557999**********98875.77 PP
TIGR00458 198 glervyeiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvaeklkkelevlevkle.........vpeeklerltydeaiei 286
+++vy +P frae++nt +h +e+ i+ e+af+d kd +++++++v+ +++ + ++ ++ele + +le v +++++ ty +aiei
MMSYN1_0076 206 AFKKVYTFGPTFRAENSNTAKHAAEFWMIEPEVAFADLKDNIQLIQDMVKYIINYIFKHNRRELEFCNEHLEnglidklnnVRNSEFKITTYTQAIEI 303
8***********************************************************997777666655222222222567899999******** PP
TIGR00458 287 lrakGk........eikdgedlsteaekllGekmd.glyfitdfPteikPfytmPdednPeisksfdllyrdl.eissGaqrihdydllvekikakGl 374
l+++ k +i+ g dl te e+++ e+++ + f+t++P eik fy+ ++d+ ++ + dll+ + e+ G+qr +y+ l+ + k+ +
MMSYN1_0076 304 LKQAVKdghkfevsDIEFGLDLGTEHERYICEQVNkAPTFVTNYPKEIKAFYMK-QNDDNKTVAAVDLLVPGIgELVGGSQREDNYEKLIKRCKEVNI 400
99875422233222466677***********99872568*************55.558889999***99876449*********************** PP
TIGR00458 375 ePeslksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPrdrkrl 426
+ + l+ y + yG aG GlG erlvm +++ nir+++ fPr +k l
MMSYN1_0076 401 DIDQLEWYNNLRLYGYYKSAGFGLGFERLVMYITGASNIRDVIPFPRTPKNL 452
************************************************9987 PP
>> TIGR00459 aspS_bact: aspartate--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 76.6 3.0 4e-25 3e-22 12 263 .. 11 264 .. 2 302 .. 0.84
2 ! 36.8 0.0 4.5e-13 3.4e-10 453 559 .. 347 450 .. 329 453 .. 0.83
Alignments for each domain:
== domain 1 score: 76.6 bits; conditional E-value: 4e-25
TIGR00459 12 ekslgkkvtlaGWverrkdlGe.liFidlrDkeg..ivqvvsdkkkealelakelrnedvvqvkgkvslreeesknrnldtgeievlaeeitvlnks. 105
++ l+k+v + G v+ +++ G+ + F++l D + +qvv + k++ +e a + r +v+v g+v+l +e++ +++e++a+ei++++++
MMSYN1_0076 11 SELLDKEVEILGRVRSNRQ-GKfVSFMILNDGTTftDLQVVYKTKTKGYEQALQARVSSIVKVIGRVVLTPEKQ-------QKFELQADEIELIDQAi 100
556899********87776.5559*******9995459*****************************9888554.......45666666666666431 PP
TIGR00459 106 kkkPleiekkeaeeevrlkyRYLdLRrpkmqqrlklRskvtkavRnflddkgFleietPiLtkatPeGard.yLvPsRvk...kgefyaLpqsPqlfk 199
+ Pl+ +++ +e+ + +L + ++++ ++k Rs + a+ +f+++++F+ i Pi+t eGa + +Lv +R ++ f+ + s +
MMSYN1_0076 101 EDYPLQKKEHTTEYL--REIAHLRAKTKTFNAIFKIRSAAAYAIHRFFNERNFVYIHSPIITSNDAEGAGEaFLVTTREDadyEKDFFGKKASLTVSG 196
678999888877777..578899999*******************************************765******99888899997666655555 PP
TIGR00459 200 qLL...mvsGvdkYyqiarcfRDeDlR.aDRqPeftqiDlemsFlnqedvmelveklvsevfkevkki 263
qL + ++k y fR e++ a ef i+ e++F++ +d ++l++++v+ +++ ++k+
MMSYN1_0076 197 QLHaeaFAQAFKKVYTFGPTFRAENSNtAKHAAEFWMIEPEVAFADLKDNIQLIQDMVKYIINYIFKH 264
55411157789*************997256679**************************999988775 PP
== domain 2 score: 36.8 bits; conditional E-value: 4.5e-13
TIGR00459 453 spkeedleklekapeealaeayDlvlnGv.elGgGsiRihdkelqekvfeilgideeearekFgflleafeyGaPphaGlalGlDRlvmllaetdsiR 549
pke ++ ++++ ++ + a Dl + G+ el gGs R + e k + ++id + + + + yG aG++lG++Rlvm +++ +iR
MMSYN1_0076 347 YPKEIKAFYMKQNDDNKTVAAVDLLVPGIgELVGGSQREDNYEKLIKRCKEVNIDID----QLEWYNNLRLYGYYKSAGFGLGFERLVMYITGASNIR 440
47777888899999999999********889*******8776655555667777777....34555566679999*********************** PP
TIGR00459 550 dviaFPktak 559
dvi FP+t k
MMSYN1_0076 441 DVIPFPRTPK 450
******9965 PP
>> TIGR00499 lysS_bact: lysine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 113.2 11.2 3.8e-36 2.8e-33 44 491 .. 6 447 .. 1 451 [. 0.75
Alignments for each domain:
== domain 1 score: 113.2 bits; conditional E-value: 3.8e-36
TIGR00499 44 lkneeleekelevsiaGRikakRsmgkatFitlqdesgklqlyvnkdklsedveeleeklldlGDiigvkGklkkt..ktgelsvkveelklltkalr 139
+++ e ++ev i GR+ + R+++ ++F++l+d + l v +++ +++ e+ ++ + i++v G ++ t k+++ ++++e++l+ +a++
MMSYN1_0076 6 IFEQHSELLDKEVEILGRVRSNRQGKFVSFMILNDGTTFTDLQVVYKTKTKGYEQALQAR--VSSIVKVIGRVVLTpeKQQKFELQADEIELIDQAIE 101
5567788889*************99999*********88888888888777766655554..899*******966522778899************** PP
TIGR00499 140 plPekfhGlkdqEtryrkRylDlivnk.esrqtflkRskiikaiRkfldergflEvEtPilqsi.sgGAsAkPFithhnald..vdly.....lRiAp 228
P + + ++ t y + + l + + + + f++Rs ai +f++er+f+ + Pi+ s + GA +t + d d++ l +
MMSYN1_0076 102 DYPLQKK---EHTTEYLREIAHLRAKTkTFNAIFKIRSAAAYAIHRFFNERNFVYIHSPIITSNdAEGAGEAFLVTTREDADyeKDFFgkkasLTVSG 196
9999887...66677777777777664156789***************************98862567766666776655441134431112277777 PP
TIGR00499 229 ElyLKrLivgGlekvyEigrvFRnEGvdt.tHnpEFttiElYqayadyedllelteellktlvkellgtlkikykeeeldlkkpvkkitmleaikkid 325
l+ ++kvy g +FR E +t +H +EF +iE a+ad++d ++l ++++k++++ + k + +el++ ++ + +++++++++
MMSYN1_0076 197 QLHAEA-FAQAFKKVYTFGPTFRAENSNTaKHAAEFWMIEPEVAFADLKDNIQLIQDMVKYIINYIF-----KHNRRELEFCNEHLENGLIDKLNNVR 288
777655.4678**************987638***********************9999999987765.....78889999998888888889998887 PP
TIGR00499 326 .ketgislddlkdsetakalakk.laievaekslslgkilnklfeefvEetliqPtfiteyPaeisPLA.krddenpelteRFElFikgkEianaysE 420
e++i+ ++ e +k++ k+ ++ ev++ + + + ++ ++E+ Ptf+t+yP+ei k++d+n+ + +l + g E
MMSYN1_0076 289 nSEFKIT-TYTQAIEILKQAVKDgHKFEVSDIEFG-LDLGTEHERYICEQVNKAPTFVTNYPKEIKAFYmKQNDDNKTV-AAVDLLVPGIG------E 377
5666666.444555665555554144577554444.467777778889999999***********98751666666665.56899998854......4 PP
TIGR00499 421 lndpldqrerfeeqvaekeagddeasllDedfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFpa 491
l + ++ +e+ +++ + + + l e + + yG +G+G+G +Rlvm +t +++irdv++Fp
MMSYN1_0076 378 LVGGSQREDNYEKLIKRCKEVNIDIDQL-EWYNNLRLYGYYKSAGFGLGFERLVMYITGASNIRDVIPFPR 447
4444444444444444333333332222.44555556*********************************6 PP
>> TIGR00462 genX: EF-P lysine aminoacylase GenX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.8 0.9 1.3e-17 9.6e-15 3 304 .] 134 445 .. 132 445 .. 0.69
Alignments for each domain:
== domain 1 score: 52.8 bits; conditional E-value: 1.3e-17
TIGR00462 3 krakllaaiRafFaergvlEvetpllseapvt...dvhlealktellee.ekekeklyLqtSPEyamKrLLaagsgkifqlakvfRneer.grlHnpE 95
r++ + ai +fF+er+++ + +p++++ ++ ++ l + + ++ e + +k L+ S ++ a+ +k++ ++ +fR e++ ++H+ E
MMSYN1_0076 134 IRSAAAYAIHRFFNERNFVYIHSPIITSNDAEgagEAFLVTTREDADYEkDFFGKKASLTVSGQLHAEA-FAQAFKKVYTFGPTFRAENSnTAKHAAE 230
58888999*****************98765541115555555544332224556788899999999865.7999************99875889**** PP
TIGR00462 96 FtmLEwYrvgadleelmeeveellqevle..........deeaeverlsyaeaferylgidpltasleelkeaaekageaaseeedredlldlllvek 183
F m+E + adl++ ++ ++++++ +++ + ++e + + ++++ + + ++ ++ e++++a + ++ e + + l l ++
MMSYN1_0076 231 FWMIEPEVAFADLKDNIQLIQDMVKYIINyifkhnrrelEFCNEHLENGLIDKLNNVRNSEFKITTYTQAIEILKQAVKDGHKFEVSDIEFGLDLGTE 328
*****999999999999999999998888777666554422222222222233333333333223333333333333344444444455566666666 PP
TIGR00462 184 vepklgke...rptflydyPasqaaLarikkddervAeRfElYikgl.ElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpe 277
e+ + ++ +ptf+++yP++ a ++dd+++ + ++l + g+ El g + + ++ kR +e n ++l+ + + + g +
MMSYN1_0076 329 HERYICEQvnkAPTFVTNYPKEIKAFYMKQNDDNKTVAAVDLLVPGIgELVGGSQREDNYEKLIKRCKEVNIDIDQLEWYN---NLR-----LYGYYK 418
666665432228**********999999998899888889**999997888888888888888888877776665443222...222.....245678 PP
TIGR00462 278 csGvAlGlDRLlmlalgaesieevlaf 304
++G lG++RL+m ++ga++i++v+ f
MMSYN1_0076 419 SAGFGLGFERLVMYITGASNIRDVIPF 445
9***********************986 PP
>> TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.5 0.1 0.0026 2 180 230 .. 207 256 .. 190 275 .. 0.66
2 ! 9.1 0.0 0.00022 0.17 286 311 .. 417 442 .. 406 444 .. 0.87
Alignments for each domain:
== domain 1 score: 5.5 bits; conditional E-value: 0.0026
TIGR00468 180 pirifsigrvfRrda.vdatHlpeFhQveglvvdknvslknLk...glleeflkk 230
++ ++g +fR ++ +a+H +eF +e +v++++Lk +l+++++k
MMSYN1_0076 207 FKKVYTFGPTFRAENsNTAKHAAEFWMIE-----PEVAFADLKdniQLIQDMVKY 256
4689999*****99725789999997665.....455555544111444444444 PP
== domain 2 score: 9.1 bits; conditional E-value: 0.00022
TIGR00468 286 lkvlafGlgieRlamlkygikdiRdl 311
+k +fGlg+eRl+m g ++iRd
MMSYN1_0076 417 YKSAGFGLGFERLVMYITGASNIRDV 442
67899*******************85 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (454 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 238 (0.0530303); expected 89.8 (0.02)
Passed bias filter: 116 (0.0258467); expected 89.8 (0.02)
Passed Vit filter: 15 (0.00334225); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.24
# Mc/sec: 2716.51
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0076 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0077 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0077.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0077/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0077 [L=279]
Description: Cof-like hydrolase 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-40 137.9 6.5 1.2e-40 137.7 6.5 1.0 1 TIGR00099 Cof-subfamily: Cof-like hydrolase
1.4e-18 65.5 3.5 2.1e-12 45.3 0.3 2.1 2 TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0
8.8e-17 59.4 3.1 9.9e-14 49.4 3.1 2.2 1 TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfa
5.1e-15 54.1 1.8 1e-14 53.1 1.8 1.5 1 TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
6e-09 34.3 1.5 3.3e-07 28.6 0.1 2.3 2 TIGR02726 phenyl_P_delta: phenylphosphate carboxylase, delta
3.3e-08 31.1 0.2 0.00049 17.4 0.0 2.2 2 TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosp
3.7e-08 31.4 2.3 1.6e-07 29.4 0.1 2.5 2 TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-ph
6.3e-06 24.4 0.0 0.0019 16.3 0.0 2.3 2 TIGR02461 osmo_MPG_phos: mannosyl-3-phosphoglycerate phospha
7.5e-05 20.3 0.0 0.014 12.9 0.0 2.3 2 TIGR01485 SPP_plant-cyano: sucrose phosphatase
0.00015 19.5 0.2 0.0038 14.9 0.1 2.3 2 TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hy
0.0002 19.4 1.5 0.3 9.2 0.0 2.7 2 TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
0.00036 18.3 0.7 0.22 9.2 0.0 2.4 2 TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase
0.00064 18.0 0.0 0.0027 15.9 0.0 1.9 2 TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB
0.0011 16.4 0.0 0.062 10.8 0.0 2.3 2 TIGR02471 sucr_syn_bact_C: sucrose-phosphate synthase, sucro
0.0016 16.0 4.5 0.0018 15.8 0.4 2.4 3 TIGR00338 serB: phosphoserine phosphatase SerB
0.0053 14.7 0.3 0.033 12.1 0.0 2.2 2 TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydr
Domain annotation for each model (and alignments):
>> TIGR00099 Cof-subfamily: Cof-like hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 137.7 6.5 4.2e-43 1.2e-40 1 256 [] 7 273 .. 7 273 .. 0.83
Alignments for each domain:
== domain 1 score: 137.7 bits; conditional E-value: 4.2e-43
TIGR00099 1 lifiDlDGTLlskdkeispetkealaklrekGikvvlaTGRsykevkeilkelgld....plivanGaavvdengkeilykkpldldlveeilnilkk 94
li++DlDGT l +k ++ k +l+k+++++i+v++aTG +yk++k+ + ++ ++ anGa++ + + e +y +++d+ +v+++++ l++
MMSYN1_0077 7 LIVTDLDGTVLHHGKLANDIDKPILEKAIKNNIHVTIATGQPYKSAKPRADLFNIGehvdLAVLANGALISKISNFEPVYVNKIDNAIVNKMVKKLTE 104
699***************************************999999999888877777999***********88********************** PP
TIGR00099 95 lg.ldvilysd.dsiyfsknknei...feiekkklaepkkevvknqlledddlkillllleaedldkleealkkeeleeelsv...vsssedsieita 184
l+ ++vi++ + +y+++ + e+ ++++ ++ + ++++ ++ +++ d + i+ ++ e+ + le+ +k+e+l+e+l+ ++ + + e+t+
MMSYN1_0077 105 LNiCTVIFTATaSDVYWNNIPFEVdsmIKRNWFERFNKTICSTDGNFDFIDPVQIMI-FVPLEKNQILEDWFKAEKLDEHLTSmrnHIETIPIYEFTN 201
***********8889998876433111334444444444555555555556665554.4445555666666666555555555112666777889*** PP
TIGR00099 185 kgvsKgsalqslaeklgislenviaiGDseNDieMleaagvgvamgnaneelkaladyvtdsndedgvakal 256
++Kg+a++++ae l+++ ++v ++GD++ND++M+e va++na + +k++a+y+td n ++gv+k++
MMSYN1_0077 202 ITATKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEEIPNCVAVENAVDPIKQKAKYITDTNINGGVGKFI 273
*********************************************************************997 PP
>> TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0175-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.5 0.2 1.4e-07 4e-05 1 122 [. 5 132 .. 5 151 .. 0.83
2 ! 45.3 0.3 7.6e-15 2.1e-12 144 213 .. 202 271 .. 169 273 .. 0.92
Alignments for each domain:
== domain 1 score: 21.5 bits; conditional E-value: 1.4e-07
TIGR01487 1 iklvavDiDgTltdknrlislraieairklekkGikvvlvtGnevkfvealavligvsgav...vaEnGgvvlykk.edielankekeslldevkkki 94
ikl+ D+DgT+ ++ +l + + + k+ k+ i v ++tG+ +k ++ a l ++ + v v+ nG++++ + + + +nk ++ +++++ kk
MMSYN1_0077 5 IKLIVTDLDGTVLHHGKLANDIDKPILEKAIKNNIHVTIATGQPYKSAKPRADLFNIGEHVdlaVLANGALISKISnFEPVYVNKIDNAIVNKMVKKL 102
79************9999999999999********************9988888777654333399******9876588999**************** PP
TIGR01487 95 elrdllkneys.raslvvdre.gkdvdevr 122
+++++ ++ ++ as+v + ++vd ++
MMSYN1_0077 103 TELNICTVIFTaTASDVYWNNiPFEVDSMI 132
****99999986666655433156666665 PP
== domain 2 score: 45.3 bits; conditional E-value: 7.6e-15
TIGR01487 144 kgvdKgvgvkklkellGlkkeevaaiGDsenDldlFrvagfkvavanAddelKeiaDlvtenesGegvve 213
+ Kg+++kk++e l ++ ++v++ GD nD+ +F+ vav nA d +K+ a ++t+ + gv +
MMSYN1_0077 202 ITATKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEEIPNCVAVENAVDPIKQKAKYITDTNINGGVGK 271
5689********************************************************9987777766 PP
>> TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.4 3.1 3.5e-16 9.9e-14 1 212 [. 8 268 .. 8 276 .. 0.81
Alignments for each domain:
== domain 1 score: 49.4 bits; conditional E-value: 3.5e-16
TIGR01482 1 iasDlDgTlvdeeralnlsaleairkaesvyillvlvtGrsvkfakelakl..ig.tpdivilenGgeilyneglddkflenleekwerdevvkktes 95
i+ DlDgT+ + + n +++ka + i + ++tG+ +k+ak a l ig d +l+nG++i+ + + + +n+ ++ + +++vkk +
MMSYN1_0077 8 IVTDLDGTVLHHGKLANDIDKPILEKAIKNNIHVTIATGQPYKSAKPRADLfnIGeHVDLAVLANGALISKISNFEPVY-VNKIDNAIVNKMVKKLTE 104
789**************99999999999999**************97765511668899**********9999666555.555556678889999999 PP
TIGR01482 96 feelklqyeteqslvvvsegvdvdavrevikklglelkkv................................................ssGkdldilp 145
+++ ++ +s v + + + + + + ++ +k+ + ++ +
MMSYN1_0077 105 LNICTVIFTATASDVYW-NNIPFEVDSMIKRNWFERFNKTicstdgnfdfidpvqimifvpleknqiledwfkaekldehltsmrnhiETIPIYEFTN 201
99999988744444433.23333333445555666666666677*************************************95555555555556677 PP
TIGR01482 146 kgvdKGkavkylkeklgikpeeilviGDSeNDidlFevavfkvavanAqeelkewadlvteskygeg 212
+ KGka+k+++e l + +++lv GD ND+ +Fe vav nA + +k+ a ++t+ ++ g
MMSYN1_0077 202 ITATKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEEIPNCVAVENAVDPIKQKAKYITDTNINGG 268
899*********************************999999******************8855444 PP
>> TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 53.1 1.8 3.7e-17 1e-14 1 221 [] 7 246 .. 7 246 .. 0.69
Alignments for each domain:
== domain 1 score: 53.1 bits; conditional E-value: 3.7e-17
TIGR01484 1 llffDlDgTLldpklelseelieaLerlrealgvkvvivTGRslaeikellkqlnl....elpliaengalie.aqgeklyaea.lpedvaevllsee 92
l+++DlDgT l+++ + + + Le+ ++ ++ v+i+TG ++++k+ ++ n +l ++a+ + + + ++ e +y+++ ++ v++ ++ +
MMSYN1_0077 7 LIVTDLDGTVLHHGKLANDIDKPILEKAIKN-NIHVTIATGQPYKSAKPRADLFNIgehvDLAVLANGALISKiSNFEPVYVNKiDNAIVNKMVKKLT 103
79************55555556678999999.6*******************7666555455555554444442234677777777777777777666 PP
TIGR01484 93 kelkeieailkslseryv..gtfvedkalevaihysgqk.eleqeldskllerlekigir............kdleleailsrsnalqkegetllevl 175
+ + ++ ++ ++s+ y+ f d ++++++ + k +++ ++++ +++ + k+++l+ +l s + e++ + e++
MMSYN1_0077 104 ELNICTVIFTATASDVYWnnIPFEVDSMIKRNWFERFNKtICSTDGNFDFIDPVQIMIFVpleknqiledwfKAEKLDEHLT-SMRNHIETIPIYEFT 200
6665555556666666664422333333344444444332244444444444444444446676666688888888888874.34778889999**** PP
TIGR01484 176 pagvdKgkalqalleelnlkkeeilafGDsgNDeemlevaglavav 221
+ Kgka+++ e ln++ +++l+fGD++ND m+e +vav
MMSYN1_0077 201 NITATKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEEIPNCVAV 246
*************************************987777765 PP
>> TIGR02726 phenyl_P_delta: phenylphosphate carboxylase, delta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.8 0.2 0.025 7.1 5 27 .. 3 25 .. 1 45 [. 0.70
2 ! 28.6 0.1 1.2e-09 3.3e-07 63 145 .. 186 270 .. 176 279 .] 0.87
Alignments for each domain:
== domain 1 score: 4.8 bits; conditional E-value: 0.025
TIGR02726 5 kniklvildvdgvmtdgrivind 27
knikl++ d+dg + + nd
MMSYN1_0077 3 KNIKLIVTDLDGTVLHHGKLAND 25
9**********965544334455 PP
== domain 2 score: 28.6 bits; conditional E-value: 1.2e-09
TIGR02726 63 avrhraeelkikrfhegikkktepyaqmleemnisdaevcyvgddlvdlsmmkrvglavavgdavadvkevaayvttar..gghg 145
++r + e + i f + k + +m e +n+ +v gd++ d++m+ + +vav +av +k+ a y+t + gg g
MMSYN1_0077 186 SMRNHIETIPIYEFTNITATKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEEIPNCVAVENAVDPIKQKAKYITDTNinGGVG 270
678889999999***9999********************************************************9765115544 PP
>> TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.0 0.0 8.2e-05 0.023 1 67 [. 7 76 .. 7 115 .. 0.76
2 ! 17.4 0.0 1.8e-06 0.00049 167 229 .. 195 255 .. 170 274 .. 0.85
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 8.2e-05
TIGR01486 1 liftDlDgtLldehsYdlgpAkevlerlqelgipvilctSKtaaEveelrkelgle...dpfivEnGaai 67
li+tDlDgt l + + + k++le++ + +i v + t + + + ++ d ++ nGa i
MMSYN1_0077 7 LIVTDLDGTVLHHGKLANDIDKPILEKAIKNNIHVTIATGQPYKSAKPRADLFNIGehvDLAVLANGALI 76
69**********999999999**************99997665555554444444444555555666655 PP
== domain 2 score: 17.4 bits; conditional E-value: 1.8e-06
TIGR01486 167 rfyhvlgaesdKGkAvnalkqlykekekaikvvglGDspnDlpllevvdlavvvkgkdgesks 229
++y + + KGkA++++++ ++ v+ GD nD+ ++e v v+++ +++k+
MMSYN1_0077 195 PIYEFTNITATKGKAIKKMAEILNVD--INDVLVFGDNMNDMTMFEEIPNCVAVENAVDPIKQ 255
5677778899*************997..6778899*****************99988777654 PP
>> TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.1 0.2 0.28 80 1 18 [. 5 23 .. 5 66 .. 0.73
2 ! 29.4 0.1 5.7e-10 1.6e-07 64 139 .. 193 270 .. 183 277 .. 0.84
Alignments for each domain:
== domain 1 score: 1.1 bits; conditional E-value: 0.28
TIGR01670 1 lkllildvdG.vltdGkiy 18
+kl++ d+dG vl Gk+
MMSYN1_0077 5 IKLIVTDLDGtVLHHGKLA 23
5788888888567777764 PP
== domain 2 score: 29.4 bits; conditional E-value: 5.7e-10
TIGR01670 64 elgikelyqGskdklaifeeileklalkdeevafiGddlvdkevlekvGlsvavkdaheelrkvadyvtr..kkGGkg 139
++ i e+ + + k ++++++ e l+++ ++v + Gd+++d++++e++ vav++a++ ++++a+y+t ++GG g
MMSYN1_0077 193 TIPIYEFTNITATKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEEIPNCVAVENAVDPIKQKAKYITDtnINGGVG 270
555666666677888999**************************************************8522678866 PP
>> TIGR02461 osmo_MPG_phos: mannosyl-3-phosphoglycerate phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 6.1 0.0 0.0091 2.6 1 39 [. 7 46 .. 7 77 .. 0.79
2 ! 16.3 0.0 6.9e-06 0.0019 174 226 .. 195 246 .. 170 247 .. 0.78
Alignments for each domain:
== domain 1 score: 6.1 bits; conditional E-value: 0.0091
TIGR02461 1 viftDlDgTLld.etyeagpArevleelkdkglevvfvss 39
+i tDlDgT+l + + +++le++ + +++v +
MMSYN1_0077 7 LIVTDLDGTVLHhGKLANDIDKPILEKAIKNNIHVTIATG 46
589*********3345566778999999999999877664 PP
== domain 2 score: 16.3 bits; conditional E-value: 6.9e-06
TIGR02461 174 rfyevvg.gsdKGkAikvllelyklrlgaivtvglGDsenDlplleavdlaflv 226
+ ye ++ + KGkAik ++e+ + + ++++ GD nD+ ++e + + v
MMSYN1_0077 195 PIYEFTNiTATKGKAIKKMAEILNVDINDVL--VFGDNMNDMTMFEEIPNCVAV 246
45666666789***********988666655..569**********98877766 PP
>> TIGR01485 SPP_plant-cyano: sucrose phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.3 0.0 0.011 3 3 56 .. 7 57 .. 6 108 .. 0.73
2 ! 12.9 0.0 5.1e-05 0.014 165 213 .. 203 250 .. 195 264 .. 0.87
Alignments for each domain:
== domain 1 score: 5.3 bits; conditional E-value: 0.011
TIGR01485 3 llvsdldetlvdrddgdnsallrlnallearrredsllvystGrsyslykelrk 56
l+v+dld t++ ++ + +++ + +le+ ++ ++ +tG+ y+++k
MMSYN1_0077 7 LIVTDLDGTVL-HHGKLANDIDK--PILEKAIKNNIHVTIATGQPYKSAKPRAD 57
79*******99.55555566654..67888888888999999999999886554 PP
== domain 2 score: 12.9 bits; conditional E-value: 5.1e-05
TIGR01485 165 gadkgqalqylleklkiepsqtlvCGdsGndielfeisdvrGvivsnaq 213
+a kg+a++ + e l++ ++ lv Gd nd+ +fe + v v+na
MMSYN1_0077 203 TATKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEE-IPNCVAVENAV 250
589********************************85.45678888876 PP
>> TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.1 0.0 0.11 31 3 16 .. 4 17 .. 2 24 .. 0.87
2 ! 14.9 0.1 1.4e-05 0.0038 145 188 .. 203 246 .. 191 257 .. 0.85
Alignments for each domain:
== domain 1 score: 2.1 bits; conditional E-value: 0.11
TIGR01491 3 mikLvifDldGtLt 16
ikL++ DldGt+
MMSYN1_0077 4 NIKLIVTDLDGTVL 17
69*********976 PP
== domain 2 score: 14.9 bits; conditional E-value: 1.4e-05
TIGR01491 145 vdkkgiavkrlkseLnaskeetvavGDskedasifevadlaial 188
kg+a+k++++ Ln+ ++++ GD ++d+++fe +a+
MMSYN1_0077 203 TATKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEEIPNCVAV 246
56799******************************977666555 PP
>> TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.0 0.3 0.0012 0.34 1 35 [. 6 40 .. 6 112 .. 0.82
2 ! 9.2 0.0 0.0011 0.3 95 129 .. 206 238 .. 158 247 .. 0.83
Alignments for each domain:
== domain 1 score: 9.0 bits; conditional E-value: 0.0012
TIGR01662 1 klvvlDlDgtLiddvdyvteedeaelypevidala 35
kl+v+DlDgt ++ + +++d+ +l + +++ +
MMSYN1_0077 6 KLIVTDLDGTVLHHGKLANDIDKPILEKAIKNNIH 40
89**********88888888888776666655543 PP
== domain 2 score: 9.2 bits; conditional E-value: 0.0011
TIGR01662 95 ktgmleealkrlneidakesvvvGDavltDleaak 129
k ++++++ + ln +d+++++v GD ++D+++++
MMSYN1_0077 206 KGKAIKKMAEILN-VDINDVLVFGD-NMNDMTMFE 238
4588999999997.***********.99***9986 PP
>> TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.5 0.1 0.0027 0.75 1 39 [. 7 46 .. 7 106 .. 0.77
2 ! 9.2 0.0 0.00078 0.22 170 209 .. 201 240 .. 178 247 .. 0.88
Alignments for each domain:
== domain 1 score: 7.5 bits; conditional E-value: 0.0027
TIGR02463 1 lvvsDlDGtLldh.sydwqpAaetlkrLqeagvPvilcts 39
l+v+DlDGt+l h + + +++l++ ++++ v ++t
MMSYN1_0077 7 LIVTDLDGTVLHHgKLANDIDKPILEKAIKNNIHVTIATG 46
69*********96266777778888888888888877775 PP
== domain 2 score: 9.2 bits; conditional E-value: 0.00078
TIGR02463 170 gaeaskgkavnalkkalnekdvkvlgLGDspnDlpLLeva 209
++ a kgka++++ + ln vl GD nD+++ e +
MMSYN1_0077 201 NITATKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEEI 240
67899**************9999***********998865 PP
>> TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.4 0.0 0.97 2.7e+02 5 33 .. 11 40 .. 7 108 .. 0.71
2 ! 15.9 0.0 9.7e-06 0.0027 153 197 .. 203 247 .. 169 250 .. 0.88
Alignments for each domain:
== domain 1 score: -0.4 bits; conditional E-value: 0.97
TIGR01490 5 DlDgT.Ltakdtlleflkklaskeilteee 33
DlDgT L +++++++ k ++k i++++
MMSYN1_0077 11 DLDGTvLHHGKLANDIDKPILEKAIKNNIH 40
899994455677778888888888877544 PP
== domain 2 score: 15.9 bits; conditional E-value: 9.7e-06
TIGR01490 153 geeKvkalaellaeekidlkesyaYsDsisDlpllslvghpvvvn 197
+ K ka++++++ + d +++ +++D ++D+++++ + + v+v+
MMSYN1_0077 203 TATKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEEIPNCVAVE 247
5679999****************************9888877775 PP
>> TIGR02471 sucr_syn_bact_C: sucrose-phosphate synthase, sucrose phosphatase-like domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.7 0.0 0.033 9.2 1 53 [. 7 61 .. 7 107 .. 0.81
2 ! 10.8 0.0 0.00022 0.062 155 205 .. 201 252 .. 167 263 .. 0.83
Alignments for each domain:
== domain 1 score: 3.7 bits; conditional E-value: 0.033
TIGR02471 1 viltdldntLlgddegLaefve.llr.tagkdvsfGiatGrslesalkllkklkl 53
+i+tdld t+l + ++ + +l+ ++++ + iatG+ +sa+ + +++
MMSYN1_0077 7 LIVTDLDGTVLHHGKLANDIDKpILEkAIKNNIHVTIATGQPYKSAKPRADLFNI 61
699******999877666665535664668899************9988877777 PP
== domain 2 score: 10.8 bits; conditional E-value: 0.00022
TIGR02471 155 PlraskelalrylslrwglpleqlLvagdsgndeellrGdtlgvvvgn.hdp 205
+ a+k++a++ ++ ++++++++Lv gd+ nd +++ v v n dp
MMSYN1_0077 201 NITATKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEEIPNCVAVENaVDP 252
45799********************************999999999884454 PP
>> TIGR00338 serB: phosphoserine phosphatase SerB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.5 0.0 0.16 46 11 28 .. 2 19 .. 1 45 [. 0.86
2 ? -3.9 0.1 7 2e+03 91 105 .. 96 110 .. 92 113 .. 0.59
3 ! 15.8 0.4 6.6e-06 0.0018 152 205 .. 205 259 .. 196 267 .. 0.80
Alignments for each domain:
== domain 1 score: 1.5 bits; conditional E-value: 0.16
TIGR00338 11 lkkkklvvfDlDstliee 28
lk+ kl+v DlD t++++
MMSYN1_0077 2 LKNIKLIVTDLDGTVLHH 19
57889*******999865 PP
== domain 2 score: -3.9 bits; conditional E-value: 7
TIGR00338 91 eelvkkLkekgykva 105
+++vkkL e ++ ++
MMSYN1_0077 96 NKMVKKLTELNICTV 110
455666666665555 PP
== domain 3 score: 15.8 bits; conditional E-value: 6.6e-06
TIGR00338 152 akaktllkllekegislektvavGDGanDlsmikaAglgiaf.nakpvlkekadi 205
+k+k ++k++e +++++++++ GD nD++m+++ +a na +k+ka+
MMSYN1_0077 205 TKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEEIPNCVAVeNAVDPIKQKAKY 259
599*******************************998888873455555555554 PP
>> TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.6 0.1 0.41 1.2e+02 1 13 [. 7 19 .. 7 116 .. 0.78
2 ! 12.1 0.0 0.00012 0.033 132 176 .. 196 239 .. 168 240 .. 0.80
Alignments for each domain:
== domain 1 score: 0.6 bits; conditional E-value: 0.41
TIGR01488 1 laifDfDgTLtdq 13
l++ D+DgT+
MMSYN1_0077 7 LIVTDLDGTVLHH 19
6788999998653 PP
== domain 2 score: 12.1 bits; conditional E-value: 0.00012
TIGR01488 132 iegevnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlpllkl 176
i + +++ Kgk++k+ e + d +++ +GD +nD++++++
MMSYN1_0077 196 IYE-FTNITATKGKAIKKMAEILNVDINDVLVFGDNMNDMTMFEE 239
444.6788899******99999999999**************985 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (279 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 256 (0.057041); expected 89.8 (0.02)
Passed bias filter: 126 (0.0280749); expected 89.8 (0.02)
Passed Vit filter: 27 (0.00601604); expected 4.5 (0.001)
Passed Fwd filter: 16 (0.00356506); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 16 [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.20
# Mc/sec: 2003.28
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0077 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0079 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0079.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0079/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0079 [L=318]
Description: tsaD tRNA threonylcarbamoyladenosine. Found in tRNAs decoding ANN (ile, Met, Thr, Lys, Asn, Ser and Arg). 5=Equivalog tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-119 396.4 0.1 2.1e-119 396.2 0.1 1.0 1 TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine mo
6.5e-101 335.5 0.3 7.3e-101 335.4 0.3 1.0 1 TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 fam
1.8e-58 196.1 0.1 2.1e-58 195.9 0.1 1.0 1 TIGR03722 arch_KAE1: universal archaeal protein Kae1
2.2e-07 29.1 0.1 4.7e-07 28.0 0.0 1.6 2 TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modific
Domain annotation for each model (and alignments):
>> TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 396.2 0.1 1.9e-122 2.1e-119 1 313 [. 3 313 .. 3 314 .. 0.98
Alignments for each domain:
== domain 1 score: 396.2 bits; conditional E-value: 1.9e-122
TIGR03723 1 iLgiesscDetavavvedgkevlsnvvasqielhakygGvvPElAsRahleklaplveealeeagvkledidaiAvtagPGLvgaLlvGvsvakalal 98
iL+iesscDe ++++++++k +l+nv++sqi+ h+ +gGvvPElA+R h+++++ ++++al+ea+++++did +A+t++PGL+g+L+vG va++++l
MMSYN1_0079 3 ILAIESSCDEFSISIIDNNK-ILTNVISSQIKDHQVFGGVVPELAARLHVQNFNWVLKAALTEANLSIKDIDYVAYTKSPGLIGSLIVGKLVAETISL 99
89***************998.***************************************************************************** PP
TIGR03723 99 alkkpliavnHlegHllaalleekelefpflaLlvSGghtqlllvkevgeyellgetlDDaaGEafDKvakllglgyPgGpaidklakegdekafklp 196
++kp++a++H++gH++ a +e +e+ +p+la++vSGghtq+ +++ ++++++g+t+DDa+GE++DKva++lgl+yPgGp +dkla +g+++++ lp
MMSYN1_0079 100 YINKPILALDHIQGHIFGASIE-NEFIYPVLAMVVSGGHTQIEIINSANDFQIIGSTRDDAIGECYDKVARVLGLSYPGGPILDKLALKGNKDSYLLP 196
**********************.99*********************************************************************9999 PP
TIGR03723 197 rpllekkeldfSFsGLKtavlnlveklkeeeeelekadiaasfqeavvdvlveklkralkktklktlvvaGGvaaNsalrekleelaekkgle.vllp 293
+ ++++dfS+sGLKta++nl+++l+++++e++ +d aasfq ++++++ +kl++a+k++k ktl+vaGGv+aNs++r+ + +l ek +++ +++p
MMSYN1_0079 197 VLKD-EDNYDFSYSGLKTACINLIHNLNQKNQEINLEDFAASFQYTATNIVEKKLEKAIKEFKPKTLTVAGGVSANSEIRKIILRLGEKYSIKnTFVP 293
7655.69**********************************************************************************99875899* PP
TIGR03723 294 klklctDNaamiaaagaerl 313
k+++ctDNaamia +++e++
MMSYN1_0079 294 KMSYCTDNAAMIAKLAYEKI 313
****************9975 PP
>> TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 335.4 0.3 6.5e-104 7.3e-101 1 305 [] 4 306 .. 4 306 .. 0.98
Alignments for each domain:
== domain 1 score: 335.4 bits; conditional E-value: 6.5e-104
TIGR00329 1 LgiEtscddtgvavvdeekkvlanlkisqaklhakegGvvPelAsrhHaekipkllekalkesnvelseidliavtagPGlagaLlvgatvArsLala 98
L+iE+scd+ +++++d+ +k+l+n+ +sq+k h+ gGvvPelA+r H ++++ +l++al e+n+++++id +a+t+ PGl+g+L+vg vA +++l
MMSYN1_0079 4 LAIESSCDEFSISIIDN-NKILTNVISSQIKDHQVFGGVVPELAARLHVQNFNWVLKAALTEANLSIKDIDYVAYTKSPGLIGSLIVGKLVAETISLY 100
89***************.88****************************************************************************** PP
TIGR00329 99 ldkPligvnHllgHilaplletkklqlpfvsLlvSGGhtqiiavksiedyevlgetlDdavGealDkvarelglkypggpaieelakkgkekkfefpl 196
+kP+++ +H++gHi+ + +e++ +p+++++vSGGhtqi ++s +d++++g t Dda+Ge++Dkvar lgl ypggp++++la kg+++++ +p+
MMSYN1_0079 101 INKPILALDHIQGHIFGASIENE-FIYPVLAMVVSGGHTQIEIINSANDFQIIGSTRDDAIGECYDKVARVLGLSYPGGPILDKLALKGNKDSYLLPV 197
********************999.99*****************************************************************8888876 PP
TIGR00329 197 pltkkakldfsfSglktaalrkleklkseleeaelediaysfqeavidhliektkralkkkelkelvlaGGvsaNkrLrekleelleeln.vefylpp 293
l+++ ++dfs+Sglkta+++ +++l+++++e +led+a+sfq ++ + + +k+++a+k+ ++k+l++aGGvsaN+++r+ + +l e+ + ++++p+
MMSYN1_0079 198 -LKDEDNYDFSYSGLKTACINLIHNLNQKNQEINLEDFAASFQYTATNIVEKKLEKAIKEFKPKTLTVAGGVSANSEIRKIILRLGEKYSiKNTFVPK 294
.7788889*****************************************************************************999984579**** PP
TIGR00329 294 lefcsDNgamIa 305
+ +c+DN+amIa
MMSYN1_0079 295 MSYCTDNAAMIA 306
***********8 PP
>> TIGR03722 arch_KAE1: universal archaeal protein Kae1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 195.9 0.1 1.9e-61 2.1e-58 1 293 [. 3 309 .. 3 317 .. 0.88
Alignments for each domain:
== domain 1 score: 195.9 bits; conditional E-value: 1.9e-61
TIGR03722 1 vlGiestahtlgvgivdeekeilanvkktyvpek...gGihPreaaehhaeaikkvlkealeeakvsledidavafsqGPGlgPaLrvvataaraLal 95
+l ies +++++i+d++ +il+nv ++ + ++ gG+ P+ aa+ h ++++ vlk al ea++s++did va+++ PGl +L v+ +a +++l
MMSYN1_0079 3 ILAIESSCDEFSISIIDNN-KILTNVISSQIKDHqvfGGVVPELAARLHVQNFNWVLKAALTEANLSIKDIDYVAYTKSPGLIGSLIVGKLVAETISL 99
689**************66.666665554444431337************************************************************ PP
TIGR03722 96 klekplvgvnhavahveigrlatgakdPvv.lyvsGgntqvlal.ekgryrvfGetlDiavGnllDkfaRevglahPGgpkieklaekgkelielPyv 191
+++kp+++ +h+ +h+ + ++ ++ Pv+ + vsGg+tq+ ++ +++ ++++G t D a+G + Dk+aR +gl++PGgp ++kla kg++ l v
MMSYN1_0079 100 YINKPILALDHIQGHIFGASIENEFIYPVLaMVVSGGHTQIEIInSANDFQIIGSTRDDAIGECYDKVARVLGLSYPGGPILDKLALKGNKDSYLLPV 197
****************************853889*******76615689****************************************988877667 PP
TIGR03722 192 vkGm...dlsfsGlltaalralkkg......akledvcyslqetafamlvevteRalaltekkevllvGGvaankrLremleemaeergakfkvvp.k 279
+k + d+s+sGl ta ++++++ +led ++s+q ta +++ e+a++ + k + ++GGv+an+++r+++ ++ e+ +k ++vp +
MMSYN1_0079 198 LKDEdnyDFSYSGLKTACINLIHNLnqknqeINLEDFAASFQYTATNIVEKKLEKAIKEFKPKTLTVAGGVSANSEIRKIILRLGEKYSIKNTFVPkM 295
77642228*********98876532222344899*****************************************************99987765527 PP
TIGR03722 280 eyagDngamiaytG 293
+y++Dn+amia +
MMSYN1_0079 296 SYCTDNAAMIAKLA 309
9**********875 PP
>> TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.0 0.0 4.2e-10 4.7e-07 1 94 [. 3 111 .. 3 139 .. 0.91
2 ? -3.0 0.0 1.2 1.4e+03 149 191 .. 251 309 .. 226 316 .. 0.49
Alignments for each domain:
== domain 1 score: 28.0 bits; conditional E-value: 4.2e-10
TIGR03725 1 iLaiDTsteacsvalledgevvaes...............iedsgrrhselllpaieellaeaglslqdldaiavglGPGsFTGlRiGlatakgLala 83
iLai++s +++s+ ++++++++ e ++r h ++ ++++l+ea+ls++d+d +a ++ PG +l +G +a +++l
MMSYN1_0079 3 ILAIESSCDEFSISIIDNNKILTNVissqikdhqvfggvvPELAARLHVQNFNWVLKAALTEANLSIKDIDYVAYTKSPGLIGSLIVGKLVAETISLY 100
8***************99996666666669999999999999******************************************************** PP
TIGR03725 84 lgipvvgvssl 94
++p+++++
MMSYN1_0079 101 INKPILALDHI 111
*****998766 PP
== domain 2 score: -3.0 bits; conditional E-value: 1.2
TIGR03725 149 lealkesn.rvilvgsgaeaya...............aiavvsknsealpnaqallrla 191
++a+ke++ +++ v g++a + + v+k s na+ +++la
MMSYN1_0079 251 EKAIKEFKpKTLTVAGGVSANSeirkiilrlgekysiKNTFVPKMSYCTDNAAMIAKLA 309
44444444433333333333322344334333333221144444444455666666665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (318 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 247 (0.0550357); expected 89.8 (0.02)
Passed bias filter: 149 (0.0331996); expected 89.8 (0.02)
Passed Vit filter: 16 (0.00356506); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 2283.31
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0079 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0080 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0080.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0080/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0080 [L=73]
Description: PF09954 family protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (73 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 149 (0.0331996); expected 89.8 (0.02)
Passed bias filter: 75 (0.0167112); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 499.20
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0080 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0081 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0081.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0081/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0081 [L=452]
Description: mnmE_trmE_thdF: tRNA modification GTPase TrmE 5=Equivalog tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-111 370.4 28.4 3.9e-111 370.2 28.4 1.0 1 TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
2.1e-33 113.9 10.1 2.1e-33 113.9 10.1 1.9 2 TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
4.2e-26 89.7 7.3 6.3e-26 89.0 7.3 1.2 1 TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation
2.4e-21 74.2 6.5 2.4e-21 74.2 6.5 1.8 2 TIGR00231 small_GTP: small GTP-binding protein domain
6.7e-18 63.0 11.7 1.6e-17 61.7 11.7 1.7 1 TIGR00436 era: GTP-binding protein Era
7.2e-15 53.0 12.2 1.7e-10 38.7 1.4 2.4 2 TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding prote
9.8e-12 42.6 18.8 3e-10 37.7 4.9 2.6 2 TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
2.5e-11 41.6 3.9 7.3e-11 40.0 3.9 1.8 1 TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding prote
2.3e-10 37.9 6.3 3.5e-10 37.3 6.3 1.2 1 TIGR03156 GTP_HflX: GTP-binding protein HflX
1.5e-09 35.1 10.2 2.8e-09 34.2 10.2 1.4 1 TIGR00437 feoB: ferrous iron transport protein B
2.3e-05 21.5 2.1 2.3e-05 21.5 2.1 2.0 2 TIGR02729 Obg_CgtA: Obg family GTPase CgtA
0.00012 18.4 1.5 0.00016 17.9 1.5 1.1 1 TIGR00993 3a0901s04IAP86: chloroplast protein import compone
0.00019 19.0 4.7 0.00028 18.4 0.2 2.5 2 TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase
0.0037 14.9 0.0 0.016 12.8 0.0 2.1 2 TIGR03263 guanyl_kin: guanylate kinase
Domain annotation for each model (and alignments):
>> TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 370.2 28.4 1.2e-113 3.9e-111 1 446 [] 11 452 .] 11 452 .] 0.90
Alignments for each domain:
== domain 1 score: 370.2 bits; conditional E-value: 1.2e-113
TIGR00450 1 AtallksaisiirlSGpdsleilkkltnkkktaegnriqyvyiidsnnkalddelllllvaPkSytgeDviEiqcHGsvlivqeilqllLkkGarlAk 98
At + ai++ir+SG +++ i++kl+ k+k+ e +r + + +n+++d+++l ++vaP+S+tge+v+Ei cHG++l ++i+++l+++Gar+A
MMSYN1_0081 11 ATNISTQAIALIRVSGSEAFLIVNKLI-KDKKLEEKRGLFLRKLYFENELIDEVVLSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQSGARMAL 107
7888899********************.77788888888889999999************************************************** PP
TIGR00450 99 pGEFtkrafLngkldLtqaeainelilaknekvkdialnkLkGelkvkieelrkkllkllaevevniDyeedddeldqleevslnqklkkiiaelkdl 196
GEF++r+fLngk+dL qae in+li akn+ +++i +++++G + i el+++ll++++ ++v iDy+++dd + + l + l+ i +++++l
MMSYN1_0081 108 RGEFSQRSFLNGKIDLIQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDV-EGSSIEDLTNLLEVINDQINKL 204
***********************************************************************9987.33667778889999******** PP
TIGR00450 197 lnsrkkleklkdglklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvly 294
l k k ++g+k ai+G+tNvGKSS+lNal+++d+aiV+di+GttRD+vE++++le + ++l+DtAGiR++ d vE lGi ks+++i+eadlvl+
MMSYN1_0081 205 LMRSKMAFKNSEGIKTAIIGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLF 302
99644467999*************************************************************************************** PP
TIGR00450 295 vlDaskpltkddeliitlkkkkkdlllvlNKiDLa.eleilkselkltvsllsakqlkikelvdlltekinalyskekde.ldlalisssealillek 390
v++ ++ + d++ i++ k+k +l++NK++ ++e ++ ++ ++ + i+ +d+l+ +in+++ +e+ +d ++ ++++l+e+
MMSYN1_0081 303 VVNKENIN-DSDNQEIFELLKDKTYILIVNKAEKLsQTEKQNL--EKKYENIVF-TSAINHDIDQLVLRINQMFLNEEISkNDELILIGLNQITLVEQ 396
**987777.5555666777788999999999986525555555..555666654.45677789999999999999877663555555666668***** PP
TIGR00450 391 aiaeleqlleklekqlfldllvvdlreaiealgqvtgetvtedlldeiFkeFClGK 446
++++l +l+ ++ + d+ vdl+ a + l++++g + +++d+iF+++ClGK
MMSYN1_0081 397 IKNKLSTALSVIKSGMPIDIVNVDLYDAWNLLNELIGVEYEDEIIDNIFRKYCLGK 452
*******************************************************9 PP
>> TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 0.0 0.85 2.7e+02 98 123 .. 16 41 .. 9 51 .. 0.76
2 ! 113.9 10.1 6.5e-36 2.1e-33 147 314 .. 188 350 .. 125 394 .. 0.85
Alignments for each domain:
== domain 1 score: -1.8 bits; conditional E-value: 0.85
TIGR03594 98 eeiaklLrkskkpvilvvNKvdnkke 123
++ ++l+r s+++ +l+vNK+ ++k+
MMSYN1_0081 16 TQAIALIRVSGSEAFLIVNKLIKDKK 41
56678899999999*****9866554 PP
== domain 2 score: 113.9 bits; conditional E-value: 6.5e-36
TIGR03594 147 rgikdLldeileelpeeeeeeeee.eeeepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevkgkkylliDTAGirrkkkveekv 243
+++++Ll+ i +++++ +++ +++e ik aiiG+ NvGKS+++Nal++e+++iv+di+GtTrD ++ +++ ++ ++ liDTAGir+ + v v
MMSYN1_0081 188 EDLTNLLEVINDQINKLLMRSKMAfKNSEGIKTAIIGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDV---V 282
556677777777776664433333144678***********************************************************99887...7 PP
TIGR03594 244 eklsvlrtlkaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkelee 314
e+l +l++ + i++ad+vl+v++ ++ + +++i +l++ k +++vNK ++ +++e+++l+k++e+
MMSYN1_0081 283 ENLGILKSKNLINEADLVLFVVNKENINDSDNQEIFELLK--DKTYILIVNKAEKL-SQTEKQNLEKKYEN 350
99********************988766666778888875..5789**********.88888888888664 PP
>> TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 89.0 7.3 2e-28 6.3e-26 4 170 .. 214 375 .. 211 396 .. 0.82
Alignments for each domain:
== domain 1 score: 89.0 bits; conditional E-value: 2e-28
TIGR03918 4 kaerlhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeL.GelRvektrevlektdlallvvdaeael 100
++e ++ a++G++N+GKSs++Nal+++d aiv d+pGtT D ve ++ l ++ liDTaG+ ++++ +l + k+++ ++++dl+l+vv++e+ +
MMSYN1_0081 214 NSEGIKTAIIGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENV-SLNLIDTAGIRKTSDVvENLGILKSKNLINEADLVLFVVNKENIN 310
56778899******************************************99.5799******99887615689*********************888 PP
TIGR03918 101 eeleeelleelkekkipvivvlnkidlkeeekekeklekkkeeevvlvsakekegieelkealiellpee 170
+ ++e++e lk+k +i+++nk+++ +++ ++++ +kk e++v++sa +++i++l ++ ++ +e
MMSYN1_0081 311 DSDNQEIFELLKDK--TYILIVNKAEKLSQT--EKQNLEKKYENIVFTSAI-NHDIDQLVLRINQMFLNE 375
88888999999887..59********99986..444445555556666655.567899998888876433 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.6 0.0 3.1 9.9e+02 111 143 .. 25 57 .. 15 64 .. 0.74
2 ! 74.2 6.5 7.3e-24 2.4e-21 3 143 .. 217 355 .. 215 365 .. 0.88
Alignments for each domain:
== domain 1 score: -2.6 bits; conditional E-value: 3.1
TIGR00231 111 kgvpiilvvnKiDlkddlktkvkslfaklnaep 143
+g+ l vnK + ++l++k + ++ kl++e
MMSYN1_0081 25 SGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFEN 57
566677888988766678888888888888875 PP
== domain 2 score: 74.2 bits; conditional E-value: 7.3e-24
TIGR00231 3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaG.qedfdairrlyvreverslevvdivilvldveeglek 99
ik +i+G+ +vGKs++ln l+ ++ +i+ + pg+trd+v+ qi ++ + +nl+DTaG ++ d +++l + +++ ++ ++d+v++v+ e+++ +
MMSYN1_0081 217 GIKTAIIGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLEN--VSLNLIDTAGiRKTSDVVENLGILKSKNLINEADLVLFVVNKENINDS 312
58899*******************************************..88********877777889999************************** PP
TIGR00231 100 qtkeiiheakkkgvpiilvvnKiDlkd.dlktkvkslfaklnaep 143
+ +ei++ +k ++ il vnK + + + k+ ++ ++ + +
MMSYN1_0081 313 DNQEIFELLK--DKTYILIVNKAEKLSqTEKQNLEKKYENIVFTS 355
**********..99**********999555555555555555544 PP
>> TIGR00436 era: GTP-binding protein Era
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 61.7 11.7 5e-20 1.6e-17 2 163 .. 219 373 .. 218 426 .. 0.75
Alignments for each domain:
== domain 1 score: 61.7 bits; conditional E-value: 5e-20
TIGR00436 2 fvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknke.del 98
+ ai+G++nvGKS +lN l++++ +iv +++ TTr ++g++ ++ +iDt G+ + +++l + ++ ++e dl+lfvv+ ++ n + ++
MMSYN1_0081 219 KTAIIGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLFVVNKENINDSdNQE 316
689**************************************9999999******************999999******************99994556 PP
TIGR00436 99 lleklqklkapvvlalnkldnkekdkllelidkeasllefkeiveisalkgenveelkaiveakl 163
+ e l++ k +l++nk ++ +++k++ ++++iv +sa + + + + +i++ l
MMSYN1_0081 317 IFELLKD-K-TYILIVNKAEKLS------QTEKQNLEKKYENIVFTSAINHDIDQLVLRINQMFL 373
7777764.4.4567777766554......444444444444566666665544433333333333 PP
>> TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.7 1.4 5.4e-13 1.7e-10 90 173 .. 189 275 .. 179 287 .. 0.81
2 ! 19.1 3.6 4.8e-07 0.00015 16 101 .. 291 371 .. 286 392 .. 0.78
Alignments for each domain:
== domain 1 score: 38.7 bits; conditional E-value: 5.4e-13
TIGR03596 90 kvkkilkaikkllkekkeklkakglkkkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqq..wiklsk.eleLlDtPGi 173
+++++l+ i++ +++ + k +++ i++ ++G NvGKS+++N l+++ +a v + pg T+ +i+l++ +l+L+Dt Gi
MMSYN1_0081 189 DLTNLLEVINDQINKLLMRSKMAFKNSEGIKTAIIGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVegQINLENvSLNLIDTAGI 275
55667777777777777776666667788************************************97511566666689******98 PP
== domain 2 score: 19.1 bits; conditional E-value: 4.8e-07
TIGR03596 16 keklklvDvvievlDARiplssknpeleelvknkprlivlnkaDladpektkkwlkyfeekgkkalavnakkkkkvkkilkaikkl 101
k+ ++ +D+v+ v+ s n+e+ el+k+k ++++nka+ +++++++++k++e+ +++++a ++ ++ +++ i+++
MMSYN1_0081 291 KNLINEADLVLFVVNKENINDSDNQEIFELLKDKTYILIVNKAEKLSQTEKQNLEKKYEN----IVFTSAINH-DIDQLVLRINQM 371
5667899*************************************************9994....444444333.333444444433 PP
>> TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.7 4.9 9.5e-13 3e-10 151 226 .. 213 286 .. 183 299 .. 0.75
2 ! 9.4 7.6 0.00038 0.12 60 129 .. 292 364 .. 286 386 .. 0.74
Alignments for each domain:
== domain 1 score: 37.7 bits; conditional E-value: 9.5e-13
TIGR03597 151 karekkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldli..eipldk.esvllDtpGiineeqianlls 226
k++e+ ++ ++G+tNVGKSs++N+l+++ k + +pgTT d++ +i+l++ l+Dt+Gi +++ +++ l
MMSYN1_0081 213 KNSEGIKTAIIGQTNVGKSSILNALINED---KA--IVTDIPGTTRDIVegQINLENvSLNLIDTAGIRKTSDVVENLG 286
55668999******************443...34..4568*****99872258886514579******99998887765 PP
== domain 2 score: 9.4 bits; conditional E-value: 0.00038
TIGR03597 60 slsekkalvvavvDifdlegslikelkrfvkenkvllvvNKidllpksvkle...kikewlkkeakeeglkpv 129
+l ++ lv+ vv ++++s +e+ +++k++ ++l+vNK + l ++ k++ k ++ + ++a ++ +++
MMSYN1_0081 292 NLINEADLVLFVVNKENINDSDNQEIFELLKDKTYILIVNKAEKLSQTEKQNlekKYENIVFTSAINHDIDQL 364
677889999************************************9877654111445555555555555544 PP
>> TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.0 3.9 2.3e-13 7.3e-11 12 158 .. 211 352 .. 204 367 .. 0.79
Alignments for each domain:
== domain 1 score: 40.0 bits; conditional E-value: 2.3e-13
TIGR03598 12 qlpedklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevne...elrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvl 106
++++++++ a++G+ NvGKSs++NaL+n+ a + PG T+ i ++n +l l+D G + ++++ e++ l ++ L + ++L l
MMSYN1_0081 211 AFKNSEGIKTAIIGQTNVGKSSILNALINED-KAIVTDIPGTTRDIVEGQINLenvSLNLIDTAGI---RKTSDVVENLGILKSKNLINEADLV---L 301
567888999********************98.7999**********9888843224889***9985...6777889999999999999998874...3 PP
TIGR03598 107 lvDirhelkelD.lellellkeakipvlvvltKaDklkkselkkalkkvkkel 158
v + +++++D +e++ellk++ +++++++Ka kl+++e+++ kk+++ +
MMSYN1_0081 302 FVVNKENINDSDnQEIFELLKDK--TYILIVNKAEKLSQTEKQNLEKKYENIV 352
33456666666615667777654..578899**********999999887754 PP
>> TIGR03156 GTP_HflX: GTP-binding protein HflX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.3 6.3 1.1e-12 3.5e-10 175 350 .. 203 371 .. 184 372 .. 0.75
Alignments for each domain:
== domain 1 score: 37.3 bits; conditional E-value: 1.1e-12
TIGR03156 175 kqreeqrkkrkksevptvalvGYTNaGKstllnaltka.evlaedklFATLdpttrrlklpeeeevlltDTVGFirkLPheLveaF..kaTLeevaea 269
k +++ + k+se ++ a++G TN GKs++lnal+++ ++++ d +T d +++l++ ++ l DT G irk ++ve + ++ea
MMSYN1_0081 203 KLLMRSKMAFKNSEGIKTAIIGQTNVGKSSILNALINEdKAIVTDIPGTTRDIVEGQINLENV-SLNLIDTAG-IRKT-SDVVENLgiLKSKNLINEA 297
333344455577889999*****************996378999****************877.899******.6664.56777651123346789** PP
TIGR03156 270 dlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleekkeeavlvsAkkgegleeLleaieea 350
dl+l vv + + +++ +e++e l ++++ +l++Nk++kl+++e ++le+k+e+ v+ sA + +++++L +i+++
MMSYN1_0081 298 DLVLFVVNKENINDSDN----QEIFELL--KDKTYILIVNKAEKLSQTEKQNLEKKYENIVFTSAIN-HDIDQLVLRINQM 371
*******8766665544....4455544..46789********************999999999875.6789998888775 PP
>> TIGR00437 feoB: ferrous iron transport protein B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.2 10.2 8.6e-12 2.8e-09 1 87 [. 224 311 .. 224 409 .. 0.82
Alignments for each domain:
== domain 1 score: 34.2 bits; conditional E-value: 8.6e-12
TIGR00437 1 GnpNvGKstlfnaLtgsn.qkvgNwpGvTVekkegklelkgedieivDlPGiYsLttvsldEkvardyllnekadLvvnvvdasnleR 87
G+ NvGKs+++naL +++ + v pG+T ++ eg+++l++ ++++D+ Gi ++v ++ + + l ++adLv+ vv+ +n++
MMSYN1_0081 224 GQTNVGKSSILNALINEDkAIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLFVVNKENIND 311
99************987526789*************************************9999999999999***********9975 PP
>> TIGR02729 Obg_CgtA: Obg family GTPase CgtA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.0 0.61 1.9e+02 279 327 .. 117 166 .. 92 168 .. 0.83
2 ! 21.5 2.1 7.1e-08 2.3e-05 161 325 .. 221 369 .. 218 373 .. 0.78
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 0.61
TIGR02729 279 vlnkidlleeeeleellkelkeel.ekkvlaisaltkegleellkkllel 327
+ kidl+++e +++l+++ ++ + v ++s +++ + el+++ll++
MMSYN1_0081 117 LNGKIDLIQAEGINNLIHAKNDLAlKIGVANMSGSNNKAIIELKDNLLDI 166
45699999999999888877766568999999999999999999998876 PP
== domain 2 score: 21.5 bits; conditional E-value: 7.1e-08
TIGR02729 161 glvGlpnaGkStllsav.saakpkiadYpFtTlvPnLGvveveeeksfvlaDiPgliegasegagLGleFLkH.iertrvllhlidlseedekdpved 256
+++G n+GkS++l+a+ + k+ ++d p tT G +++e+ s+ l D g+ + +LG+ k i+ + ++l++++ ++++++d e
MMSYN1_0081 221 AIIGQTNVGKSSILNALiNEDKAIVTDIPGTTRDIVEGQINLEN-VSLNLIDTAGIRKTSDVVENLGILKSKNlINEADLVLFVVNKENINDSDNQEI 317
79************98615678899******************9.9**************999****865554289999******9999966554443 PP
TIGR02729 257 leviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeelekkvlaisaltkegleellkkll 325
+e L++k+ ++++nk++ l+++e +++l++++ ++++++sa+ ++++++l+ ++
MMSYN1_0081 318 FE-----------LLKDKTYILIVNKAEKLSQTE----KQNLEKKY-ENIVFTSAI-NHDIDQLVLRIN 369
33...........47889999*****99988544....44555554.556667776.566777776665 PP
>> TIGR00993 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.9 1.5 5e-07 0.00016 121 209 .. 220 304 .. 196 328 .. 0.82
Alignments for each domain:
== domain 1 score: 17.9 bits; conditional E-value: 5e-07
TIGR00993 121 ilvlGkaGvGksatinsilgevkasidafglattsvreieGlvdGvkirvidtpGlkssaldqsknekvlssvkklikksppdivlyvd 209
++G++ vGks+ +n++++e ka + +t+ + e + ++ v +++idt G++ ++d +n +l+s k+li d+vl+v
MMSYN1_0081 220 TAIIGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRK-TSDVVENLGILKS-KNLIN--EADLVLFVV 304
5689*********************9999999999999888999************87.579999****998.77775..569999863 PP
>> TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.4 0.2 8.8e-07 0.00028 124 159 .. 219 254 .. 153 296 .. 0.75
2 ? 1.9 0.5 0.1 33 71 102 .. 325 355 .. 317 378 .. 0.79
Alignments for each domain:
== domain 1 score: 18.4 bits; conditional E-value: 8.8e-07
TIGR00157 124 isvfaGqSGVGKSSLiNlldpevkqkvkevseklkl 159
+ ++Gq VGKSS++N+l e k+ v+++ ++++
MMSYN1_0081 219 KTAIIGQTNVGKSSILNALINEDKAIVTDIPGTTRD 254
46799***********************99877653 PP
== domain 2 score: 1.9 bits; conditional E-value: 0.1
TIGR00157 71 epiivlnkkdlleeedaekeqleelknlgYkv 102
+ i+++nk ++l++++ + + ++++n+ ++
MMSYN1_0081 325 TYILIVNKAEKLSQTEKQ-NLEKKYENIVFTS 355
56899********99998.8999999987754 PP
>> TIGR03263 guanyl_kin: guanylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.8 0.0 4.9e-05 0.016 6 45 .. 222 261 .. 218 271 .. 0.90
2 ? -3.1 0.0 3.7 1.2e+03 139 176 .. 395 430 .. 394 432 .. 0.69
Alignments for each domain:
== domain 1 score: 12.8 bits; conditional E-value: 4.9e-05
TIGR03263 6 isgpsGvGKstlvkklleekeelklsvSattRkpRegEvd 45
i g + vGKs+++++l++e++ + + + ttR+ eg ++
MMSYN1_0081 222 IIGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQIN 261
678999**************************98887765 PP
== domain 2 score: -3.1 bits; conditional E-value: 3.7
TIGR03263 139 eviekRlekAkkelkaaeefdyvivNddlekaveelks 176
e+i+++l++A + +k+ ivN dl +a + l++
MMSYN1_0081 395 EQIKNKLSTALSVIKSGMPI--DIVNVDLYDAWNLLNE 430
57778888887777765544..4788888888877766 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (452 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 384 (0.0855615); expected 89.8 (0.02)
Passed bias filter: 101 (0.0225045); expected 89.8 (0.02)
Passed Vit filter: 27 (0.00601604); expected 4.5 (0.001)
Passed Fwd filter: 14 (0.00311943); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 14 [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 2496.51
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0081 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0082 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0082.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0082/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0082 [L=81]
Description: S20: ribosomal protein S20 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.1e-19 65.9 13.2 8.8e-19 65.8 13.2 1.0 1 TIGR00029 S20: ribosomal protein bS20
Domain annotation for each model (and alignments):
>> TIGR00029 S20: ribosomal protein bS20
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 65.8 13.2 2e-22 8.8e-19 1 80 [. 1 79 [. 1 81 [] 0.93
Alignments for each domain:
== domain 1 score: 65.8 bits; conditional E-value: 2e-22
TIGR00029 1 manikSaeKRirqnekrrlrNksyksklktliKkveasveagekdkakealkevakkidkaakkgiihkNkAarkksrla 80
manikS eKR+ +nek rl Nk ks++kt+iKk ++ +++++ka e ++ + + +dk kkgi + NkAar ksrl
MMSYN1_0082 1 MANIKSQEKRVLTNEKSRLANKAFKSEIKTAIKKALNAKSNDDANKA-ELVNHAVSLVDKGLKKGIFKDNKAAREKSRLM 79
9***********************************99888888866.56788*************************96 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (81 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 394 (0.0877897); expected 89.8 (0.02)
Passed bias filter: 124 (0.0276292); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 581.60
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0082 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0094 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0094.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0094/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0094 [L=238]
Description: membrane protein, putative 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (238 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 243 (0.0541444); expected 89.8 (0.02)
Passed bias filter: 51 (0.0113636); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 1798.83
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0094 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0095 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0095.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0095/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0095 [L=944]
Description: secA: preprotein translocase, SecA subunit 5=Equivalog Protein export
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-274 910.1 26.2 2.2e-208 692.2 12.5 2.8 3 TIGR00963 secA: preprotein translocase, SecA subunit
1.7e-255 847.8 25.5 1.7e-255 847.8 25.5 2.0 2 TIGR04397 SecA2_Bac_anthr: accessory Sec system translocase
9.3e-222 736.3 23.1 9.3e-222 736.3 23.1 2.0 2 TIGR03714 secA2: accessory Sec system translocase SecA2
5.7e-162 538.6 11.3 1.1e-155 517.9 6.4 2.2 2 TIGR04221 SecA2_Mycobac: accessory Sec system translocase Se
Domain annotation for each model (and alignments):
>> TIGR00963 secA: preprotein translocase, SecA subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 692.2 12.5 1.9e-211 2.2e-208 1 473 [. 18 488 .. 18 490 .. 0.99
2 ! 232.9 5.7 1.5e-72 1.7e-69 511 786 .. 489 755 .. 488 756 .. 0.95
3 ? -8.6 8.4 4 4.5e+03 632 751 .. 772 892 .. 759 932 .. 0.51
Alignments for each domain:
== domain 1 score: 692.2 bits; conditional E-value: 1.9e-211
TIGR00963 1 vnaleekveklsdeelrkkteelkerlekdeesldellpeafavvreaskRvlglrpfdvqllggivlhkgkiaEmktGEGktLvavlpaylnaLtgk 98
+ ale ++++l de++ kt+e+k+ le d++sld++l e +av+rea++Rvlgl +++vql+ggi+l++g+iaEm+tGEGktL+ ++paylnaL+gk
MMSYN1_0095 18 IIALEPQMRQLKDEDFILKTQEFKQMLE-DGKSLDDILIEVYAVAREAARRVLGLNAYKVQLIGGIILNSGDIAEMRTGEGKTLTGIFPAYLNALSGK 114
6789**********************88.8******************************************************************** PP
TIGR00963 99 gvhvvtvndYLakrdaeevgkvlrflglsvGvilssmskeerkeayacDitYgtnsElGFDyLrDnlalsleekvqrefafaiiDEvDsiLiDEArtP 196
gvh+vtvn+YL+krd+e g+v++ lg+svG++ ss++k+e++eay++DitY+tn ElGFDyLrDn++ +++ kvqr+++++iiDE Ds+LiDEArtP
MMSYN1_0095 115 GVHIVTVNEYLSKRDSEINGQVFDLLGISVGLNGSSLTKTEKREAYNKDITYTTNAELGFDYLRDNMVSDYSLKVQRKLNYCIIDEADSVLIDEARTP 212
************************************************************************************************** PP
TIGR00963 197 LiisgpaeketelYlkakkvaealkekdvdyevdekkravlltekGlkkaekllkvdnlydlenkalvhyilnalkAkelfekdvdYivrdgevvivD 294
Liisg + ++ +lY +a+++a +lk +++d ++d ++++v+l+e+G+kka+++++++nl+++en++++h i+nalkA+ f++ v+Y vrd+e++++D
MMSYN1_0095 213 LIISGGTSTRINLYKAANNFALTLK-EHDDLDIDLESKQVYLNEQGMKKANEFFSLKNLFAIENTEIFHLIMNALKAQFAFKEGVEYTVRDNEILLID 309
************************7.8899******************************************************************** PP
TIGR00963 295 eftGRilegRryseGlhqAieakEkveiqkesqtlAtityqnfFrlyeklagmtGtAkteeeEfkkiYklevvevPtnkpvlRkdesDlvykteeekf 392
+ftGRi++gR+ys+Gl+qA++akE+v+i++e+ tlAtityqnf+rly+k+agmtGtAkteeeEf kiY+ +v++ Ptnkpv+Rkde+Dl + t+++
MMSYN1_0095 310 QFTGRIMHGRSYSDGLQQALQAKENVDIEEETVTLATITYQNFYRLYSKIAGMTGTAKTEEEEFIKIYNTRVIQTPTNKPVIRKDEPDLTFGTKNAAL 407
************************************************************************************************** PP
TIGR00963 393 kAvveeiaeahkkgrPvLvGttsveksEllskllkekrikhevLnaknherEaeiiaqaGkkgavtiatnmAGRGtDikLg 473
k +ve++ eah+kg P+L+Gttsve+sE ++++lk++++k+e +naknh+rEaei+++aG+ ga+t+atnmAGRGtDikL
MMSYN1_0095 408 KKLVEDVLEAHEKGAPILIGTTSVESSEQIARYLKKANLKFETINAKNHDREAEIVSKAGEIGAITLATNMAGRGTDIKLA 488
*******************************************************************************95 PP
== domain 2 score: 232.9 bits; conditional E-value: 1.5e-72
TIGR00963 511 eevvelGGLyviGterhesrRiDnqLRGRsgRqGDpgssrFflsleDellrlFgsdrlekllkklrleedepieskllskalesaqkrvEernfdiRk 608
+ v+elGGL v G er+e+rRiDnqLRGRsgRqGDpg srF++s++D+l+ +F++++ ++ +k+l+ i+sk++++a+ +aqk++E+ nfd Rk
MMSYN1_0095 489 KGVAELGGLRVFGVERNEARRIDNQLRGRSGRQGDPGLSRFYISMDDDLMMRFTAPKTRQRFKALGD---DYIKSKMFTRAVTNAQKKLEGMNFDQRK 583
6799******************************************************998888764...56************************** PP
TIGR00963 609 qlleYDdvlnkqReviYaeRkevleaedlkelilealekvleeivdalikkekkeeelklekleeklkklllleeeleeeelenaealeeeelkelll 706
++l+YD++l++qRe+iYa+R+++lea+dl+ +i++++ ++ e+++++ + + e++++ ++l ++++ +l+ +++++ ++++n+ e+ +l+ ++
MMSYN1_0095 584 NVLDYDNILAQQREIIYAQRDDILEANDLSVVIEKMQITAAYELIEKHSTLVHGEKTINKKELLDAIDGTLVPKNKFRVDDFNNK---EKMDLAVEIA 678
************************************************999999999*********************9999884...6789999999 PP
TIGR00963 707 ekvkaayeekeeeleseapgllrelersvllqsiDekwkehlekmdllresvglRsygqkdPlieykkegfelFeellek 786
e + + y+++ + + + ++ +er+++l s D+ w++hl+ +l+++++l +y+q++Pl y +++ +lF+++ +
MMSYN1_0095 679 EGMMQLYKARISDIPDD---VIIGMERKIILDSFDKYWTKHLDIAGKLKSGIYLQQYAQNNPLAIYVEQATDLFNKMKIN 755
99999999988888855...5999****************************************************9766 PP
== domain 3 score: -8.6 bits; conditional E-value: 4
TIGR00963 632 leaedlkelilealekvleeivdal.ikkekkeeelklekleeklkklll.leeeleeeelenaealeeeelkelllekvkaayeekeeeleseapgl 727
+e+e+ +e +e+++k +eei+ ++ + ++ +++ + + +l+++++ ++++l++ ++++ + + l+ ++++ ++ ++ ++ + + ++l
MMSYN1_0095 772 VEDEEQREERIEVTDKDIEEILFETgLQPSDINNKAINQRFD-ELEEEFKdDKQKLRRLRIQRDV-MLGLVLELERRAEMIISPQNDQQAITQLIKEL 867
455554444444444444444433314444444443333333.3344343255555555554432.33333333334444444455555555555556 PP
TIGR00963 728 lrele.rsvllqsiDekwkehlekm 751
+++ s+ + +i +++++ +e++
MMSYN1_0095 868 QNDIDiASITIDQIHQNFNNMVEQI 892
6665413445666666665544444 PP
>> TIGR04397 SecA2_Bac_anthr: accessory Sec system translocase SecA2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 847.8 25.5 1.5e-258 1.7e-255 8 773 .. 3 767 .. 1 768 [. 0.96
2 ? -9.5 11.9 4 4.5e+03 561 707 .. 779 928 .. 769 933 .. 0.60
Alignments for each domain:
== domain 1 score: 847.8 bits; conditional E-value: 1.5e-258
TIGR04397 8 eserklkkyeklvekineleekleklsdeelrektaefkerlekGktvddikaeafavvreaakrvlGlrhydvqliGGlvlleGniaematGeGktl 105
+++r lkk+ k+++ki +le+++++l de++ kt+efk++le+Gk++ddi e +av reaa+rvlGl y vqliGG++l+ G+iaem tGeGktl
MMSYN1_0095 3 SDKRLLKKFGKIADKIIALEPQMRQLKDEDFILKTQEFKQMLEDGKSLDDILIEVYAVAREAARRVLGLNAYKVQLIGGIILNSGDIAEMRTGEGKTL 100
57999********************************************************************************************* PP
TIGR04397 106 vaslPsylraleGkGvhvitvndylakrdreliGqiheflGltvGlnvpqleaeekkeayeadityGvGtefGfdylrdnlvyelsdkvqrPyhyaii 203
+P+yl+al GkGvh++tvn+yl+krd e+ Gq++++lG+ vGln ++l+ ek+eay+ dity + +e+Gfdylrdn+v + s kvqr + y ii
MMSYN1_0095 101 TGIFPAYLNALSGKGVHIVTVNEYLSKRDSEINGQVFDLLGISVGLNGSSLTKTEKREAYNKDITYTTNAELGFDYLRDNMVSDYSLKVQRKLNYCII 198
************************************************************************************************** PP
TIGR04397 204 deidsvlideaktPliiagkkkssselkkiaakvvksfeeeedyeydeetkavslteeGiekiekafgidnlydlehqvlyhyliqalrarvlfkrdv 301
de dsvlidea+tPlii+g ++++ +l+k a++ + +++e++d ++d e+k+v l e+G++k ++ f+++nl+ +e ++h ++ al+a++ fk v
MMSYN1_0095 199 DEADSVLIDEARTPLIISGGTSTRINLYKAANNFALTLKEHDDLDIDLESKQVYLNEQGMKKANEFFSLKNLFAIENTEIFHLIMNALKAQFAFKEGV 296
************************************************************************************************** PP
TIGR04397 302 dyivkdgkielvdlftGrvleGrslsdGlhqaieakeGleiteenktqasitiqnyfrmypklsGmtGtakteekelrkvygldvvqiPtnrpkirvd 399
+y v+d++i l+d ftGr+++Grs+sdGl qa++ake ++i ee t a+it qn++r+y k++GmtGtaktee+e+ k+y+ +v+q Ptn+p ir+d
MMSYN1_0095 297 EYTVRDNEILLIDQFTGRIMHGRSYSDGLQQALQAKENVDIEEETVTLATITYQNFYRLYSKIAGMTGTAKTEEEEFIKIYNTRVIQTPTNKPVIRKD 394
************************************************************************************************** PP
TIGR04397 400 kedlvfltkeakykavaeevkkrhetGrPvliGttsilqseevakyldkekieyellnaktveqeaelialaGqkgrvtiatnmaGrGtdillgegvk 497
++dl f tk+a k+++e+v + he+G P+liGtts+ se++a+yl+k+++++e +nak ++eae++++aG g +t+atnmaGrGtdi l +gv+
MMSYN1_0095 395 EPDLTFGTKNAALKKLVEDVLEAHEKGAPILIGTTSVESSEQIARYLKKANLKFETINAKNHDREAEIVSKAGEIGAITLATNMAGRGTDIKLAKGVA 492
************************************************************************************************** PP
TIGR04397 498 elGGlyviGterhesrridnqlkGraGrqGdpGssqfiisledellrryakeeleklkkklktdetGeilskdvkelvdkvqkivegaeysireynlk 595
elGGl v G er+e+rridnql+Gr+GrqGdpG s+f+is++d+l+ r+++ ++ ++++k+ i+sk + v ++qk +eg++++ r+ l
MMSYN1_0095 493 ELGGLRVFGVERNEARRIDNQLRGRSGRQGDPGLSRFYISMDDDLMMRFTAPKT---RQRFKALGDDYIKSKMFTRAVTNAQKKLEGMNFDQRKNVLD 587
*************************************************99876...56677777779****************************** PP
TIGR04397 596 lddvineqreviyklrdkvleeedaleevlkmieeaveklidkyvaeellpeewdleelkeelrkillveavt..ldkevkdkeelkaavkdel.eel 690
d+++ +qre+iy rd +le++d+ ++ km +a +li+k+ + + + +el ++++ l+ +++ d + k+k +l+ ++++ + + +
MMSYN1_0095 588 YDNILAQQREIIYAQRDDILEANDLSVVIEKMQITAAYELIEKHSTLVHGEKTINKKELLDAIDGTLVPKNKFrvDDFNNKEKMDLAVEIAEGMmQLY 685
**********************9988888888888889999999988888888899999999997766544442267777888899988888651556 PP
TIGR04397 691 ieelekleeneelklelkevllsvidakwvkhldalnklkeGiglrsyqqedPvrlyekeglelfealykeiekeiatelakl 773
+++++++ ++ + + ++++l d++w+khld klk Gi l++y q++P+ +y +++ +lf+++ +i++e++ +la++
MMSYN1_0095 686 KARISDIPDDV-IIGMERKIILDSFDKYWTKHLDIAGKLKSGIYLQQYAQNNPLAIYVEQATDLFNKMKINIANEVVENLANV 767
77777777655.55566899********************************************************9998875 PP
== domain 2 score: -9.5 bits; conditional E-value: 4
TIGR04397 561 detGeilskdvkelvdkvqkivegaeysireynlklddvineqreviyklrdkvleeedaleevlkmie...eaveklidkyvaeellpe.ewdleel 654
+e+ e+++kd++e++ ++ ++++ + n ++d++ +e ++ klr ++++ +l vl+ + +++ + d+ + +l+ e + d++
MMSYN1_0095 779 EERIEVTDKDIEEILFETGLQ--PSDINNKAINQRFDELEEEFKDDKQKLRRLRIQRDVMLGLVLELERraeMIISPQNDQQAITQLIKElQNDIDIA 874
555566666666666544433..333444455566666666666666677776677777766665543300033444444445444444424455555 PP
TIGR04397 655 keelrkillveavtldkevkdkeelkaav..kdeleelieelekleeneelklel 707
+ ++++i ++ ++ ++++d e+lk+ v kd l +l++++++++e+e+++ +
MMSYN1_0095 875 SITIDQIHQ-NFNNMVEQINDPEKLKHLViaKDVLLQLVARMDDIKEQEKQTRKK 928
556666665.677788889999999988744577889999999999999887665 PP
>> TIGR03714 secA2: accessory Sec system translocase SecA2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 736.3 23.1 8.3e-225 9.3e-222 3 761 .. 5 756 .. 3 757 .. 0.92
2 ? -7.5 10.4 4 4.5e+03 585 701 .. 813 930 .. 763 939 .. 0.57
Alignments for each domain:
== domain 1 score: 736.3 bits; conditional E-value: 8.3e-225
TIGR03714 3 klrlkklrkilkkinalkekmaslsdeeLkaktaefkkrLkegesLddilveayavvreadkrvLGlfPydvqvlGaivlheGniaemktGeGktLta 100
k lkk+ ki ki al+ +m++l de+ kt+efk+ L++g+sLddil+e yav rea +rvLGl y vq++G+i+l +G+iaem+tGeGktLt
MMSYN1_0095 5 KRLLKKFGKIADKIIALEPQMRQLKDEDFILKTQEFKQMLEDGKSLDDILIEVYAVAREAARRVLGLNAYKVQLIGGIILNSGDIAEMRTGEGKTLTG 102
5569********************************************************************************************** PP
TIGR03714 101 tmplYLnalegkgallvttndYLakrDaeelgkvYrflGltvsvgvvddedeeldakekrkiYesDivYttnsaLgfDYLidnLadnkeekflrklny 198
+p YLnal+gkg+ +vt+n+YL+krD e g+v+ lG++v+++ + l+++ekr+ Y++Di+Yttn++LgfDYL dn++++ + k rklny
MMSYN1_0095 103 IFPAYLNALSGKGVHIVTVNEYLSKRDSEINGQVFDLLGISVGLNGSS-----LTKTEKREAYNKDITYTTNAELGFDYLRDNMVSDYSLKVQRKLNY 195
******************************************998777.....8999***************************************** PP
TIGR03714 199 vivDevDsvlLDaaqtPlvisgaPrvqsnlykivdelvetlkededykfkkekkevwltekGiekaekylkieelyseeaaelvrhlnlalrakklfk 296
i+De+Dsvl+D+a+tPl+isg + nlyk ++++ tlke++d ++ e+k+v+l e+G++ka++++++++l+ e++e+ ++ al+a+ fk
MMSYN1_0095 196 CIIDEADSVLIDEARTPLIISGGTSTRINLYKAANNFALTLKEHDDLDIDLESKQVYLNEQGMKKANEFFSLKNLFAIENTEIFHLIMNALKAQFAFK 293
************************************************************************************************** PP
TIGR03714 297 kdkDYvvkdgevvLlDretGrllegtklqsGlhqaieakekvelskesramasityqnlfklfeklsGmtgtgkvaekeflevYslsvvkiPtnkpik 394
++++Y v+d+e+ L+D+ tGr+++g + Gl qa+ ake+v++ +e+ ++a+ityqn+++l++k++Gmtgt+k+ e+ef+++Y+ v++ Ptnkp++
MMSYN1_0095 294 EGVEYTVRDNEILLIDQFTGRIMHGRSYSDGLQQALQAKENVDIEEETVTLATITYQNFYRLYSKIAGMTGTAKTEEEEFIKIYNTRVIQTPTNKPVI 391
************************************************************************************************** PP
TIGR03714 395 riDkadkvyatldekleatleevkelhekgqPvLlitgsvelselysklLlkegiphnvLnaqnvakeaqiiaeaGqkgavtvatslaGrGtDikLgk 492
r+D++d + t + l+ +e+v e+hekg P+L+ t sve se +++ L k ++ +++na+n +ea i+++aG++ga+t+at++aGrGtDikL+k
MMSYN1_0095 392 RKDEPDLTFGTKNAALKKLVEDVLEAHEKGAPILIGTTSVESSEQIARYLKKANLKFETINAKNHDREAEIVSKAGEIGAITLATNMAGRGTDIKLAK 489
************************************************************************************************** PP
TIGR03714 493 gvkelGGLavigtermensrvdlqlrGrsGrqGDpGlsqffvsleDdlvkknspsklkkykkkkekkeskekekallkrrvrkivekaqraseekaes 590
gv+elGGL v g er e +r+d+qlrGrsGrqGDpGls+f++s++Ddl+++++ k ++ +k ++ ++++ + + v++aq++ e +
MMSYN1_0095 490 GVAELGGLRVFGVERNEARRIDNQLRGRSGRQGDPGLSRFYISMDDDLMMRFTAPKTRQRFKALGDDY-------IKSKMFTRAVTNAQKKLEGMNFD 580
******************************************************99999998876655.......457888999************** PP
TIGR03714 591 areqtiefeeslkiqrekvYeernklleaedkleeevkkiiedvlekvve.......ekkleekedlvrfilenlsyklkevpkeldlkskeeikeyl 681
+r++ ++++++l qre++Y++r+ +lea+d l+ ++k+ ++ + +e +k+ +k++l++ i l k k +++++ k+k +++
MMSYN1_0095 581 QRKNVLDYDNILAQQREIIYAQRDDILEAND-LSVVIEKMQITAAYELIEkhstlvhGEKTINKKELLDAIDGTLVPKNKFRVDDFNNKEK---MDLA 674
*****************************99.55555554433333333311001114444555555566666655544444444433333...3445 PP
TIGR03714 682 keiaekeleekkkllks..kkkaeefvrlsilkaiDeaWieqvDklqqlktvvtqrqagqrnaiveyekealesyekmkkei 761
+eiae ++ k+ +++ ++ ++r+ il + D+ W ++ D +lk + +q +q n++ y ++a + ++kmk +i
MMSYN1_0095 675 VEIAEGMMQLYKARISDipDDVIIGMERKIILDSFDKYWTKHLDIAGKLKSGIYLQQYAQNNPLAIYVEQATDLFNKMKINI 756
55555555544444443224577889*****************************************************987 PP
== domain 2 score: -7.5 bits; conditional E-value: 4
TIGR03714 585 eekaesareqtiefeeslkiqrekvY......eernklleaedkleeevkkiiedvlekvveekkleekedlvrfilenlsyklkevpkeldlkskee 676
+e e+ ++ ++ + l+iqr+ + e+r +++ + ++ ++ ++++i++ +++++ + ++ i +n++ ++++ + +lk+
MMSYN1_0095 813 DELEEEFKDDKQKL-RRLRIQRDVMLglvlelERRAEMIISPQNDQQAITQLIKEL------QNDIDIASITIDQIHQNFNNMVEQINDPEKLKHLVI 903
33333333333333.34666666654111111455555555555555555555544......344555666778889999999999999999988888 PP
TIGR03714 677 ikeylkeiaeke..leekkkllkskkk 701
k+ l +++ + ++e++k+ ++kkk
MMSYN1_0095 904 AKDVLLQLVARMddIKEQEKQTRKKKK 930
888888887654114444444444444 PP
>> TIGR04221 SecA2_Mycobac: accessory Sec system translocase SecA2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 517.9 6.4 9.5e-159 1.1e-155 20 639 .. 11 629 .. 2 644 .. 0.92
2 ! 23.2 0.2 3.7e-09 4.1e-06 635 725 .. 686 778 .. 665 785 .. 0.83
Alignments for each domain:
== domain 1 score: 517.9 bits; conditional E-value: 9.5e-159
TIGR04221 20 skavvkaadeaekklsdlddeelteaakdlvl...sgev.eda.aellailreaaertlglrPfdvqllaalrllaGdvvematGeGktlagaiaaaG 112
++ +++ + e ++ +l+de++ ++++ ++ g++ +d+ e+ a++reaa+r lgl+ ++vql + + l +Gd++em tGeGktl+g a+
MMSYN1_0095 11 FGKIADKIIALEPQMRQLKDEDFILKTQEFKQmleDGKSlDDIlIEVYAVAREAARRVLGLNAYKVQLIGGIILNSGDIAEMRTGEGKTLTGIFPAYL 108
45555566666777888888888777777776666555414543699*************************************************** PP
TIGR04221 113 falaGkrvhvvtvndylarrdaewmkPlldllGltvgavtedstaderreayardviyasvneiGfdvlrdqlvtdradlvqaaadvalideadsvlv 210
al Gk vh+vtvn+yl++rd+e + ++dllG++vg ++t e+reay++d++y++ e+Gfd+lrd++v+d + +vq + + +ideadsvl+
MMSYN1_0095 109 NALSGKGVHIVTVNEYLSKRDSEINGQVFDLLGISVGLNGSSLTKTEKREAYNKDITYTTNAELGFDYLRDNMVSDYSLKVQRKLNYCIIDEADSVLI 206
************************************************************************************************** PP
TIGR04221 211 dealvPlvlaGaepgea.PageiidlvkrlkedkhyavdedgrnvalteeGaravekelGiddlydeekvgttlvevnvalhahallqrdvhyivrdg 307
dea+ Pl+++G + + + ++ lke+ + ++d ++++v l e+G+++ ++ + ++l+ e+ +++ + al a+ ++ v+y vrd+
MMSYN1_0095 207 DEARTPLIISGGTSTRInLYKAANNFALTLKEHDDLDIDLESKQVYLNEQGMKKANEFFSLKNLFAIENT-EIFHLIMNALKAQFAFKEGVEYTVRDN 303
*********9877666515666778899**************************************9988.88999999******************* PP
TIGR04221 308 kvelidasrGrvaelqrwPdGlqaaveakeGlevtegGevldtitvqalikryptvcGmtgtalaageqlrqfydlevsvidpnkPliredeadrvyv 405
++ lid+ Gr+ + + + dGlq a++ake +++ e+ l tit q++ ++y+++ Gmtgta + e + + y+ +v + nkP+ir+de+d +
MMSYN1_0095 304 EILLIDQFTGRIMHGRSYSDGLQQALQAKENVDIEEETVTLATITYQNFYRLYSKIAGMTGTAKTEEEEFIKIYNTRVIQTPTNKPVIRKDEPDLTFG 401
************************************************************************************************** PP
TIGR04221 406 taaekedaiveeiaevhktGqPvlvGtqdvaeseelaealleagvdvvvlnakndeeeaaviaeaGklGavtvstqmaGrGtdiklGGsdeadhdeva 503
t+++ + +ve++ e h++G P+l+Gt v se++a l++a+++ +nakn++ ea++++ aG++Ga+t++t maGrGtdikl va
MMSYN1_0095 402 TKNAALKKLVEDVLEAHEKGAPILIGTTSVESSEQIARYLKKANLKFETINAKNHDREAEIVSKAGEIGAITLATNMAGRGTDIKLA-------KGVA 492
**************************************************************************************6.......46** PP
TIGR04221 504 elGGlavvGtgrhrterldnqlrGraGrqGdPGsslffvsleddvvaaggageklkaepee.dGrieskrvqslvdhaqrvaeGqlleihantwkynk 600
elGGl v G+ r +++r+dnqlrGr+GrqGdPG+s f++s++dd++++ +a ++ + + d i+sk + +v aq+ eG +++ +n y++
MMSYN1_0095 493 ELGGLRVFGVERNEARRIDNQLRGRSGRQGDPGLSRFYISMDDDLMMRFTAPKTRQRFKALgDDYIKSKMFTRAVTNAQKKLEGMNFDQRKNVLDYDN 590
**********************************************9998776655444435************************************ PP
TIGR04221 601 liadqrkiiaerreklldtdaareelseraaeraaelke 639
++a+qr+ii +r+ +l+++ + + + a el e
MMSYN1_0095 591 ILAQQREIIYAQRDDILEANDLSVVIEKMQITAAYELIE 629
*****************9988777776666666666654 PP
== domain 2 score: 23.2 bits; conditional E-value: 3.7e-09
TIGR04221 635 aelkeevsedalekaareimlyhldrewaehlallddvresihlralaredPldefhriavdafkelaeeavekavetfeev..eidadeael 725
+ ++++d+++ + r+i+l +d+ w++hl++ +++ +i+l+ a+++Pl + a d f+++ ++ ++ ve + +v ++++de +
MMSYN1_0095 686 KARISDIPDDVIIGMERKIILDSFDKYWTKHLDIAGKLKSGIYLQQYAQNNPLAIYVEQATDLFNKMKINIANEVVENLANVilRVVEDEEQR 778
33335699************************************************************9999999999988722345555544 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (944 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 422 (0.0940285); expected 89.8 (0.02)
Passed bias filter: 84 (0.0187166); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.33u 0.40s 00:00:00.73 Elapsed: 00:00:00.61
# Mc/sec: 2222.34
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0095 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0097 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0097.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0097/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0097 [L=303]
Description: 5'-3' exonuclease, N-terminal resolvase-like domain protein 2=Generic DNA metabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.1e-67 224.9 4.3 6.1e-67 224.7 4.3 1.0 1 TIGR00593 pola: DNA polymerase I
------ inclusion threshold ------
0.03 12.4 1.8 0.059 11.4 0.3 2.3 3 TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
Domain annotation for each model (and alignments):
>> TIGR00593 pola: DNA polymerase I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 224.7 4.3 2.7e-70 6.1e-67 2 285 .. 10 293 .. 9 302 .. 0.94
Alignments for each domain:
== domain 1 score: 224.7 bits; conditional E-value: 2.7e-70
TIGR00593 2 lLiDghslafRayfalkkepL..knskgeptnavyGfvkmllkllkeekpeyvvvafdsekktfRheayeeYKanRketpeelaeqlplikellealg 97
lLiDg++l+++ y+ k+++ kn+ g+ +na+y fv+ +lk++++++++ v+vafd ++ R+e y eYKa+Rk tp +l +ql++ +++l+ +
MMSYN1_0097 10 LLIDGYHLLHKGYYGTLKRTIvsKNKDGIVINAIYSFVANILKFVQSDRYHSVIVAFDFDENCWRKELYSEYKAKRKPTPIDLVPQLQIARDFLTSAN 107
8*************8877554237899*********************************************************************** PP
TIGR00593 98 itilevegyEADDviatLakkaekegyevviisgDkDllQlvsdnvkvlkl.kgktelteltaeavvekygvtpeqlvdlkaLvGDkSDnipGvkgiG 194
i +e+ +yE DDvi+++ + a+k gy+v i+++DkD++Qlv+++ +++++ ++k++++ +++++v e + +p+q++d+ka+ GD+SDni+Gvk i
MMSYN1_0097 108 ISWYEKYNYEGDDVIGSICRIANKLGYDVCILTNDKDIYQLVNNKTSIITNiSKKEKTKIIKPQQVYEHFLCQPNQVADIKAILGDQSDNIKGVKYIK 205
************************************************99988999999*************************************** PP
TIGR00593 195 eKtAakLLkefgslekiyenlekikseklkekLkeekedallskelatietdvplevdledlrlkeedreklvelleelefkslkkklekl 285
K A +L+++++ +e+i+ +++++++ lk+ + e+k+ ++ +k++++i t+v+l + ++ l ++l+e e+ +++k +
MMSYN1_0097 206 RKQAENLINKYENVENILAHINELNE-PLKTIISENKQLIIDNKKITKILTNVKLGRINF--KPTKITYYGLIRFLKEQEMYAFIKPIRRY 293
*************************9.9*************************9975544..78888888999999999999998887765 PP
>> TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.6 0.0 0.56 1.3e+03 3 9 .. 64 70 .. 30 91 .. 0.57
2 ? 11.4 0.3 2.6e-05 0.059 33 77 .. 125 166 .. 107 211 .. 0.78
3 ? -1.4 0.0 0.25 5.5e+02 21 41 .. 210 230 .. 198 261 .. 0.55
Alignments for each domain:
== domain 1 score: -2.6 bits; conditional E-value: 0.56
TIGR01662 3 vvlDlDg 9
v +D+D
MMSYN1_0097 64 VAFDFDE 70
3444443 PP
== domain 2 score: 11.4 bits; conditional E-value: 2.6e-05
TIGR01662 33 alaelkkeGykvvivtNqsgigrgkesveevsekveslleelgvp 77
+ + ++k Gy+v i+tN ++i + v++ + ++ +++++++ +
MMSYN1_0097 125 ICRIANKLGYDVCILTNDKDIYQ---LVNNKTSIITNISKKEKTK 166
5677899************6655...5566777777777775554 PP
== domain 3 score: -1.4 bits; conditional E-value: 0.25
TIGR01662 21 edeaelypevidalaelkkeG 41
e+ + +y++v+++la++++
MMSYN1_0097 210 ENLINKYENVENILAHINELN 230
444455555555555555433 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (303 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 399 (0.0889037); expected 89.8 (0.02)
Passed bias filter: 129 (0.0287433); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1977.82
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0097 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0105 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0105.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0105/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0105 [L=71]
Description: xseB 4=Probable DNA metabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-12 44.1 4.1 4.9e-12 43.7 4.1 1.1 1 TIGR01280 xseB: exodeoxyribonuclease VII, small subunit
Domain annotation for each model (and alignments):
>> TIGR01280 xseB: exodeoxyribonuclease VII, small subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.7 4.1 1.1e-15 4.9e-12 1 57 [] 7 63 .. 7 63 .. 0.98
Alignments for each domain:
== domain 1 score: 43.7 bits; conditional E-value: 1.1e-15
TIGR01280 1 sfEealaeLeeIVekLEsgdlsLeeslklyeeGikLlkecqkkLeeaeqkiekllee 57
s++e ++e++e +kL s ++s e++++ +e+ i+ +k +++kL++++++i k++++
MMSYN1_0105 7 SYDELISEIKEDTKKLSSNEISVEQAMEIFEQNIEKIKLAKEKLTQYKGQIYKVMQD 63
8*****************************************************986 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (71 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 536 (0.11943); expected 89.8 (0.02)
Passed bias filter: 176 (0.0392157); expected 89.8 (0.02)
Passed Vit filter: 18 (0.0040107); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 509.80
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0105 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0106 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0106.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0106/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0106 [L=469]
Description: xseA, exodeoxyribonuclease VII, large subunit 5=Equivalog DNA metabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-124 414.4 3.9 2.7e-122 406.6 3.9 2.0 1 TIGR00237 xseA: exodeoxyribonuclease VII, large subunit
Domain annotation for each model (and alignments):
>> TIGR00237 xseA: exodeoxyribonuclease VII, large subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 406.6 3.9 6e-126 2.7e-122 1 389 [] 6 462 .. 6 462 .. 0.98
Alignments for each domain:
== domain 1 score: 406.6 bits; conditional E-value: 6e-126
TIGR00237 1 sVselneyikelleedl.lkevwveGeisnlkrassghlYftLkDekaqisavmfkskakklkf.eleeGmkVlvkgkvsvyekrGeyqliveeiepa 96
+V+elne++k+l+e+++ +k+++v+Ge+snl+ ++sgh+Yf++k+++a+i+++m+k++a k++ +le+Gm++++ g++++y ++G++++ v++i+
MMSYN1_0106 6 TVQELNEALKTLIENKQeFKDIYVQGELSNLTFNKSGHIYFSIKEQDAAINCMMWKTNAYKIQSlNLEDGMQIICYGRLTYYIPTGRVSFEVRDIKIH 103
79**********************************************************965449******************************** PP
TIGR00237 97 glGelaaaleelkekLeaeGlfdeerkkplpklpkrigviTsptgaalrDilkvlkrraplvevvlypalVQGeeaaesiiaaleklnaee.evDvii 193
g+G+l++ +e+ ++Le++G+fd++ kkp+p+++k++g+iT+++gaa+ D++++++rr pl+++ l+pa+VQG++a+++i+++++++n+ + ++Dv+i
MMSYN1_0106 104 GIGDLQKIFEQRYKELEQKGWFDPNLKKPIPEFVKNVGIITADSGAAIYDLIRTIHRRLPLINIFLFPAQVQGDKAEKDIANKIKQANDFKvQLDVLI 201
*****************************************************************************************9856***** PP
TIGR00237 194 vaRGGGsleDLwaFneeevaraiaaskiPvisavGHetDttiaDlvAdlrapTPtaAaelavpdleellerleeleerlkralkrrlererqrleelk 291
v+RGGGs eDLwaFne ev +ai +s+iP+isavGHe D++++D+vAd+ra+TPtaA el+++++ e++++l+++ ++ k+ + ++l+ ++l+++k
MMSYN1_0106 202 VGRGGGSYEDLWAFNELEVLQAIKNSQIPIISAVGHEPDWVLSDYVADIRAATPTAAGELVSKSIIEIKNQLKHYYQNYKTLILNKLDFFDEKLNNYK 299
************************************************************************************************** PP
TIGR00237 292 krlelkspeelleekeqrldeleerlkkalkkk................................................................. 324
k+ ++k ++ ++ k +l++l+ + +k +k+k
MMSYN1_0106 300 KE-QTKYIKNNFSFKYLQLKQLSIDNTKWTKNKinlvidklenykqsinnstlhiinsqnktlknyliadeqkilnylkkqisefnytissfkghinq 396
*9.889999****************99999999***************************************************************** PP
TIGR00237 325 .lekkkqrlealaaklealsplavlkrGYaivekedgkvvrsakqlkegdeleirladgeikaevk 389
l+ ++ ++++l++kl++l+pl+ l+ GY+iv++ + + +rs kq+k +++l++ l+d ++++++k
MMSYN1_0106 397 iLKYEELSFNTLENKLNSLDPLKPLQNGYSIVTNLNHQKIRSYKQVKLNEDLKVILTDSKLTVTIK 462
*************************************************************99985 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (469 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 412 (0.0918004); expected 89.8 (0.02)
Passed bias filter: 88 (0.0196078); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 2928.28
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0106 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0107 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0107.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0107/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0107 [L=132]
Description: nusB: transcription antitermination factor NusB 5=Equivalog Transcription
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-26 91.7 1.4 1.2e-26 91.5 1.4 1.0 1 TIGR01951 nusB: transcription antitermination factor NusB
0.0028 14.8 0.1 0.0028 14.8 0.1 1.2 1 TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransfer
Domain annotation for each model (and alignments):
>> TIGR01951 nusB: transcription antitermination factor NusB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 91.5 1.4 5.3e-30 1.2e-26 3 129 .. 8 132 .] 6 132 .] 0.92
Alignments for each domain:
== domain 1 score: 91.5 bits; conditional E-value: 5.3e-30
TIGR01951 3 rkaRelalqalyqlelagenveeileelleekeleeedreyakelvrgvlenqeeidelieehl.kdwklerLakvdraiLrlavyEllyrkdvpkkv 99
+k R+l++q++y+++l +++++ i +++l++ ++ +++ + +++++++q ++ ++i+ ++ ++wk++r+++v raiL +++yE+ly+ ++pk+v
MMSYN1_0107 8 SKKRKLLIQTFYKYQLLNASIDYIHQDILDDV--QNINNKDVLFEIEQIAKKQTDLINHININVsSSWKWDRIPAVIRAILIVGTYEILYT-NTPKPV 102
689************************98866..5556666666789999999999999999999*************************9.****** PP
TIGR01951 100 ainEavelakkfsdekspkFvNgvLdkvak 129
+inE+v+ +k+ + +kFvN+vLdk++k
MMSYN1_0107 103 TINEMVKYVKEIEPDFDYKFVNAVLDKLVK 132
***************************986 PP
>> TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.8 0.1 1.2e-06 0.0028 69 119 .. 79 129 .. 22 132 .] 0.90
Alignments for each domain:
== domain 1 score: 14.8 bits; conditional E-value: 1.2e-06
TIGR00563 69 prvvrllllvllqllllervParaavdeavelakalkskglkklvngvLRr 119
p v+r +l+v+ + l++ P+ ++e v+ k ++ + k+vn+vL +
MMSYN1_0107 79 PAVIRAILIVGTYEILYTNTPKPVTINEMVKYVKEIEPDFDYKFVNAVLDK 129
6799*9********************************999*******976 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (132 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 336 (0.0748663); expected 89.8 (0.02)
Passed bias filter: 151 (0.0336453); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.18
# Mc/sec: 1053.10
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0107 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0108 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0108.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0108/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0108 [L=370]
Description: lipoprotein, putative 2=Generic Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (370 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 436 (0.097148); expected 89.8 (0.02)
Passed bias filter: 55 (0.0122549); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 2796.50
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0108 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0109 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0109.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0109/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0109 [L=289]
Description: apurinic endonuclease (APN1)? 2=Generic DNA repair
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.7e-82 273.7 3.6 4.6e-82 273.4 3.6 1.0 1 TIGR00587 nfo: apurinic endonuclease (APN1)
Domain annotation for each model (and alignments):
>> TIGR00587 nfo: apurinic endonuclease (APN1)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 273.4 3.6 1e-85 4.6e-82 2 276 .. 5 280 .. 4 283 .. 0.95
Alignments for each domain:
== domain 1 score: 273.4 bits; conditional E-value: 1e-85
TIGR00587 2 llGahvsaagk...llaalkeaveigansfalflksqrkwkrkkleeeeidkflealketklsaskqvlvHasYliNla.spdeeklekavevlldel 95
llG hvs++ + l+ +++ea++++an+f++f++ ++++ r+++++ i++++e ++ +k + k+++vHa+Y+iN+a s d++k + av++l++e+
MMSYN1_0109 5 LLGCHVSMNKQnnyLVGSVNEAISYKANTFMIFTGPPQSTLRTNTNHLYINQMHELMNSYKID-AKDLVVHAPYIINIAnSVDQNKWKFAVDFLIQEI 101
79*****9887789***************************************6666666666.88*************66789999*********** PP
TIGR00587 96 krceklGikllnlhPGsavsqskeeglkklieslnevieetknviivlEtmAGkgneiGrsfeelkaiidkikdkerlgVClDTCHtfaaGydirtee 193
krce++ i l+lhPGs+ + + +++l+++i+ l+ v + + nv+i+lEtm Gkg e+ +++e++k+i+d++k+k+++gVClDTCH+++aGyd+ +
MMSYN1_0109 102 KRCEEIKIPTLVLHPGSHTTGNYKDSLNQIIKALDIVSNYQVNVKIALETMSGKGTEVCSKLEDFKYILDNVKNKDKVGVCLDTCHLHDAGYDL---S 196
*********************************************************************************************7...8 PP
TIGR00587 194 elekvlkefdevvGleylkaiHlNdskaalGskkDrHenigeGliGldafrlllkderlkgiPlvlETP.kkepelykeeiell 276
+++++ +++++ l+ + iHlNdsk+ + s+kDrH+nig G++G+d++ +++ d+ +++i ++lETP +++ yk eie l
MMSYN1_0109 197 KWDEFKEQMKQNFDLNKVLCIHLNDSKNMISSHKDRHANIGYGYVGFDTLVNVVFDKDFSNISKILETPyIDKKPPYKIEIEDL 280
89999999999**********************************************************6678889****9865 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (289 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 203 (0.0452317); expected 89.8 (0.02)
Passed bias filter: 105 (0.0233957); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.19
# Mc/sec: 2184.30
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0109 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0113 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0113.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0113/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0113 [L=414]
Description: glycosyltransferase, group 2 family protein 3=Putative Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-14 52.1 10.6 1.9e-14 51.4 10.5 1.5 1 TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine sy
4.9e-08 30.3 0.0 9.4e-08 29.4 0.0 1.4 1 TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB
6.7e-06 23.2 0.8 0.00022 18.2 0.1 2.1 2 TIGR04242 nodulat_NodC: chitooligosaccharide synthase NodC
0.00084 16.8 0.0 0.00084 16.8 0.0 2.0 2 TIGR04182 glyco_TIGR04182: glycosyltransferase, TIGR04182 fa
0.0031 14.4 0.0 0.0063 13.4 0.0 1.4 1 TIGR03965 mycofact_glyco: mycofactocin system glycosyltransf
0.0043 14.6 0.2 0.044 11.3 0.2 2.3 1 TIGR04283 glyco_like_mftF: transferase 2, rSAM/selenodomain-
Domain annotation for each model (and alignments):
>> TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.4 10.5 2.6e-17 1.9e-14 32 322 .. 7 314 .. 1 392 [. 0.73
Alignments for each domain:
== domain 1 score: 51.4 bits; conditional E-value: 2.6e-17
TIGR03937 32 klekkekleleevpkvsllvpcynegenveetisallklkypn.leviainDGskDdtaeildklakkedrlrvihleenqGkaaalneglka..... 123
+++k k + ++ + ++++p++ne+ v + i+++ ++ky+ +++ ++ D +D+ + ++k l+ h + +G a+++g ++
MMSYN1_0113 7 NKKKLAKHKPKKNRSFAIVIPAHNESMVVGKLIDSIKAQKYDGvIDIYLVADNCTDNRKTYNVGIEKGITVLERFHS-TLKGGNFAIRHGWRYirdnn 103
3444555666777899*************************96379***********99999999999998998888.78899999999987511111 PP
TIGR03937 124 ..akseylvciDgDalldekalkylveelkenpkvgavtGnPrirnrs.tllGkiqvgefssiiGlikraqrvlGkiftvsGvvalfrksaleevGyW 218
k+++ ++ D+D llde+ ++ + +++ +++ vt +n + + ++f +i + + l + v G ++++e+ W
MMSYN1_0113 104 llDKYDCFCSFDADNLLDENWVYEVNKTFDFYNDIEVVTTYRNSKNYAdNWISSACSIQFLKESDIINKGRATLNHSSYVNGTGFCITRKIFEQTNWW 201
1256788899***********9999999*9999999999877777654245555555555555566677777777888888988888999******** PP
TIGR03937 219 stdmiteDidvsWklqlaeyeikyePralcwvLmPetlkGlykqrlrWaqGGaevllkelkkllk......lkkrrlwp...llleylvsviWaysll 307
+ + + Di+ + l l++ + y P+a + P +k +kqr+rW+ G ++v + ++++k ++k++lw+ +++ +++++ +++
MMSYN1_0113 202 DFNSLSHDIEFTQWLMLNKIKTGYAPNACFYDEQPIDFKNSWKQRMRWCVGFKQVWKIYRSEMIKnmftfkINKIKLWVnftMIFPAVITLLINLLFW 299
************99**************************************9996544444433111111556666642224444444443333333 PP
TIGR03937 308 lllilllikvlvlde 322
l++ l+i+ +++++
MMSYN1_0113 300 LITFGLIISNYIVNY 314
333333333322222 PP
>> TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.4 0.0 1.3e-10 9.4e-08 40 90 .. 16 66 .. 3 96 .. 0.82
Alignments for each domain:
== domain 1 score: 29.4 bits; conditional E-value: 1.3e-10
TIGR03469 40 leawPevvavvPardeaevigeaveslleqdYpGklkvilvDDeseDgtae 90
++ + ++v+Pa +e+ v+g+ ++s+ +q+Y+G + + lv D+ +D +
MMSYN1_0113 16 PKKNRSFAIVIPAHNESMVVGKLIDSIKAQKYDGVIDIYLVADNCTDNRKT 66
344557899*************************************97655 PP
>> TIGR04242 nodulat_NodC: chitooligosaccharide synthase NodC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.2 0.1 3e-07 0.00022 43 110 .. 15 83 .. 2 164 .. 0.69
2 ! 3.8 0.1 0.0072 5.4 246 282 .. 216 251 .. 196 359 .. 0.65
Alignments for each domain:
== domain 1 score: 18.2 bits; conditional E-value: 3e-07
TIGR04242 43 esellpsvdvivpcfnedpstlseclasiaeqdyaGklkvyvvddG.senrdalaa.vhdayasdprfsf 110
+ ++ s +++p++ne ++++ + + si +q+y G + +y+v d ++nr++ + + + + +rf+
MMSYN1_0113 15 KPKKNRSFAIVIPAHNE-SMVVGKLIDSIKAQKYDGVIDIYLVADNcTDNRKTYNVgIEKGITVLERFHS 83
33456678899***998.578899*****************99665167887665413344555566655 PP
== domain 2 score: 3.8 bits; conditional E-value: 0.0072
TIGR04242 246 lmlkaGfrteyvpdaiaatvvpdklkpylrqqlrwar 282
lml ++t+y p+a+ p +k +q++rw
MMSYN1_0113 216 LML-NKIKTGYAPNACFYDEQPIDFKNSWKQRMRWCV 251
455.5699***************************74 PP
>> TIGR04182 glyco_TIGR04182: glycosyltransferase, TIGR04182 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.8 0.0 1.1e-06 0.00084 3 95 .. 23 121 .. 21 126 .. 0.77
2 ? -3.4 4.1 1.6 1.2e+03 221 284 .. 294 360 .. 281 368 .. 0.69
Alignments for each domain:
== domain 1 score: 16.8 bits; conditional E-value: 1.1e-06
TIGR04182 3 cvliPtlneaatigevieefkel...GyedilvidGnstdd..tqeiakeaGarvvaq...sGkGkGqavreavelidkpyvllldgdgtylpedaea 92
+++iP+ ne+ +g++i+++k++ G+ di ++ n td+ t ++ e+G v+++ + kG a+r++ ++i ++ lld + + da++
MMSYN1_0113 23 AIVIPAHNESMVVGKLIDSIKAQkydGVIDIYLVADNCTDNrkTYNVGIEKGITVLERfhsTLKGGNFAIRHGWRYIRDNN--LLDKYDCFCSFDADN 118
69****************9988722256688899999999644788999******97632245666679999999998876..457777777777777 PP
TIGR04182 93 lle 95
ll+
MMSYN1_0113 119 LLD 121
765 PP
== domain 2 score: -3.4 bits; conditional E-value: 1.6
TIGR04182 221 nnPlfyfgilGaill..laGvlvgvyvvveWlk.giehellailtalliivGvqlllfGllsdlila 284
n lf++ +G+i++ ++ l + v++e + + +++ t+ ++i+G+ ++ + l + +i+a
MMSYN1_0113 294 INLLFWLITFGLIISnyIVNYLNSSLVIIEQANnYLRDLIIYCTTTPIVIFGIIFINYLLWGFIIVA 360
5678888888887652256677778888888874578888888888888999866555444445554 PP
>> TIGR03965 mycofact_glyco: mycofactocin system glycosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.4 0.0 8.5e-06 0.0063 71 155 .. 16 101 .. 7 135 .. 0.78
Alignments for each domain:
== domain 1 score: 13.4 bits; conditional E-value: 8.5e-06
TIGR03965 71 ds.ldsvtvVvPvrdrpaglarllaalealdyprdrlevivVDDgSedpvetaaaraaeltvrvi.R.hdrsqGpaaaRNaGlraart 155
++ +s ++V+P ++ + +l+++++a++y +++ +V D +d+ +t ++ + e ++v+ R h + +G a +G+r r
MMSYN1_0113 16 PKkNRSFAIVIPAHNESMVVGKLIDSIKAQKYDGV-IDIYLVADNCTDNRKTYNV-GIEKGITVLeRfHSTLKGGNFAIRHGWRYIRD 101
333789*********************99999755.9***********9999966.66777777733366667777777788887665 PP
>> TIGR04283 glyco_like_mftF: transferase 2, rSAM/selenodomain-associated
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.3 0.2 5.9e-05 0.044 2 51 .. 23 75 .. 22 229 .. 0.73
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 5.9e-05
TIGR04283 2 SiiiPvlnEaetleelladlqalreeal.Evivvdggssdk..tveiakslga 51
+i+iP++nE+ + +l+++++a++ + + ++ +v + +d+ t ++ + g+
MMSYN1_0113 23 AIVIPAHNESMVVGKLIDSIKAQKYDGViDIYLVADNCTDNrkTYNVGIEKGI 75
79*********************999888999777766664115555444555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (414 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 270 (0.0601604); expected 89.8 (0.02)
Passed bias filter: 98 (0.021836); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 2584.88
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0113 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0114 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0114.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0114/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0114 [L=306]
Description: glycosyltransferase, group 2 family protein 3=Putative Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.3e-10 37.9 0.0 8.6e-10 36.5 0.0 1.7 1 TIGR04283 glyco_like_mftF: transferase 2, rSAM/selenodomain-
4.2e-10 37.1 1.1 1.2e-09 35.6 1.4 1.6 2 TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine sy
4.7e-09 33.5 6.6 6e-09 33.1 5.9 1.4 1 TIGR03111 glyc2_xrt_Gpos1: putative glycosyltransferase, exo
6.4e-06 23.3 0.2 9e-06 22.8 0.2 1.2 1 TIGR04242 nodulat_NodC: chitooligosaccharide synthase NodC
7.7e-06 23.0 0.0 1e-05 22.5 0.0 1.2 1 TIGR03965 mycofact_glyco: mycofactocin system glycosyltransf
1.2e-05 22.5 0.0 2e-05 21.8 0.0 1.3 1 TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB
5.2e-05 21.0 2.8 0.0001 20.1 2.8 1.5 1 TIGR04440 glyco_TIGR04440: glycosyltransferase domain
0.00011 19.7 0.0 0.00017 19.0 0.0 1.3 1 TIGR04182 glyco_TIGR04182: glycosyltransferase, TIGR04182 fa
Domain annotation for each model (and alignments):
>> TIGR04283 glyco_like_mftF: transferase 2, rSAM/selenodomain-associated
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.5 0.0 1.5e-12 8.6e-10 2 150 .. 8 168 .. 7 203 .. 0.73
Alignments for each domain:
== domain 1 score: 36.5 bits; conditional E-value: 1.5e-12
TIGR04283 2 SiiiPvlnEaetleelladlqalreeal..Evivvdggssdktveiaks.lga...kviesek..GRarQmnaG..akaAkgeiLlFLHaDtrlpkdl 89
+iiiP++n ++ l+++l+++ + +e+ +v+++d gs+d+t++ia++ l+ i s++ ++ +n+ k + ++ ++L aD r++kd+
MMSYN1_0114 8 TIIIPCYNMQDFLNQCLDSIYQNKESEKylDVLIIDDGSTDNTIKIANKyLKKhknIFIYSKPnaHWGSVINYVkhNKLINTKYAFILDADDRISKDF 105
7*******************9988766557*****************99544455533444442456777776511566789999************* PP
TIGR04283 90 leaikkalakekkkagaFklrfdkkk..lllrllellvnlrsrllgiayGDQglfvrrslFee 150
+ + +++++++ g Fk ++ k+ ++ ++l++ + +l ++ ++f + ++++
MMSYN1_0114 106 TNLLINVVEPSNVDLGIFKTKILYKNknSIVVNPRWLSKKQKTFLPMIIPCSTIFKTDIFYKS 168
********************9965542255555556666555555555555555555555555 PP
>> TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.6 1.4 2.1e-12 1.2e-09 44 151 .. 4 114 .. 1 137 [. 0.79
2 ? -2.4 0.0 0.73 4.1e+02 246 283 .. 240 279 .. 232 286 .. 0.73
Alignments for each domain:
== domain 1 score: 35.6 bits; conditional E-value: 2.1e-12
TIGR03937 44 vpkvsllvpcynegenveetisallklkypn..leviainDGskDdtaeildklakkedrlrvihleenq..GkaaalneglkaakseylvciDgDal 137
+ ++++pcyn ++ +++ ++++ + k + l+v++i+DGs+D+t +i +k kk++++ i+ + n+ G + k +++y +D+D
MMSYN1_0114 4 KKLCTIIIPCYNMQDFLNQCLDSIYQNKESEkyLDVLIIDDGSTDNTIKIANKYLKKHKNIF-IYSKPNAhwGSVINYVKHNKLINTKYAFILDADDR 100
56789*****************9988766542259******************999999765.555577612555555567788999**********9 PP
TIGR03937 138 ldekalkylveelk 151
+ ++ ++ l++ ++
MMSYN1_0114 101 ISKDFTNLLINVVE 114
99999999988765 PP
== domain 2 score: -2.4 bits; conditional E-value: 0.73
TIGR03937 246 alcwvLmPetlkGlykqrlrWa..qGGaevllkelkkllk 283
l+ + +P +kGl k ++ a + + llk++++++k
MMSYN1_0114 240 FLARIALPGYIKGLSKANIKIAfnKNKVDLLLKNASRFFK 279
5778999999999999988766225556668888877765 PP
>> TIGR03111 glyc2_xrt_Gpos1: putative glycosyltransferase, exosortase G-associated
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.1 5.9 1.1e-11 6e-09 51 156 .. 7 113 .. 2 144 .. 0.78
Alignments for each domain:
== domain 1 score: 33.1 bits; conditional E-value: 1.1e-11
TIGR03111 51 itiiiPvynsedtlknciesiknssypkklidvilvnnqssddsfkvfaraqkefpelslrylnsdqGkakalnaaiyks..iGkyiinidsdGvlek 146
tiiiP yn +d l++c++si++++ +k +dv+++++ s+d++ k+ + k+++++++ y + + +n ++ + ky +d+d ++k
MMSYN1_0114 7 CTIIIPCYNMQDFLNQCLDSIYQNKESEKYLDVLIIDDGSTDNTIKIANKYLKKHKNIFI-YSKPNAHWGSVINYVKHNKliNTKYAFILDADDRISK 103
69*************************************************999999987.4444444445555555543226788888888888888 PP
TIGR03111 147 daiknmvtrf 156
d ++
MMSYN1_0114 104 DFTNLLINVV 113
7655555444 PP
>> TIGR04242 nodulat_NodC: chitooligosaccharide synthase NodC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.8 0.2 1.6e-08 9e-06 51 156 .. 8 113 .. 3 142 .. 0.71
Alignments for each domain:
== domain 1 score: 22.8 bits; conditional E-value: 1.6e-08
TIGR04242 51 dvivpcfnedpstlseclasiae.qdyaGklkvyvvddGsenrdalaavhdayasdprfsfvllpknv..Gkrkaqiaairrssgdlvlnvdsdtvia 145
+i+pc+n + + l++cl si + ++ + l v ++ddGs++ + ++ ++y + ++ +f+ + n G ++ + ++ + +d+d i
MMSYN1_0114 8 TIIIPCYNMQ-DFLNQCLDSIYQnKESEKYLDVLIIDDGSTDNT--IKIANKYLKKHKNIFIYSKPNAhwGSVINYVKHNKLINTKYAFILDADDRIS 102
58******86.689*******8615667779*********9654..5778888888888887766554225555555555555666666667777777 PP
TIGR04242 146 kdvvtklalkm 156
kd + l++ +
MMSYN1_0114 103 KDFTNLLINVV 113
77666665555 PP
>> TIGR03965 mycofact_glyco: mycofactocin system glycosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.5 0.0 1.9e-08 1e-05 75 124 .. 6 55 .. 1 71 [. 0.87
Alignments for each domain:
== domain 1 score: 22.5 bits; conditional E-value: 1.9e-08
TIGR03965 75 svtvVvPvrdrpaglarllaalealdyprdrlevivVDDgSedpvetaaa 124
t+++P + ++ l+++l+++ + ++ +l+v+++DDgS+d++ ++a
MMSYN1_0114 6 LCTIIIPCYNMQDFLNQCLDSIYQNKESEKYLDVLIIDDGSTDNTIKIAN 55
579*******************99999****************9987755 PP
>> TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.8 0.0 3.5e-08 2e-05 47 164 .. 8 117 .. 4 136 .. 0.71
Alignments for each domain:
== domain 1 score: 21.8 bits; conditional E-value: 3.5e-08
TIGR03469 47 vavvPardeaevigeaveslleqdY.pGklkvilvDDeseDgtaeiarevaealdkadrltvvsgkelpkgWsGklWaveqGleaakalaaeyllltD 143
++++P + ++++++++s+ + + + l v+++DD s+D t +ia++ ++++ ++ + + + ++ W + +++ k ++++y ++ D
MMSYN1_0114 8 TIIIPCYNMQDFLNQCLDSIYQNKEsEKYLDVLIIDDGSTDNTIKIANKYLKKHK---NIFIY-S-KPNAHWGSV----INYVKHNKLINTKYAFILD 96
689*****************98765156699***************998877554...33332.2.333445432....3445555556667777777 PP
TIGR03469 144 aDiahepdnlarlvakaeked 164
aD + ++d + l++ +e +
MMSYN1_0114 97 ADDRISKDFTNLLINVVEPSN 117
776666666555555555555 PP
>> TIGR04440 glyco_TIGR04440: glycosyltransferase domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.1 2.8 1.8e-07 0.0001 2 97 .. 7 104 .. 6 117 .. 0.67
Alignments for each domain:
== domain 1 score: 20.1 bits; conditional E-value: 1.8e-07
TIGR04440 2 ltliiPtknRpeylkrlLr..yladekcdy.kIlia.DsSkekeneknlkvlknlenlnveylhypselepfaeklldv..leqvetkYvvicaDDDf 93
+t+iiP +n +++l+++L+ y ++e+ +y +li+ D+S+++ ++ k+lk+ + + + y++ + ++ ++ v + ++tkY +i + DD
MMSYN1_0114 7 CTIIIPCYNMQDFLNQCLDsiYQNKESEKYlDVLIIdDGSTDNTIKIANKYLKK----HKNIFIYSKPNAHWGSVINYVkhNKLINTKYAFILDADDR 100
7*****************944444556666778887577777655555345544....3444555544555554444331145699999999999998 PP
TIGR04440 94 iips 97
i ++
MMSYN1_0114 101 ISKD 104
7765 PP
>> TIGR04182 glyco_TIGR04182: glycosyltransferase, TIGR04182 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.0 0.0 3.1e-07 0.00017 3 92 .. 8 108 .. 6 122 .. 0.68
Alignments for each domain:
== domain 1 score: 19.0 bits; conditional E-value: 3.1e-07
TIGR04182 3 cvliPtlneaatigevieef....kelGyedilvidGnstddtqeiake....aGarvvaqsGkGkGqavreave...lidkpyvllldgdgtylped 89
+++iP +n ++ +++ ++++ +++ y d+l+id +std+t +ia++ + + + + +v++ v+ li+++y +ld+d + +
MMSYN1_0114 8 TIIIPCYNMQDFLNQCLDSIyqnkESEKYLDVLIIDDGSTDNTIKIANKylkkHKNIFIYSKPNAHWGSVINYVKhnkLINTKYAFILDADDRISKDF 105
799*****99888877766522115678*******************862221333344445555555555555434489999999999998765554 PP
TIGR04182 90 aea 92
++
MMSYN1_0114 106 TNL 108
444 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (306 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 187 (0.0416667); expected 89.8 (0.02)
Passed bias filter: 94 (0.0209447); expected 89.8 (0.02)
Passed Vit filter: 13 (0.00289661); expected 4.5 (0.001)
Passed Fwd filter: 8 (0.00178253); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.19u 0.10s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 2197.15
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0114 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0115 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0115.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0115/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0115 [L=290]
Description: galU 4=Probable Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-90 301.3 0.7 1.7e-90 301.1 0.7 1.0 1 TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase
4.8e-45 152.0 0.1 6e-45 151.6 0.1 1.1 1 TIGR01105 galF: regulatory protein GalF
2.2e-41 139.9 0.6 8e-39 131.4 0.6 2.0 1 TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransfera
2.6e-39 133.2 0.1 2.9e-24 83.6 0.0 2.0 2 TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase
7.8e-21 72.4 0.1 5.6e-19 66.3 0.1 2.0 1 TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase
2.5e-12 44.3 0.0 9.9e-11 39.1 0.0 2.0 1 TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/gluc
3.1e-10 37.6 0.0 4.3e-10 37.1 0.0 1.2 1 TIGR02091 glgC: glucose-1-phosphate adenylyltransferase
1.6e-08 32.3 0.0 2.3e-08 31.8 0.0 1.2 1 TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransf
5.3e-05 20.7 0.0 9.3e-05 19.9 0.0 1.4 1 TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidyly
8e-05 20.6 0.0 0.00018 19.5 0.0 1.7 1 TIGR03310 matur_MocA_YgfJ: molybdenum cofactor cytidylyltran
0.004 14.0 0.0 0.061 10.0 0.0 2.0 2 TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/m
Domain annotation for each model (and alignments):
>> TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 301.1 0.7 4.1e-93 1.7e-90 1 261 [] 3 262 .. 3 262 .. 0.99
Alignments for each domain:
== domain 1 score: 301.1 bits; conditional E-value: 4.1e-93
TIGR01099 1 irkaviPaaGlGtrlLPatkaiPkemlpivdkPliqyvveeaveaGieeivlvtgrskraiedhfDtsyeleaklekknkeellkevrkiaelatily 98
irkaviP aG+Gtr+LP tk++ kemlpi+d P+i+y+v+ea+++Gi+ei++v + +k i+++f +++ele+ l +k+k ++l+++++ a+i+y
MMSYN1_0115 3 IRKAVIPCAGFGTRFLPFTKSQAKEMLPIIDTPTIEYIVKEAIDSGIKEILIVLNDKKSEIMNYFSRNIELERFLYNKDKINELEQIKTKY-DADIHY 99
89*************************************************************************************9755.58**** PP
TIGR01099 99 vrqkeakGLGhavllaeelvgdepfavllgDdlvseeeealkqlielyektgasiiaveevpkeevskYGvidgeeveeelyevkdlvekPkpeeaps 196
+ q e GLGha+ l + ++ +e+favllgDdl++ +++a+kql++lye+ +++i++ ++k++ +kYG+ ++e++++++y+v ++vekP++++aps
MMSYN1_0115 100 IMQDEPLGLGHAISLCKGFINNESFAVLLGDDLFKCQTPAIKQLMDLYEEKHSTILGTILIDKKDCKKYGICKTESSNDNVYKVCSVVEKPDEQNAPS 197
************************************************************************************************** PP
TIGR01099 197 nlaivGrYvltpeifelleetkaGkggeiqltDalrlllekeevlavklkgkryDvGdklgylka 261
n+ai GrY+ltpeif++l+ + +G+ gei ltD++ ++++ + +a ++gkryD+G+klgyl+a
MMSYN1_0115 198 NVAIAGRYILTPEIFNYLDLQLKGETGEIELTDSILRTIKDVDCYAKVIDGKRYDIGNKLGYLEA 262
***************************************************************97 PP
>> TIGR01105 galF: regulatory protein GalF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 151.6 0.1 1.5e-47 6e-45 1 295 [. 1 285 [. 1 287 [. 0.88
Alignments for each domain:
== domain 1 score: 151.6 bits; conditional E-value: 1.5e-47
TIGR01105 1 mtnlkavipvaglgmhmlpatkaipkemlpivdkpmiqyivdeivaagikeillvthasknavenhfdtsyeleslleqrvkrqllaevqsicppgvt 98
mt kavip ag+g +lp tk+ kemlpi+d p i+yiv e + +gikeil+v k + n+f ele +l ++ k + l ++++
MMSYN1_0115 1 MTIRKAVIPCAGFGTRFLPFTKSQAKEMLPIIDTPTIEYIVKEAIDSGIKEILIVLNDKKSEIMNYFSRNIELERFLYNKDKINELEQIKTKYD--AD 96
6778***************************************************************************999998888887655..56 PP
TIGR01105 99 imnvrqaeplglghsilcarpvvgdnpfvvvlpdvviddasadplrynlaamiarfnetgrsqvlakrmpgdlseysviqtkepldregkvsrivefi 196
i + q eplglgh+i ++ + ++ f v+l d ++ + p +l + t +l + d +y + +t d+ kv+ ++
MMSYN1_0115 97 IHYIMQDEPLGLGHAISLCKGFINNESFAVLLGDDLFKCQT--PAIKQLMDLYEEKHSTILGTILID--KKDCKKYGICKTESSNDNVYKVC---SVV 187
78899***********999**************99987554..555566665555555555555544..57999*******98877766655...566 PP
TIGR01105 197 ekpdqpqtldsdlmavgryvlsadiwaelertepgawgriqltdaiaelakkqsvdamlmtgdsydcgkkmgymqafvkyglrnlkegakfrksiekl 294
ekpd+ q s++ gry+l+ +i++ l+ g g i+ltd+i k a ++ g+ yd g+k+gy++afv + f k ++kl
MMSYN1_0115 188 EKPDE-QNAPSNVAIAGRYILTPEIFNYLDLQLKGETGEIELTDSILRTIKDVDCYAKVIDGKRYDIGNKLGYLEAFVDFASNRDDTKNEFIKIVKKL 284
8**98.67799*********************************************************************988888888899999888 PP
TIGR01105 295 l 295
MMSYN1_0115 285 N 285
6 PP
>> TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 131.4 0.6 2e-41 8e-39 1 231 [. 5 263 .. 5 274 .. 0.84
Alignments for each domain:
== domain 1 score: 131.4 bits; conditional E-value: 2e-41
TIGR01208 1 kalilaaGkGtrlrPltftrakqlipvankPilqyaiedlveagikdigivvsee...................tkeeikeivgegekfgvkityilq 79
ka+i++aG Gtr+ P+t ++ak+++p+++ P + y +++ ++ gik+i iv+ ++ +k++i+e + +k+++ i yi+q
MMSYN1_0115 5 KAVIPCAGFGTRFLPFTKSQAKEMLPIIDTPTIEYIVKEAIDSGIKEILIVLNDKkseimnyfsrnielerflyNKDKINELEQIKTKYDADIHYIMQ 102
89*************************************************9886222222222222222222245677777777889********** PP
TIGR01208 80 keplGlahavlvardflgdedfvvylGdnlleeg...ikkfvksfeekdldal.illkkvkdPtafGvaeled.Gk...rilklvekPke..ppsnla 167
+eplGl+ha+ +++ f+++e f v lGd+l++ + ik+ ++ +eek++ l +l + kd +++G+ + e + ++ +vekP+e psn+a
MMSYN1_0115 103 DEPLGLGHAISLCKGFINNESFAVLLGDDLFKCQtpaIKQLMDLYEEKHSTILgTILIDKKDCKKYGICKTESsNDnvyKVCSVVEKPDEqnAPSNVA 200
*******************************8643339999******9998764567888*********998744422257789****762269**** PP
TIGR01208 168 vvGlylfrplifeaikelkPswrgeleitdaiqkliekgykvelakvkGWWkdtGkkedllean 231
++G y+++p if+ ++ ge+e+td+i i k+ + + G d+G+k + lea
MMSYN1_0115 201 IAGRYILTPEIFNYLDLQLKGETGEIELTDSILRTI-KDVDCYAKVIDGKRYDIGNKLGYLEAF 263
***************98888899*********9999.56778889999*******999999885 PP
>> TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.7 0.0 5.7e-16 2.3e-13 2 69 .. 5 72 .. 4 77 .. 0.95
2 ! 83.6 0.0 7e-27 2.9e-24 55 225 .. 78 264 .. 75 279 .. 0.84
Alignments for each domain:
== domain 1 score: 47.7 bits; conditional E-value: 5.7e-16
TIGR03992 2 kavilaAGkGeRlrPltetrpKvllpvagkpllehliealkeagieelvlvvgyekekvkeyfgdksk 69
kavi +AG G+R+ P t++++K +lp+ ++p +e++++++ + gi+e+++v++ +k+++ +yf+++ +
MMSYN1_0115 5 KAVIPCAGFGTRFLPFTKSQAKEMLPIIDTPTIEYIVKEAIDSGIKEILIVLNDKKSEIMNYFSRNIE 72
89*************************************************************99766 PP
== domain 2 score: 83.6 bits; conditional E-value: 7e-27
TIGR03992 55 yekekvkeyfgdksklgveveyveqeeqlGtadAlkaakekv.ddeflvlngDvll..eseeleklieaee....aai..avvevedpsdyGvvevee 143
y+k+k++e + k+k++ +++y+ q+e lG ++A++ k + +++f vl gD l+ ++ ++++l++ +e +++ +++ +d ++yG+ ++e+
MMSYN1_0115 78 YNKDKINELEQIKTKYDADIHYIMQDEPLGLGHAISLCKGFInNESFAVLLGDDLFkcQTPAIKQLMDLYEekhsTILgtILIDKKDCKKYGICKTES 175
999999999999999***************************5599*******99844566788887766555543331134678999*******944 PP
TIGR03992 144 g.....kvteivEKp..eeppsnliNaGiYlleeeifellekvklSeRgElEltdalkalieeekvkaveldekWldvgrPWdlleane 225
kv ++vEKp +++psn++ aG Y+l++eif++l+ + e gE+Eltd++ ++i++ + a +d+k d+g+ +lea
MMSYN1_0115 176 SndnvyKVCSVVEKPdeQNAPSNVAIAGRYILTPEIFNYLDLQLKGETGEIELTDSILRTIKDVDCYAKVIDGKRYDIGNKLGYLEAFV 264
33567778999****66689*********************9999********************9999999999****9888888765 PP
>> TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 66.3 0.1 1.4e-21 5.6e-19 2 198 .. 6 230 .. 5 246 .. 0.74
Alignments for each domain:
== domain 1 score: 66.3 bits; conditional E-value: 1.4e-21
TIGR01207 2 GiilaGGsGtrlypitlavskqllpvydkpmiyyplsvlmlaGirdiliistpedtp...rf......krllGd..........GsefGvelsyavqe 80
+i G Gtr+ p t++ +k++lp+ d p i y + + +Gi++ili+ +++ +f +r+l + +++ +++y +q+
MMSYN1_0115 6 AVIPCAGFGTRFLPFTKSQAKEMLPIIDTPTIEYIVKEAIDSGIKEILIVLNDKKSEimnYFsrnielERFLYNkdkineleqiKTKYDADIHYIMQD 103
6788899******************************************97655432111231111112333221111112222688999******** PP
TIGR01207 81 spdGlaqafiigeefidddksalvlGdnifyGkd..lsellkraaakeeGatvfayqv...kdperyGvvefdee....graisleekpakpk..sny 167
+p Gl +a + + fi++++ a++lGd++f + +++l+ ++k +t+++ + kd ++yG+ + +++ ++ s+ ekp + + sn
MMSYN1_0115 104 EPLGLGHAISLCKGFINNESFAVLLGDDLFKCQTpaIKQLMDLYEEK--HSTILGTILidkKDCKKYGICKTESSndnvYKVCSVVEKPDEQNapSNV 199
******************************98752245555444433..3455554431227899****98654311226899******7654339** PP
TIGR01207 168 avtGlyfydnkvveiarelkpsarGeleitd 198
a++G y+ ++ ++ + + Ge+e+td
MMSYN1_0115 200 AIAGRYILTPEIFNYLDLQLKGETGEIELTD 230
**************999888999******98 PP
>> TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.1 0.0 2.4e-13 9.9e-11 2 204 .. 5 237 .. 4 252 .. 0.77
Alignments for each domain:
== domain 1 score: 39.1 bits; conditional E-value: 2.4e-13
TIGR01173 2 svviLAAGkGtRm...kSklpKvLhelagkpmlehvieaarklsaekivvvlghgaeevkealkees.........................vkfvlq 71
++vi AG GtR+ + + K + ++ + p +e+++++a + ++i +vl++++ e+++ ++++ +++++q
MMSYN1_0115 5 KAVIPCAGFGTRFlpfTKSQAKEMLPIIDTPTIEYIVKEAIDSGIKEILIVLNDKKSEIMNYFSRNIelerflynkdkineleqiktkydadIHYIMQ 102
579999******74444556788889**********************************999887667788999999*************99***** PP
TIGR01173 72 eeqlgTghAvkqalkalseeeeevlvlygDvPL.isketleklleskkee...kvtlltakledptgyGrivreee.g...kvekivEekDaseeeke 161
+e+lg ghA++ + +++ +e+ vl gD + ++ ++++l++ +e+ ++ + ++ +d + yG e++ + kv ++vE+ D +++ +
MMSYN1_0115 103 DEPLGLGHAISLCKGFIN--NESFAVLLGDDLFkCQTPAIKQLMDLYEEKhstILGTILIDKKDCKKYGICKTESSnDnvyKVCSVVEKPDEQNAPSN 198
***************999..6666777776544267778999888777762223444567889******77655443511245567788777776666 PP
TIGR01173 162 ikeintGvyvfeskalkealaklsnnnaqgEyYltdvialaka 204
+ +G y+++ + + ++l l+ + ++gE ltd i + +
MMSYN1_0115 199 VA--IAGRYILTPE-IFNYL-DLQLKGETGEIELTDSILRTIK 237
54..5899999877.55566.4677788999999997755544 PP
>> TIGR02091 glgC: glucose-1-phosphate adenylyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.1 0.0 1.1e-12 4.3e-10 3 263 .. 6 270 .. 4 283 .. 0.76
Alignments for each domain:
== domain 1 score: 37.1 bits; conditional E-value: 1.1e-12
TIGR02091 3 alvLaGGeGsrLspLtkkrakPavpfggkyrliDfalsncinsglkkilvltqyksasLnrhlkkgweldr..lldefvellaaqqreeekk.Wy..k 95
a++ + G G+r p tk++ak +p+ + i+ + ++i+sg+k+il++ k ++ ++ +++ el+r +++ ++ l +++ + + y +
MMSYN1_0115 6 AVIPCAGFGTRFLPFTKSQAKEMLPIIDT-PTIEYIVKEAIDSGIKEILIVLNDKKSEIMNYFSRNIELERflYNKDKINELEQIKTKYDADiHYimQ 102
678899*******************9865.578999**********************************9755567787777666644433144224 PP
TIGR02091 96 Gtadavyqnlellee.veveyvlilsgDhiYkmd...yekllkkhiekkadvtvaalevprkeAsefGvlkvdeeg....riveFeEKpkkpkslkkk 185
+ + ++l + ++ e + +l gD ++k + +++l++ e+k ++ ++++ +++k+ +++G+ k+++++ ++ + +EKp ++++
MMSYN1_0115 103 DEPLGLGHAISLCKGfINNESFAVLLGDDLFKCQtpaIKQLMDL-YEEKHSTILGTILIDKKDCKKYGICKTESSNdnvyKVCSVVEKPDEQNA---- 195
4444566777777766788999**********982224555555.5556667899***************997543222256777888844433.... PP
TIGR02091 186 edkslasmGiYiFkkevLkelleedakeeesseDfGkdiipklleegkvqaykfsgYWrDvGtidsfyeanldlvsee 263
+ +a G Yi + e ++++l + k e+ + ++ i+ + +++ + +a +g D+G + ea +d+ s++
MMSYN1_0115 196 -PSNVAIAGRYILTPE-IFNYLDLQLKGETGEIELTDSILRT-IKDVDCYAKVIDGKRYDIGNKLGYLEAFVDFASNR 270
.3567888****9887.5788999899999999998888765.56667777777777779999999999999988876 PP
>> TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.8 0.0 5.6e-11 2.3e-08 2 200 .. 5 216 .. 4 234 .. 0.77
Alignments for each domain:
== domain 1 score: 31.8 bits; conditional E-value: 5.6e-11
TIGR02623 2 kavilagglgtriseetalrpkpmveiggkpilwhilkiysaygikefiiclgykgyvikeyfa.nyflhtsdvtldlednkievhekkaepwkvtlv 98
kavi g+gtr+ t+ + k m+ i p + +i+k gike++i l k i +yf n l+ d ++ +++ +k + + +
MMSYN1_0115 5 KAVIPCAGFGTRFLPFTKSQAKEMLPIIDTPTIEYIVKEAIDSGIKEILIVLNDKKSEIMNYFSrNIELERFLYNKDKINELEQIK-TKYD-ADIHYI 100
89****************************************************99999999963556665555555444444444.4433.456777 PP
TIGR02623 99 dtgestqtggrlkrvreyledeafcltygdgvadid...ikaliafhkkegkk..atl.tavqppgrfgalelege.....svtsfkekpkgdgglin 185
e g + + ++++e+f + gd + + + ik+l+++++++ + t+ + ++g + e++ +v s ekp ++++ n
MMSYN1_0115 101 MQDEPLGLGHAISLCKGFINNESFAVLLGDDLFKCQtpaIKQLMDLYEEKHSTilGTIlIDKKDCKKYGICKTESSndnvyKVCSVVEKPDEQNAPSN 198
77788999***********************988753337888877655443311343144567889**998876422233577889****9998666 PP
TIGR02623 186 ...ggffvlepkvldlid 200
g ++l p++++++d
MMSYN1_0115 199 vaiAGRYILTPEIFNYLD 216
3346899*******9987 PP
>> TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.9 0.0 2.3e-07 9.3e-05 2 60 .. 6 66 .. 5 76 .. 0.87
Alignments for each domain:
== domain 1 score: 19.9 bits; conditional E-value: 2.3e-07
TIGR00453 2 avilAAGrgeRl...gskvpKqylelagkplllhaleallaseavkevvvvvseedeellqk 60
avi+ AG g+R+ +++ K l++ ++p +++ ++ +s +ke+ +v++++++e+++
MMSYN1_0115 6 AVIPCAGFGTRFlpfTKSQAKEMLPIIDTPTIEYIVKEAIDS-GIKEILIVLNDKKSEIMNY 66
8**********64437899******************99995.9*********999887764 PP
>> TIGR03310 matur_MocA_YgfJ: molybdenum cofactor cytidylyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.5 0.0 4.4e-07 0.00018 2 64 .. 6 73 .. 5 161 .. 0.89
Alignments for each domain:
== domain 1 score: 19.5 bits; conditional E-value: 4.4e-07
TIGR03310 2 aiilAaGlssRM.....GknKllLplkgktileevvenvlelafdevivvlgeeadelvellankkki 64
a+i+ aG+++R + K +Lp+ + +e +v+++ + ++e+++vl++++ e+++ ++++ ++
MMSYN1_0115 6 AVIPCAGFGTRFlpftkSQAKEMLPIIDTPTIEYIVKEAIDSGIKEILIVLNDKKSEIMNYFSRNIEL 73
8999*******755555799************************************999988765444 PP
>> TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.7 0.0 0.05 20 3 64 .. 6 65 .. 5 77 .. 0.78
2 ! 10.0 0.0 0.00015 0.061 146 190 .. 162 206 .. 120 219 .. 0.70
Alignments for each domain:
== domain 1 score: 1.7 bits; conditional E-value: 0.05
TIGR01479 3 pvilaGGsGsrLWPlsrelypkqflklsgdetllqetlkrleeleleePlvicneehrflva 64
+vi + G G+r+ P+++++ +k +l + ++ +++ +k + ++ ++e l++ n++ +++
MMSYN1_0115 6 AVIPCAGFGTRFLPFTKSQ-AKEMLPIIDTP-TIEYIVKEAIDSGIKEILIVLNDKKSEIMN 65
689999*********9865.79999998765.567888888888999999999988766655 PP
== domain 2 score: 10.0 bits; conditional E-value: 0.00015
TIGR01479 146 tkpetgyGyirrgeeleedvyevekfvekPdletaeeyle.sgeyl 190
+k yG i ++e+ +++vy+v + vekPd ++a + ++ +g y+
MMSYN1_0115 162 KKDCKKYG-ICKTESSNDNVYKVCSVVEKPDEQNAPSNVAiAGRYI 206
44445688.555678899****************987765245565 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (290 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 216 (0.0481283); expected 89.8 (0.02)
Passed bias filter: 125 (0.027852); expected 89.8 (0.02)
Passed Vit filter: 22 (0.00490196); expected 4.5 (0.001)
Passed Fwd filter: 11 (0.00245098); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 11 [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.24
# Mc/sec: 1735.22
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0115 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0116 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0116.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0116/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0116 [L=146]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (146 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 411 (0.0915775); expected 89.8 (0.02)
Passed bias filter: 129 (0.0287433); expected 89.8 (0.02)
Passed Vit filter: 13 (0.00289661); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1048.31
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0116 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0117 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0117.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0117/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0117 [L=253]
Description: plsY 5=Equivalog Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-43 146.7 15.6 3.1e-43 145.8 15.6 1.3 1 TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acy
------ inclusion threshold ------
0.7 7.0 10.1 0.69 7.0 9.3 1.3 1 TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyp
Domain annotation for each model (and alignments):
>> TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 145.8 15.6 1.4e-46 3.1e-43 5 191 .. 6 242 .. 3 247 .. 0.90
Alignments for each domain:
== domain 1 score: 145.8 bits; conditional E-value: 1.4e-46
TIGR00023 5 ivlllllaYLlGsissallvgkilkgkdirelGsknpGAtnvlRvlgkkaallvlilDilKGllavllsfllflsdllqllva.......iaavlGHi 95
i++ +++Y lGsis +++++k + +dir++Gs+npGAtn++R+lgk+ +l+v+ lD+lK +++ + + ll + + + i+a++GH+
MMSYN1_0117 6 IIIASVIGYFLGSISWSIIIVKKVGNIDIRTVGSGNPGATNTVRALGKRWGLVVAFLDALKVVFTAISAILLSMIPNDLFS-QtsyfipcIFALIGHC 102
567789*********************************************************998888777663332222.13555566******** PP
TIGR00023 96 fpiflkFkGGKavatalGsllllslllalimlavwllvllltkyvsLaslvtalvlaiivlvlkldyl.............................. 163
+pi++kFkGGKav+ lG l+++++l +i l +w++ + +++ vs+as+ +al++ +i++++ l
MMSYN1_0117 103 YPIYYKFKGGKAVSCFLGLLFVVNVLYLIIFLIIWFISVAISRKVSVASMFSALIILLIMWIPYLSGVsyfiwewnglekfsfawknyilfsllnsfh 200
******************************************************99999888888777999********************9999999 PP
TIGR00023 164 ..............yiilvlvlilvllrHranikrllrkkEk 191
ii+ + +++ +rH +nikr+ +k+E+
MMSYN1_0117 201 ywlsntwasgilegNIIILIGGLILAWRHSQNIKRIKNKTEP 242
99999999999986666655569999**************97 PP
>> TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.0 9.3 0.00031 0.69 2 108 .. 62 163 .. 61 180 .. 0.77
Alignments for each domain:
== domain 1 score: 7.0 bits; conditional E-value: 0.00031
TIGR03025 2 ldllllvlalllallllslkllleeeesslllllllllllilfalaglyrskrrrslleelarvllalllllllllalafllkslslsrlvlllalll 99
ld+l +v+++++a +lls+ ++ +++s+++ ++++l+ ++ ++ y+ ++ + ++ ++ +l ++ +l+l+++++++++ +++sr+v +++++
MMSYN1_0117 62 LDALKVVFTAISA-ILLSMIPNDLFSQTSYFIPCIFALIGHCYPIY--YK-FKGGKAVSCFLGLLFVVNVLYLIIFLIIWFIS-VAISRKVSVASMFS 154
5677777777777.66777777777777888888777777777664..55.78888888889999999999999988888888.9******9999998 PP
TIGR03025 100 alllllllr 108
al++ll++
MMSYN1_0117 155 ALIILLIMW 163
888887764 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (253 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 346 (0.0770945); expected 89.8 (0.02)
Passed bias filter: 88 (0.0196078); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1816.59
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0117 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0126 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0126.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0126/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0126 [L=483]
Description: gluRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.9e-172 570.3 11.1 8.8e-172 570.2 11.1 1.0 1 TIGR00464 gltX_bact: glutamate--tRNA ligase
2.5e-65 218.5 0.0 3.3e-65 218.1 0.0 1.2 1 TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synth
1.3e-37 127.5 0.5 1.3e-37 127.5 0.5 1.5 2 TIGR00463 gltX_arch: glutamate--tRNA ligase
1.1e-16 58.8 0.8 1.1e-16 58.8 0.8 1.8 2 TIGR00440 glnS: glutamine--tRNA ligase
Domain annotation for each model (and alignments):
>> TIGR00464 gltX_bact: glutamate--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 570.2 11.1 7.8e-175 8.8e-172 3 464 .. 4 479 .. 2 483 .] 0.96
Alignments for each domain:
== domain 1 score: 570.2 bits; conditional E-value: 7.8e-175
TIGR00464 3 rvRfAPSPTGylHiGglRtAlfnyllAkntngeFllRiEDTDkeRnieeaeeeileilkwlgiewde..........gpylQskrldiykklikeLle 90
r+R+APSPTG+lHiG++RtAl nyl+Ak+ ng+F++RiEDTD+ Rn+ +a+e+++e+l+wlgi de g y+Qs+++d+yk+l+++L++
MMSYN1_0126 4 RLRYAPSPTGFLHIGNTRTALMNYLFAKHYNGSFIVRIEDTDLTRNVDGAIESQFENLNWLGIFPDEsifnvgdqkyGKYMQSQKFDRYKQLAEQLVD 101
89************************************************************************************************ PP
TIGR00464 91 egkAYrCycskEeLeklreeqkakke.tprYdrkcrnleeeeiekklakgekpvvRlkipeeaevsfnDlvrgeiklenselddlvilksdglptYnl 187
++kAYrC+c++EeLek eeq++k + +Y++kc l++++i+k+l++++++++R+k+pe+++ + nD+vrg +++++++l+d+vilks+g++tYn+
MMSYN1_0126 102 QNKAYRCFCTSEELEKDYEEQTSKGIiATKYSQKCLFLTQDQIQKNLENKKEYSIRFKVPENKTWTINDIVRGDVSFDSKDLGDFVILKSNGVATYNF 199
********************9998862689******************************************************************** PP
TIGR00464 188 avvvDDllmkithviRgedhisntpkqillykAlgakipkfaHlplildeegkKLSKRdg..atsieqfkeqGyLpeAliNylallGwspddkkEvFs 283
avv+DD++m+ithv+Rge+hisntp+q+++y+A++++ pkf+Hl+li+d+ gkKLSKR g +ieq+k+qGyL +A++Ny+allGwsp+ ++E+ s
MMSYN1_0126 200 AVVIDDYDMQITHVLRGEEHISNTPRQMMIYDAFNWNYPKFGHLTLIVDNTGKKLSKRSGnaLFFIEQYKKQGYLSQAIFNYIALLGWSPPGEQEILS 297
************************************************************77789********************************* PP
TIGR00464 284 leelieiFslervskspalfdlkkLkwlNkeylkelkdeellellkphlkkk.vklstleeeqlkellkllkerlktlkelaeeiklffedkkevded 380
++eli+iF+ +r sksp++fd+ k+kw+N+ y+k+l+d+++le++k +++++ ++ +e l++ll l+k++l++ ++++++++lff++++ +d++
MMSYN1_0126 298 QNELIKIFDEKRFSKSPSTFDMVKMKWINSVYMKKLDDDKYLEFVKSFINTNkFDITSKSEAWLNHLLLLYKKELEYAEQINDHLDLFFNKNT-LDNN 394
************************************************998635555555555**************************8765.5666 PP
TIGR00464 381 akkklek.kevkevleklkkklealeeltaeevesaikevaeelelkkkkllkplRvaltgkeqgpelaeilellgkeeavkrlk 464
+ l++ ++ k+v+e +k+++++l+++t e+++++ik++ + ++k+k+l++p+R+ +t +e+gp+la+++ llgk+++++ ++
MMSYN1_0126 395 TIDVLNNlTNYKNVVEIFKNQINDLKDWTIENIKQIIKNTSTLANVKGKDLFMPIRIFATKSEHGPSLADVIYLLGKTTVLNNIN 479
666665559************************************************************************9997 PP
>> TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 218.1 0.0 3e-68 3.3e-65 4 260 .. 6 290 .. 3 302 .. 0.85
Alignments for each domain:
== domain 1 score: 218.1 bits; conditional E-value: 3e-68
TIGR03838 4 RfAPsPtGpLHlGslvaalasyldaraaggkwlvRieDlDtpRevpgaaeeilatLealglewDeevv..........yQserkelYqaalerlkaag 91
R+APsPtG LH+G+ ++al yl a++ +g+++vRieD D +R+v+ga e++ ++L++lg+ +De++ +Qs++ ++Y++ e+l +++
MMSYN1_0126 6 RYAPSPTGFLHIGNTRTALMNYLFAKHYNGSFIVRIEDTDLTRNVDGAIESQFENLNWLGIFPDESIFnvgdqkygkyMQSQKFDRYKQLAEQLVDQN 103
9******************************************************************99***************************** PP
TIGR03838 92 laYpCactRkeiaaa......ereeelvypgtcregl......kekeareaalrlrveeee.vafeDrlqgeleqdlaaevgdfvlrRadglfaYqLa 176
+aY+C ct +e+++ + + y+++c + + ++++e ++r++v+e++ ++++D + g+++ d ++++gdfv+ +++g+ +Y++a
MMSYN1_0126 104 KAYRCFCTSEELEKDyeeqtsKGIIATKYSQKCLFLTqdqiqkNLENKKEYSIRFKVPENKtWTINDIVRGDVSFD-SKDLGDFVILKSNGVATYNFA 200
*************99887555333345577777541134455566677889******9765389*********999.889****************** PP
TIGR03838 177 vvvDDaeqgvtevvRGaDLlestarQilLqrlLglptpeylHlPlvlnadGekLsKqngaka..ldes....epeaalaaalrllglape 260
vv+DD ++++t+v+RG++ +++t+rQ++++++++++ p++ Hl l+++++G+kLsK++g + +++ ++a+ + ++llg++p+
MMSYN1_0126 201 VVIDDYDMQITHVLRGEEHISNTPRQMMIYDAFNWNYPKFGHLTLIVDNTGKKLSKRSGNALffIEQYkkqgYLSQAIFNYIALLGWSPP 290
*********************************************************986541133332222233444444556666655 PP
>> TIGR00463 gltX_arch: glutamate--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.5 0.5 1.1e-40 1.3e-37 96 332 .. 5 256 .. 2 272 .. 0.78
2 ? -3.2 0.2 0.47 5.2e+02 40 69 .. 405 434 .. 372 443 .. 0.60
Alignments for each domain:
== domain 1 score: 127.5 bits; conditional E-value: 1.1e-40
TIGR00463 96 lrfaPnPsGplhiGharaailnqefakkYeGklilrldDtdPrrekeeaydsileDldlLGvkvDevvy...........qsdrielyYdYarklied 182
lr+aP P+G+lhiG+ r+a++n fak+Y+G +i+r++Dtd r+ a +s e+l++LG+ +De ++ qs++++ y + a++l+++
MMSYN1_0126 5 LRYAPSPTGFLHIGNTRTALMNYLFAKHYNGSFIVRIEDTDLTRNVDGAIESQFENLNWLGIFPDESIFnvgdqkygkymQSQKFDRYKQLAEQLVDQ 102
7*****************************************************************98533333334444899*************** PP
TIGR00463 183 GkaYvcdcsteefrel.rnkGvackrrdrsveenLevw.eemlegeeeeekvvvrvktDlkhknpairDfvifriektehprtGd....kykvYPlld 274
kaY c+c++ee+ + ++ + + + L + +++ + e++++ +r k+ + k +i D v + ++ + Gd k + +++
MMSYN1_0126 103 NKAYRCFCTSEELEKDyEEQTSKGIIATKYSQKCLFLTqDQIQKNLENKKEYSIRFKVPEN-KTWTINDIVRGDVSFDSKDL-GDfvilKSNGVATYN 198
************96541333333333444445556555344444444456789****9754.56777777777776665543.4411114445689** PP
TIGR00463 275 fsvaidDhllGvthvlrgkdyidnerkqeYiykylglelpevkhygrlkiedvraLst 332
f+v idD + +thvlrg ++i n+ +q iy + +++p++ h ++ + ++Ls
MMSYN1_0126 199 FAVVIDDYDMQITHVLRGEEHISNTPRQMMIYDAFNWNYPKFGHLTLIVDNTGKKLSK 256
*******************************************998775555555554 PP
== domain 2 score: -3.2 bits; conditional E-value: 0.47
TIGR00463 40 akevlelveevveevedlseeelkellkkl 69
k+v+e+ ++ +++++d + e++k+ +k+
MMSYN1_0126 405 YKNVVEIFKNQINDLKDWTIENIKQIIKNT 434
244444555555555555555555554444 PP
>> TIGR00440 glnS: glutamine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 58.8 0.8 9.5e-20 1.1e-16 2 126 .. 4 139 .. 3 288 .. 0.76
2 ? -3.3 0.1 0.62 7e+02 49 104 .. 372 428 .. 368 434 .. 0.50
Alignments for each domain:
== domain 1 score: 58.8 bits; conditional E-value: 9.5e-20
TIGR00440 2 rtrfppepnGylhiGhaksillnfGlakeykGtcnlrfddtnpvkedveyvesikrdvewlGfkwe......gkvry....ssdyfdelyalavelik 89
r r+ p p G+lhiG +++ l+n+ +ak+y+G +r++dt+ ++ +es ++++wlG+ ++ g+ +y s+ fd+ +la++l++
MMSYN1_0126 4 RLRYAPSPTGFLHIGNTRTALMNYLFAKHYNGSFIVRIEDTDLTRNVDGAIESQFENLNWLGIFPDesifnvGDQKYgkymQSQKFDRYKQLAEQLVD 101
679***********************************************************88762222224445533335899************* PP
TIGR00440 90 kGlayvdeltaeeireyrGiledpG.kaskyrdrsiee 126
+ +ay + +t+ee+ + ++ G a+ky ++++
MMSYN1_0126 102 QNKAYRCFCTSEELEKDYEEQTSKGiIATKYSQKCLFL 139
**************999888888886788888776543 PP
== domain 2 score: -3.3 bits; conditional E-value: 0.62
TIGR00440 49 veyvesikrdvewlGfkwegkvryssdyfdelyal..avelikkGlayvdeltaeeir 104
+ey e i +++ f+ + + + d +++l ++ ve+ k+ +++ t e+i+
MMSYN1_0126 372 LEYAEQINDHLDL-FFNKNTLDNNTIDVLNNLTNYknVVEIFKNQINDLKDWTIENIK 428
5666666555553.34444444455555555543311345555555555555555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (483 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 322 (0.0717469); expected 89.8 (0.02)
Passed bias filter: 113 (0.0251783); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.24
# Mc/sec: 2890.04
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0126 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0127 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0127.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0127/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0127 [L=404]
Description: HD domain protein 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.2e-05 21.0 0.7 0.00012 19.9 0.7 1.6 1 TIGR00277 HDIG: HDIG domain
0.00054 17.5 0.1 0.00099 16.7 0.1 1.4 1 TIGR01353 dGTP_triPase: putative dGTPase
------ inclusion threshold ------
0.037 11.5 0.1 0.063 10.8 0.1 1.3 1 TIGR03276 Phn-HD: phosphonate degradation operons associated
Domain annotation for each model (and alignments):
>> TIGR00277 HDIG: HDIG domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.9 0.7 8.1e-08 0.00012 6 64 .. 54 117 .. 50 133 .. 0.84
Alignments for each domain:
== domain 1 score: 19.9 bits; conditional E-value: 8.1e-08
TIGR00277 6 leHslevaklaealae.....elg.advelarrgaLlHDIGKaktregfiekviiesHvkvGaei 64
++H++ + ++++ ++ ++ +++l++ ++LlHDIG + ek + ++H++ ei
MMSYN1_0127 54 FSHCIGTYYILKEFFKnkaflKISsYEQKLVKIAGLLHDIGHGAFSH-TFEKITHKNHEQYTSEI 117
689999999999999988877666899***************98887.68899999998876666 PP
>> TIGR01353 dGTP_triPase: putative dGTPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.7 0.1 6.6e-07 0.00099 35 105 .. 49 114 .. 21 143 .. 0.70
Alignments for each domain:
== domain 1 score: 16.7 bits; conditional E-value: 6.6e-07
TIGR01353 35 fvRtRLtHSLEvaqvgrsiakeiksraeleleeklederlvetacLaHDiGnPPFGHaGEralnklmrekg 105
+ +tR H + + +i+ke +++ l+ ++ ++lv+ a+L HDiG+ F H E+ +k +++
MMSYN1_0127 49 ATHTRFSHCIGTY----YILKEFFKNKA-FLKISSYEQKLVKIAGLLHDIGHGAFSHTFEKITHKNHEQYT 114
5556666644433....35555545322.2333455799*******************9998888777775 PP
>> TIGR03276 Phn-HD: phosphonate degradation operons associated HDIG domain protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.8 0.1 4.2e-05 0.063 41 82 .. 78 117 .. 64 135 .. 0.74
Alignments for each domain:
== domain 1 score: 10.8 bits; conditional E-value: 4.2e-05
TIGR03276 41 gadeelv.vAalLHDiGHLleeegeeksargedvkHeelaady 82
+++++lv +A lLHDiGH ++ ++++ ++ +He+++ ++
MMSYN1_0127 78 SYEQKLVkIAGLLHDIGHGAFSH---TFEKITHKNHEQYTSEI 117
45555552799*******87744...44557788888877665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (404 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 244 (0.0543672); expected 89.8 (0.02)
Passed bias filter: 91 (0.0202763); expected 89.8 (0.02)
Passed Vit filter: 13 (0.00289661); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 2900.81
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0127 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0128 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0128.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0128/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0128 [L=142]
Description: RNA polymerase delta subunit 4=Probable Transcription
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-20 70.6 0.7 3.7e-20 69.9 0.7 1.3 1 TIGR04567 RNAP_delt_lowGC: DNA-directed RNA polymerase delta
Domain annotation for each model (and alignments):
>> TIGR04567 RNAP_delt_lowGC: DNA-directed RNA polymerase delta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.9 0.7 8.3e-24 3.7e-20 2 81 .. 3 82 .. 2 84 .. 0.94
Alignments for each domain:
== domain 1 score: 69.9 bits; conditional E-value: 8.3e-24
TIGR04567 2 elsmvdlayeiLkekkepmsfkdLlkev.aklkglseeeieeriaqlYtdlnlDgrFislgenkWgLrewypveeieeeve 81
++ ++dl+y +L+ +k+p s+++++k++ +++++++++ei ++ia+lY d++lD+rF+ + +n W+L ++ +ve+i+++++
MMSYN1_0128 3 KVRNLDLVYSYLQSTKTPSSLNEIWKSIsKDIISQKKDEI-SVIADLYGDMVLDNRFALTTDNLWALSSNSSVENIKKQYD 82
56799***********************888999999998.************************************9976 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (142 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 158 (0.035205); expected 89.8 (0.02)
Passed bias filter: 68 (0.0151515); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1019.59
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0128 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0129 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0129.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0129/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0129 [L=532]
Description: PyrG: CTP synthase 5=Equivalog Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7e-226 748.8 0.5 7.9e-226 748.6 0.5 1.0 1 TIGR00337 PyrG: CTP synthase
1.3e-07 28.9 0.1 0.0031 14.5 0.0 2.5 2 TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small
1.1e-05 22.9 0.0 0.00031 18.2 0.0 2.6 3 TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing),
0.0018 16.1 0.0 0.036 11.8 0.0 2.4 2 TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synth
Domain annotation for each model (and alignments):
>> TIGR00337 PyrG: CTP synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 748.6 0.5 7e-229 7.9e-226 3 526 .] 2 526 .. 1 526 [. 0.99
Alignments for each domain:
== domain 1 score: 748.6 bits; conditional E-value: 7e-229
TIGR00337 3 akyivvtGGvvsslGkGitaaslgrllkalglkvtiikidpylnidaGtlsPlehGevfvlddGaetdldlGhyerfldteltkennittGkiyskvl 100
ak+i+vtGGvvs+lGkGita+s+g+llka glkv + k+dpyln+d+Gt+sP++hGevfv++dG+etdldlGhyerf+d+eltk ++ t Gkiy +v+
MMSYN1_0129 2 AKFIFVTGGVVSGLGKGITASSIGALLKASGLKVFMQKFDPYLNVDPGTMSPYQHGEVFVTKDGGETDLDLGHYERFIDEELTKLSSTTSGKIYLSVI 99
79************************************************************************************************ PP
TIGR00337 101 ekerkGdylGktvqviPhitdeikdrikrvak.seadvviveiGGtvGdieslpfleairqlkkevgkenvlfihvtlvPyikaagelktkPtqhsvk 197
+ erkG Gkt+qv+Phitd+ik++++++a+ s+adv+i eiGGtvGdies+pf+eairq++ e gkenv+f+hv l+ +++a++e ktkP q+svk
MMSYN1_0129 100 QGERKGVNSGKTIQVVPHITDAIKQKVYQAAEqSQADVIISEIGGTVGDIESQPFIEAIRQIRLEQGKENVMFVHVVLLLWLAASKEYKTKPIQNSVK 197
*******************************9899*************************************************************** PP
TIGR00337 198 elrslGiqPdiiicrseeelkkelkekialfcdveeeavieakdvesiyevPlllkkeklddlllkrlkleekeadlseweelveklaeskeevkial 295
+ slGiqPd+i+crs+++ k++keki+lfc+v+ +++i+a d +siy+vPl l k++++d+++++l+l++k+ dls w+++ +k+++s+ee++i++
MMSYN1_0129 198 AMASLGIQPDVIVCRSDSSSPKDIKEKISLFCNVPITNIIDAIDQDSIYRVPLALAKQNIQDIIIEQLQLKAKNIDLSLWKQFNKKIDSSTEEIEISF 295
************************************************************************************************** PP
TIGR00337 296 vGkyvelkdaylsvkealkhaalkldlkvnikwidsedleeee.aelleevdgilvPGGfGerGveGkilaikyarenkiPflGiclGlqvaviefar 392
vGky+el+daylsv e+lk a+ +++ k++i+w+++++l+e + +e+l++ gilvPGGfG+rG+eG++la +yaren+iP+lGiclG+q+a+i ar
MMSYN1_0129 296 VGKYIELQDAYLSVLESLKIAGWEFNKKIKIRWVQADKLDESNyKEILKNSQGILVPGGFGKRGIEGMMLASRYARENDIPYLGICLGMQIATISIAR 393
****************************************999899**************************************************** PP
TIGR00337 393 nvlglkeanstefdeetkepvvallpeqkdkedlGgtmrlGayevklkeeslakklygkeevkerhrhryevnnelleeleekGlivsgksedgklve 490
++l+ ++a+stef+++t++p+ ++++ ++ +++Ggt+rlG++ +kl+++sl++kly+++ erhrhrye+nne++++le+ Gl++sg e+++lve
MMSYN1_0129 394 DLLNWTDADSTEFNKNTTHPIFDYIKGID-RDNIGGTLRLGTMVTKLEKDSLVSKLYNSDVALERHRHRYEFNNEYKKDLESVGLRFSGIYEEKNLVE 490
***************************98.99****************************************************************** PP
TIGR00337 491 iielkdhpffvatqfhPefksrveepsklflglvka 526
++e++ +ffva+qfhPef+sr+++p++lf g++ka
MMSYN1_0129 491 VVEMPSLKFFVASQFHPEFTSRPNKPTPLFRGFIKA 526
**********************************97 PP
>> TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.5 0.0 2.8e-06 0.0031 207 261 .. 337 389 .. 324 397 .. 0.85
2 ! 11.8 0.0 1.8e-05 0.02 288 359 .. 452 527 .. 441 529 .. 0.68
Alignments for each domain:
== domain 1 score: 14.5 bits; conditional E-value: 2.8e-06
TIGR01368 207 tsaeeikklnpdgillsnGPGdPaaveeaietvkklleakiPifGIclGhqllal 261
++++ei k + +gil+ G G + +e ++ + + e++iP +GIclG q+ +
MMSYN1_0129 337 SNYKEILKNS-QGILVPGGFGK-RGIEGMMLASRYARENDIPYLGICLGMQIATI 389
5678888877.9*******998.6788888888889999************9765 PP
== domain 2 score: 11.8 bits; conditional E-value: 1.8e-05
TIGR01368 288 rveitsqNHgyavdeeslke.eelevthvnlnD..gtveglehkelpvf.svQyHPeaspGphdteylFdefveli 359
v + + H y ++e k e++ ++ +++ + ve +e+ +l++f + Q+HPe ++ p+ + lF+ f+++i
MMSYN1_0129 452 DVALERHRHRYEFNNEYKKDlESVGLRFSGIYEekNLVEVVEMPSLKFFvASQFHPEFTSRPNKPTPLFRGFIKAI 527
5556666666666666522213344455555541145788999888876378*********************987 PP
>> TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.9 0.0 0.78 8.8e+02 83 140 .. 138 197 .. 135 203 .. 0.63
2 ! 18.2 0.0 2.7e-07 0.00031 36 85 .. 341 389 .. 321 412 .. 0.82
3 ? 1.6 0.0 0.032 36 158 186 .. 500 529 .. 484 531 .. 0.72
Alignments for each domain:
== domain 1 score: -2.9 bits; conditional E-value: 0.78
TIGR00888 83 lakalGgeveraekreygka..elevldedelfkglekelkvWmshgDkvkelPegfkvl 140
+ + +Gg+v+ e++ + +a ++++++ +e + ++ l +W + + k+ P + +v
MMSYN1_0129 138 IISEIGGTVGDIESQPFIEAirQIRLEQGKENVMFVHVVLLLWLAASKEYKTKPIQNSVK 197
667789999999999887653355555555555555556777776666666666555555 PP
== domain 2 score: 18.2 bits; conditional E-value: 2.7e-07
TIGR00888 36 eikevepkgiilsGgPesvkaenaekvdekifelgvPvlGiCyGmqllak 85
ei ++ +gi++ Gg e+++ ++++ e ++P lGiC+Gmq+ +
MMSYN1_0129 341 EIL-KNSQGILVPGGFGKRGIEGMMLASRYARENDIPYLGICLGMQIATI 389
443.4679**************************************8665 PP
== domain 3 score: 1.6 bits; conditional E-value: 0.032
TIGR00888 158 lyGvqfhPevth.tekGkellenfvkdvck 186
+ qfhPe t +k + l++ f+k +++
MMSYN1_0129 500 FVASQFHPEFTSrPNKPTPLFRGFIKAIVE 529
4567*****985156778899999988876 PP
>> TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.8 0.0 3.2e-05 0.036 62 84 .. 365 387 .. 330 414 .. 0.75
2 ? 1.4 0.0 0.049 55 172 183 .. 498 509 .. 460 523 .. 0.84
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 3.2e-05
TIGR01855 62 llaekvvkkkkpvlgiClGmQll 84
l ++ +++++ p lgiClGmQ+
MMSYN1_0129 365 LASRYARENDIPYLGICLGMQIA 387
44566789999**********95 PP
== domain 2 score: 1.4 bits; conditional E-value: 0.049
TIGR01855 172 dnivgvQFHPEk 183
+ +v+ QFHPE
MMSYN1_0129 498 KFFVASQFHPEF 509
457999****95 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (532 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 261 (0.0581551); expected 89.8 (0.02)
Passed bias filter: 162 (0.0360963); expected 89.8 (0.02)
Passed Vit filter: 15 (0.00334225); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.22
# Mc/sec: 3472.61
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0129 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0131 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0131.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0131/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0131 [L=297]
Description: fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II 5=Equivalog Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-111 370.9 0.0 1.4e-111 370.7 0.0 1.0 1 TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase,
1e-97 324.9 0.0 1.3e-97 324.7 0.0 1.0 1 TIGR00167 cbbA: ketose-bisphosphate aldolase
4.2e-70 234.0 0.0 4.8e-70 233.8 0.0 1.0 1 TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisph
3.5e-40 136.1 0.8 2.1e-31 107.3 0.2 2.4 2 TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, c
2e-29 100.7 3.1 2.2e-27 93.9 3.1 3.2 1 TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, c
0.00042 17.7 0.0 0.00087 16.7 0.0 1.5 1 TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
Domain annotation for each model (and alignments):
>> TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 370.7 0.0 1.8e-114 1.4e-111 1 282 [] 9 296 .. 9 296 .. 0.98
Alignments for each domain:
== domain 1 score: 370.7 bits; conditional E-value: 1.8e-114
TIGR01859 1 lvkakellekakkekYavgafninnlellqaileaaeeeksPvivqvsegavkYlggikvvvalvkalieklsi.vPvalhLDhGssyescikaikaG 97
lv+ak+++ +a++++Ya+g+fninnle+++aileaae++k+Pvi+++sega+kY+gg+++vv++v+ l++ l+i vPvalhLDhG+s+e + k+i aG
MMSYN1_0131 9 LVNAKQMVIDAHRHRYAIGHFNINNLEWTKAILEAAEASKTPVIIATSEGAIKYMGGVNTVVGMVNGLLDYLNItVPVALHLDHGQSLEMAKKCILAG 106
79************************************************************************************************ PP
TIGR01859 98 fssvmiDashlpleenlketkkvveiahakgvsveaelGklgGieddvvekeaeladideakklvketgvDaLaiaiGtshGkykge.pkldferlke 194
+ssvm+D+sh+p+ enl++tk++++ a++ vsveae+G++gG+ed+v++ ++el d+ +a+++ k tg+ +La++iG++hGky++ ++l f++l++
MMSYN1_0131 107 YSSVMFDGSHFPYAENLEMTKELIKFAEEYEVSVEAEIGSIGGEEDGVIG-QGELGDPLQAEEISK-TGITMLAAGIGNIHGKYPSWwQSLSFDTLER 202
**************************************************.*************99.******************9889********* PP
TIGR01859 195 ikkllnlPlvlhGasGipeeqlkkaiklgiakvnidtdlrlaftaairkvle......ekkdeydpRkilaparealkevvkekikvlgsagka 282
++k+ ++P+vlhG+sGip+eq+kkai++giak+n++t+l+laf +a+rk++e + k+ +dpRk+l+p+ +alk + e + +g +gka
MMSYN1_0131 203 LQKACKMPMVLHGGSGIPQEQVKKAISMGIAKINVNTELQLAFRDATRKYVEerkdldDAKKGFDPRKLLKPGYDALKTTFLELTNWFGCQGKA 296
***************************************************988888777788****************************997 PP
>> TIGR00167 cbbA: ketose-bisphosphate aldolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 324.7 0.0 1.7e-100 1.3e-97 3 290 .] 9 296 .. 8 296 .. 0.98
Alignments for each domain:
== domain 1 score: 324.7 bits; conditional E-value: 1.7e-100
TIGR00167 3 lvdvkellekakeegyaipaiNvvnlesikavleaaeeaksPviiqasegaakyiaGleaiaalvkalveaekytvPvvlHlDHgaseesiaeavkag 100
lv+ k+++ +a++++yai+++N++nle++ka+leaae +k+Pvii++sega+ky++G+++++++v++l++ ++tvPv+lHlDHg+s e ++ + ag
MMSYN1_0131 9 LVNAKQMVIDAHRHRYAIGHFNINNLEWTKAILEAAEASKTPVIIATSEGAIKYMGGVNTVVGMVNGLLDYLNITVPVALHLDHGQSLEMAKKCILAG 106
6899********************************************************************************************** PP
TIGR00167 101 fsSvMiDaSeepfeeNieltkkvvelahkvgvsvEaElGilggeedgvdnskadesalytdpeeakelvkksqvdalAaaiGnvHGvYkkepkkLkfe 198
sSvM+D+S++p +eN+e+tk+++++a++ +vsvEaE+G +ggeedg + + ++ dp +a+e++k +++ +lAa+iGn+HG Y + +++L+f+
MMSYN1_0131 107 YSSVMFDGSHFPYAENLEMTKELIKFAEEYEVSVEAEIGSIGGEEDG-----VIGQGELGDPLQAEEISK-TGITMLAAGIGNIHGKYPSWWQSLSFD 198
**********************************************6.....56999**********986.67************************* PP
TIGR00167 199 rleeiqklvslplVlHGgsgipeeeikkaiklGvvKvNidTdlqlAfaeavreylkenkde......ydprkylkeaekamkevvkekikelgsanka 290
le+ qk+ ++p+VlHGgsgip+e++kkai++G++K+N++T+lqlAf +a+r+y++e kd +dprk+lk++ +a+k + e + +g+++ka
MMSYN1_0131 199 TLERLQKACKMPMVLHGGSGIPQEQVKKAISMGIAKINVNTELQLAFRDATRKYVEERKDLddakkgFDPRKLLKPGYDALKTTFLELTNWFGCQGKA 296
************************************************************99********************************9985 PP
>> TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 233.8 0.0 6.4e-73 4.8e-70 2 282 .] 10 296 .. 9 296 .. 0.92
Alignments for each domain:
== domain 1 score: 233.8 bits; conditional E-value: 6.4e-73
TIGR01858 2 vstkellkeaqkgGyavpafnihnletlqvvvetaaelkspvilaGtpgtfkyag.teelvalvsaaak..kyelplalhldhheslddikqkvaaGv 96
v +k+++ +a + ya+ fni nle ++++e+a k+pvi+a + g++ky+g ++ +v +v+ + ++p+alhldh +sl+ k+ + aG
MMSYN1_0131 10 VNAKQMVIDAHRHRYAIGHFNINNLEWTKAILEAAEASKTPVIIATSEGAIKYMGgVNTVVGMVNGLLDylNITVPVALHLDHGQSLEMAKKCILAGY 107
789**************************************************963789999**99876124568*********************** PP
TIGR01858 97 ksvmidashlsfeenvklvkevvdfchrfdasveaelGrlgGveddlsvdeedalytdpdeakefveatGvdslavaiGtahGlykea.pkldfdrla 193
svm d+sh++++en++++ke+++f+ +++sveae+G +gG ed + ++ + dp +a+e + +tG+ la iG hG y + +l fd l+
MMSYN1_0131 108 SSVMFDGSHFPYAENLEMTKELIKFAEEYEVSVEAEIGSIGGEEDGVIG---QGELGDPLQAEE-ISKTGITMLAAGIGNIHGKYPSWwQSLSFDTLE 201
*********************************************9975...56689****988.789*****************875278******* PP
TIGR01858 194 kirekvdvplvlhGasdvpdelvrrtielGiskvnvatelkiafsdalkayfien......peandprkylksakeamkkvvekkiavcGsagka 282
++++ ++p+vlhG+s++p+e+v+++i +Gi+k+nv tel+ af da ++y+ e+ +++ dprk lk++ +a+k + + G++gka
MMSYN1_0131 202 RLQKACKMPMVLHGGSGIPQEQVKKAISMGIAKINVNTELQLAFRDATRKYVEERkdlddaKKGFDPRKLLKPGYDALKTTFLELTNWFGCQGKA 296
***************************************************988622222256789*************************9985 PP
>> TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 107.3 0.2 2.8e-34 2.1e-31 2 238 .. 10 222 .. 9 224 .. 0.89
2 ! 34.1 0.0 4.8e-12 3.6e-09 255 327 .. 218 296 .. 214 297 .] 0.85
Alignments for each domain:
== domain 1 score: 107.3 bits; conditional E-value: 2.8e-34
TIGR01521 2 islrqlldhaaergygvpafnvnnleqilaimeaadktdspvilqasrgarsyage.vllrklvlaaveeyp.dipvvlhqdhgnspatclsaiqlgf 97
++ +q++ a + y + fn+nnle ++ai+eaa+++ +pvi+ +s ga +y g + + +v ++ + +pv+lh dhg+s ++ +++i g+
MMSYN1_0131 10 VNAKQMVIDAHRHRYAIGHFNINNLEWTKAILEAAEASKTPVIIATSEGAIKYMGGvNTVVGMVNGLLDYLNiTVPVALHLDHGQSLEMAKKCILAGY 107
6778999999*******************************************8752678899999998764379*********************** PP
TIGR01521 98 tsvmmdgslkedaktpadydynvsvtaevvklahavgasvegelgclgsletgkgeaedghgfegaldrsqlltdpeeaaefvkktkvdalavaigts 195
+svm+dgs y n+++t+e +k+a +sve e+g +g ++edg+ +g l dp +a e ++kt++ la ig
MMSYN1_0131 108 SSVMFDGSH-------FPYAENLEMTKELIKFAEEYEVSVEAEIGSIG-------GEEDGVIGQGEL------GDPLQAEE-ISKTGITMLAAGIGNI 184
*******95.......45889***********************9987.......688998888875......79988765.799************* PP
TIGR01521 196 hgaykftrkptgevlaidrieeiherlpdthlvmhgsssvpqe 238
hg y + l++d +e++ + + +v+hg s +pqe
MMSYN1_0131 185 HGKYP----SWWQSLSFDTLERLQKA-CKMPMVLHGGSGIPQE 222
**994....557899*****999765.67889**********9 PP
== domain 2 score: 34.1 bits; conditional E-value: 4.8e-12
TIGR01521 255 gvpveeivkgikfgvrkvnidtdlrlaataalrrva......akdpsefdprkflkkaveamkdvckaryeafgtagna 327
g+p e+++k i +g+ k+n++t+l+la a r+ + ++ ++ fdprk lk+ +a+k + + fg g a
MMSYN1_0131 218 GIPQEQVKKAISMGIAKINVNTELQLAFRDATRKYVeerkdlDDAKKGFDPRKLLKPGYDALKTTFLELTNWFGCQGKA 296
9*****************************999876111111456789***************9999999999988876 PP
>> TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 93.9 3.1 2.9e-30 2.2e-27 16 334 .. 13 273 .. 7 293 .. 0.82
Alignments for each domain:
== domain 1 score: 93.9 bits; conditional E-value: 2.9e-30
TIGR01520 16 aklfevakeekfaiPainvvssetvnaaleaardakspiilqfsnggaafiaGkGvkdeaekaasiaGaiaaa.eyvrsiaekygvpvvlhtdhCakk 112
+++ a+++++ai n+ e a+leaa+ +k+p+i+ +s+g+ +++ G ++ ++G + + y++ vpv+lh dh
MMSYN1_0131 13 KQMVIDAHRHRYAIGHFNINNLEWTKAILEAAEASKTPVIIATSEGAIKYMGGV--NT-------VVGMVNGLlDYLN-----ITVPVALHLDHGQS- 95
56778899******************************************9874..43.......6666665414443.....479********753. PP
TIGR01520 113 llpyvdglleadekyfkkegkPlfsshmldlseepieenieiakkylkrmakiklileieiGitGGeedGvdneeadkeelytkPedvekvyeelski 210
l e+ +k + + +ss m+d+s p en+e++k+++k + + ++ +e eiG +GGeedGv + + +P + e++ +
MMSYN1_0131 96 -L-------EMAKKCILA----GYSSVMFDGSHFPYAENLEMTKELIKFAEEYEVSVEAEIGSIGGEEDGVIGQGE-----LGDPLQAEEISK----- 171
.3.......455555544....49***********************************************98877.....455555444433..... PP
TIGR01520 211 spkfsiaaafGnvhGvykpGnvklrPdiladgqeyvaeklglkeakplsfvfhGGsGstkeeikealsyGvvkvnvdtdtqyaalegildyvlknedy 308
+ ++aa+ Gn+hG y + l d l+ q+ +k + +v+hGGsG +e++k+a+s G+ k+nv+t++q a+ + ++yv +++d
MMSYN1_0131 172 TGITMLAAGIGNIHGKYPSWWQSLSFDTLERLQKA------CK----MPMVLHGGSGIPQEQVKKAISMGIAKINVNTELQLAFRDATRKYVEERKDL 259
456689***********888888999988887764......33....668******************************************999885 PP
TIGR01520 309 lqsqvGnpkgeekpnkkvydPrvwlr 334
kk +dPr l+
MMSYN1_0131 260 DDA------------KKGFDPRKLLK 273
444............44444444444 PP
>> TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.7 0.0 1.2e-06 0.00087 62 106 .. 196 241 .. 185 249 .. 0.86
Alignments for each domain:
== domain 1 score: 16.7 bits; conditional E-value: 1.2e-06
TIGR03572 62 llelieklaeevfvPltvgGGik.sledvkkllkaGadKvsintaa 106
++++e+l + + +P+ + GG e+vkk +++G+ K+ +nt++
MMSYN1_0131 196 SFDTLERLQKACKMPMVLHGGSGiPQEQVKKAISMGIAKINVNTEL 241
6899***********998776541469*****************86 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (297 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 187 (0.0416667); expected 89.8 (0.02)
Passed bias filter: 157 (0.0349822); expected 89.8 (0.02)
Passed Vit filter: 13 (0.00289661); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.22
# Mc/sec: 1938.66
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0131 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0132 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0132.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0132/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0132 [L=353]
Description: ATPase, AAA family 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.5e-15 53.3 0.3 4.7e-15 52.9 0.3 1.2 1 TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
2.9e-12 44.3 1.2 3.6e-12 44.1 0.3 1.6 2 TIGR01242 26Sp45: 26S proteasome subunit P45 family
7.1e-11 39.5 0.0 9.6e-11 39.0 0.0 1.1 1 TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
2.6e-07 27.9 0.9 6.5e-07 26.6 0.7 1.7 1 TIGR02881 spore_V_K: stage V sporulation protein K
1.1e-06 25.5 0.2 1.5e-06 25.0 0.2 1.1 1 TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
3.5e-06 23.5 1.5 0.00024 17.4 0.0 2.3 2 TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subun
2.8e-05 20.6 0.6 0.069 9.4 0.0 2.1 2 TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein Cl
0.00011 19.1 0.9 0.13 9.0 0.1 2.3 2 TIGR02928 TIGR02928: orc1/cdc6 family replication initiation
0.00026 17.5 0.2 0.026 10.9 0.0 2.3 2 TIGR00763 lon: endopeptidase La
0.00034 17.9 0.1 0.00034 17.9 0.1 2.1 2 TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and
0.00036 17.9 0.3 0.0049 14.1 0.3 2.3 1 TIGR02880 cbbX_cfxQ: CbbX protein
0.00058 16.9 1.0 0.015 12.3 1.0 2.7 1 TIGR00635 ruvB: Holliday junction DNA helicase RuvB
0.0023 15.2 0.0 0.0083 13.3 0.0 1.9 2 TIGR00064 ftsY: signal recognition particle-docking protein
0.0049 14.0 0.0 0.01 13.0 0.0 1.5 1 TIGR01650 PD_CobS: cobaltochelatase, CobS subunit
Domain annotation for each model (and alignments):
>> TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.9 0.3 1.5e-17 4.7e-15 490 636 .. 107 252 .. 84 273 .. 0.90
Alignments for each domain:
== domain 1 score: 52.9 bits; conditional E-value: 1.5e-17
TIGR01243 490 vllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaa.p..aiifldeidaiapargadlseavtdrivnqllteldg 584
l+ g pgtgkt k +a + n+ v +++ +g+s k+i e+f+k q+ p ii +deida+a r ++ + + r+ ++ ld
MMSYN1_0132 107 FLFQGFPGTGKTETVKQIARILNRNLFMVDFNNLIDSHLGQSSKNIAELFQKINQTPnPkkIIICFDEIDALALDRTNKTDLREMGRVTTAVFQGLDK 204
567799************************************************98423337999****************************99999 PP
TIGR01243 585 leensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtr 636
l+ +d++v a+tn +d al+r r+d +i ++ l+i i +
MMSYN1_0132 205 LD--TDIIVFATTNLFKHFDKALIR--RFDLVIDFNRYTKKDMLDIAEIILK 252
86..69******************9..9*****9999999999998877554 PP
>> TIGR01242 26Sp45: 26S proteasome subunit P45 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.4 0.0 1.5 4.7e+02 11 42 .. 7 38 .. 2 57 .. 0.76
2 ! 44.1 0.3 1.1e-14 3.6e-12 159 308 .. 107 253 .. 98 314 .. 0.81
Alignments for each domain:
== domain 1 score: -2.4 bits; conditional E-value: 1.5
TIGR01242 11 ledekkllekekirlereverlrselerlrsp 42
l+ + ++e++ i++++e +++ +e+ ++
MMSYN1_0132 7 LNLIRYHIEENDISFRKEARIIAEEFYKMGDD 38
55556789999999999999999999988655 PP
== domain 2 score: 44.1 bits; conditional E-value: 1.1e-14
TIGR01242 159 vllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfkla.kekaps..iifideidaiaakrldsstsGdrevqrtllqllael 253
l+ G pGtGkt k +a+ n + v +l+ ++G+ ++ + e+f+ + p ii deida+a r++++ re+ r ++ l
MMSYN1_0132 107 FLFQGFPGTGKTETVKQIARILNRNLFMVDFNNLIDSHLGQSSKNIAELFQKInQTPNPKkiIICFDEIDALALDRTNKT--DLREMGRVTTAVFQGL 202
5789**********************************************8651555664337778**********9976..4699999999888888 PP
TIGR01242 254 dGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrk 308
d +d+ ++ v a+tn +d al+r rfd +i+ +++ l+i +i ++
MMSYN1_0132 203 DKLDT--DIIVFATTNLFKHFDKALIR--RFDLVIDFNRYTKKDMLDIAEIILKH 253
88875..899****************9..9*******999999999887664332 PP
>> TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.0 0.0 3e-13 9.6e-11 92 241 .. 107 253 .. 100 304 .. 0.75
Alignments for each domain:
== domain 1 score: 39.0 bits; conditional E-value: 3e-13
TIGR01241 92 vllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakkn.aP..ciifiDeiDavGrkrgaglgggndere..qtLnqlLv 184
l+ G PGtGkt k +a ++ +f + ++++ G ++ + +lf++ ++ P ii DeiDa+ +r++ d re + ++
MMSYN1_0132 107 FLFQGFPGTGKTETVKQIARILNRNLFMVDFNNLIDSHLGQSSKNIAELFQKINQTpNPkkIIICFDEIDALALDRTNK----TDLREmgRVTTAVFQ 200
5889**********************************************9977652443358889**********995....344441033334444 PP
TIGR01241 185 emDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakk 241
+D + ++++iv+a+tn +DkaL+r rfD + ++ k+ +i ++ +k+
MMSYN1_0132 201 GLDKL--DTDIIVFATTNLFKHFDKALIR--RFDLVIDFNRYTKKDMLDIAEIILKH 253
44443..467*******************..9**99998876666555555544443 PP
>> TIGR02881 spore_V_K: stage V sporulation protein K
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.6 0.7 2e-09 6.5e-07 36 197 .. 98 257 .. 87 294 .. 0.76
Alignments for each domain:
== domain 1 score: 26.6 bits; conditional E-value: 2e-09
TIGR02881 36 lkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGG......vlfide..ayslarGGekdf 125
+ ++++ + +f+G PGtGkt + +a++++ +l v+ +l+ ++G++++++ e+ +k ++ de a +l r + d+
MMSYN1_0132 98 ISKNRKINKFLFQGFPGTGKTETVKQIARILNR-------NLFMVDFNNLIDSHLGQSSKNIAELFQKINQTpnpkkiIICFDEidALALDRTNKTDL 188
5667788899************9999*998753.......4556777788888888888888887776543222223277789844667779999898 PP
TIGR02881 126 Gke.aidtlvkemedkreelvlilaGysdemdyflslnPGlksrfpisldfpdytveelleiakkmveereyk 197
+ t v + dk + ++++a + f +++ l rf + +df+ yt +++l+ia+ ++++ k
MMSYN1_0132 189 REMgRVTTAVFQGLDKLDTDIIVFAT----TNLFKHFDKALIRRFDLVIDFNRYTKKDMLDIAEIILKHYIKK 257
55325778888888888888888886....578999999*************************999876544 PP
>> TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.0 0.2 4.7e-09 1.5e-06 311 465 .. 103 252 .. 96 287 .. 0.77
Alignments for each domain:
== domain 1 score: 25.0 bits; conditional E-value: 4.7e-09
TIGR03922 311 rskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg......vlFlDEayaLvekrdgakddfGlea 402
+ + l+ G PGtGkt + + +a+i+ + ++ v ++li ++g+s ++ el +k + ++ +DE+ aL r +++d +
MMSYN1_0132 103 KINKFLFQGFPGTGKTETVKQIARIL-------NRNLFMVDFNNLIDSHLGQSSKNIAELFQKINQTpnpkkiIICFDEIDALALDRTNKTDLREMGR 193
56889******************997.......4678889999999999999999999997765432222333899********99999999877777 PP
TIGR03922 403 idtLLar.lEndRdrlvviiAGYekdlDklLevneGLrsRFtrkieFesYspdElveiakrmae 465
+ t + + l+ +++v+ + + + ++ L +RF +i+F+ Y+ +++ +ia+ + +
MMSYN1_0132 194 VTTAVFQgLDKLDTDIIVFAT-----TNLFKHFDKALIRRFDLVIDFNRYTKKDMLDIAEIILK 252
777555415544444444432.....233445556799*********************98765 PP
>> TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.4 0.0 7.4e-07 0.00024 482 527 .. 99 144 .. 85 152 .. 0.87
2 ! 4.9 0.8 0.0046 1.5 332 388 .. 221 279 .. 146 289 .. 0.82
Alignments for each domain:
== domain 1 score: 17.4 bits; conditional E-value: 7.4e-07
TIGR02639 482 eenkPvgsflfvGptGvGktelakqLaeelgvellrfDmseymekh 527
++n+ + flf+G G Gkte kq+a++l+ +l D + + h
MMSYN1_0132 99 SKNRKINKFLFQGFPGTGKTETVKQIARILNRNLFMVDFNNLIDSH 144
578889****************************999998877766 PP
== domain 2 score: 4.9 bits; conditional E-value: 0.0046
TIGR02639 332 kdkaLsrrfq.kidveePskeetvkilkglkeky.eefhkvkysdealeaavelsakyi 388
dkaL rrf+ id + +k++ ++i + + ++y + ++k + ++ ++ls+ i
MMSYN1_0132 221 FDKALIRRFDlVIDFNRYTKKDMLDIAEIILKHYiKKVDNIKSELRLFRKIISLSEELI 279
37899999983579999999999999988777773567778877777777777777665 PP
>> TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.4 0.0 0.00021 0.069 591 619 .. 100 128 .. 85 145 .. 0.74
2 ! 9.3 0.3 0.00022 0.071 740 796 .. 215 271 .. 197 282 .. 0.88
Alignments for each domain:
== domain 1 score: 9.4 bits; conditional E-value: 0.00021
TIGR03346 591 PnrPigsflflGptGvGktelakalaefl 619
nr i flf G G Gkte++k +a++l
MMSYN1_0132 100 KNRKINKFLFQGFPGTGKTETVKQIARIL 128
47889999999999999999999999877 PP
== domain 2 score: 9.3 bits; conditional E-value: 0.00022
TIGR03346 740 ealraefrPeflnrideivvfkalekeeikeiveiqlerlrkrlaerklelelsdaa 796
+l ++f ++ r d ++ f++ +k+++ +i+ei l++ k++++ k el+l +
MMSYN1_0132 215 TNLFKHFDKALIRRFDLVIDFNRYTKKDMLDIAEIILKHYIKKVDNIKSELRLFRKI 271
567899****************************************99999987665 PP
>> TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.0 0.1 0.00041 0.13 26 67 .. 90 131 .. 87 140 .. 0.86
2 ! 8.5 0.1 0.00058 0.19 110 159 .. 146 197 .. 135 249 .. 0.63
Alignments for each domain:
== domain 1 score: 9.0 bits; conditional E-value: 0.00041
TIGR02928 26 elakalkpilrgsrpsnvliyGktGtGKtavtkkvlkeleea 67
e++ ++ i ++++ ++ l G +GtGKt ++k++ + l+++
MMSYN1_0132 90 EIKGVINAISKNRKINKFLFQGFPGTGKTETVKQIARILNRN 131
566677888889999999*****************9999875 PP
== domain 2 score: 8.5 bits; conditional E-value: 0.00058
TIGR02928 110 Glstkevfeelvkele..eredsliivLDEiDklv.kkeadelLyeLsraeen 159
G s+k++ el+++++ + + +ii DEiD l +++++ L e+ r++++
MMSYN1_0132 146 GQSSKNIA-ELFQKINqtPNPKKIIICFDEIDALAlDRTNKTDLREMGRVTTA 197
66666554.555555523456899**********9877777779999888544 PP
>> TIGR00763 lon: endopeptidase La
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.9 0.0 8e-05 0.026 356 384 .. 107 135 .. 94 144 .. 0.82
2 ! 4.4 0.2 0.0076 2.4 469 521 .. 208 261 .. 202 321 .. 0.85
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 8e-05
TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrl 384
+ + G PG GKt k iA+ lnr+++ +
MMSYN1_0132 107 FLFQGFPGTGKTETVKQIARILNRNLFMV 135
689**********************9976 PP
== domain 2 score: 4.4 bits; conditional E-value: 0.0076
TIGR00763 469 kVlfvataNsidtiPepLldRmE.vielsgYveeeKleiakkyLipkaleeagl 521
+++ +at+N ++ ++L R + vi+ Y++++ l+ia+ L ++ ++
MMSYN1_0132 208 DIIVFATTNLFKHFDKALIRRFDlVIDFNRYTKKDMLDIAEIILKHYIKKVDNI 261
678899****************9579************9997665554444444 PP
>> TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.9 0.1 1.1e-06 0.00034 26 62 .. 94 130 .. 76 139 .. 0.89
2 ? -1.1 0.4 0.63 2e+02 216 216 .. 265 265 .. 202 347 .. 0.51
Alignments for each domain:
== domain 1 score: 17.9 bits; conditional E-value: 1.1e-06
TIGR02397 26 LknaikknkiahayLfsGprGvGKTsiArilAkalNC 62
+ nai+kn+ + +Lf+G G+GKT + + +A+ lN
MMSYN1_0132 94 VINAISKNRKINKFLFQGFPGTGKTETVKQIARILNR 130
5699999999999**************9999999995 PP
== domain 2 score: -1.1 bits; conditional E-value: 0.63
TIGR02397 216 l 216
l
MMSYN1_0132 265 L 265
2 PP
>> TIGR02880 cbbX_cfxQ: CbbX protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.1 0.3 1.5e-05 0.0049 61 217 .. 107 260 .. 89 290 .. 0.69
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 1.5e-05
TIGR02880 61 msftgnpgtgkttvalrmakilhrlgyvrkghlvsvtrddlvgqyightapktkevlkramgg......vlfide..ayylyrpdne..rdygqeaie 148
+ f g pgtgkt ++a+il r l v ++l+ ++g ++ e++++ ++ de a l r + r+ g+ +
MMSYN1_0132 107 FLFQGFPGTGKTETVKQIARILNRN-------LFMVDFNNLIDSHLGQSSKNIAELFQKINQTpnpkkiIICFDEidALALDRTNKTdlREMGRVT-T 196
6799******************985.......4456667777777777777777777665432222222666787334555555432226667655.4 PP
TIGR02880 149 illqvmenqrddlvvilagykdrmdsffesnpglssrvahhvdfpdyseeellaiaellleeqqyrlsa 217
++q ++ +d++v +a + f + + l r +df y+++++l iae++l++ ++++
MMSYN1_0132 197 AVFQGLDKLDTDIIV-FAT----TNLFKHFDKALIRRFDLVIDFNRYTKKDMLDIAEIILKHYIKKVDN 260
567888888788765.554....2344455678999************************998777765 PP
>> TIGR00635 ruvB: Holliday junction DNA helicase RuvB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.3 1.0 4.7e-05 0.015 13 165 .. 88 244 .. 84 343 .. 0.67
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 4.7e-05
TIGR00635 13 keklqlfikaakkrkealdhvllyGPPGlGkttlakiiakelgvklkitsgpal......ekpgDlaailtalee.....gdvlfiDeihrlskavee 99
e+++ +i+a +++ +++ l+ G PG Gkt k ia+ l+ +l ++ +l + ++++a ++ ++++ + ++ Dei +l+ +
MMSYN1_0132 88 SEEIKGVINAI-SKNRKINKFLFQGFPGTGKTETVKQIARILNRNLFMVDFNNLidshlgQSSKNIAELFQKINQtpnpkKIIICFDEIDALALDRTN 184
56666677765.4567899*************999999999999987765444322222244567777777776422221446667777777644332 PP
TIGR00635 100 llypamedfkldivigkgpaaksvrldlapftlvGattra.GkltsPLrdrfgiverlefYseeele 165
e ++ + +g +l+ +v att + + L rf +v ++ Y+++++
MMSYN1_0132 185 KT-DLREMGRVTTAVFQGLD------KLDTDIIVFATTNLfKHFDKALIRRFDLVIDFNRYTKKDML 244
21.11222233333333332......23333345555554134556666666666666666666654 PP
>> TIGR00064 ftsY: signal recognition particle-docking protein FtsY
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.3 0.0 2.6e-05 0.0083 65 105 .. 90 130 .. 67 135 .. 0.83
2 ? -2.6 0.0 1.9 6e+02 205 223 .. 141 159 .. 140 164 .. 0.85
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 2.6e-05
TIGR00064 65 etklelkelkeekkpnvillvGvNGvGKTttiaKlakllkk 105
e k ++++++++k n +l+ G G+GKT t+ +a++l++
MMSYN1_0132 90 EIKGVINAISKNRKINKFLFQGFPGTGKTETVKQIARILNR 130
4444457889999***********************99876 PP
== domain 2 score: -2.6 bits; conditional E-value: 1.9
TIGR00064 205 ldattGqnaleqakvFnea 223
+d+ Gq++ + a+ F+++
MMSYN1_0132 141 IDSHLGQSSKNIAELFQKI 159
7999999999999999986 PP
>> TIGR01650 PD_CobS: cobaltochelatase, CobS subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.0 0.0 3.1e-05 0.01 58 147 .. 95 179 .. 85 224 .. 0.75
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 3.1e-05
TIGR01650 58 lagfaydrrv...mvsgyhgtgksthieqvaarlnwplvrvnldshvsridlvgkdaivlkdgkqitefregilpwalqrnvalvfdeydagr 147
+ ++ +r++ + +g+ gtgk+ ++q+a ln l v+++ + d+ + + k+i+e+ + i +++ ++fde da
MMSYN1_0132 95 INAISKNRKInkfLFQGFPGTGKTETVKQIARILNRNLFMVDFNNLI--------DSHLGQSSKNIAELFQKINQTPNPKKIIICFDEIDALA 179
555556665433379**********************9999887644........34455667888888888888888888888888888865 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (353 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 265 (0.0590463); expected 89.8 (0.02)
Passed bias filter: 127 (0.0282977); expected 89.8 (0.02)
Passed Vit filter: 29 (0.00646168); expected 4.5 (0.001)
Passed Fwd filter: 14 (0.00311943); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 14 [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.23
# Mc/sec: 2204.01
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0132 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0133 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0133.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0133/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0133 [L=757]
Description: peptidase, S8/S53 family 2=Generic Proteolysis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.9e-09 32.8 0.0 2.3e-08 31.5 0.0 1.6 2 TIGR03921 T7SS_mycosin: type VII secretion-associated serine
Domain annotation for each model (and alignments):
>> TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.9 0.0 0.14 6.5e+02 51 61 .. 320 330 .. 300 335 .. 0.81
2 ! 31.5 0.0 5.1e-12 2.3e-08 113 279 .. 375 545 .. 357 561 .. 0.71
Alignments for each domain:
== domain 1 score: -2.9 bits; conditional E-value: 0.14
TIGR03921 51 ghGTlvAglIA 61
hGT v ++I
MMSYN1_0133 320 QHGTQVSSIIV 330
6********95 PP
== domain 2 score: 31.5 bits; conditional E-value: 5.1e-12
TIGR03921 113 dsgAkVINiSevaclsaksaadeselgaAvky.alekdvvvvAaagnegqdgsktvvyPAaypgVlaVgsidrsgepssfslagpwvdvaApgenlvs 209
+ + kV N+S + s + s lg +++ +e+dv+ ++a n+++ +k v +PA + V s+d +++p+++s +gp + +
MMSYN1_0133 375 NLDIKVWNLSLGSIR-EVSSNYISLLGSLLDQlQYENDVIFIVAGTNDNECKQKIVGSPADSINSIVVNSVDFKNKPANYSRKGPVLTYFNKPDISYY 471
567788888887654.44445567788888885666777766666666555566899*****99*********************9887765554443 PP
TIGR03921 210 ..lspggdglasavgespleGtSfAaplVsgvAaLvrskfpeltaaqvirrleaTarkpar...grddsvGaGvv 279
+++++ ++ ge ++GtSfAap + +a + k + + ++ + ++a k + ++ d +G+Gvv
MMSYN1_0133 472 ggVDNNKITVCGCYGEAKVQGTSFAAPWITRKVAYLIYK-MNYSKEEAKALIIDSAIKFDKqkdNNRDLIGYGVV 545
013333333444449*************99877654333.244555555555555544433223677899***99 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (757 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 237 (0.0528075); expected 89.8 (0.02)
Passed bias filter: 75 (0.0167112); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.22
# Mc/sec: 4941.29
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0133 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0137 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0137.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0137/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0137 [L=92]
Description: L31: ribosomal protein L31 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.3e-18 63.2 0.2 6e-18 62.7 0.2 1.2 1 TIGR00105 L31: ribosomal protein bL31
0.007 14.5 1.1 0.011 13.9 0.7 1.6 1 TIGR00686 phnA: putative alkylphosphonate utilization operon
Domain annotation for each model (and alignments):
>> TIGR00105 L31: ribosomal protein bL31
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 62.7 0.2 2.7e-21 6e-18 2 67 .. 3 69 .. 2 70 .. 0.86
Alignments for each domain:
== domain 1 score: 62.7 bits; conditional E-value: 2.7e-21
TIGR00105 2 KkdiHpdy.heikvkc.tcgnefetrStlgkdelaldicskcHPfytGkqkivdtgGrvekfkkkfga 67
K di p+y ++k+ c tc +e t +++e+++d+cs+cHPfytG q + +Grve+fk+kf++
MMSYN1_0137 3 KIDIQPKYfDQAKFICtTCASEWV-CGTSKSEEVRVDVCSNCHPFYTGAQTYTNVAGRVEQFKSKFAK 69
789****63789****66666665.5677777**********************************86 PP
>> TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.9 0.7 4.8e-06 0.011 6 39 .. 2 33 .. 1 51 [. 0.78
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 4.8e-06
TIGR00686 6 pkcnseytyedstqlicpecayewnenevaeedd 39
pk + + y d++++ic ca ew + +
MMSYN1_0137 2 PKIDIQPKYFDQAKFICTTCASEWVCGTSKS--E 33
78888889****************7655544..3 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (92 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 269 (0.0599376); expected 89.8 (0.02)
Passed bias filter: 83 (0.0184938); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 695.35
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0137 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0138 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0138.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0138/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0138 [L=632]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.02 12.4 0.5 0.066 10.7 0.3 2.0 1 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
Domain annotation for each model (and alignments):
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.7 0.3 1.5e-05 0.066 69 140 .. 452 523 .. 432 532 .. 0.87
Alignments for each domain:
== domain 1 score: 10.7 bits; conditional E-value: 1.5e-05
TIGR02982 69 lkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykpe 140
k++sekel q+ +i i q+h l++++ ++ ++ +l++++ ++++k + +e+l +++ l+++ +
MMSYN1_0138 452 TKHLSEKELLQLFETIKSIQQHHPLMTFIFLNDSINDVYDLNKSIYYTNNKLELKEMLAVDIFDSLLKKQDN 523
467899****************************************************87666665555554 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (632 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 615 (0.137032); expected 89.8 (0.02)
Passed bias filter: 90 (0.0200535); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.21
# Mc/sec: 4321.81
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0138 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0139 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0139.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0139/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0139 [L=316]
Description: DHHA1 domain protein 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (316 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 155 (0.0345365); expected 89.8 (0.02)
Passed bias filter: 88 (0.0196078); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 2388.37
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0139 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0140 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0140.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0140/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0140 [L=209]
Description: tdk 4=Probable Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (209 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 414 (0.092246); expected 89.8 (0.02)
Passed bias filter: 266 (0.0592692); expected 89.8 (0.02)
Passed Vit filter: 20 (0.00445633); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 1500.66
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0140 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0141 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0141.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0141/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0141 [L=364]
Description: prfA: peptide chain release factor 1 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.3e-155 513.5 16.7 7.5e-155 513.2 16.7 1.0 1 TIGR00019 prfA: peptide chain release factor 1
1.5e-87 291.9 12.9 1.8e-87 291.6 12.9 1.0 1 TIGR00020 prfB: peptide chain release factor 2
3.1e-31 106.4 0.6 5.7e-31 105.6 0.6 1.5 1 TIGR03072 release_prfH: putative peptide chain release facto
Domain annotation for each model (and alignments):
>> TIGR00019 prfA: peptide chain release factor 1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 513.2 16.7 5e-158 7.5e-155 4 358 .. 3 358 .. 1 361 [. 0.98
Alignments for each domain:
== domain 1 score: 513.2 bits; conditional E-value: 5e-158
TIGR00019 4 kslleklesleeryeeleelLsdpevisdqkklrklskeysqleeivkkyeeykklqedlkeakelleke.dkelrelakeeleelekkieeleeqlk 100
+ e le++++r ++ ++L+d ++ +d kk+++l+ke+s+lee+v+k+ eyk++ e++k+ak +le+e d+el elak el+e + k+e+l++ ++
MMSYN1_0141 3 AKTYEALETMQKRLLQILKDLEDENILKDIKKFTELNKEKSNLEEVVEKFVEYKQAVEHIKDAKVILENEkDQELIELAKIELDENNDKVEHLQQVIE 100
567789**************************************************************777*************************** PP
TIGR00019 101 vlLlPkDpndeknvileiragtGGdeaalfagdLfrmYsryaeskkWkveilsaseselgGykevileikGegvysklkfesGvhRvqRvPvtesqGR 198
+LlPkDpnd+knvi+eir+++GGdea +fagdL+rmY+ yae+++Wk++il+as++e gGy +v+++ikG++vysklkfesG+hRvqRvP+te++GR
MMSYN1_0141 101 EMLLPKDPNDDKNVIVEIRGAAGGDEANIFAGDLLRMYKLYAETQNWKINILEASVGEAGGYSQVVFMIKGDRVYSKLKFESGAHRVQRVPKTEAKGR 198
************************************************************************************************** PP
TIGR00019 199 vhtsaatvavlPeveevevkinpkdlridtyrssGaGGqhvnttdsavrithlPtgivvecqdersqlknkekalkvLraklleaeeekqqeeqakeR 296
++ts+atvavlPe+ eve++i +dlridtyr+sGaGGqhvnttdsavrithlPtgivv+ qd+rsq+ nk+ a+ +Lrak++eae ekqq++++++R
MMSYN1_0141 199 IQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAVRITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQAQADATR 296
************************************************************************************************** PP
TIGR00019 297 ksqvgsgdRseriRtYnfpqnRvtdhRinltlykLdevlegdldeliealiaeeqkekleel 358
k++vg+g Rse+iRtYn+pqnRvtdhR++ltl+kLd+v+eg++de i ali+eeq++k++e
MMSYN1_0141 297 KNAVGTGARSEKIRTYNYPQNRVTDHRVGLTLNKLDQVMEGNIDEFIIALINEEQRQKVAEQ 358
*********************************************************99864 PP
>> TIGR00020 prfB: peptide chain release factor 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 291.6 12.9 1.2e-90 1.8e-87 26 361 .. 9 347 .. 2 351 .. 0.94
Alignments for each domain:
== domain 1 score: 291.6 bits; conditional E-value: 1.2e-90
TIGR00020 26 leklkarleklekeledpnlWndqekaqkvikeksslkekldkleelkksledlsellelakeekdeellaeleeelkalekelkele..lktll..s 119
le++++rl ++ k+led+n+ +d +k +++keks+l+e+++k+ e k+ +e +++ ++++ekd+el+ ++ el++ + ++++l+ ++ +l +
MMSYN1_0141 9 LETMQKRLLQILKDLEDENILKDIKKFTELNKEKSNLEEVVEKFVEYKQAVEHIKDAKVILENEKDQELIELAKIELDENNDKVEHLQqvIEEMLlpK 106
68999*****************************************************************9999999999888876642244444358 PP
TIGR00020 120 geydaknalltiqaGaGGteaqdWasmLlrmylrwaerrgykveildlseaeeaGiksvtllikgeyayGyLksekGvhrLvrisPfdanarrhtsfa 217
+++d+kn +++i+ aGG ea +a Llrmy+ +ae +++k++il+ s +e +G v ++ikg+ y Lk e+G hr+ r+ +a++r +ts a
MMSYN1_0141 107 DPNDDKNVIVEIRGAAGGDEANIFAGDLLRMYKLYAETQNWKINILEASVGEAGGYSQVVFMIKGDRVYSKLKFESGAHRVQRVPKTEAKGRIQTSTA 204
99************************************************************************************************ PP
TIGR00020 218 svevlPevdddidieikeedvridvyrasGaGGqhvnktdsavrithiptgivvqcqnersqlknkekalkllkakLyelelekeeaekkaledekke 315
+v vlPe+ +++iei+++d+rid+yrasGaGGqhvn+tdsavrith+ptgivv++q+ rsq+ nk+ a+ +l+ak+ye e+ek++a+ +a++++ +
MMSYN1_0141 205 TVAVLPEM-SEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAVRITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQAQADATRKNAVG 301
********.889*******************************************************************************9998877 PP
TIGR00020 316 igW.GsqirsyvlhpyklvkdlrtevevgnveavldGdidefieayl 361
g ++ir+y + + ++v d+r ++ + + v++G+idefi a +
MMSYN1_0141 302 TGArSEKIRTYNYPQ-NRVTDHRVGLTLNKLDQVMEGNIDEFIIALI 347
7642679****9865.***************************8876 PP
>> TIGR03072 release_prfH: putative peptide chain release factor H
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 105.6 0.6 3.8e-34 5.7e-31 3 196 .. 116 313 .. 114 317 .. 0.79
Alignments for each domain:
== domain 1 score: 105.6 bits; conditional E-value: 3.8e-34
TIGR03072 3 LqlssaqGPaecclavakalerlkreaakrkvkvevlekeagekartlrsvlvsLeGeaaealaerweGtl..lwiaespyRkkhrRknWfvgverf. 97
+ + a G +e+ + l++ k a++++ k+++le +ge+ + + v+ ++G++ + + G++ + + + + + + + v+v
MMSYN1_0141 116 VEIRGAAGGDEANIFAGDLLRMYKLYAETQNWKINILEASVGEA-GGYSQVVFMIKGDRVYSKLKFESGAHrvQRVPKTEAKGRIQTSTATVAVLPEm 212
5678899***********************************97.5677788899**99877666666654114444444444444445555554334 PP
TIGR03072 98 .saeeeaeedeirfetlrasGpGGqhvnktesavRavhlasGisvkvqseRsqhankrLaklllavkLekleeeqaaalra.errsahhqieRGnpvk 193
+ e e++++++r++t rasG GGqhvn+t+savR++hl++Gi+v +q+ Rsqh+nk +a+++l k+ + e e+++a++ +r++a +R + ++
MMSYN1_0141 213 sEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAVRITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQAQADaTRKNAVGTGARSEKIR 310
46778999************************************************************999988887776515555555666777777 PP
TIGR03072 194 vfk 196
+++
MMSYN1_0141 311 TYN 313
666 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (364 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 514 (0.114528); expected 89.8 (0.02)
Passed bias filter: 95 (0.0211676); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 2376.00
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0141 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0142 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0142.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0142/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0142 [L=282]
Description: PrmC 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-70 235.9 0.1 1.4e-70 235.6 0.1 1.0 1 TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransfer
2.1e-61 205.5 4.2 2.5e-61 205.2 4.2 1.0 1 TIGR00536 hemK_fam: methyltransferase, HemK family
2e-38 130.3 3.7 4.2e-38 129.2 2.5 1.7 2 TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransf
1.7e-14 51.8 0.0 2e-14 51.6 0.0 1.1 1 TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) met
1.5e-09 35.8 1.0 1.5e-09 35.8 1.0 1.9 2 TIGR00537 hemK_rel_arch: putative methylase
8.1e-09 33.4 0.1 1.5e-08 32.5 0.1 1.5 1 TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltran
1.3e-05 22.6 0.1 3.6e-05 21.1 0.1 1.7 2 TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesi
8.2e-05 20.8 0.2 0.00018 19.8 0.2 1.5 1 TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarb
0.00017 18.6 0.0 0.00025 18.1 0.0 1.2 1 TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransfe
0.00043 17.7 2.3 0.00059 17.3 2.3 1.3 1 TIGR00308 TRM1: N2,N2-dimethylguanosine tRNA methyltransfera
0.00064 17.4 0.2 0.0015 16.2 0.2 1.6 1 TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltran
0.0008 16.9 3.1 0.0008 16.9 3.1 1.9 2 TIGR00406 prmA: ribosomal protein L11 methyltransferase
0.0013 16.6 0.1 0.0025 15.6 0.1 1.5 1 TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransfe
0.0092 13.5 0.3 0.019 12.5 0.3 1.5 1 TIGR02752 MenG_heptapren: demethylmenaquinone methyltransfer
------ inclusion threshold ------
0.062 10.6 3.5 0.24 8.6 0.1 2.1 2 TIGR00755 ksgA: ribosomal RNA small subunit methyltransferas
Domain annotation for each model (and alignments):
>> TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 235.6 0.1 4.5e-73 1.4e-70 2 250 .. 24 275 .. 23 278 .. 0.96
Alignments for each domain:
== domain 1 score: 235.6 bits; conditional E-value: 4.5e-73
TIGR03534 2 aelllahvlkleraelllkkeeelseeelekfeelverrakgePvayilgekefyglklkvseavLiPRpdTElLveaaleelkkkeklkvlDlgtGs 99
+ +l+h+++++ ++++++ + +l+++++ k++++++ ++++P+ayil++k fy+ ++ ++++vLiPR ++El++++a e++k+++ l ++Dl+tGs
MMSYN1_0142 24 VYHILEHIINKDYQWIISNLDYKLTKKQIYKIDQILDLLKQNYPLAYILKSKYFYSNNFFINKDVLIPRNESELIIDHASEFVKNNNDLLIVDLCTGS 121
56799********************************************************************************************* PP
TIGR03534 100 GaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdlleal.eekgkfdlivsNPPYipeaekeeleeevrkfEPklALvggedGld 196
G+++++ a ++ kvi++Dis +Alkva+kN+k+ +l+++++l++++++ l +++ k +li++NPPYi+ ++++++++v +fEP+ AL++ ++Gl+
MMSYN1_0142 122 GCLGISCALLNDQNKVILTDISYKALKVANKNIKKFNLTNTSCLNGNFIDVLiKNNLKANLIICNPPYID-INDQNIDKNVIDFEPSIALFAPNKGLY 218
***************************************************99*****************.777999********************* PP
TIGR03534 197 lyrriaeeaakll..keggllllEigekqaeavaelleaagfk.eveilkDlagkdR 250
+y+ ++++++k+l +++ l++lE+g+ q++++++ll ++ +k ++e++kD+++ R
MMSYN1_0142 219 FYEILIKNIDKILdtNKNFLIVLEFGWLQKDSIEQLLINNCLKyKWEFKKDYNDYWR 275
*************66677899******************99776*********9877 PP
>> TIGR00536 hemK_fam: methyltransferase, HemK family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 205.2 4.2 8.3e-64 2.5e-61 2 278 .. 4 277 .. 3 281 .. 0.94
Alignments for each domain:
== domain 1 score: 205.2 bits; conditional E-value: 8.3e-64
TIGR00536 2 tieevlrwaksalseaaakenpkleallllelslkkerklllaflkeelteeekerlkelverrlegvPvaYllgkkeFlglelvvnedvLIPRpete 99
ti++vl+++k++++ +++ + +le+ ++k + ++ +l+ +lt+++ +++++ ++ ++++P+aY+l++k F++ ++++n+dvLIPR e e
MMSYN1_0142 4 TIFNVLNKIKNTNISLNKA-----DVYHILEHIINKDYQWIISNLDYKLTKKQIYKIDQILDLLKQNYPLAYILKSKYFYSNNFFINKDVLIPRNESE 96
7888999999988888855.....78999********************************************************************* PP
TIGR00536 100 elvekaleslisqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnlleslakq..kidlivsNPPYidk 195
+++++a e + +++ + i+Dl+tGsGc ++++Al + + +vi Dis +al+va++N++k++l + + +n+ + l k+ k++li+ NPPYid
MMSYN1_0142 97 LIIDHASEFVKNNND-LLIVDLCTGSGCLGISCALLNDQNKVILTDISYKALKVANKNIKKFNLTN-TSCLNGNFIDVLIKNnlKANLIICNPPYIDI 192
******988888885.99***********************************************6.************99999************** PP
TIGR00536 196 edladkeeevkfEPllALvggkdGlkilkkiieqakeylksng..vlllEignsqqkelkellrkkfkiadvelkkdlsgkeRvv 278
+d + +++++ fEP AL++ ++Gl +++ +i+++ ++l n +++lE g+ q ++++ll+ + ++ e+kkd+++ R+
MMSYN1_0142 193 NDQNIDKNVIDFEPSIALFAPNKGLYFYEILIKNIDKILDTNKnfLIVLEFGWLQKDSIEQLLINNCLKYKWEFKKDYNDYWRNL 277
**************************************97554226789************99999999**********998875 PP
>> TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.8 0.2 0.047 14 170 199 .. 13 45 .. 4 57 .. 0.74
2 ! 129.2 2.5 1.4e-40 4.2e-38 40 256 .. 31 248 .. 21 269 .. 0.84
Alignments for each domain:
== domain 1 score: 2.8 bits; conditional E-value: 0.047
TIGR03533 170 ledrveliqsdlfeale...gkkydlivsnPPY 199
+ +++l ++d+++ le +k y++i+sn Y
MMSYN1_0142 13 KNTNISLNKADVYHILEhiiNKDYQWIISNLDY 45
4567999999999876544489********888 PP
== domain 2 score: 129.2 bits; conditional E-value: 1.4e-40
TIGR03533 40 alklpldlleelldarltkeekeellelierRveeriPvaYltneawfaglefyvdervlvPRspiaelieeefapllekeevkrvldlctGsGClai 137
++ +++ + ld +ltk++ ++ +++ ++++ P+aY++++ +f + +f ++++vl+PR +eli ++ ++++++++ ++dlctGsGCl+i
MMSYN1_0142 31 IINKDYQWIISNLDYKLTKKQIYKIDQIL-DLLKQNYPLAYILKSKYFYSNNFFINKDVLIPRNE-SELIIDHASEFVKNNNDLLIVDLCTGSGCLGI 126
45555555556677888888888876655.56899****************************87.899999******999999************** PP
TIGR03533 138 aaaeafpeaevdavDisedaLevaeenieeyeledrveliqsdlfeale..gkkydlivsnPPYvdaeelaelpeEyrhEPelalaagedGldlvrri 233
+a ++ +v ++Dis +aL+va++ni++++l+++ + ++++ + l + k +li++nPPY+d ++ + + EP++al a + Gl + + +
MMSYN1_0142 127 SCALLNDQNKVILTDISYKALKVANKNIKKFNLTNT-SCLNGNFIDVLIknNLKANLIICNPPYIDINDQNIDKNVIDFEPSIALFAPNKGLYFYEIL 223
*********************************986.6778888888851255789***********998888888999******************* PP
TIGR03533 234 laeaaeyLeee..GvLvvEvGnske 256
+++ ++ L+++ ++v+E G ++
MMSYN1_0142 224 IKNIDKILDTNknFLIVLEFGWLQK 248
********76511566779987443 PP
>> TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.6 0.0 6.8e-17 2e-14 31 194 .. 56 219 .. 45 269 .. 0.86
Alignments for each domain:
== domain 1 score: 51.6 bits; conditional E-value: 6.8e-17
TIGR03704 31 aalverrvaGlplehvlGwaefrGlriavdpgvfvprrrteflvdeavalakersarlvvvdlccGsGavgaalaaaldavelhaadidpaavrcarr 128
++++ pl ++l f ++ v++pr +e+++d+a + +k+++ l +vdlc GsG +g++ a d+ ++ +di a++ a +
MMSYN1_0142 56 DQILDLLKQNYPLAYILKSKYFYSNNFFINKDVLIPRNESELIIDHASEFVKNNN-DLLIVDLCTGSGCLGISCALLNDQNKVILTDISYKALKVANK 152
55555566678*****************************************999.899*************************************** PP
TIGR03704 129 nlad...aGgrvyeGdlyealptelrGrvdillanvpyvptdeiallppeardheprvaldGGadGldv 194
n+++ + + +G++ + l ++ + ++++ n py+ ++ + + + d ep +al Gl
MMSYN1_0142 153 NIKKfnlTNTSCLNGNFIDVLIKN-NLKANLIICNPPYIDIND-QNIDKNVIDFEPSIALFAPNKGLYF 219
*987333467899******99765.34678999******9988.5578899999**9999888888865 PP
>> TIGR00537 hemK_rel_arch: putative methylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.0 0.3 0.49 1.5e+02 62 107 .. 11 61 .. 5 79 .. 0.72
2 ! 35.8 1.0 5e-12 1.5e-09 7 133 .. 94 234 .. 88 266 .. 0.76
Alignments for each domain:
== domain 1 score: -0.0 bits; conditional E-value: 0.49
TIGR00537 62 klnnveldvlesdlfe....nvegkfdvilfnpPyleleed.ekrgdyldl 107
k++n ++++ ++d+++ +++ ++ i+ n y ++++ k++++ldl
MMSYN1_0142 11 KIKNTNISLNKADVYHilehIINKDYQWIISNLDYKLTKKQiYKIDQILDL 61
678888888888876411113566899999999985554442678888886 PP
== domain 2 score: 35.8 bits; conditional E-value: 5e-12
TIGR00537 7 ds.llleknlrelkndd...vleiGaGtGlvairlkekgk..kivatdinPfavkllkena.klnnveldvlesdlfenveg...kfdvilfnpPyle 94
+s l++ ++ + +kn++ ++++ +G+G + i ++ + k++ tdi+ a k++++n k+n + + l++++++ + + k ++i+ npPy++
MMSYN1_0142 94 ESeLIIDHASEFVKNNNdllIVDLCTGSGCLGISCALLNDqnKVILTDISYKALKVANKNIkKFNLTNTSCLNGNFIDVLIKnnlKANLIICNPPYID 191
443555555555554433578899******9998875544449**************9997258999********999876557899*********** PP
TIGR00537 95 leedekrgdyldl....aidGGkdGrkvidrfldelpeilkeg 133
+++++ +++d+ a+ ++G + +++++++il +
MMSYN1_0142 192 INDQNIDKNVIDFepsiALFAPNKGLYFYEILIKNIDKILDTN 234
***9999999996333366777777777777777777777655 PP
>> TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.5 0.1 4.8e-11 1.5e-08 53 138 .. 111 193 .. 104 234 .. 0.89
Alignments for each domain:
== domain 1 score: 32.5 bits; conditional E-value: 4.8e-11
TIGR00095 53 gakvLdlfaGsgalglE.ALsRgakkvvfveqdkkvaktlkeNlstlklskeqatvlndaeralavlakketvfdiiylDPPfevkl 138
++ ++dl+ Gsg lg+ AL + +kv++ + + k+ k+ +N+++++l++ + ln++ ++vl k++ ++i PP+ +
MMSYN1_0142 111 DLLIVDLCTGSGCLGIScALLNDQNKVILTDISYKALKVANKNIKKFNLTN--TSCLNGN--FIDVLIKNNLKANLIICNPPYIDIN 193
56689**********9669*******************************9..999***9..899******************6555 PP
>> TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.1 0.1 1.2e-07 3.6e-05 34 95 .. 105 167 .. 98 179 .. 0.81
2 ? -2.9 0.0 2.6 7.7e+02 178 204 .. 220 246 .. 206 259 .. 0.63
Alignments for each domain:
== domain 1 score: 21.1 bits; conditional E-value: 1.2e-07
TIGR01934 34 kieeekeekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkkakekeeanvefiea 95
++++++ ++D++tG+G l i++a kv+++D+s + L+va+k +k+ + +n + +++
MMSYN1_0142 105 FVKNNNDLLIVDLCTGSGCLGISCALLNDqNKVILTDISYKALKVANKNIKKFNLTNTSCLNG 167
4566677889*************99988889*****************998766556655555 PP
== domain 2 score: -2.9 bits; conditional E-value: 2.6
TIGR01934 178 YeYLaeSiekfpskeelaallkeagfe 204
Ye L + i+k +++++ ++ e g+
MMSYN1_0142 220 YEILIKNIDKILDTNKNFLIVLEFGWL 246
455666666666666666666655554 PP
>> TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.8 0.2 6e-07 0.00018 21 85 .. 111 176 .. 103 186 .. 0.86
Alignments for each domain:
== domain 1 score: 19.8 bits; conditional E-value: 6e-07
TIGR02469 21 d.vllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdapkaeeds 85
d ++D G+G ++i+ a l + +v+ + + +al++ ++N+++f++ n ++g++ ++ +++
MMSYN1_0142 111 DlLIVDLCTGSGCLGISCALLNDQNKVILTDISYKALKVANKNIKKFNLTNTSCLNGNFIDVLIKN 176
44799***************************************************9988665554 PP
>> TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.1 0.0 8.3e-07 0.00025 224 315 .. 101 194 .. 75 215 .. 0.86
Alignments for each domain:
== domain 1 score: 18.1 bits; conditional E-value: 8.3e-07
TIGR02085 224 tarqwvrelevkelwdlfcGvGGfglhca..apdikltGieieseaiaaakrsakelGlenlsfaaldsakfaeakadvpelvlvnpprrGiGk 315
a ++v++ + + dl G G +g+ ca ++ k+ +i+ +a+ a++ k++ l+n s + + +++ + +l++ npp i
MMSYN1_0142 101 HASEFVKNNNDLLIVDLCTGSGCLGISCAllNDQNKVILTDISYKALKVANKNIKKFNLTNTSCLNGNFIDVLIKNNLKANLIICNPPYIDIND 194
6889999999999****************8767788888899*********************999999999999999**********877754 PP
>> TIGR00308 TRM1: N2,N2-dimethylguanosine tRNA methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.3 2.3 2e-06 0.00059 18 122 .. 84 187 .. 50 202 .. 0.83
Alignments for each domain:
== domain 1 score: 17.3 bits; conditional E-value: 2e-06
TIGR00308 18 YnPrmkfnRDlsvvvikafdnlygkeckieildalsasGiRaiRyakeiegvkevianDinPkavesiknnvklnsvenievineDaaavlrkrnrkf 115
n + R+ s ++i +++ ++++++ i+d ++sG +i a +++ ++vi+ Di+ ka+++ ++n+k ++ n+ n++ vl k+n k
MMSYN1_0142 84 INKDVLIPRNESELIIDHASEFVKNNNDLLIVDLCTGSGCLGISCAL-LNDQNKVILTDISYKALKVANKNIKKFNLTNTSCLNGNFIDVLIKNNLKA 180
3444444444455677777888888899***************9998.56699****************************************99888 PP
TIGR00308 116 eviDiDP 122
+ i +P
MMSYN1_0142 181 NLIICNP 187
8876655 PP
>> TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.2 0.2 5e-06 0.0015 41 106 .. 106 174 .. 93 194 .. 0.81
Alignments for each domain:
== domain 1 score: 16.2 bits; conditional E-value: 5e-06
TIGR00138 41 lkesk.kkviDiGsGaGfPGiplallrpelkltLlesnkKkvaFLkevkkeLglenveilkarvek..k 106
+k+++ ++D+ +G+G+ Gi all+++ k+ L + + K + ++ +k+++l+n++ l++ +
MMSYN1_0142 106 VKNNNdLLIVDLCTGSGCLGISCALLNDQNKVILTDISYKALKVANKNIKKFNLTNTSCLNGNFIDvlI 174
3333356799************************************************99987666554 PP
>> TIGR00406 prmA: ribosomal protein L11 methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.1 0.1 1.7 5e+02 244 269 .. 15 40 .. 2 74 .. 0.50
2 ! 16.9 3.1 2.7e-06 0.0008 148 232 .. 97 186 .. 93 187 .. 0.78
Alignments for each domain:
== domain 1 score: -2.1 bits; conditional E-value: 1.7
TIGR00406 244 qivrLvkegGllilSGileeqaqsvl 269
+ + L k + + il i+++ q ++
MMSYN1_0142 15 TNISLNKADVYHILEHIINKDYQWII 40
33333333333333333333333322 PP
== domain 2 score: 16.9 bits; conditional E-value: 2.7e-06
TIGR00406 148 lClellesldlkd..kkviDvGcGSGiLsiaalkl.gaakvvavDiDplavesarkNlelNqvsdllqvklen..leqkiegkaDvivaN 232
l ++ +++++++ ++D+ +GSG L+i+ ++l + +kv+ Di a++ a kN+++ +++++ + + k + ka+ i++N
MMSYN1_0142 97 LIIDHASEFVKNNndLLIVDLCTGSGCLGISCALLnDQNKVILTDISYKALKVANKNIKKFNLTNTSCLNGNFidVLIKNNLKANLIICN 186
5667777777766224578***********9776626789*******************9999888777666544556677788888888 PP
>> TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.6 0.1 8.5e-06 0.0025 35 104 .. 111 186 .. 98 187 .. 0.82
Alignments for each domain:
== domain 1 score: 15.6 bits; conditional E-value: 8.5e-06
TIGR02072 35 pakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.....nvqficgdieklplekks.fDlivSn 104
+ + d+ G+G l ++ ++q+++i++Dis++ l++a+k+++ n +++ g++ + + ++ li++n
MMSYN1_0142 111 DLLIVDLCTGSGCLGISCALLNDQNKVILTDISYKALKVANKNIKkfnltNTSCLNGNFIDVLIKNNLkANLIICN 186
45799***************************************98988888888888877765555346777766 PP
>> TIGR02752 MenG_heptapren: demethylmenaquinone methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.5 0.3 6.3e-05 0.019 49 113 .. 114 177 .. 100 185 .. 0.86
Alignments for each domain:
== domain 1 score: 12.5 bits; conditional E-value: 6.3e-05
TIGR02752 49 aldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhgnamelpyedn 113
++d+c g++ i+ a + ++ +v+ d+s + l+v+++ +k+ +l+n + + gn +++ ++n
MMSYN1_0142 114 IVDLCTGSGCLGISCA-LLNDQNKVILTDISYKALKVANKNIKKFNLTNTSCLNGNFIDVLIKNN 177
6799999999999876.5788999********************************998876665 PP
>> TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.7 0.6 0.051 15 65 113 .. 7 54 .. 1 65 [. 0.77
2 ? 8.6 0.1 0.00081 0.24 16 104 .. 97 189 .. 93 197 .. 0.86
Alignments for each domain:
== domain 1 score: 2.7 bits; conditional E-value: 0.051
TIGR00755 65 eelrkkleeekkleiiegDalkldleelakdk.kvvsNlPYnissplvlk 113
+ l+k ++ ++ + + D+ ++ + ++kd ++sNl Y+++ + + k
MMSYN1_0142 7 NVLNKIKNT--NISLNKADVYHILEHIINKDYqWIISNLDYKLTKKQIYK 54
556666655..99999****99966666665589********99887665 PP
== domain 2 score: 8.6 bits; conditional E-value: 0.00081
TIGR00755 16 svlqkivealeiqesdrvlEiGpGlGaL..TeellkkakkvvavEiDkrlaeelrkklee..ekkleiiegDalkldleelakdkkvvsNlPY 104
++++ e+++ +++ ++ G G L + +ll+ ++kv++ i + + +k+ ++ ++ ++g+++++ +++ k ++++ N PY
MMSYN1_0142 97 LIIDHASEFVKNNNDLLIVDLCTGSGCLgiSCALLNDQNKVILTDISYKALKVANKNIKKfnLTNTSCLNGNFIDVLIKNNLKANLIICNPPY 189
567777788888888889888777776533789*****************9999999999777888899******9999999999*******9 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (282 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 224 (0.0499109); expected 89.8 (0.02)
Passed bias filter: 92 (0.0204991); expected 89.8 (0.02)
Passed Vit filter: 24 (0.00534759); expected 4.5 (0.001)
Passed Fwd filter: 15 (0.00334225); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 15 [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 1760.71
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0142 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0143 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0143.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0143/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0143 [L=490]
Description: membrane protein, putative 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (490 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 436 (0.097148); expected 89.8 (0.02)
Passed bias filter: 78 (0.0173797); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 3518.31
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0143 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0144 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0144.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0144/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0144 [L=166]
Description: tsaC 4=Probable tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-19 66.1 2.7 6.5e-18 62.6 2.7 1.9 1 TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modifi
Domain annotation for each model (and alignments):
>> TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 62.6 2.7 1.4e-21 6.5e-18 10 176 .. 6 155 .. 2 163 .. 0.83
Alignments for each domain:
== domain 1 score: 62.6 bits; conditional E-value: 1.4e-21
TIGR00057 10 viekavkllkkgeivvyPTdtvYglgadaldeeAvkrlleikkrpsnkplivlvsdlseieklaevkekakkLikkflpGpltlvlkkkkeiprlvsk 107
+i+ka++llk+++i+++PTdt+Ygl+a e+ + r+ ++k+ + kplivl+s+l+++++l + + k + + p t+++k+k
MMSYN1_0144 6 KINKAIELLKNNQIIILPTDTIYGLSAIYSLENQI-RVNQVKNADITKPLIVLISNLDQLNDLEITDLTDKDYLLND--EPTTVIFKTKS-------- 92
79*************************88888776.79*************************99776666655544..45588888764........ PP
TIGR00057 108 krktvaiRvPdeeialelleelgkPivatSanlsgkesateveeivkeldkkvdliidagevkkgeest 176
+aiR+ ++e +++++++ g Pi++tS+nl + ++ + + + +++k+++l d + +++++s
MMSYN1_0144 93 --SSIAIRLVKREDIKQIINKTG-PIISTSVNLHNFKPLIKENDLI-NFNKNIELFFDTQ--LNNKPSK 155
..469*****************8.***********99888766655.6999999999987..4455554 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (166 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 261 (0.0581551); expected 89.8 (0.02)
Passed bias filter: 119 (0.0265152); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1191.92
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0144 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0145 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0145.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0145/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0145 [L=304]
Description: Acetyltransferase, GNAT family 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (304 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 182 (0.0405526); expected 89.8 (0.02)
Passed bias filter: 85 (0.0189394); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 2182.79
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0145 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0146 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0146.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0146/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0146 [L=235]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.011 13.4 0.3 0.011 13.4 0.3 1.7 2 TIGR00017 cmk: cytidylate kinase
0.022 13.0 1.0 0.073 11.3 0.4 2.1 2 TIGR03422 mito_frataxin: frataxin
Domain annotation for each model (and alignments):
>> TIGR00017 cmk: cytidylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.4 0.1 0.34 7.7e+02 67 86 .. 21 40 .. 8 59 .. 0.66
2 ? 13.4 0.3 4.8e-06 0.011 45 90 .. 105 148 .. 83 151 .. 0.89
Alignments for each domain:
== domain 1 score: -2.4 bits; conditional E-value: 0.34
TIGR00017 67 efikekgevevllngedvse 86
+f k+++ +++l+++d ++
MMSYN1_0146 21 DFLKNNQLEDIYLKNTDFNK 40
55666666666666666543 PP
== domain 2 score: 13.4 bits; conditional E-value: 4.8e-06
TIGR00017 45 lqnkvdlededallelikeldiefikekgevevllngedvseairt 90
n++d++ e++l+e++k+ di+f ++ ++ ++n++++ + i +
MMSYN1_0146 105 KYNSLDINYEKQLIEIAKQYDIKFSTDF--INTYFNNHQIYHYISN 148
6799********************9998..9999****99999876 PP
>> TIGR03422 mito_frataxin: frataxin
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.4 3.3e-05 0.073 2 60 .. 82 143 .. 81 159 .. 0.87
2 ? -1.6 0.0 0.34 7.6e+02 69 86 .. 212 229 .. 208 233 .. 0.79
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 3.3e-05
TIGR03422 2 yekvadetlekllekleeleeeaeeleldveysagvltlel...kevGtyvinkqpPnkqiW 60
y++++++ l++++ ++ +++ +++ +ld++y +++++++ + t in n+qi+
MMSYN1_0146 82 YKSLSEQKLNQINLTIKKIATNRKYNSLDINYEKQLIEIAKqydIKFSTDFINTYFNNHQIY 143
899********************9999***********987333467888899999999986 PP
== domain 2 score: -1.6 bits; conditional E-value: 0.34
TIGR03422 69 krydlvveaegeWvylrd 86
++l + +++W+++ d
MMSYN1_0146 212 IFFNLLIMKNNKWISKLD 229
56888888999**99876 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (235 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 300 (0.0668449); expected 89.8 (0.02)
Passed bias filter: 66 (0.0147059); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1776.16
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0146 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0147 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0147.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0147/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0147 [L=509]
Description: bac_cardiolipin: cardiolipin synthase 5=Equivalog Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-101 337.7 11.3 3.7e-101 337.4 11.3 1.0 1 TIGR04265 bac_cardiolipin: cardiolipin synthase
Domain annotation for each model (and alignments):
>> TIGR04265 bac_cardiolipin: cardiolipin synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 337.4 11.3 8.2e-105 3.7e-101 9 483 .] 39 509 .] 30 509 .] 0.92
Alignments for each domain:
== domain 1 score: 337.4 bits; conditional E-value: 8.2e-105
TIGR04265 9 vgfilnlvlvfiiiflerraasstlaWLlvlvvlPlvGfilyLllGrlhlkkrrlekkdkedkralekivkkqledlkeekykkaeeqvqklaelvkl 106
+ ++l ++ +fi++ ++r + + W+ +v +P++G++ yL++Gr k +++k+ + le k+ ++l++ + + ++ q+ ++++ +k
MMSYN1_0147 39 IFHLLAIIWAFIVLADKKRRFETRIRWFCFIVCIPIIGVLSYLFFGR--SYKYKITKN----YKFLEIQNKHSENELEQIDQILTN-QIPQFKRAFKT 129
456788999999999999*****************************..667788883....333444444444556655555544.56667777777 PP
TIGR04265 107 llknqaafltednklklltdgddvydallkdiklakeyihleyyivqkdelgkqilesLeekakqGvevkllyDdvGskklkksyleelrnaGvevva 204
q+ + k++ l +g++++ +l kdik+ak+yi l++yi++ ++l +++++ L++k+k+ v+v ++yD +Gs +l+++ +l + G ++v
MMSYN1_0147 130 ASISQTNNIFLNTKVEFLENGNQLFLNLFKDIKNAKHYILLNFYIFKDGKLLDELTNLLIKKLKENVKVYIIYDFAGSYTLFEEAKIKLLEYGCQIVC 227
666666655566679*********************************************************************999999******** PP
TIGR04265 205 flkvkLpllnlrmnlrnhrkiiviDgqigyvGglnigDeylgkdaklGyWrDthlrieGdavealqlifilDWes...qagretleydtklfpkknes 299
+ ++++p+++++ n+r+hrk i+iD++igy+Gg+nigDey++ d+k+GyW D l+i+G+av+ +q ifi D++ +++ +++d +l + +
MMSYN1_0147 228 YAPIRFPFIKWTANYRDHRKDIIIDNKIGYIGGINIGDEYINLDNKFGYWNDCSLKITGNAVSEIQRIFISDYDFykpSFKKNSIKQDLDLDNVYSVK 325
************************************************************************986222458999************** PP
TIGR04265 300 agdsgvqiiasGPdeewelikkaylkmitsakksiylqsPyfiPdddlldaikiaaksGvDvsiliPnkpDkrlvfwasrsfaaeLLeaGvkvyeyen 397
d+ vqi++sGP++e+ l ++++i sa+k i++++PyfiP +++ a+ aa+s +Dv+iliP Dk + ++++ eL +aGvk+y+ +n
MMSYN1_0147 326 CKDQLVQIVSSGPNHEEPLHLSIFINLINSAQKRIWISTPYFIPPQEIRTALINAANSKLDVRILIPGLTDKAFLLDQTKQWTRELYKAGVKIYSINN 423
************************************************************************************************** PP
TIGR04265 398 GflhskivlvDdeiasvGtanlDmrsfeLnfevnafiydkslakdLkaayeddlekskqldkelyakrplfvklkeslskllsPlL 483
f h k+ l Ddei+ +G +nlD+r++ + + iy ksl k + +++e+d ++s d+ ++ f k+ ++ +++ PlL
MMSYN1_0147 424 VFNHNKTYLFDDEITFIGSTNLDFRALFADQQTMGLIYSKSLNKTISNKFEQDFKNSYLYDHLPNKNINWFRKIVIKIYNIIQPLL 509
************************************************************************************98 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (509 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 286 (0.0637255); expected 89.8 (0.02)
Passed bias filter: 122 (0.0271836); expected 89.8 (0.02)
Passed Vit filter: 17 (0.00378788); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.21
# Mc/sec: 3480.69
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0147 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0148 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0148.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0148/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0148 [L=139]
Description: rpsL_bact: ribosomal protein S12 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-65 215.6 4.7 3.5e-65 215.5 4.7 1.0 1 TIGR00981 rpsL_bact: ribosomal protein uS12
1.6e-12 45.3 0.4 2.1e-12 44.9 0.4 1.1 1 TIGR00982 uS12_E_A: ribosomal protein uS12
0.0063 14.5 0.0 0.0094 13.9 0.0 1.3 1 TIGR00008 infA: translation initiation factor IF-1
------ inclusion threshold ------
0.017 13.0 0.0 0.043 11.8 0.0 1.7 1 TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA
Domain annotation for each model (and alignments):
>> TIGR00981 rpsL_bact: ribosomal protein uS12
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 215.5 4.7 3.1e-68 3.5e-65 1 123 [. 1 136 [. 1 137 [. 0.99
Alignments for each domain:
== domain 1 score: 215.5 bits; conditional E-value: 3.1e-68
TIGR00981 1 matinqlvrkgrkkkkkkskspalek.............sPqkrGvctrvktvtPkkPnsalrkvarvrltngvevtayipGeghnlqehsvvlvrGG 85
m+tinqlv+ +rk k+ k+k+pal++ sPqkrGvctrv t+tPkkPnsalrk+arvrltng+ev+ayipGeghnlqehsvvl+rGG
MMSYN1_0148 1 MPTINQLVKVNRKAKTWKTKAPALNRgintlikkvtkiaSPQKRGVCTRVATMTPKKPNSALRKYARVRLTNGMEVNAYIPGEGHNLQEHSVVLIRGG 98
9************************************************************************************************* PP
TIGR00981 86 rvkdlPgvryhivrGaldtagvknrkqsrskyGakkpk 123
rvkdlPgvryh++rG+ldt+gv +r q+rs yG+k+pk
MMSYN1_0148 99 RVKDLPGVRYHVIRGTLDTQGVAKRSQGRSLYGVKRPK 136
************************************98 PP
>> TIGR00982 uS12_E_A: ribosomal protein uS12
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.9 0.4 1.9e-15 2.1e-12 9 120 .. 9 112 .. 4 128 .. 0.79
Alignments for each domain:
== domain 1 score: 44.9 bits; conditional E-value: 1.9e-15
TIGR00982 9 kekrkkfrwsdr..rykrrvlrlkekadplegapqargivlekvgveakqpnsalrkavrvqlikngkvvtafvpgdgainfidehdevivegiggpk 104
k +rk w+ + +r + +l +k +pq rg+ ++ k+pnsalrk rv+l ng v a++pg+g ++eh v++
MMSYN1_0148 9 KVNRKAKTWKTKapALNRGINTLIKKVTK-IASPQKRGVCTRVATMTPKKPNSALRKYARVRL-TNGMEVNAYIPGEGH--NLQEHSVVLIR------ 96
44555555555411455555566666555.579*******99999****************98.69************6..689**999985...... PP
TIGR00982 105 grsmgdipgvrykvvk 120
g+ + d+pgvry+v++
MMSYN1_0148 97 GGRVKDLPGVRYHVIR 112
56689*********86 PP
>> TIGR00008 infA: translation initiation factor IF-1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.9 0.0 8.3e-06 0.0094 21 52 .. 67 101 .. 53 115 .. 0.84
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 8.3e-06
TIGR00008 21 rveleNgvevlahisG...kirknyiriLpgDkVk 52
rv+l Ng ev+a+i G +++++++ ++ g +Vk
MMSYN1_0148 67 RVRLTNGMEVNAYIPGeghNLQEHSVVLIRGGRVK 101
8**************95556999*****9999997 PP
>> TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.8 0.0 3.8e-05 0.043 12 20 .. 73 81 .. 68 82 .. 0.92
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 3.8e-05
TIGR02107 12 GmEVTmYvs 20
GmEV++Y++
MMSYN1_0148 73 GMEVNAYIP 81
9******96 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (139 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 88 (0.0196078); expected 89.8 (0.02)
Passed bias filter: 73 (0.0162656); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1050.58
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0148 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0149 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0149.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0149/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0149 [L=155]
Description: rpsG_bact: ribosomal protein S7 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-67 224.0 3.5 2.1e-67 223.9 3.5 1.0 1 TIGR01029 rpsG_bact: ribosomal protein uS7
3.4e-20 70.5 2.8 4.2e-20 70.2 2.8 1.1 1 TIGR01028 uS7_euk_arch: ribosomal protein uS7
Domain annotation for each model (and alignments):
>> TIGR01029 rpsG_bact: ribosomal protein uS7
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 223.9 3.5 9.3e-71 2.1e-67 1 154 [] 2 155 .] 2 155 .] 1.00
Alignments for each domain:
== domain 1 score: 223.9 bits; conditional E-value: 9.3e-71
TIGR01029 1 rkkkaekrkvskdpvyksklvkklinkvmldGKKslaekivykaleklkkktkkdplevfekalenvkPllevksrrvgGatyqvPvevreerreala 98
rk++aekr+v+ dp+y+sklv++ ink+mldGK+ +a++i+y+a++ +k+kt+k+p+evf+ka+en+kP+le+k+rr+gGa+yqvPvev++er+ +la
MMSYN1_0149 2 RKNRAEKRDVLADPIYNSKLVTRAINKIMLDGKRGIAQSIIYDAFNIIKEKTNKEPIEVFNKAIENIKPHLELKVRRIGGANYQVPVEVSAERQITLA 99
89************************************************************************************************ PP
TIGR01029 99 irWlveaarkrkeksmaekLanelldalnneGaaikkredtHkmaeaNkafahyrw 154
+rWl+++ar r+ek m+ kLane++da+nn G ++kkredtHkmae Nkafahyrw
MMSYN1_0149 100 LRWLINYARLRNEKVMTIKLANEIIDASNNIGGSVKKREDTHKMAEPNKAFAHYRW 155
*******************************************************9 PP
>> TIGR01028 uS7_euk_arch: ribosomal protein uS7
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 70.2 2.8 1.9e-23 4.2e-20 48 185 .. 19 147 .. 14 148 .. 0.92
Alignments for each domain:
== domain 1 score: 70.2 bits; conditional E-value: 1.9e-23
TIGR01028 48 vsiverlinkvmrkernngkklkavkivkeafeiiekrtkknPiqvlvdaienagPredttrvkygGiayrqavdvsplrrvdvalrlialGareaaf 145
++v r ink+m + gk+ a i+ +af+ii+++t+k+Pi v+ +aien P + + gG++y++ v+vs+ r++ +alr + + ar
MMSYN1_0149 19 SKLVTRAINKIMLD----GKRGIAQSIIYDAFNIIKEKTNKEPIEVFNKAIENIKPHLELKVRRIGGANYQVPVEVSAERQITLALRWLINYAR---L 109
57899*******96....678899**********************************999999*************************98776...6 PP
TIGR01028 146 knkksiaealaeeiiaaakkdsksyaikkkeelervaksa 185
+n k + la+eii a+++ s +kk+e++ ++a+ +
MMSYN1_0149 110 RNEKVMTIKLANEIIDASNNIGGS--VKKREDTHKMAEPN 147
999999999********9988776..89999999999866 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (155 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 201 (0.0447861); expected 89.8 (0.02)
Passed bias filter: 115 (0.0256239); expected 89.8 (0.02)
Passed Vit filter: 13 (0.00289661); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1112.93
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0149 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0150 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0150.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0150/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0150 [L=689]
Description: EF-G: translation elongation factor G 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0 1194.1 7.4 0 1193.9 7.4 1.0 1 TIGR00484 EF-G: translation elongation factor G
4.5e-97 323.8 3.9 1.9e-38 130.0 0.0 3.0 3 TIGR00490 aEF-2: translation elongation factor aEF-2
4.2e-69 231.2 4.8 1.1e-37 127.6 0.1 3.2 3 TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
3e-59 198.8 0.6 4.3e-59 198.3 0.6 1.1 1 TIGR00503 prfC: peptide chain release factor 3
2e-54 182.9 2.6 2e-29 100.4 0.0 3.7 3 TIGR01393 lepA: elongation factor 4
7.7e-43 144.1 0.3 1.3e-42 143.3 0.3 1.4 1 TIGR00231 small_GTP: small GTP-binding protein domain
2e-16 57.7 1.0 4.6e-16 56.5 0.2 1.9 3 TIGR00485 EF-Tu: translation elongation factor Tu
1.2e-14 51.5 0.6 3.8e-14 49.9 0.3 1.9 2 TIGR00483 EF-1_alpha: translation elongation factor EF-1, su
7.1e-13 46.1 3.5 3.5e-12 43.8 2.1 2.4 2 TIGR00487 IF-2: translation initiation factor IF-2
1.6e-10 38.3 0.3 3e-10 37.4 0.3 1.4 1 TIGR00475 selB: selenocysteine-specific translation elongati
3.7e-08 30.8 0.1 1.1e-07 29.3 0.0 1.8 2 TIGR02034 CysN: sulfate adenylyltransferase, large subunit
8.6e-08 29.0 0.4 1.7e-07 28.0 0.1 1.5 2 TIGR00491 aIF-2: translation initiation factor aIF-2
4.2e-06 24.0 0.0 6.1e-05 20.1 0.0 2.2 2 TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
0.00079 16.7 0.6 0.006 13.8 0.4 2.4 2 TIGR03680 eif2g_arch: translation initiation factor 2, gamma
Domain annotation for each model (and alignments):
>> TIGR00484 EF-G: translation elongation factor G
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1193.9 7.4 0 0 1 689 [. 1 687 [. 1 689 [] 1.00
Alignments for each domain:
== domain 1 score: 1193.9 bits; conditional E-value: 0
TIGR00484 1 martvdleklrniGisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrv 98
mar+ +l ++rniGi+ahidaGktttterilf+tgkihkige+h+Ga++mdwm qe+erGititsaatt++wk+ r n+idtPGhvdftveverslrv
MMSYN1_0150 1 MAREYSLLNTRNIGIMAHIDAGKTTTTERILFHTGKIHKIGETHEGASQMDWMAQEQERGITITSAATTAFWKNTRFNIIDTPGHVDFTVEVERSLRV 98
9************************************************************************************************* PP
TIGR00484 99 ldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlksrldvnavplqlpiGaedkfeGvidlvkkkayffeedkgekaee 196
ldGavavld ++Gvepq+etvwrqa++y+vPrivfvnkmdk+Ga+f ++v+++ +rl+++a p+qlpiGae++f+G+idlv++kay f+++ +e+++e
MMSYN1_0150 99 LDGAVAVLDGQSGVEPQTETVWRQATNYKVPRIVFVNKMDKTGADFIYSVKTIGDRLGAKAAPIQLPIGAEENFTGIIDLVEMKAYEFDGKPEENYKE 196
************************************************************************************************** PP
TIGR00484 197 keiPedlkeeakelreklveavaeldeelmekyleGeeltieeikkairkgvlalelvpvlvGsafknkGvqllldavvdylPsPvdvkaikaidedt 294
eiP +l+e+akelr++lve ++e deel+ k+l+G e++i e+k+airkgv++ +++pvl GsafknkGv+llldavvdylPsP d+++ik+i +
MMSYN1_0150 197 IEIPTNLLEQAKELRAHLVEVAVEYDEELLMKFLDGGEISISELKSAIRKGVINADFFPVLAGSAFKNKGVKLLLDAVVDYLPSPLDIPSIKGILPT- 293
***********************************************************************************************99. PP
TIGR00484 295 ekeielkasddepfvalafkvatdpfvgkltfvrvysGvlksGsevlnsrkekkervgrlvkmhankreeieevraGdiaaliGlkdtttGdtlcdek 392
+e+e++a+d epf+alafkv+tdpfvgkltf+rvysG+l +Gs+vlns+k++kervgr+++mhan+r eieev++Gdiaa++Glk+tttGdtlcdek
MMSYN1_0150 294 GEEVERHADDTEPFSALAFKVMTDPFVGKLTFFRVYSGILTKGSYVLNSTKQQKERVGRILQMHANNRTEIEEVYSGDIAAAVGLKNTTTGDTLCDEK 391
99************************************************************************************************ PP
TIGR00484 393 aevilesmefpePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkrefkvevnvGkPqvayretirkkae 490
e+ilesm fpePvi+la+ePktkadqekm+ial+klaeedPtf+++td+e+gqtiiaGmGelhldiivdr+kref+v +nvG+Pqv+yreti+ +
MMSYN1_0150 392 GEIILESMVFPEPVIQLALEPKTKADQEKMSIALSKLAEEDPTFRTYTDDETGQTIIAGMGELHLDIIVDRMKREFNVATNVGAPQVSYRETIKLPGK 489
************************************************************************************************** PP
TIGR00484 491 vegkyakqsGGrGqyGhvvielePleegkgyefvneikGGviPreyipavdkGleealesGvlaGyPvvdikvtlfdGsyhdvdsselafklaaslal 588
egky+kqsGGrG yGhvvie+eP+++ kg+e+v++i+GG++ +eyi++ Gle+al++Gv+aGyP++d+k+t+ dGs h+vds+e+a+k+aas+al
MMSYN1_0150 490 AEGKYIKQSGGRGSYGHVVIEFEPNKD-KGFEWVDKITGGRVSKEYINSARVGLENALRNGVIAGYPMIDVKATIVDGSMHEVDSNEMAYKIAASMAL 586
***************************.8********************************************************************* PP
TIGR00484 589 keavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegseeresvkvvkaevPlsemfGyatdlrsatqGraeysmeflkyaevPksvaeeii 686
kea+kk +Pv+lePim+vev+vP+ey Gdv+G++s++rg+iegse+r++++++k++vPl+emfGyat+lrs+tqGr++y+m f++yae+Pk++a+eii
MMSYN1_0150 587 KEASKKMNPVVLEPIMNVEVTVPDEYYGDVMGNISSKRGIIEGSEQRGNAQTIKSKVPLTEMFGYATELRSFTQGRGNYTMIFSHYAEAPKAIADEII 684
************************************************************************************************** PP
TIGR00484 687 ekk 689
+k
MMSYN1_0150 685 KKS 687
996 PP
>> TIGR00490 aEF-2: translation elongation factor aEF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 107.7 0.1 3.3e-34 1.1e-31 19 154 .. 10 143 .. 4 159 .. 0.88
2 ! 130.0 0.0 6.1e-41 1.9e-38 244 470 .. 268 485 .. 259 539 .. 0.87
3 ! 86.4 0.2 9.5e-28 3e-25 562 710 .. 540 686 .. 517 689 .] 0.92
Alignments for each domain:
== domain 1 score: 107.7 bits; conditional E-value: 3.3e-34
TIGR00490 19 irnigivahidhgkttlsdnllagagmise..elageqlfldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgai 114
rnigi+ahid gktt ++ +l +g i + e +d+ qeqergiti++a + ++ n+idtpghvdf +v r++r +dga+
MMSYN1_0150 10 TRNIGIMAHIDAGKTTTTERILFHTGKIHKigETHEGASQMDWMAQEQERGITITSAATTAFW----KNTRFNIIDTPGHVDFTVEVERSLRVLDGAV 103
69*************************98744555666789*************999877654....45678************************** PP
TIGR00490 115 vvvcavegvmpqtetvlrqalkenvkpvlfinkvdrline 154
v++ gv pqtetv rqa + +v ++f+nk+d+ +
MMSYN1_0150 104 AVLDGQSGVEPQTETVWRQATNYKVPRIVFVNKMDKTGAD 143
***********************************97555 PP
== domain 2 score: 130.0 bits; conditional E-value: 6.1e-41
TIGR00490 244 qvvldmvikhlpspaeaqkyriaviwkgdlnseagkamlncdpegplavvitkivvdkhagevavgrlysgaikkgsevylvdskakariqqvgvymg 341
+++ld v+ +lpsp + + i kg l + + + ++d p++++ k++ d+ g+++ r+ysg + kgs v +++k+r+ ++ +
MMSYN1_0150 268 KLLLDAVVDYLPSPLDI-----PSI-KGILPTGE-EVERHADDTEPFSALAFKVMTDPFVGKLTFFRVYSGILTKGSYVLNSTKQQKERVGRILQMHA 358
6899**********974.....444.45444322.23346888999999999*****************************************9999* PP
TIGR00490 342 pervevdeipagnivavvglkeavageticstdkkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgel 439
+r e++e+ +g+i a vglk++++g+t+c+ + +i +e++ + epv+ +a+e k d k+ l k+a edpt + ++etg+ +i+gmgel
MMSYN1_0150 359 NNRTEIEEVYSGDIAAAVGLKNTTTGDTLCDEKGEII-LESMV-FPEPVIQLALEPKTKADQEKMSIALSKLAEEDPTFRTYTDDETGQTIIAGMGEL 454
*******************************988874.78875.79**************************************************** PP
TIGR00490 440 hleiivkkirekagvevetsepivvyretvt 470
hl+iiv++++++++v +++ p v yret+
MMSYN1_0150 455 HLDIIVDRMKREFNVATNVGAPQVSYRETIK 485
*****************************85 PP
== domain 3 score: 86.4 bits; conditional E-value: 9.5e-28
TIGR00490 562 egfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqilemkqegd 659
g+++a+rng +a +++ vk +vd +he a+ +++ +a + +pv+lep+ v ++vp+++ g ++ +i+++rg i +q g+
MMSYN1_0150 540 VGLENALRNGVIAGYPMIDVKATIVDGSMHEVDSNE--MAYKIAASMALKEASKKMNPVVLEPIMNVEVTVPDEYYGDVMGNISSKRGIIEGSEQRGN 635
599***************************965444..334447789*************************************************** PP
TIGR00490 660 mvtikakvpvaemfgfagairgategralwstefagfekvprelqeelvke 710
tik+kvp++emfg+a ++r+ t+gr +++ f+ + + p+ + +e++k+
MMSYN1_0150 636 AQTIKSKVPLTEMFGYATELRSFTQGRGNYTMIFSHYAEAPKAIADEIIKK 686
************************************************986 PP
>> TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.6 0.1 3.3e-40 1.1e-37 2 136 .. 11 147 .. 10 166 .. 0.93
2 ! 71.8 0.1 2.6e-23 8.4e-21 194 387 .. 300 482 .. 288 491 .. 0.88
3 ! 32.4 0.1 2.1e-11 6.8e-09 386 473 .. 591 677 .. 583 686 .. 0.91
Alignments for each domain:
== domain 1 score: 127.6 bits; conditional E-value: 3.3e-40
TIGR01394 2 rniaiiahvDhGkttlvDklLkqsgvlrekeevee..rvmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDa 97
rni i+ah+D Gktt +++L +g +++ e++e mD e+erGiti + +t+ +k+t+ ni+DtPGh Df ever l ++dg++ + D
MMSYN1_0150 11 RNIGIMAHIDAGKTTTTERILFHTGKIHKIGETHEgaSQMDWMAQEQERGITITSAATTAFWKNTRFNIIDTPGHVDFTVEVERSLRVLDGAVAVLDG 108
9****************************8888873356*********************************************************** PP
TIGR01394 98 seGplpqtrfvlkkalelglkpivvinkiDrpdarpeev 136
+ G+ pqt v ++a +++ iv +nk+D++ a+
MMSYN1_0150 109 QSGVEPQTETVWRQATNYKVPRIVFVNKMDKTGADFIYS 147
*******************************99986555 PP
== domain 2 score: 71.8 bits; conditional E-value: 2.6e-23
TIGR01394 194 kadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdivavaGledieigetiadaeeae 291
+ad+ ep+++l ++ +d ++G+++ rv++G + kg+ v +k +k r+ ++l++++ +r+ei+e+ +Gdi a +Gl++++ g+t++d++ +
MMSYN1_0150 300 HADDTEPFSALAFKVMTDPFVGKLTFFRVYSGILTKGSYVLNSTK---QQKERVGRILQMHANNRTEIEEVYSGDIAAAVGLKNTTTGDTLCDEKGEI 394
467889*******************************99876655...46788999999999************************************ PP
TIGR01394 292 alpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrre.GfelsvskPkvivke 387
l+++ eP +++ ++ + +k++ L++ +e++ ++r + +e+ + ++G GeLhl i+++ m+re +v+ P+v ++e
MMSYN1_0150 395 ILESMVFPEPVIQLALEPKTK---------ADQEKMSIALSKLAEEDPTFRTYTDDETGQTIIAGMGELHLDIIVDRMKREfNVATNVGAPQVSYRE 482
**************9987653.........3334455567788889999****99**************************334567******9997 PP
== domain 3 score: 32.4 bits; conditional E-value: 2.1e-11
TIGR01394 386 keidgkklePieeltidvpeefvgavieklgkrkgelkdmeskgsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkg 473
k+++ lePi ++ + vp+e+ g v+ ++++++g ++ e++g+ ++ k+P ++G+ te+ + t+G g + +f++y++
MMSYN1_0150 591 KKMNPVVLEPIMNVEVTVPDEYYGDVMGNISSKRGIIEGSEQRGNA-QTIKSKVPLTEMFGYATELRSFTQGRGNYTMIFSHYAEAPK 677
67778889*******************************9999995.56999*******************************98655 PP
>> TIGR00503 prfC: peptide chain release factor 3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 198.3 0.6 1.3e-61 4.3e-59 11 463 .. 10 475 .. 5 489 .. 0.82
Alignments for each domain:
== domain 1 score: 198.3 bits; conditional E-value: 1.3e-61
TIGR00503 11 rrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsal 108
r++ i++h daGktt te++l++ + i + G + s + dwm+ e++rGi+it++ ++++ n++dtpGh df+ + r+l d a+
MMSYN1_0150 10 TRNIGIMAHIDAGKTTTTERILFHTGKIHKIGETHEGAS----QMDWMAQEQERGITITSAATTAFWKNTRFNIIDTPGHVDFTVEVERSLRVLDGAV 103
6999***************************98876655....57*******************99******************************** PP
TIGR00503 109 mvidaakGveertrkllevtrlrdlpiltflnkldrdirdplelldevenelkintaaitypiGtGklfkGvyhllkdeiylyesGkgstikavrvvk 206
v+d Gve +t + + ++p + f+nk+d+ d + + + + l+ ++a+i+ piG+ + f G+ +l++ + y ++ ++ k++++
MMSYN1_0150 104 AVLDGQSGVEPQTETVWRQATNYKVPRIVFVNKMDKTGADFIYSVKTIGDRLGAKAAPIQLPIGAEENFTGIIDLVEMKAYEFDGKPEENYKEIEIPT 201
************************************************************************************9999999**99987 PP
TIGR00503 207 alddp..eldaavGedlaqelrdelel..veeas...aefd...keavlaGeltpvffGtalgnfGvdllldallqyaakpeardsdtrt......ve 288
l + el a + ++a e+ +el + +++ +e++ ++ v++ ++ pv+ G+a++n Gv+lllda+++y + p s ++ ve
MMSYN1_0150 202 NLLEQakELRAHL-VEVAVEYDEELLMkfLDGGEisiSELKsaiRKGVINADFFPVLAGSAFKNKGVKLLLDAVVDYLPSPLDIPSIKGIlptgeeVE 298
7755411455544.46888888887541133332111333311123456667789999***********************98877665411111144 PP
TIGR00503 289 aae...ekfsGfvfklqanmdpkhrdrvaflrvvsGkyekdmklkhvrtgkdvvlsdalkllagdresveeayaGdi...iGlhnhGtiqiGdtvt.. 378
e fs + fk+ + dp +++f+rv sG k+ + + ++ ++ + l++ a++r+++ee y+Gdi +Gl+n + Gdt+
MMSYN1_0150 299 RHAddtEPFSALAFKVMT--DP-FVGKLTFFRVYSGILTKGSYVLNSTKQQKERVGRILQMHANNRTEIEEVYSGDIaaaVGLKN---TTTGDTLCde 390
433122569999999854..56.6789**************999998888899***********************944455665...567***9622 PP
TIGR00503 379 qGeklkftgipnfapelfrrlrlkdplkqkqllkGlvelseeGav.qvlrsldendlivaavGvlqfdvvvarlkeeynveavyes 463
+Ge ++ ++ p + l k q ++ l++l ee + + + + i+a +G l +d++v r+k e+nv + + +
MMSYN1_0150 391 KGE-IILESMVFPEPVIQLALEPKTKADQEKMSIALSKLAEEDPTfRTYTDDETGQTIIAGMGELHLDIIVDRMKREFNVATNVGA 475
465.455555555677777888888999999*********99864144444444499***********************997655 PP
>> TIGR01393 lepA: elongation factor 4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.4 0.0 6.2e-32 2e-29 2 157 .. 9 162 .. 8 193 .. 0.87
2 ! 55.8 0.1 2e-18 6.4e-16 183 374 .. 300 483 .. 228 496 .. 0.75
3 ! 23.9 0.1 8.7e-09 2.8e-06 378 475 .. 575 672 .. 553 685 .. 0.79
Alignments for each domain:
== domain 1 score: 100.4 bits; conditional E-value: 6.2e-32
TIGR01393 2 kirnfsiiahidhGkstladrllektkavse...relkeqlldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceG 96
+ rn+ i+ahid Gk+t ++r+l +t+ +++ + + +d + e+erGiti + a + +k++ +n+idtPGhvdf+ ev rsl +G
MMSYN1_0150 9 NTRNIGIMAHIDAGKTTTTERILFHTGKIHKigeTHEGASQMDWMAQEQERGITITSAATTAFWKNT-----RFNIIDTPGHVDFTVEVERSLRVLDG 101
579********************9998876521155667789*******************999754.....79************************ PP
TIGR01393 97 alllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkeieeviGldaeea 157
a+ ++d Gve qt + a + ++ i +nk+d ad k i + +G +a+ +
MMSYN1_0150 102 AVAVLDGQSGVEPQTETVWRQATNYKVPRIVFVNKMDKTGADFIYSVKTIGDRLGAKAAPI 162
****************9999***********************99999******9988755 PP
== domain 2 score: 55.8 bits; conditional E-value: 2e-18
TIGR01393 183 kgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpkl.vkeeelkaGevGyliagikdvkdvkvGdtitsvkkp 279
+ d+++p al f + d++ G ++++rv++G ++kg + +++++ +v ++ ++ + ++ ee+ +G++ +a++ +k++ Gdt+ + k
MMSYN1_0150 300 HADDTEPFSALAFKVMTDPFVGKLTFFRVYSGILTKGSYVLNSTKQQKERVGRILQMHANNrTEIEEVYSGDI---AAAV-GLKNTTTGDTLCDEK-- 391
34677899******************************99888888888888877666665456666666665...4444.4678899**997655.. PP
TIGR01393 280 akealpGfkkvkpvvfaglyPidsedyeelrdaleklklndasltyekesskalGfGfrcGflGllhleviqerlerefdldliataPsvvykvk 374
+ l+ +pv+ +l P ++d e++ al kl+ +d ++ + + G + +G +G lhl++i +r++ref++ + aP+v+y+ +
MMSYN1_0150 392 GEIILESMVFPEPVIQLALEPKTKADQEKMSIALSKLAEEDPTF--RTYTDDETGQTIIAG-MGELHLDIIVDRMKREFNVATNVGAPQVSYRET 483
566777777789**************************999875..455556668877777.6*****************************854 PP
== domain 3 score: 23.9 bits; conditional E-value: 8.7e-09
TIGR01393 378 gevievenPselpeeek..ieeveePyvkatiivpeeylgailelcqekrgvlkkleyldkervelvyelPlaeivldffdklksiskGyasldyeli 473
+ +++ ++l e++k v eP++++++ vp+ey g ++ + +krg+++ e + + +++ ++Pl+e+ + + +l+s ++G + + +
MMSYN1_0150 575 EMAYKIAASMALKEASKkmNPVVLEPIMNVEVTVPDEYYGDVMGNISSKRGIIEGSEQRG-NAQTIKSKVPLTEM-FGYATELRSFTQGRGNYTMIFS 670
445566666666654331034589******************************999988.67899********5.899*********9887665555 PP
TIGR01393 474 ey 475
+y
MMSYN1_0150 671 HY 672
55 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 143.3 0.3 4.2e-45 1.3e-42 2 163 .. 9 180 .. 8 181 .. 0.98
Alignments for each domain:
== domain 1 score: 143.3 bits; conditional E-value: 4.2e-45
TIGR00231 2 keikivivGhvdvGKstLlnsllknkisiteskp...gvtrdyvteqieedGkt............ykvnllDTaGqedfdairrlyvreverslevv 84
++++i+i++h+d+GK+t+++++l+ ++ i+++++ g++++++++q++e+G+t +++n++DT+G++df + eversl+v+
MMSYN1_0150 9 NTRNIGIMAHIDAGKTTTTERILFHTGKIHKIGEtheGASQMDWMAQEQERGITitsaattafwknTRFNIIDTPGHVDF-------TVEVERSLRVL 99
589***************************9999999*******************************************.......*********** PP
TIGR00231 85 divilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.dlktkvkslfaklnaep.iielsaetgknidklfklve 163
d++++vld ++g+e+qt++++++a++++vp+i++vnK+D+ + d+ ++vk++ ++l+a++ i+l++ +++n++++++lve
MMSYN1_0150 100 DGAVAVLDGQSGVEPQTETVWRQATNYKVPRIVFVNKMDKTGaDFIYSVKTIGDRLGAKAaPIQLPIGAEENFTGIIDLVE 180
***********************************************************999****************997 PP
>> TIGR00485 EF-Tu: translation elongation factor Tu
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.5 0.2 1.4e-18 4.6e-16 14 141 .. 12 140 .. 5 151 .. 0.88
2 ? -2.2 0.0 0.97 3.1e+02 46 75 .. 183 211 .. 178 232 .. 0.81
3 ? -3.4 0.0 2.2 6.9e+02 162 201 .. 248 279 .. 214 282 .. 0.59
Alignments for each domain:
== domain 1 score: 56.5 bits; conditional E-value: 1.4e-18
TIGR00485 14 nvgtighvdhgkttltaaittvlakegk..aaakkydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaa 109
n+g + h+d gktt t i k k + + +++d +e++rgiti++a ++ + +d pgh d+ ++ +dga+ v+ +
MMSYN1_0150 12 NIGIMAHIDAGKTTTTERILFHTGKIHKigETHEGASQMDWMAQEQERGITITSAATTAFWKNTRFNIIDTPGHVDFTVEVERSLRVLDGAVAVLDGQ 109
9***************999766554433215566789****************99998888888999******************************* PP
TIGR00485 110 dgpmpqtrehillarqvgvpklvvflnkvdlv 141
g+ pqt a + vp++ vf+nk+d
MMSYN1_0150 110 SGVEPQTETVWRQATNYKVPRI-VFVNKMDKT 140
********************97.69****976 PP
== domain 2 score: -2.2 bits; conditional E-value: 0.97
TIGR00485 46 kydeidkapeekargitintahveyetekr 75
+y e d pee+ + i i t +e e r
MMSYN1_0150 183 AY-EFDGKPEENYKEIEIPTNLLEQAKELR 211
44.68999***********99999887766 PP
== domain 3 score: -3.4 bits; conditional E-value: 2.2
TIGR00485 162 dfpgddvpivrgsalkalegdaeweekilelmeavdeyip 201
+ d p+++gsa+k + ++ l++av +y+p
MMSYN1_0150 248 VINADFFPVLAGSAFKN--------KGVKLLLDAVVDYLP 279
44555566666666553........334445555555555 PP
>> TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.9 0.3 1.2e-16 3.8e-14 2 154 .. 2 140 .. 1 150 [. 0.82
2 ? -1.6 0.0 0.52 1.7e+02 241 288 .. 320 371 .. 313 390 .. 0.72
Alignments for each domain:
== domain 1 score: 49.9 bits; conditional E-value: 1.2e-16
TIGR00483 2 akekehl...nvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghr 96
a+e + l n+ ++ h+d+gk+t++ r+l+++g+i++ + +e+ a +d + +e+erg+ti a + + ++ i+d+pgh
MMSYN1_0150 2 AREYSLLntrNIGIMAHIDAGKTTTTERILFHTGKIHK--IGE-THEG----------ASQMDWMAQEQERGITITSAATTAFWKNTRFNIIDTPGHV 86
5565555111567778******************9975..431.2333..........445999***********9999888888999********** PP
TIGR00483 97 dfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsv 154
df ++ d av v+++++g v+pqt a + + iv +nkmd+
MMSYN1_0150 87 DFTVEVERSLRVLDGAVAVLDGQSG---VEPQTETVWRQATNYKVPR-IVFVNKMDKT 140
*********************9999...*****87777777777776.688*****86 PP
== domain 2 score: -1.6 bits; conditional E-value: 0.52
TIGR00483 241 vgtvpvgrvetgvlkkgekvvfepagvsgevksi.emhhe...qieqaepgd 288
vg + rv +g+l kg+ v+ v i +mh + +ie+ + gd
MMSYN1_0150 320 VGKLTFFRVYSGILTKGSYVLNSTKQQKERVGRIlQMHANnrtEIEEVYSGD 371
6777888999999999999998888777777554277754222466677766 PP
>> TIGR00487 IF-2: translation initiation factor IF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.8 2.1 1.1e-14 3.5e-12 90 203 .. 13 143 .. 8 150 .. 0.74
2 ? -0.3 0.0 0.24 77 248 331 .. 293 381 .. 286 422 .. 0.80
Alignments for each domain:
== domain 1 score: 43.8 bits; conditional E-value: 1.1e-14
TIGR00487 90 vtimGhvDhGktsLLdsi.....rktk.............vaegeaGGitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaad 169
+ im h+D Gkt+ + i + k +a+++ Git a + ++ +DtPGh ft r +v D +v v+ +
MMSYN1_0150 13 IGIMAHIDAGKTTTTERIlfhtgKIHKigethegasqmdwMAQEQERGITITSAATTAFWKNT-RFNIIDTPGHVDFTVEVERSLRVLDGAVAVLDGQ 109
568888888888765544222222223001111111111134445557887777766665555.7999****************************** PP
TIGR00487 170 DGvkpqtieaiehakaanvPiivainkiDkpean 203
Gv+pqt+ a + +vP iv++nk+Dk a+
MMSYN1_0150 110 SGVEPQTETVWRQATNYKVPRIVFVNKMDKTGAD 143
******************************9876 PP
== domain 2 score: -0.3 bits; conditional E-value: 0.24
TIGR00487 248 qseveelkanknkqakgvvieakldkgrGpvatvlvqeGtLkvGDivvvgaa.....yGkvramidekGksvkeagPsiaveilGlsev 331
+e +e +a + ++ + ++ +d G ++ v +G L++G v+ ++ G++ m+ ++ ++++e+ + +Gl++
MMSYN1_0150 293 TGEEVERHADDTEPFSALAFKVMTDPFVGKLTFFRVYSGILTKGSYVLNSTKqqkerVGRILQMHANNRTEIEEVYSGDIAAAVGLKNT 381
5566666777777777888888889999999999999*******999976532222289999***********9998888888888764 PP
>> TIGR00475 selB: selenocysteine-specific translation elongation factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.4 0.3 9.3e-13 3e-10 2 121 .. 12 145 .. 11 153 .. 0.85
Alignments for each domain:
== domain 1 score: 37.4 bits; conditional E-value: 9.3e-13
TIGR00475 2 iiataGHvDHGKttLlkal...tg.id...........adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdad 84
+i+++ H+D GKtt + tg i+ d + +E+ RG+ti + ++++ ++iD PGH f ++ ++ +d+a+ v d +
MMSYN1_0150 12 NIGIMAHIDAGKTTTTERIlfhTGkIHkigethegasqMDWMAQEQERGITITSAATTAFWKNTRFNIIDTPGHVDFTVEVERSLRVLDGAVAVLDGQ 109
588899******9976655333331225556668866667789*********99988888899*********************************** PP
TIGR00475 85 eGvkaqtkEHLavlkllgikelivvltKaDrvdeeev 121
Gv +qt+ + + +++ iv ++K+D++ + +
MMSYN1_0150 110 SGVEPQTETVWRQATNYKVP-RIVFVNKMDKTGADFI 145
********************.99********977655 PP
>> TIGR02034 CysN: sulfate adenylyltransferase, large subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.3 0.0 3.3e-10 1.1e-07 51 147 .. 46 141 .. 17 151 .. 0.87
2 ? -3.3 0.0 2.5 8.2e+02 234 269 .. 328 358 .. 324 378 .. 0.67
Alignments for each domain:
== domain 1 score: 29.3 bits; conditional E-value: 3.3e-10
TIGR02034 51 lallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvd 147
a +d ++ e+e+giti a + +f + dtPGh+ +t ++ + d av ++d + Gv qt a+ + ++v vnk+d ++
MMSYN1_0150 46 GASQMDWMAQEQERGITITSAATTAFWKNTRFNIIDTPGHVDFTVEVERSLRVLDGAVAVLDGQSGVEPQTETVWRQATNYKVPRIV-FVNKMDKTG 141
56678999**********98877666666779999**************************************9999**99999976.59****876 PP
== domain 2 score: -3.3 bits; conditional E-value: 2.5
TIGR02034 234 GyaGtiasGsvkvGdevvvlpsgresrvarivtfdg 269
sG +++G v + ++ rv ri++++
MMSYN1_0150 328 V-----YSGILTKGSYVLNSTKQQKERVGRILQMHA 358
4.....455566666666666667777777776654 PP
>> TIGR00491 aIF-2: translation initiation factor aIF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.0 0.1 5.4e-10 1.7e-07 8 133 .. 14 139 .. 8 143 .. 0.80
2 ? -3.5 0.0 1.9 6.1e+02 486 526 .. 327 371 .. 323 393 .. 0.62
Alignments for each domain:
== domain 1 score: 28.0 bits; conditional E-value: 5.4e-10
TIGR00491 8 avlGhvdhGkttlldkirktrvakreaGgitqhiGaseiPidvikrlcgdllkk..lkidlkiPGllvidtPGheaftslrkrGGaladiailvvdin 103
++ h+d Gktt ++i + G+ h Gas++ ++ g + + + k + +idtPGh ft r + d a+ v+d +
MMSYN1_0150 14 GIMAHIDAGKTTTTERILFHTGKIHKIGE--THEGASQMDWMAQEQERGITITSaaTTAFWKNTRFNIIDTPGHVDFTVEVERSLRVLDGAVAVLDGQ 109
67899999999999999877666666776..4778888876666554443332200344456677889****************************** PP
TIGR00491 104 eGfkpqtveavnilrqlktPfvvaankidr 133
G++pqt+ ++k+P +v nk+d+
MMSYN1_0150 110 SGVEPQTETVWRQATNYKVPRIVFVNKMDK 139
*****************************7 PP
== domain 2 score: -3.5 bits; conditional E-value: 1.9
TIGR00491 486 evlaGvlrvgapli...kedGekvGevreikdrge.nvkeakagk 526
+v +G+l +g ++ k+ e+vG + +++ +++ +++e++ g+
MMSYN1_0150 327 RVYSGILTKGSYVLnstKQQKERVGRILQMHANNRtEIEEVYSGD 371
567777777766552224566778888888765441455555554 PP
>> TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.1 0.0 1.9e-07 6.1e-05 31 126 .. 58 145 .. 53 208 .. 0.69
2 ? 1.0 0.0 0.12 38 135 162 .. 253 280 .. 233 326 .. 0.60
Alignments for each domain:
== domain 1 score: 20.1 bits; conditional E-value: 1.9e-07
TIGR03594 31 tpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnkkeeae 126
+ g+T ++a +k+++f++iDT+G + + ++e +++ d + v+d+++g++++ e++ + ++k p i+ vNK+d++ ++
MMSYN1_0150 58 ERGITITSAATTAFWKNTRFNIIDTPGHVD--------FTVEVERSLRVLDGAVAVLDGQSGVEPQTETVWRQATNYKVPRIVFVNKMDKTGADFI 145
567777778888889999999999999833........3344556666677778888999999999999999999999999999999998866554 PP
== domain 2 score: 1.0 bits; conditional E-value: 0.12
TIGR03594 135 lgevlaiSaehgrgikdLldeileelpe 162
+ vla Sa +++g+k Lld++++ lp+
MMSYN1_0150 253 FFPVLAGSAFKNKGVKLLLDAVVDYLPS 280
3334444566666666666666666554 PP
>> TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.8 0.4 1.9e-05 0.006 6 146 .. 11 138 .. 7 196 .. 0.70
2 ? -1.9 0.0 1.1 3.5e+02 169 199 .. 251 281 .. 237 286 .. 0.80
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 1.9e-05
TIGR03680 6 vniglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaa 103
nig++ h+D Gktt+++ + + h + + G ++ + e+ + +t ++ +++ + ++D+PGh + + +
MMSYN1_0150 11 RNIGIMAHIDAGKTTTTERILFHTGKIH-----KIGETHEGASQMDWMAQEQER---GITITSAATT---AFWKNTRFNIIDTPGHVDFTVEVERSLR 97
69*************9998765444444.....333334444555554444433...4444443332...2334567899********999999999* PP
TIGR03680 104 lmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkid 146
++dga+ v++ + v +pqt+ + iv v nk+d
MMSYN1_0150 98 VLDGAVAVLDGQSGV-EPQTETVWRQATNYKVPRIVFV-NKMD 138
*************99.9***988887777777777665.7776 PP
== domain 2 score: -1.9 bits; conditional E-value: 1.1
TIGR03680 169 aenapiiPvsalkkvnidvllealekeiptp 199
a+ p++ sa k+ +++ll+a+ +++p p
MMSYN1_0150 251 ADFFPVLAGSAFKNKGVKLLLDAVVDYLPSP 281
556688888*****************99988 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (689 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 124 (0.0276292); expected 89.8 (0.02)
Passed bias filter: 81 (0.0180481); expected 89.8 (0.02)
Passed Vit filter: 20 (0.00445633); expected 4.5 (0.001)
Passed Fwd filter: 14 (0.00311943); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 14 [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.26
# Mc/sec: 3805.51
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0150 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0151 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0151.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0151/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0151 [L=395]
Description: EF-Tu: translation elongation factor Tu 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-219 726.9 6.0 1.2e-219 726.8 6.0 1.0 1 TIGR00485 EF-Tu: translation elongation factor Tu
2e-57 193.1 1.5 2.4e-57 192.9 1.5 1.1 1 TIGR00475 selB: selenocysteine-specific translation elongati
2.3e-57 192.3 7.5 1.2e-55 186.7 7.5 2.8 1 TIGR00483 EF-1_alpha: translation elongation factor EF-1, su
3.3e-39 133.2 3.7 1.5e-38 131.0 3.7 2.1 1 TIGR03680 eif2g_arch: translation initiation factor 2, gamma
2.5e-36 123.1 1.7 3e-36 122.8 1.7 1.0 1 TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
3.5e-28 96.7 0.8 1.4e-27 94.7 0.7 2.0 2 TIGR02034 CysN: sulfate adenylyltransferase, large subunit
4.1e-24 82.8 0.5 6e-24 82.3 0.5 1.1 1 TIGR01393 lepA: elongation factor 4
5.4e-20 69.6 4.7 2e-19 67.7 4.7 1.7 1 TIGR00487 IF-2: translation initiation factor IF-2
1.3e-18 64.4 1.9 6.2e-18 62.2 0.6 1.9 2 TIGR00490 aEF-2: translation elongation factor aEF-2
1.3e-17 61.1 0.3 2.2e-17 60.4 0.3 1.2 1 TIGR00484 EF-G: translation elongation factor G
3.9e-15 54.0 0.3 9.6e-15 52.7 0.3 1.6 1 TIGR00231 small_GTP: small GTP-binding protein domain
6.1e-12 42.7 0.2 3.5e-11 40.2 0.2 1.9 2 TIGR00503 prfC: peptide chain release factor 3
4.2e-10 36.6 0.4 8.9e-10 35.5 0.4 1.4 1 TIGR00491 aIF-2: translation initiation factor aIF-2
0.0036 15.5 0.1 0.4 8.9 0.0 2.2 2 TIGR02528 EutP: ethanolamine utilization protein, EutP
------ inclusion threshold ------
0.027 11.4 0.0 0.092 9.7 0.0 1.9 1 TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
Domain annotation for each model (and alignments):
>> TIGR00485 EF-Tu: translation elongation factor Tu
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 726.8 6.0 4e-222 1.2e-219 1 392 [. 1 393 [. 1 395 [] 0.99
Alignments for each domain:
== domain 1 score: 726.8 bits; conditional E-value: 4e-222
TIGR00485 1 makekferskphvnvgtighvdhgkttltaaittvlakegkaaakkydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaq 98
make+f+rs phvn+gtighvdhgkttltaait+vl+++g+a++k+y +id+apee++rgitintahvey+t++rhyahvdcpghadyvknmitgaaq
MMSYN1_0151 1 MAKEQFDRSLPHVNIGTIGHVDHGKTTLTAAITKVLSEQGNAEFKDYANIDNAPEERERGITINTAHVEYKTANRHYAHVDCPGHADYVKNMITGAAQ 98
89************************************************************************************************ PP
TIGR00485 99 mdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrellseydfpgddvpivrgsalkalegdaeweekilelmeav 196
mdgailvv+a+dgpmpqtrehill+rqvgvpk+vvflnk+d+v+d+e+++lve+e+r+ll+eydf+g+ p++rgsal al+gd++w+ +i elm+av
MMSYN1_0151 99 MDGAILVVAATDGPMPQTREHILLSRQVGVPKIVVFLNKCDMVEDDEMIDLVEMEIRDLLTEYDFDGEGAPVIRGSALGALNGDSKWTGAINELMAAV 196
************************************************************************************************** PP
TIGR00485 197 deyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglk.etkkttvtgvemfkklldeakagdnvgvllrgvkkeeiergqvl 293
deyiptp+r+ dk+fl+++edvf+itgrgtv+tgrverg+vkv+eevei+glk e +kt+vtg+emf+klld a agdnvg+llrgv+++ +ergqvl
MMSYN1_0151 197 DEYIPTPQRDADKTFLMPVEDVFTITGRGTVATGRVERGTVKVNEEVEIIGLKeEPTKTVVTGLEMFRKLLDFAVAGDNVGALLRGVDRHSVERGQVL 294
*****************************************************6679***************************************** PP
TIGR00485 294 akpgsikphkkfeaevyvlkkeeggrhtpffsgyrpqfylrttdvtgkielpegvemvlpgdnvkltvelispvaleeglrfaireggrtvgagvvsk 391
akpg+ikph+ ++a vy+l++eeggrh+pff++yrpqfy+rttdvtg+++lpeg++mv+pgdnv+++++li+pva+eeg++f+ireggrt+gag+v +
MMSYN1_0151 295 AKPGTIKPHTVLKASVYALTQEEGGRHKPFFNKYRPQFYFRTTDVTGEVTLPEGTDMVMPGDNVEMEIQLIKPVAVEEGTKFSIREGGRTIGAGTVIS 392
***********************************************************************************************987 PP
TIGR00485 392 i 392
i
MMSYN1_0151 393 I 393
7 PP
>> TIGR00475 selB: selenocysteine-specific translation elongation factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 192.9 1.5 7.9e-60 2.4e-57 1 336 [. 13 391 .. 13 395 .] 0.80
Alignments for each domain:
== domain 1 score: 192.9 bits; conditional E-value: 7.9e-60
TIGR00475 1 viiataGHvDHGKttLlkaltgid.............adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdade 85
v+i+t GHvDHGKttL a+t + d+ PeE+ RG+ti+ + ++ ++ +D PGH ++kn+++g + +d+a+Lvv+a +
MMSYN1_0151 13 VNIGTIGHVDHGKTTLTAAITKVLseqgnaefkdyanIDNAPEERERGITINTAHVEYKTANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD 110
689*******************977889999999988899********************************************************** PP
TIGR00475 86 GvkaqtkEHLavlkllgikelivvltKaDrv.deeevkevEeelkeileeeeflknak.ivkvsAktG..qG....ieeLkkelknLlesldak..dk 173
G+++qt+EH+++ +++g+++++v l+K D v d+e ++ vE+e++++l e+ f + ++ sA G +G +++ + ++ + e + + d
MMSYN1_0151 111 GPMPQTREHILLSRQVGVPKIVVFLNKCDMVeDDEMIDLVEMEIRDLLTEYDFDGEGApVIRGSAL-GalNGdskwTGAINELMAAVDEYIPTPqrDA 207
******************************9456789****************9875515555553.3123411223334444444444444333499 PP
TIGR00475 174 qkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepink...kvrvkalqaqnqsvekavAGqRialnladvdkeklkRGllilkpeepkkrvv 268
+k++ ++++ +F++ G Gtv tG + +G+vkv++e+ + ++ + k v l+ +++ + avAG+ ++ l +vd+++++RG + kp k + v
MMSYN1_0151 208 DKTFLMPVEDVFTITGRGTVATGRVERGTVKVNEEVEIIGLKEeptKTVVTGLEMFRKLLDFAVAGDNVGALLRGVDRHSVERGQVLAKPGTIKPHTV 305
**************************************9997622256799*********************************66667765555544 PP
TIGR00475 269 vk....lka......evklkelqklhifhgaketvgkvslledk.........lallvldeplilakgdklvlrdsaknllaGarvl 336
+k ++ + ++ + + + ++ ++g v+l e+ ++ l +p+ + +g k+ +r+ +++ aG v+
MMSYN1_0151 306 LKasvyALTqeeggrHKPFFNKYRPQFYFRTTDVTGEVTLPEGTdmvmpgdnvEMEIQLIKPVAVEEGTKFSIREGGRTIGAG-TVI 391
44110033312222233455555668999999999999999988899999987678999999999999999999955555444.455 PP
>> TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 186.7 7.5 3.9e-58 1.2e-55 6 422 .. 11 393 .. 1 395 [] 0.80
Alignments for each domain:
== domain 1 score: 186.7 bits; conditional E-value: 3.9e-58
TIGR00483 6 ehlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmi 103
+h+n+ ighvd+gk+tl+ ai + + e+g+a f+ +d+ eererg+ti+ ah ++t + + vd+pgh d++knmi
MMSYN1_0151 11 PHVNIGTIGHVDHGKTTLTA-------AITK-V-------LSEQGNAEFKDYANIDNAPEERERGITINTAHVEYKTANRHYAHVDCPGHADYVKNMI 93
79***************975.......3433.3.......347899999988899******************************************* PP
TIGR00483 104 tgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvgykpdevefipvsaykgdnvvkksen 201
tga+q d a+lvva++dg +pqtreh+ll+r +g+ +++v +nk d+v+ d+e + + e+ +ll ++ + + i sa+ n +
MMSYN1_0151 94 TGAAQMDGAILVVAATDG---PMPQTREHILLSRQVGVPKIVVFLNKCDMVE-DDEMIDLVEMEIRDLLTEYDFDGEGAPVIRGSALGALNGDS---- 183
*****************9...99****************************8.66788999999****************99888776555433.... PP
TIGR00483 202 apwyk.gktllealdk.leapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvf...epagvsgevksiemhheqieqaepgdnigfnv 294
w + l+ a+d+ + +p++ +dk + +p++dv++itg gtv grve g +k+ e+v + + + v +em + ++ a+ gdn+g +
MMSYN1_0151 184 -KWTGaINELMAAVDEyIPTPQRDADKTFLMPVEDVFTITGRGTVATGRVERGTVKVNEEVEIiglKEEPTKTVVTGLEMFRKLLDFAVAGDNVGALL 280
.3443146899***974688*************************************9998541225566788899********************** PP
TIGR00483 295 rgvskkdirrgdvagdadn.ppkvakeftaqivvlqhpgaitvgytpvldahtaqvacrfvellkkldprtgkv.keenpkflktgdaaivklkptkp 390
rgv ++ + rg+v ++ p+++ ++a + l + p ++ + q r +++ tg+v + e +++ gd + ++ kp
MMSYN1_0151 281 RGVDRHSVERGQVLAKPGTiKPHTV--LKASVYALTQE--EGGRHKPFFNKYRPQFYFRTTDV-------TGEVtLPEGTDMVMPGDNVEMEIQLIKP 367
*************999876544443..34555544332..23345666666666654443332.......3333134556667777777777777777 PP
TIGR00483 391 lviekvkeipklgrfairdmgqtvaagvvidv 422
+ +e+ +f+ir+ g+t++ag vi++
MMSYN1_0151 368 VAVEEG------TKFSIREGGRTIGAGTVISI 393
777653......35777777777777777766 PP
>> TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 131.0 3.7 5.2e-41 1.5e-38 3 319 .. 10 303 .. 8 390 .. 0.74
Alignments for each domain:
== domain 1 score: 131.0 bits; conditional E-value: 5.2e-41
TIGR03680 3 qpevniglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmls 100
p+vnig++GhvDhGkttl+ a+t v ++ + e k ya++ + +e +e + +t ++ + + + r+ + vD+PGh + m++
MMSYN1_0151 10 LPHVNIGTIGHVDHGKTTLTAAITKVLSEQGNAEFKD-------YANI--DNAPEERE-RGITINTA--HVE-YKTANRHYAHVDCPGHADYVKNMIT 94
699*******************************995.......7654..45555553.34444432..222.34588******************** PP
TIGR03680 101 GaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvskekalenye.eikefvkgtv..aenapiiPvsalkkvn........idv 187
Gaa mdga+Lv+aa++ P+pqt+eh+ +g+ +iv+ nk d+v+ +++++ e ei++++ ++ e ap+i sal n i+
MMSYN1_0151 95 GAAQMDGAILVVAATDG-PMPQTREHILLSRQVGVPKIVVFLNKCDMVEDDEMIDLVEmEIRDLLTEYDfdGEGAPVIRGSALGALNgdskwtgaINE 191
*************9986.8***********************************987659*****987645899********9999855555555778 PP
TIGR03680 188 llealekeiptperdldkdalllvarsfdvnkPGteieklkGGviGGslvqGklkvgdeieirPGikvekegkteyepiltevtsleagkkkveeakP 285
l++a++++iptp+rd dk +l+ v f + G v G + +G++kv++e+ei G+k e p +t vt le+ +k ++ a
MMSYN1_0151 192 LMAAVDEYIPTPQRDADKTFLMPVEDVFTITGR--------GTVATGRVERGTVKVNEEVEII-GLKEE--------PTKTVVTGLEMFRKLLDFAVA 272
****************************99765........568899**************95.66544........456666667776777776666 PP
TIGR03680 286 gGlvavgtkLDPaltkaDalaGqvvgkpgklppv 319
g v+ L + + Gqv++kpg++ p
MMSYN1_0151 273 GDNVGA---LLRGVDRHSVERGQVLAKPGTIKPH 303
665542...2223444445556666666666654 PP
>> TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 122.8 1.7 9.9e-39 3e-36 3 267 .. 14 277 .. 12 312 .. 0.86
Alignments for each domain:
== domain 1 score: 122.8 bits; conditional E-value: 9.9e-39
TIGR01394 3 niaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseG 100
ni i hvDhGkttl ++ k ++e + +D ererGiti + + k + + vD PGhaD+ ++ +dg++l+v a++G
MMSYN1_0151 14 NIGTIGHVDHGKTTLTAAITKVLSEQGNAEFKDYANIDNAPEERERGITINTAHVEYKTANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 111
999***************999988888888888899**************999999999999************************************ PP
TIGR01394 101 plpqtrfvlkkalelglkpivv.inkiDr..pdarpeevvdevfdLfvelgaddeqldfpvvyasakeGvasleeedesedleplfdailehvpaPka 195
p+pqtr + + ++g ivv +nk D +d+ ++ v e+ dL++e + d e pv+ +sa + ++ + +++l+ a+ e++p+P+
MMSYN1_0151 112 PMPQTREHILLSRQVGVPKIVVfLNKCDMveDDEMIDLVEMEIRDLLTEYDFDGEG--APVIRGSALGALNGDSKW--TGAINELMAAVDEYIPTPQR 205
******877777788876555439****7225677999************999985..699999998655544433..447***************** PP
TIGR01394 196 dkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaG 267
d+d+++ + v + + + G +a+grverG+vk +++v+++ +++ +k+ ++ l +f++l ++ + G
MMSYN1_0151 206 DADKTFLMPVEDVFTITGRGTVATGRVERGTVKVNEEVEIIGLKEEPTKTVVTGLEMFRKLLDFAVAGDNVG 277
*************************************************99999999998866655544444 PP
>> TIGR02034 CysN: sulfate adenylyltransferase, large subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 94.7 0.7 4.8e-30 1.4e-27 48 313 .. 44 310 .. 14 321 .. 0.81
2 ? -3.3 0.0 2.7 8.2e+02 303 338 .. 352 387 .. 341 393 .. 0.76
Alignments for each domain:
== domain 1 score: 94.7 bits; conditional E-value: 4.8e-30
TIGR02034 48 eidlallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidl 145
d+a +d ere+giti+ a+ ++t+ r++ d+PGh y +nm+tga+ +d a+l+v a G + qtr h +++ +G+ ++v+ +nk d+
MMSYN1_0151 44 FKDYAN-IDNAPEERERGITINTAHVEYKTANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLSRQVGVPKIVVFLNKCDM 140
456664.688889************************************************************************************* PP
TIGR02034 146 vdydeevfeeikkdylalaeklgvsdvtviPlsalkGdnvveksesmpWyeG.ptllevl.etveveesaeeeelrlpvqyvnrpnldfrGyaGtias 241
v+ de + + ++ + + l ++ ++ + P+ ++G + + ++W l+ + e + + ++ +++ + +pv+ v +G +
MMSYN1_0151 141 VEDDE-MIDLVEMEIRDLLTEYDFDG-EGAPV--IRGSALGALNGDSKWTGAiNELMAAVdEYIPTPQRDADKTFLMPVEDVFTITGRGTVATGRVER 234
*9775.67899999999888776543.33343..56666666667777865423577666256888889999**********9877766667899*** PP
TIGR02034 242 GsvkvGdevvvl...psgresrvarivtfdgelekaeaGeavtlvle..deidisrGdllaaadeapevadqfaael 313
G+vkv +ev ++ + +++ v+ + f + l+ a+aG+ v l+ d ++rG++la+ ++ + + ++a++
MMSYN1_0151 235 GTVKVNEEVEIIglkEEPTKTVVTGLEMFRKLLDFAVAGDNVGALLRgvDRHSVERGQVLAKPGTI-KPHTVLKASV 310
********99963324567889999*****************98876447788*******998774.3334444444 PP
== domain 2 score: -3.3 bits; conditional E-value: 2.7
TIGR02034 303 pevadqfaaelvwladeallpGksyklklgtkkvra 338
+ d++++e+ ++ a++ G +++++ g++++ a
MMSYN1_0151 352 VMPGDNVEMEIQLIKPVAVEEGTKFSIREGGRTIGA 387
556677778888888888889999999999888765 PP
>> TIGR01393 lepA: elongation factor 4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.3 0.5 2e-26 6e-24 5 261 .. 14 283 .. 12 296 .. 0.79
Alignments for each domain:
== domain 1 score: 82.3 bits; conditional E-value: 2e-26
TIGR01393 5 nfsiiahidhGkstladrllektkavserelkeq.lldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllv 101
n+ i h+dhGk+tl+ + + + + e+k+ +d+ ererGiti + ++yk+++ +y +d PGh+d+ ++ a +Ga+l+v
MMSYN1_0151 14 NIGTIGHVDHGKTTLTAAITKVLSEQGNAEFKDYaNIDNAPEERERGITINTAH--VEYKTAN-RHY--AHVDCPGHADYVKNMITGAAQMDGAILVV 106
8889***************999999999999986269*************8765..5787664.445..469************************** PP
TIGR01393 102 daaqGveaqtlanvylalekdl.eiiPvinkidlPsad..vervkkeieeviG...ldaee..ailvsa........ktGigieelleaivkkvpaPk 183
a+ G qt ++ l+ + + +i+ +nk d+ d ++ v+ ei++++ +d e +i+ sa k +i+el+ a+ + +p+P+
MMSYN1_0151 107 AATDGPMPQTREHILLSRQVGVpKIVVFLNKCDMVEDDemIDLVEMEIRDLLTeydFDGEGapVIRGSAlgalngdsKWTGAINELMAAVDEYIPTPQ 204
**************99999887579999******876533899*******99632233333114555542222222244557**************** PP
TIGR01393 184 gdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveev.gvltpklvkeeelkaGevGyliagi 261
d ++ + d + + rG v+ rv G++k++++++++ ++e + + v g+ ++++ + ++ +vG l g+
MMSYN1_0151 205 RDADKTFLMPVEDVFTITGRGTVATGRVERGTVKVNEEVEIIGLKEEPTKTVVtGLEMFRKLLDFAVAGDNVGALLRGV 283
*****************************************99877655444314444444444455555677777666 PP
>> TIGR00487 IF-2: translation initiation factor IF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 67.7 4.7 6.6e-22 2e-19 91 294 .. 16 243 .. 2 249 .. 0.75
Alignments for each domain:
== domain 1 score: 67.7 bits; conditional E-value: 6.6e-22
TIGR00487 91 timGhvDhGktsLLdsirktkvaegea.....G...........GitqhiGayqvekedkk.kitflDtPGheaftsmrarGakvtDivvlvvaadDG 171
+GhvDhGkt+L i k+ +g+a Git i +ve++ + + + +D PGh+ + + Ga D ++lvvaa DG
MMSYN1_0151 16 GTIGHVDHGKTTLTAAITKVLSEQGNAefkdyAnidnapeererGIT--INTAHVEYKTANrHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 111
348***********999886544443311111111111122222777..5566777654332799************999****************** PP
TIGR00487 172 vkpqtieaiehakaanvP.iivainkiDkpean..pDrvkqelseyglvpeewGGeti.fvpvsalkgkgid.eLldaiL.lqseveelkanknkqak 263
+pqt e i +++ +vP i+v++nk D e + D v+ e+ ++ l ++ Ge ++ sal + d + ai l++ v e+ +++ a
MMSYN1_0151 112 PMPQTREHILLSRQVGVPkIVVFLNKCDMVEDDemIDLVEMEIRDL-LTEYDFDGEGApVIRGSALGALNGDsKWTGAINeLMAAVDEYIPTPQRDAD 208
******************78899*****876652269999999876.5667899986527889999876555155666644999***********999 PP
TIGR00487 264 gvvi....eakldkgrGpvatvlvqeGtLkvGDiv 294
+ + ++ + grG+vat v++Gt+kv + v
MMSYN1_0151 209 KTFLmpveDVFTITGRGTVATGRVERGTVKVNEEV 243
87553333778889****************98765 PP
>> TIGR00490 aEF-2: translation elongation factor aEF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 62.2 0.6 2.1e-20 6.2e-18 20 162 .. 13 152 .. 2 160 .. 0.79
2 ? 1.4 0.0 0.051 15 297 330 .. 218 251 .. 204 298 .. 0.76
Alignments for each domain:
== domain 1 score: 62.2 bits; conditional E-value: 2.1e-20
TIGR00490 20 rnigivahidhgkttlsdnllagagmiseelageqlfldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvv 117
nig + h+dhgkttl+ + + + +d +e+ergiti++a v ey+ + +d pgh d+ ++ +dgai+vv
MMSYN1_0151 13 VNIGTIGHVDHGKTTLTAAITKVLSEQGNAEFKDYANIDNAPEERERGITINTAHV----EYKTANRHYAHVDCPGHADYVKNMITGAAQMDGAILVV 106
59**************987655444333333445666777789***********99....68888888899************9999999******** PP
TIGR00490 118 cavegvmpqt.etvlrqalkenvkpvlfinkvdrlinelkltaeel 162
+a +g mpqt e +l k v+f+nk d + ++ ++ e+
MMSYN1_0151 107 AATDGPMPQTrEHILLSRQVGVPKIVVFLNKCDMVEDDEMIDLVEM 152
*********9445555544555689*******98876655555555 PP
== domain 2 score: 1.4 bits; conditional E-value: 0.051
TIGR00490 297 ivvdkhagevavgrlysgaikkgsevylvdskak 330
+ g va+gr+ g++k +ev +++ k+
MMSYN1_0151 218 VFTITGRGTVATGRVERGTVKVNEEVEIIGLKEE 251
555556799*****************99987764 PP
>> TIGR00484 EF-G: translation elongation factor G
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 60.4 0.3 7.3e-20 2.2e-17 12 143 .. 14 144 .. 5 160 .. 0.87
Alignments for each domain:
== domain 1 score: 60.4 bits; conditional E-value: 7.3e-20
TIGR00484 12 niGisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldav 109
niG h+d Gktt+t i +++ e +d a +d e+erGiti +a + + + + +d PGh d+ ++ +dGa++v+ a
MMSYN1_0151 14 NIGTIGHVDHGKTTLTAAITKVLSEQ-GNAEFKD-YANIDNAPEERERGITINTAHVEYKTANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 109
9****************996544443.3356666.6899****************999999999********************************** PP
TIGR00484 110 aGvepqsetvwrqakkyevPri.vfvnkmdkiGan 143
G pq+ ++ +vP+i vf+nk+d + +
MMSYN1_0151 110 DGPMPQTREHILLSRQVGVPKIvVFLNKCDMVEDD 144
********99999999****9736******88655 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.7 0.3 3.2e-17 9.6e-15 4 127 .. 13 144 .. 11 163 .. 0.83
Alignments for each domain:
== domain 1 score: 52.7 bits; conditional E-value: 3.2e-17
TIGR00231 4 ikivivGhvdvGKstLlnsllknkisiteskp...gvtrdyvteqieedGkt............ykvnllDTaGqedfdairrlyvreverslevvdi 86
++i+ +Ghvd+GK+tL+ ++k s++ + + d ++e ++e+G+t +D +G++d+ v++ + +d+
MMSYN1_0151 13 VNIGTIGHVDHGKTTLTAAITKVL-SEQGNAEfkdYANIDNAPE-ERERGITintahveyktanRHYAHVDCPGHADY-------VKNMITGAAQMDG 101
69******************9998.6555545553444444454.888998899999998887788899*********.......************* PP
TIGR00231 87 vilvldveeglekqtkeiiheakkkgvp.iilvvnKiDlkd.d 127
+ilv+++ +g+++qt+e i ++ gvp i++++nK+D ++ d
MMSYN1_0151 102 AILVVAATDGPMPQTREHILLSRQVGVPkIVVFLNKCDMVEdD 144
*******************999999998577889****99841 PP
>> TIGR00503 prfC: peptide chain release factor 3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.2 0.2 1.2e-13 3.5e-11 14 159 .. 15 153 .. 7 163 .. 0.87
2 ? 1.1 0.0 0.082 25 241 295 .. 159 220 .. 145 223 .. 0.71
Alignments for each domain:
== domain 1 score: 40.2 bits; conditional E-value: 1.2e-13
TIGR00503 14 faiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvi 111
+ i h d Gkttlt + + + e G + a+ d e++rGi+i t+ ++++ ++ +d pGh d+ ++ + +d a++v+
MMSYN1_0151 15 IGTIGHVDHGKTTLTAAI---TKVLSEQGNAEF---KDYANIDNAPEERERGITINTAHVEYKTANRHYAHVDCPGHADYVKNMITGAAQMDGAILVV 106
56799**********876...466777776654...567899999***************************************************** PP
TIGR00503 112 daakGveertrkllevtrlrdlp.iltflnkldrdirdplelldevene 159
a+ G +tr + ++r +p i+ flnk d d e++d ve e
MMSYN1_0151 107 AATDGPMPQTREHILLSRQVGVPkIVVFLNKCDMVEDD--EMIDLVEME 153
******************999997889****9976655..556666655 PP
== domain 2 score: 1.1 bits; conditional E-value: 0.082
TIGR00503 241 keavlaGeltpvffGtalgnf........Gvdllldallqyaakpeardsdtrtveaaeekfs 295
e ++Ge +pv+ G+alg + ++ l+ a+ +y + p+ rd+d+ + + e+ f+
MMSYN1_0151 159 TEYDFDGEGAPVIRGSALGALngdskwtgAINELMAAVDEYIPTPQ-RDADKTFLMPVEDVFT 220
555678999********99873222222236778888899999997.7899988888888876 PP
>> TIGR00491 aIF-2: translation initiation factor aIF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.5 0.4 3e-12 8.9e-10 9 135 .. 17 142 .. 10 148 .. 0.85
Alignments for each domain:
== domain 1 score: 35.5 bits; conditional E-value: 3e-12
TIGR00491 9 vlGhvdhGkttlldkirktrvakreaGgitqhiGaseiPidvikrlcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGf 106
+GhvdhGkttl i k + ++ + + P + + ++ + +++ + +d PGh + + G a d ailvv +G
MMSYN1_0151 17 TIGHVDHGKTTLTAAITKV-LSEQGNAEFKDYANIDNAPEERERGITINTA-HVEYKTANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP 112
68************99764.3455566788888899999999999998877.5666666677889********************************* PP
TIGR00491 107 kpqtveavnilrqlktP.fvvaankidrip 135
pqt e + + rq+ +P vv nk d+++
MMSYN1_0151 113 MPQTREHILLSRQVGVPkIVVFLNKCDMVE 142
*****************445678***9986 PP
>> TIGR02528 EutP: ethanolamine utilization protein, EutP
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.4 0.0 0.033 10 5 21 .. 17 33 .. 14 56 .. 0.79
2 ! 8.9 0.0 0.0013 0.4 39 114 .. 79 154 .. 62 163 .. 0.71
Alignments for each domain:
== domain 1 score: 4.4 bits; conditional E-value: 0.033
TIGR02528 5 liGsvgcGkttLtqaLk 21
iG+v+ GkttLt a++
MMSYN1_0151 17 TIGHVDHGKTTLTAAIT 33
69***********9875 PP
== domain 2 score: 8.9 bits; conditional E-value: 0.0013
TIGR02528 39 aiDtPGeylenrryYsaLlvtaadadvivlvqsatdeesllspg..fasifak..eviglvtkidlaeadkeierakelL 114
+D PG + y + +++ aa+ d +lv atd + + ++s + + + + k d+ e+d+ i++++ ++
MMSYN1_0151 79 HVDCPG----HADYVKNMITGAAQMDGAILVVAATDGPMPQTREhiLLSRQVGvpKIVVFLNKCDMVEDDEMIDLVEMEI 154
577777....789999***************9999975433322113332222224455589************998776 PP
>> TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.7 0.0 0.00031 0.092 255 320 .. 96 162 .. 2 205 .. 0.64
Alignments for each domain:
== domain 1 score: 9.7 bits; conditional E-value: 0.00031
TIGR03594 255 ieradvvllvlDategiseqDlkiaglileegka.lvivvNKwDlvkdekeleelkkeleeklkflk 320
++ d ++lv+ at+g q + + l + g + +v+ +NK+D+v+d++ ++ ++ e+++ l+ +
MMSYN1_0151 96 AAQMDGAILVVAATDGPMPQTREHILLSRQVGVPkIVVFLNKCDMVEDDEMIDLVEMEIRDLLTEYD 162
3455556777777776666655555555555555145557888888777888888888877766654 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (395 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 187 (0.0416667); expected 89.8 (0.02)
Passed bias filter: 156 (0.0347594); expected 89.8 (0.02)
Passed Vit filter: 37 (0.00824421); expected 4.5 (0.001)
Passed Fwd filter: 15 (0.00334225); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 15 [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.25
# Mc/sec: 2268.95
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0151 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0154 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0154.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0154/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0154 [L=451]
Description: cytosol aminopeptidase family, catalytic domain protein 3=Putative Proteolysis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (451 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 202 (0.0450089); expected 89.8 (0.02)
Passed bias filter: 81 (0.0180481); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 3238.28
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0154 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0163 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0163.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0163/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0163 [L=896]
Description: alaRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-261 867.5 20.2 3.8e-261 867.0 20.2 1.2 1 TIGR00344 alaS: alanine--tRNA ligase
4.2e-94 314.4 20.9 9.8e-71 237.1 17.2 4.0 3 TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase
Domain annotation for each model (and alignments):
>> TIGR00344 alaS: alanine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 867.0 20.2 1.7e-264 3.8e-261 1 846 [. 8 892 .. 8 893 .. 0.93
Alignments for each domain:
== domain 1 score: 867.0 bits; conditional E-value: 1.7e-264
TIGR00344 1 evrqefLdfFkekgHevvksaslvprndptllltnagiaqfkdiftglvkppskrlvnaQkciRlnDlenVGrtarHhTlFemlgnfsfgdYfkeeai 98
++r+ +LdfF +k+H +++ sl+p++dp+ll++n+g+a++k++f+g+++pps+rl+n+Qk+iR+nD+enVG tarHhT+Femlgnfs+gdYfk+eai
MMSYN1_0163 8 QIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTNSQKAIRTNDIENVGVTARHHTMFEMLGNFSIGDYFKKEAI 105
59************************************************************************************************ PP
TIGR00344 99 efawelltee..lgldkerlvvtvyeeDeeayelWeke.gipaeriikldakdnfWelGdGpcGPctEiyyDr....vggkvgekelf..edddryvE 187
e awellt++ +++dk++l++tv++eD eay++W++ +i++++i +l +k nfW++G+GpcGP+tEi+yDr +++k+g +++ +++dry+E
MMSYN1_0163 106 ELAWELLTDKnyFDIDKDKLYITVFNEDTEAYNIWKDViKIDEDHIFRLSRKTNFWDVGQGPCGPNTEIFYDRgeiwDPNKIGPRLISddIENDRYIE 203
********88889**********************999**************************************88888999988888******** PP
TIGR00344 188 vwnlVFmqfnreadGnlkelpkkniDTGmGlERlvavlqdvptnydtdifkkliekieeitg..vkyasekagemdkkkveeqsalrviaDHvravaf 283
vwn+VF+qfn++++ n++elp+kniDTG+GlER++++ q++ptn++tdif + i+k+e++t+ +ky +++++ +kk+++ ++a++viaDH+ra +f
MMSYN1_0163 204 VWNIVFSQFNNDGNDNYTELPRKNIDTGAGLERFASIFQNTPTNFETDIFYPTIKKVEQLTNdqFKYSIDNYFNPNKKQTRINTAFKVIADHIRATVF 301
***********************************************************997336788899*************************** PP
TIGR00344 284 lladGvvpsnegrgYvlRrllRralrlakklelkeeFlkklvetlievledlypelkekeelveeileeEeerfakTlerGlrllekllkklekkeld 381
+++dGv p+n++rgY++Rrl+Rr+ +k+l++k++Fl+klv+ +ie+++++yp l +k++lve+ ++ Eee+f kTl++G lle+ +k k++++
MMSYN1_0163 302 AISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYPYLIDKKTLVEQTIKDEEEKFLKTLSKGYDLLENIIK--TKNTVS 397
*****************************************************************************************9..8***** PP
TIGR00344 382 gedlfkLydtyGfPvelteelaeekglkvdiegfeklmaeqrerskeakkdls.velqeeelanvkkateflgYee.leveakviglfedgklvdeie 477
+d++ L+++yGfP+e t e+ e ++++vdiegf+kl+++ +++ ++a+kdl+ ++q+e ++ k ++ef g++e +akvi +f+d+k+v++i
MMSYN1_0163 398 DKDALLLFESYGFPIEQTIEISELSNVTVDIEGFKKLLEQTKQATRNARKDLKaWDKQNELFTKLKVESEFTGWSEtSRDNAKVIYMFTDQKQVESI- 494
***************************************************99777788888999*********9956789****************. PP
TIGR00344 478 agqeavviLdktvfYaesGGqegDkGylikddakvrvedvqk.angvvvhvgeleegklkvgdkvkavidekrRleikknHsatHllhaalkkvlgeh 574
++qea+viLdkt+fYae+GGq +D+G +++d++k v dvq+ + ++++h ++++ g+lkv+d v+ +de+ R ++knHs+tH++h+al++vlg+
MMSYN1_0163 495 TDQEAFVILDKTPFYAEKGGQAADSGIIFNDQMKGFVIDVQQgPMHQNIHRIKVQ-GTLKVNDLVNCRVDEEKRIYTMKNHSGTHMIHYALREVLGTS 591
99********************************9999**999********9886.5***************************************** PP
TIGR00344 575 vkQaGslveakklrlDfshkravtkeelkkvEdlvneqilenlqvkvelmdleea.kkkgalalfgekygekvRvvsvgdvsvelCgGtHvenTgeig 671
v Q+Gs +++ lr+Df+ +r t++el k +lv e+i+++++ ++ + lee+ kk +ala+f eky+e vRv+++gd+s elCgGtHv+nT+ei+
MMSYN1_0163 592 VMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEKIKNKIDRQTYFCSLEESvKKHQALAFFTEKYDEIVRVIKFGDFSSELCGGTHVNNTSEIE 689
****************************************************99846779************************************** PP
TIGR00344 672 lfkIvkeegiaaGvrRieavageeaie............................llkeeekkLkeladkLkk......eleelakkveklkeelkal 735
f I+ e+ ++G Ri+ ++ ++++ +++L++ ++k+ +l +++ +klke k+
MMSYN1_0163 690 DFIITGIESKGSGLYRIKCLTSFKTVNeylneqfkiykdqaeiiidkynqnkdllK----NDQLENIYLQIKNitinkdNLLVIKDLLDKLKEINKDY 783
*************************999***********99999996555544321....22222222222220000002223444556********* PP
TIGR00344 736 rkeleslkkkiakqkaeelkekaetieelkvlvekvdakekkelkeladelkek.eeavvvlasveeekvklvaavsedvlkkkikanelikqvakvi 832
k+++ l + +k ++l+ + ++ + ++ e+ d + k+lk+lad+l++k ++ +v+l s + e+ +v+avs+ l++k+ka + +++
MMSYN1_0163 784 DKKVNDLITANKLLKYKDLTPSLNKDNINEIRLETTDL-NIKDLKQLADDLRNKyDDLIVILLSSTSENNFVVVAVSQS-LQNKYKAIDIFNNLEG-Y 878
*********99999999999988776666666666666.77*************8777888878788888899999997.577*********9988.8 PP
TIGR00344 833 ggkgggredlaqag 846
kggg ++laq++
MMSYN1_0163 879 ETKGGGNANLAQGK 892
99*********986 PP
>> TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.4 0.0 1.8e-16 4e-13 54 171 .. 2 114 .. 1 133 [. 0.87
2 ! 24.8 0.0 6.1e-10 1.4e-06 204 272 .. 202 264 .. 200 277 .. 0.86
3 ! 237.1 17.2 4.4e-74 9.8e-71 326 884 .. 286 893 .. 271 896 .] 0.78
Alignments for each domain:
== domain 1 score: 46.4 bits; conditional E-value: 1.8e-16
TIGR03683 54 kklelkemrekflsFFekkgHtrieryPvvaRWRdDvyLtiAsiadFqPfvtsGlvkPpanPlvisqPsiRlnDiDnvGrtGRHltsFemmaHhaFns 151
kkl+ +++r+ +l+FF +k+H +e ++ ++ ++ +a+ +P+ G Pp+ l+ sq +iR nDi+nvG+t RH t+Fem++ F
MMSYN1_0163 2 KKLSTNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYF-DGRKTPPSPRLTNSQKAIRTNDIENVGVTARHHTMFEMLGN--FSI 96
678899*************************988889999999******96.79999**********************************95..555 PP
TIGR03683 152 edkeiYWkdetvelckell.e 171
d Y+k e++el+ ell +
MMSYN1_0163 97 GD---YFKKEAIELAWELLtD 114
55...999*******999952 PP
== domain 2 score: 24.8 bits; conditional E-value: 6.1e-10
TIGR03683 204 lElAtLvFmqlkkkkegeieikgeryeeldlkivDtGYGlERlvWlsqgtPtvyda.vfgelveklleka 272
+E+ +vF q++++ +++y+el+ k +DtG GlER++ + q tPt +++ +f +++k+ + +
MMSYN1_0163 202 IEVWNIVFSQFNND-------GNDNYTELPRKNIDTGAGLERFASIFQNTPTNFETdIFYPTIKKVEQLT 264
57777788888777.......5789*****************************9669999999988765 PP
== domain 3 score: 237.1 bits; conditional E-value: 4.4e-74
TIGR03683 326 ekvy.aivDHtrtlafmlgdgivPsnvkeGYLaRlvlRrtlrllkelgleas.lselvemqleelkkeypelkenkdlildivelEeekyretlergk 421
++ + +i+DH r+ +f ++dg+ P n GY+ R ++Rr+ + kelg+++ l+ lv++ +e++k+ yp l ++k l+++ ++ Eeek+ +tl++g
MMSYN1_0163 286 NTAFkVIADHIRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAfLYKLVDSVIESMKEFYPYLIDKKTLVEQTIKDEEEKFLKTLSKGY 383
44452589******************************************9989******************************************** PP
TIGR03683 422 rivekllkekkeieldelvelYdshGippeivkeiakekgaevevPdnfyslvaerhekeeeeee......eekekeellkelp...eteklfyedpk 510
+++e ++k+k++++ ++ + l++s+G p+e ei + ++++v++ + f++l+ ++++ + ++++ + ++el + e f ++
MMSYN1_0163 384 DLLENIIKTKNTVSDKDALLLFESYGFPIEQTIEISELSNVTVDI-EGFKKLLEQTKQATRNARKdlkawdK-------QNELFtklKVESEFTGWSE 473
********************************************9.78999999998888887773433320.......2222223355555655555 PP
TIGR03683 511 kkefeakvlevvd............nevvldktlfYpegGGqpaDtGvlkaedkkvevvdvqkv.gdvilHkveeek.lkegeevkgeideerRlrlm 594
+ +akv++++ + v+ldkt fY+e GGq aD G++ ++ k v+dvq+ + +H+++ + lk + v++++dee+R+ m
MMSYN1_0163 474 TSRDNAKVIYMFTdqkqvesitdqeAFVILDKTPFYAEKGGQAADSGIIFNDQMKGFVIDVQQGpMHQNIHRIKVQGtLKVNDLVNCRVDEEKRIYTM 571
555566666655444455555557678**********************************98525677899997776******************** PP
TIGR03683 595 rhHtatHvllaaarkvlGeHvwqagaqkdtdkarlDitHykriseeeikeiErlaneivmenkpvkvkildrneAeekyGfklyqGGvppgkeiRvve 692
++H++tH++ a+r+vlG+ v q+g+ d++ r+D t+++ ++++e+ + +l+ e +++++ ++ ++ +e +k+ + ++ +Rv++
MMSYN1_0163 572 KNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEKIKNKIDRQTYFCSLEESVKKHQALAFFT-EKYDEIVRVIK 668
**************************************************************************999986544433.3678899**** PP
TIGR03683 693 iedvdveaCgGtHlkntgeiglikilkteriqdgveRlefaageaaieai.qeledllkesaeil.......k..vepeqlpe............... 765
+d+ e CgGtH++nt+ei + i+ +e+ g++R++ ++ ++++++ +e+ ++ k++aei+ k +++ql++
MMSYN1_0163 669 FGDFSSELCGGTHVNNTSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYlNEQFKIYKDQAEIIidkynqnKdlLKNDQLENiylqiknitinkdnl 766
**************************************988888777543144444444444443111111101112222222111111111111111 PP
TIGR03683 766 .tvkrffeewkeqrkeieklkekla.elkieeleseaekvgdvkv...vvekvdadeeelkeiaeklaek..ekvvvlvsekegkvkvvvssgekv.. 854
+k +++++ke +k+ +k + l+ k ++++ + ++++ ++ e++d + ++lk++a++l++k + +v+l s++++++ vvv+++++
MMSYN1_0163 767 lVIKDLLDKLKEINKDYDKKVNDLItANKLLKYKDLTPSLNKDNIneiRLETTDLNIKDLKQLADDLRNKydDLIVILLSSTSENNFVVVAVSQSLqn 864
13455666666666666554444330333344444444444444332156888999***********6542267888888888888888888887767 PP
TIGR03683 855 kvkagelvkeiakllggkggGkeklaqgkv 884
k+ka ++ +++ + ++kggG+ +laqgk
MMSYN1_0163 865 KYKAIDIFNNL-EGYETKGGGNANLAQGKF 893
88999999999.8899************86 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (896 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 314 (0.0699643); expected 89.8 (0.02)
Passed bias filter: 89 (0.0198307); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 4288.98
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0163 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0164 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0164.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0164/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0164 [L=164]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (164 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 506 (0.112745); expected 89.8 (0.02)
Passed bias filter: 187 (0.0416667); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1177.56
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0164 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0165 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0165.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0165/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0165 [L=414]
Description: AmiC? 2=Generic Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4e-22 76.9 11.0 6e-22 76.4 5.7 2.0 2 TIGR02789 nickel_nikB: nickel ABC transporter, permease subu
0.00018 19.2 4.8 0.00018 19.2 4.8 1.7 2 TIGR02790 nickel_nikC: nickel ABC transporter, permease subu
Domain annotation for each model (and alignments):
>> TIGR02789 nickel_nikB: nickel ABC transporter, permease subunit NikB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3.6 0.2 0.0037 8.3 4 75 .. 64 139 .. 61 146 .. 0.73
2 ! 76.4 5.7 2.7e-25 6e-22 94 307 .. 196 410 .. 185 413 .. 0.91
Alignments for each domain:
== domain 1 score: 3.6 bits; conditional E-value: 0.0037
TIGR02789 4 yilrrllllipvvlaasllvfvllrlsssd.....paedylrlseivptdeilaevreelGldqplyvqylswllka 75
y ++r+l + +l+ ++ +v++rl++ d p + ls+ d++l + + +G+ pl q l++l+++
MMSYN1_0165 64 YSFKRILYGLITLLLSIIILYVVIRLITPDtkylpPDIEKTGLSRA-QQDKLLEDRMKRFGVYGPLIPQILTYLKNI 139
77899988666667777888999***99883333233333344443.468889999999999999999999999987 PP
== domain 2 score: 76.4 bits; conditional E-value: 2.7e-25
TIGR02789 94 llrslpatlelaalalvivvlvsvplGllaavkrdrlvdkavrviaflgvsipnfwlafllvlllsv.yldllpaeGagtwkhlvlpavtlaltslai 190
+l+ +p ++ +++++++i ++++ +G+ aa+k+++l+d++ i+ l +ip+ + ++ +++sv l+ +g++ p +++ ++ l
MMSYN1_0165 196 FLKAMPYSFAIGSVSVLISYALAILIGVRAAKKKGKLFDNVFNGISALLLAIPSIVI-IIGTFIFSVaVLGNSGIYNTGSFATRFWPIFAIVVINLPG 292
5789*************************************************9865.4455566652356666667788888899999999999999 PP
TIGR02789 191 yarllraslldnlqeryvtyarvrGlkerkvirkhilrnailplitalGmsig.ellaGtlvienifslpGvGryavsaifnrdypviqcyvlllavl 287
a ++r ++d + y ++a ++G + +k+ hi+rna +i ++ +i +++ ++++e+ +++pG+Gr++ ++ d+ v +++l + +
MMSYN1_0165 293 IATFVRRYIVDEMTVDYAKFALAKGTSSNKTYYVHIFRNAGVRIIRSIPSEIIlTVFGSSMIVETQWAIPGMGRLIKESAGGNDFFVFLGFTVLSSFV 390
99999*******************************************998762677889************************************** PP
TIGR02789 288 fvlcnlivdllqalldprir 307
+++ l+ dl+++lldpr++
MMSYN1_0165 391 SIFAKLLADLVHVLLDPRVS 410
******************86 PP
>> TIGR02790 nickel_nikC: nickel ABC transporter, permease subunit NikC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.0 0.5 0.45 1e+03 54 76 .. 66 87 .. 60 91 .. 0.70
2 ! 19.2 4.8 7.9e-08 0.00018 50 183 .. 189 337 .. 157 373 .. 0.82
Alignments for each domain:
== domain 1 score: -3.0 bits; conditional E-value: 0.45
TIGR02790 54 fsrllfgarvslglallvlvlvl 76
f r+l+g ++l l++++l +v+
MMSYN1_0165 66 FKRILYGL-ITLLLSIIILYVVI 87
67888886.67777777777665 PP
== domain 2 score: 19.2 bits; conditional E-value: 7.9e-08
TIGR02790 50 GrcifsrllfgarvslglallvlvlvlvigvliGllaGyiGG.rvdevimrvvdvllslPtlvlal....alvGllGa.glenv.........iialv 132
G + +s +l ++ s+ ++ + ++++ ++++liG+ a + G d+v+ + +ll++P++v+++ + v +lG g+ n i+a+v
MMSYN1_0165 189 GSDALSIFLKAMPYSFAIGSVSVLISYALAILIGVRAAKKKGkLFDNVFNGISALLLAIPSIVIIIgtfiFSVAVLGNsGIYNTgsfatrfwpIFAIV 286
78889999999999*********************9887655167*****************99853322457888853676644445555669**** PP
TIGR02790 133 lvkWaayarlvrslvlslkkkefvlaakalgasevkiikrhilpnilseii 183
+++ + a +vr +++ ++ + a a g+s+ k hi +n +ii
MMSYN1_0165 287 VINLPGIATFVRRYIVDEMTVDYAKFALAKGTSSNKTYYVHIFRNAGVRII 337
*******************************************99877766 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (414 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 260 (0.0579323); expected 89.8 (0.02)
Passed bias filter: 105 (0.0233957); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 2972.61
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0165 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0166 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0166.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0166/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0166 [L=336]
Description: AmiD? 2=Generic Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.2e-25 85.6 15.4 1.2e-24 85.3 15.4 1.1 1 TIGR02790 nickel_nikC: nickel ABC transporter, permease subu
3.9e-05 21.2 8.5 3.9e-05 21.2 8.5 1.7 1 TIGR03416 ABC_choXWV_perm: choline ABC transporter, permease
Domain annotation for each model (and alignments):
>> TIGR02790 nickel_nikC: nickel ABC transporter, permease subunit NikC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 85.3 15.4 5.3e-28 1.2e-24 5 256 .. 72 329 .. 68 331 .. 0.88
Alignments for each domain:
== domain 1 score: 85.3 bits; conditional E-value: 5.3e-28
TIGR02790 5 lvivavlvllallasvlaphdPlkvnles...rllspsleyplGtdelGrcifsrllfgarvslglallvlvlvlvigvliGllaGyiGGrvdevimr 99
++i +++l ll+s+++p+ +++ l++ ps+++++G + G + + + g r sl +a+++ l l ig+ +Gl+ Gy+ ++d ++ +
MMSYN1_0166 72 FIICSIILLALLLTSIIVPYGKEAIPLKTpgvTQEHPSAQHWFGLGRNGEDYWIEIWLGLRSSLSFAFVMTFLQLSIGIIMGLIWGYYR-KLDILFYQ 168
4455555555567999999999999998622256789**************************************************95.89****** PP
TIGR02790 100 vvdvllslPtlvlalalvGllGaglenviialvlvkWaayarlvrslvlslkkkefvlaakalgasevkiikrhilpnilseiivlatleighvilai 197
++ ++l +P+l+l+++++ ++G g + +i+ +v+ W a +r lvls+++ ++ +a+ +lg+ + kii++ +lp+il+ +i ++t+ i +i
MMSYN1_0166 169 LTSLILVIPQLILIIVIMSVFGIGYWPMILGIVIQAWIGPAFSIRILVLSIRDADYNIASITLGTRSDKIIRKNVLPKILPVLIQVSTFSIPTAIAIE 266
************************************************************************************************** PP
TIGR02790 198 aalsflGlGiqpP..tpeWGimlseake..ylrtqPelmlyPGlaillsvmafnllGealrda 256
++l+++ G + G +l+ + + +P+l++ P l i + ++f l+ + + d
MMSYN1_0166 267 STLAYFDRGFVDGkvNTSLGKILQSIMQssEWQVYPHLIVLPILFICIISTLFFLVLKVFADS 329
******99976541145689999876541146789*******999999988888876666655 PP
>> TIGR03416 ABC_choXWV_perm: choline ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.2 8.5 1.8e-08 3.9e-05 84 210 .. 127 254 .. 119 266 .. 0.85
Alignments for each domain:
== domain 1 score: 21.2 bits; conditional E-value: 1.8e-08
TIGR03416 84 yWeetvetlalvlsatvvclviGvPlGiaaakrpklyaamrPvldlmqtlPtfvyliPalvlfGlGvvPGliatvifvlpap...irltklGissvpk 178
W +l+ + t++ l+iG+ +G++ +kl + l+ +P ++ +i + +fG+G P ++ vi + p ir+ l i + +
MMSYN1_0166 127 IWLGLRSSLSFAFVMTFLQLSIGIIMGLIWGYYRKLDILFYQLTSLILVIPQLILIIVIMSVFGIGYWPMILGIVIQAWIGPafsIRILVLSIRDADY 224
345556788889999999**********************************************************9864332339999999999888 PP
TIGR03416 179 elveaakafGatksqlllkvelPaalpqimaG 210
++ a+ ++G++ ++++k lP+ lp ++
MMSYN1_0166 225 NI--ASITLGTRSDKIIRKNVLPKILPVLIQV 254
87..77899****************9987755 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (336 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 319 (0.0710784); expected 89.8 (0.02)
Passed bias filter: 102 (0.0227273); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.09u 0.43s 00:00:00.52 Elapsed: 00:00:00.80
# Mc/sec: 603.14
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0166 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0167 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0167.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0167/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0167 [L=566]
Description: AmiE? 2=Generic Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-64 215.4 0.1 5.3e-54 181.0 0.0 2.4 2 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
2e-46 156.6 0.1 1.8e-37 127.2 0.0 2.2 2 TIGR02769 nickel_nikE: nickel import ATP-binding protein Nik
1.1e-40 137.5 0.6 1.8e-31 107.3 0.0 2.3 2 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
6e-40 135.0 5.0 1.9e-31 107.2 0.0 2.9 3 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
4.6e-38 128.8 0.0 3.3e-32 109.7 0.0 2.2 2 TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transport
6.2e-38 128.8 0.1 3.1e-30 103.5 0.0 2.3 2 TIGR01186 proV: glycine betaine/L-proline transport ATP bind
4.8e-37 125.8 2.5 9.5e-27 92.0 0.0 2.5 2 TIGR04520 ECF_ATPase_1: energy-coupling factor transporter A
2.5e-35 120.1 0.0 3.2e-26 90.2 0.0 2.2 2 TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein
3.8e-35 119.5 0.3 2.3e-28 97.2 0.0 2.5 2 TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-bindin
1.9e-33 114.1 0.0 4.7e-27 93.1 0.0 2.3 2 TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transp
1.2e-32 111.2 0.5 2.5e-22 77.5 0.0 2.4 2 TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-bi
1.7e-32 110.8 0.0 7.3e-26 89.1 0.0 2.3 2 TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding pr
7.3e-32 108.7 9.4 5.2e-23 79.7 0.1 3.1 3 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
6e-31 105.7 0.7 7.1e-26 89.0 0.0 2.5 2 TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-bindi
3.5e-30 103.2 0.1 5.2e-24 82.9 0.0 2.1 2 TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system
9.2e-30 101.9 8.0 9.7e-27 92.0 0.0 3.2 3 TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP
9.8e-29 98.5 3.0 2.9e-24 83.8 0.0 2.7 3 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
7.5e-27 92.0 0.2 7.9e-18 62.2 0.0 2.1 2 TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC trans
1.9e-26 90.5 0.1 8.8e-17 58.6 0.0 2.2 2 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
2.9e-26 90.4 0.2 4.5e-20 70.2 0.0 2.3 2 TIGR02673 FtsE: cell division ATP-binding protein FtsE
3.4e-26 90.3 0.1 1.4e-22 78.4 0.0 2.2 2 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
9.6e-26 88.7 0.0 6.8e-21 72.9 0.0 2.3 2 TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding protei
1.6e-25 87.6 6.4 1.1e-18 65.0 0.1 2.7 3 TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system
5.6e-25 85.8 0.3 4e-15 53.2 0.0 2.2 2 TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding p
9.2e-25 85.3 7.1 5.6e-17 59.9 0.0 2.8 2 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
1.1e-24 84.6 1.9 6.6e-16 55.7 0.0 2.4 3 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
2.7e-24 83.9 0.1 1.7e-18 65.0 0.0 2.2 2 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
5.4e-24 82.9 0.3 9.4e-18 62.5 0.0 2.3 2 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
6.3e-24 82.6 0.1 8.9e-23 78.8 0.0 2.1 2 TIGR01187 potA: polyamine ABC transporter, ATP-binding prote
1.9e-23 80.7 0.8 1.2e-14 51.8 0.0 2.2 2 TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
8e-23 78.5 0.0 5.8e-16 55.8 0.0 2.1 2 TIGR00958 3a01208: antigen peptide transporter 2
8.1e-23 78.9 0.0 5.7e-20 69.6 0.0 2.1 2 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
1.1e-22 78.1 0.0 6.1e-15 52.4 0.0 2.2 2 TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC trans
1.4e-22 78.2 0.2 7.7e-14 49.6 0.0 2.2 2 TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein
3.2e-22 77.1 0.0 2.4e-16 57.9 0.0 2.2 2 TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit,
5.9e-22 75.7 0.4 2.9e-15 53.7 0.1 2.2 2 TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protei
7.5e-22 75.7 0.1 2.4e-15 54.5 0.0 2.3 2 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
2.1e-21 74.4 0.1 1.6e-12 45.2 0.0 2.1 2 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
5.2e-21 72.9 0.0 1.1e-13 48.7 0.0 2.2 2 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
5.8e-21 73.2 0.0 1e-18 65.9 0.0 2.2 2 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
6.2e-21 73.1 0.4 2.2e-15 54.9 0.0 2.6 2 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
6.5e-21 72.5 0.0 8.9e-14 48.9 0.0 2.5 2 TIGR00955 3a01204: pigment precursor permease
6.8e-21 72.6 2.8 2.3e-17 61.1 0.0 2.8 2 TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-bi
7.1e-21 72.3 0.4 3.5e-14 50.2 0.0 2.3 2 TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
7.6e-21 72.8 3.2 2.1e-15 55.0 0.1 2.8 2 TIGR03740 galliderm_ABC: lantibiotic protection ABC transpor
1.2e-20 71.6 0.0 4e-11 40.2 0.0 2.1 2 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
2.5e-19 67.6 0.1 9.8e-11 39.5 0.0 2.7 2 TIGR01978 sufC: FeS assembly ATPase SufC
7.1e-19 65.8 0.1 3e-12 43.9 0.0 2.1 2 TIGR01192 chvA: glucan exporter ATP-binding protein
4.2e-18 63.8 1.0 2.1e-15 54.9 0.1 3.2 3 TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC tran
4.5e-16 56.7 0.0 8.1e-16 55.9 0.0 1.4 1 TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter,
7.5e-15 52.4 4.7 8.9e-11 39.0 0.0 2.7 2 TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD f
1.8e-14 51.4 0.0 1.6e-10 38.4 0.0 2.2 2 TIGR01288 nodI: nodulation ABC transporter NodI
5.9e-12 41.8 0.1 3.6e-06 22.6 0.0 2.2 2 TIGR00957 MRP_assoc_pro: multi drug resistance-associated pr
6.2e-12 43.6 0.0 2.1e-05 22.3 0.0 2.3 2 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
2.3e-10 36.7 8.4 3.6e-08 29.4 0.1 2.6 2 TIGR00956 3a01205: pleiotropic drug resistance family protei
2.6e-09 32.5 0.1 5.7e-09 31.3 0.0 1.5 2 TIGR01257 rim_protein: rim ABC transporter
1.2e-08 30.8 0.1 0.00011 17.8 0.1 2.2 2 TIGR01271 CFTR_protein: cystic fibrosis transmembrane conduc
1.3e-06 25.2 4.8 0.00092 15.7 0.0 2.6 2 TIGR00954 3a01203: peroxysomal long chain fatty acyl transpo
1.8e-06 24.7 0.1 0.012 12.1 0.0 2.1 2 TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
3.2e-06 23.5 12.1 1e-05 21.9 0.0 2.9 3 TIGR00630 uvra: excinuclease ABC subunit A
0.0091 13.6 1.7 0.035 11.7 0.0 2.5 2 TIGR00455 apsK: adenylyl-sulfate kinase
Domain annotation for each model (and alignments):
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.8 0.1 2.7e-10 2e-08 2 125 .. 25 154 .. 24 161 .. 0.62
2 ! 181.0 0.0 7.2e-56 5.3e-54 57 227 .. 305 476 .. 294 478 .. 0.97
Alignments for each domain:
== domain 1 score: 31.8 bits; conditional E-value: 2.7e-10
TIGR02770 2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal...alrgreiali..lqnPrsafnPlltikeqlletlkalek 94
++++++++ g+ +a+vGesGsGks+ ++++ ++l+++ ++G+i+ ++ + a+ ++++ l+ +n ++ + ik+ +k +
MMSYN1_0167 25 IRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESNGYIANGSIMYYPNKATREnesAVFKKDTDLVefHKNSLES-ESRKGIKKYNNKKIKDALL 121
5799******************************************97654433222334444444443113333332.2233444444444444444 PP
TIGR02770 95 lskqakelivea..leavgLeeaeevlkkypfe 125
+ k+ +e +e+ l+ +L++ + +lkky f
MMSYN1_0167 122 TIKELEESTIESlnLKIDELQQKADLLKKYEFT 154
444444444443113445666667777777665 PP
== domain 2 score: 181.0 bits; conditional E-value: 7.2e-56
TIGR02770 57 lalrgreialilqnPrsafnPlltikeqlletlkalekls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePt 153
+lrg +ia+i+q+P++++nPll+++ q+ e l+ ++kl+ ++ak +++ +++vg+++ae+ k p + sGGm qRv+ia+al++++ +li DePt
MMSYN1_0167 305 QHLRGGTIATIFQDPMTSLNPLLSVGYQISEVLRNHSKLNrAEAKVEAINLMKRVGIPNAEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPT 402
4799************************************99******************************************************** PP
TIGR02770 154 tdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqePkhettrkLls 227
t+lDv++qa++L+l++el+e+ ++++ithDlgvva++ad vavm +G+i+e gt +++f + kh +t Lls
MMSYN1_0167 403 TALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFNSKHPYTWALLS 476
*********************************************************************99987 PP
>> TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.3 0.1 7.6e-09 5.6e-07 20 125 .. 18 130 .. 5 165 .. 0.64
2 ! 127.2 0.0 2.5e-39 1.8e-37 89 252 .. 311 477 .. 296 485 .. 0.90
Alignments for each domain:
== domain 1 score: 27.3 bits; conditional E-value: 7.6e-09
TIGR02769 20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllG.lekP...akGevsfrGqdlakldrkqrkafrrdvqlv.fqdsisavnprksvr.... 108
+++ + + n+s+ + +Getva++G+sG+Gks l++ l le+ a+G++++ ++ ++ + + f++d lv f +rk ++
MMSYN1_0167 18 RSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNmLESNgyiANGSIMYYPNKATREN--ESAVFKKDTDLVeFHKNSLESESRKGIKkynn 113
33444556799************************99986244433336788888777666544..34467788777755444444455555541111 PP
TIGR02769 109 eiigePlrhltsldese 125
+ i++ l +++l+es
MMSYN1_0167 114 KKIKDALLTIKELEEST 130
34555555666666655 PP
== domain 2 score: 127.2 bits; conditional E-value: 2.5e-39
TIGR02769 89 dvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsev..ldklPrqlsGGqlqriniaralavePklivldeavsnldlv 184
++ +fqd ++++np sv+ i+e lr+ +l+++e k + +l++ v++++ + + lP + sGG qr+ ia ala +Pk+++ de + ld+
MMSYN1_0167 311 TIATIFQDPMTSLNPLLSVGYQISEVLRNHSKLNRAEAKVEAINLMKRVGIPNAEkrYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVT 408
6889***********************************************8654115679************************************* PP
TIGR02769 185 lqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvael.lsfkhpagrllqea 252
qa+il+l+k+lk+e +++fithdl +v ++a+rv+v+ Gqi+e ++ + + +khp + l ++
MMSYN1_0167 409 IQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVfFNSKHPYTWALLSS 477
***********************************************9877765257889988877765 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.5 0.2 2.9e-09 2.2e-07 15 73 .. 23 80 .. 5 134 .. 0.82
2 ! 107.3 0.0 2.5e-33 1.8e-31 78 242 .. 305 474 .. 296 478 .. 0.87
Alignments for each domain:
== domain 1 score: 28.5 bits; conditional E-value: 2.9e-09
TIGR00972 15 ealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydk 73
+++++++++i++ + +a++G sG+Gks l ++l + + + ++ ++G++++ ++ + +
MMSYN1_0167 23 TSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESN-GYIANGSIMYYPNKATRE 80
5799*********************************987.8999****9976665544 PP
== domain 2 score: 107.3 bits; conditional E-value: 2.5e-33
TIGR00972 78 velrk.kvGmvfqkpnpfp...msiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDeP 171
++lr ++ +fq p s+ ++ lr + +++e + + + +k++++ + + + k+ + + sGG +qr++ia ala +P+vl+ DeP
MMSYN1_0167 305 QHLRGgTIATIFQDPMTSLnplLSVGYQISEVLRNHSKLNRAEAKVEAINLMKRVGIPN-AEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEP 401
55553267888888743221347888899999999999999999999999*******96.5678999******************************* PP
TIGR00972 172 tsaLDpiatekieeliqeLkkk..ytivivthnmqqaarvsdktaffleGelveegeteqifekpkekktedy 242
t aLD + ++i +li+eLk++ +t++ +th++ a ++d++a+++ G+++e+g+t+++f ++k+ t
MMSYN1_0167 402 TTALDVTIQAQILDLIKELKEEykFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFNSKHPYTWAL 474
********************98557*****************************************9888665 PP
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.6 0.1 2.2e-09 1.6e-07 18 69 .. 22 72 .. 6 97 .. 0.74
2 ? -1.5 1.7 3.5 2.5e+02 174 277 .. 107 204 .. 100 206 .. 0.65
3 ! 107.2 0.0 2.6e-33 1.9e-31 75 238 .. 300 468 .. 288 488 .. 0.86
Alignments for each domain:
== domain 1 score: 28.6 bits; conditional E-value: 2.2e-09
TIGR04521 18 kkalkdvsleiekgefvaiiGhtGsGKstliqhlngLlkptsGeveidglei 69
++++++s++i +ge vai+G++GsGKs l + l +l+ ++G + ++
MMSYN1_0167 22 LTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLE-SNGYIANGSIMY 72
56899*****************************99997.456665554444 PP
== domain 2 score: -1.5 bits; conditional E-value: 3.5
TIGR04521 174 GLDpkgrkellellkklkkekgktvilvtHsmedvaeladrvivlkkGkvvldgtpeevfkeeeeleklklelPevlelvkklkkkglevkkkvltle 271
G+ + +k++ + l ++k+ ++ t+ +++++ + ad lk k ++++++++ k++e le++k +l e +e k+ kk ++e+++ t++
MMSYN1_0167 107 GIKKYNNKKIKDALLTIKELEESTIESLNLKIDELQQKADL---LK--KYEFTNSTKKLVKRNEYLEQIK-QLKEQIEWKKDPKKLDFEIQQLEKTIQ 198
55555666666666666666666666666666666666663...34..3455666777778888887776.466667777777777777777777777 PP
TIGR04521 272 elaeei 277
++++ei
MMSYN1_0167 199 TAKKEI 204
777776 PP
== domain 3 score: 107.2 bits; conditional E-value: 2.6e-33
TIGR04521 75 kkkklkelrk.kvglvFQfpekQLFe.etvlkdiafgpknl.glseeeveervkealelvgld..eellerspfeLSGGqkrrvAiagvLamepevLv 167
++k+l++lr +++ +FQ p + L +v +i +n +l+++e++ ++ ++++ vg++ e+ ++ p + SGG ++rv ia La++p+vL+
MMSYN1_0167 300 TDKNLQHLRGgTIATIFQDPMTSLNPlLSVGYQISEVLRNHsKLNRAEAKVEAINLMKRVGIPnaEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLI 397
45556777743677777777777764246777777776664278999***************9888899999************************** PP
TIGR04521 168 lDEptaGLDpkgrkellellkklkkekgktvilvtHsmedvaeladrvivlkkGkvvldgtpeevfkeeee 238
DEpt+ LD + + ++l+l+k+lk+e++ tvi++tH++ va++adrv v+ G+++ gt+++vf ++++
MMSYN1_0167 398 CDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFNSKH 468
******************************************************************77664 PP
>> TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.0 0.0 8.5e-06 0.00062 9 49 .. 18 58 .. 8 88 .. 0.77
2 ! 109.7 0.0 4.4e-34 3.3e-32 77 249 .. 299 477 .. 274 480 .. 0.90
Alignments for each domain:
== domain 1 score: 17.0 bits; conditional E-value: 8.5e-06
TIGR03005 9 rfgeltvldglelevaaGekvaliGpsGsGkstilrilmtl 49
r + lt + ++++++ Ge va++G sGsGks + + l +
MMSYN1_0167 18 RSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNM 58
556799999***********************999887653 PP
== domain 2 score: 109.7 bits; conditional E-value: 4.4e-34
TIGR03005 77 adekhlrkvre.kiGmvfqs..fnlfphktvldnvteapvlvkGvaraeaekravelldmvGlad..k.adalpaqlsGGqkqrvaiaralalrpkvl 168
+ +k l+++r+ i +fq l p +v ++ e + ++raea+ a++l++ vG+ + k + lp + sGG +qrv ia ala rpkvl
MMSYN1_0167 299 STDKNLQHLRGgTIATIFQDpmTSLNPLLSVGYQISEVLRNHSKLNRAEAKVEAINLMKRVGIPNaeKrYKDLPGKYSGGMRQRVVIAIALACRPKVL 396
56788888885379999996336899999999999999999999******************96511314789************************* PP
TIGR03005 169 lfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpkeertreflkk 249
+ de+t+ald + ++l+++++l +e ++t++++th++g ++adrv ++ G+i+e G +++f + k+ t ++l++
MMSYN1_0167 397 ICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFNSKHPYTWALLSS 477
***********************************************************************9999988876 PP
>> TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.8 0.0 1.3e-07 9.8e-06 8 45 .. 24 61 .. 19 88 .. 0.85
2 ! 103.5 0.0 4.2e-32 3.1e-30 59 225 .. 298 470 .. 294 479 .. 0.92
Alignments for each domain:
== domain 1 score: 22.8 bits; conditional E-value: 1.3e-07
TIGR01186 8 gvndvdleieeGeiiviiGlsGsGkstlvrllnrlieP 45
++++++++i++Ge + i+G sGsGks l + l ++e
MMSYN1_0167 24 SIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLES 61
689****************************9999985 PP
== domain 2 score: 103.5 bits; conditional E-value: 4.2e-32
TIGR01186 59 eisdaelrevrrkkiamviqk..ialfPhmtildnislgle.llkideqerkekalealklvdleeyedry...PdelsGGmqqrvGlaralaaePdl 150
d++l+ +r ia ++q+ +l P ++ is +l+ k+++ e k a +++k v++++ e+ry P + sGGm+qrv +a ala P++
MMSYN1_0167 298 RSTDKNLQHLRGGTIATIFQDpmTSLNPLLSVGYQISEVLRnHSKLNRAEAKVEAINLMKRVGIPNAEKRYkdlPGKYSGGMRQRVVIAIALACRPKV 395
5678899999**********754789******9999887752689***********************999666779********************* PP
TIGR01186 151 llmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaney 225
l+ de+ +ald i+ ++ d +++l+++++ t++fithdl ++dr++++ aG+i+ Gt ++++ n y
MMSYN1_0167 396 LICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFNSKHPY 470
********************************************************************9987776 PP
>> TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.3 0.1 1e-10 7.5e-09 6 55 .. 13 62 .. 6 94 .. 0.74
2 ! 92.0 0.0 1.3e-28 9.5e-27 67 228 .. 299 467 .. 294 480 .. 0.87
Alignments for each domain:
== domain 1 score: 33.3 bits; conditional E-value: 1e-10
TIGR04520 6 vsfkYeeeekkalkdvsleiekgefvaiiGhNGsGKsTlakllnglllpe 55
v+f+ +++ + ++++s++i +ge vai+G+ GsGKs l+k+l+ +l+++
MMSYN1_0167 13 VKFRVRSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESN 62
445555566679*********************************99865 PP
== domain 2 score: 92.0 bits; conditional E-value: 1.3e-28
TIGR04520 67 leeenlweirk.kvglvfqnPdnqlvg.atveedvaFglENl.gvpreeikkrveealkkvgleefrkk...epkkLSGGqkqrvaiagvlalepeii 158
++++nl+++r +++ +fq+P l v +++ l N+ +++r+e k + +k+vg+ + +k+ p k SGG +qrv ia +la +p+++
MMSYN1_0167 299 STDKNLQHLRGgTIATIFQDPMTSLNPlLSVGYQISEVLRNHsKLNRAEAKVEAINLMKRVGIPNAEKRykdLPGKYSGGMRQRVVIAIALACRPKVL 396
567788888853789999999998875246889999999986369999999999999*****9877654222699*********************** PP
TIGR04520 159 ilDEatsmLDpkgrkevletvkklkkeekltvisitHdleeave.adrvivlekgkivaegtpkeifskke 228
i DE+t+ LD + ++++l+++k+lk+e k+tvi itHdl +++ adrv v+ g+i++ gt +++f +++
MMSYN1_0167 397 ICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANiADRVAVMYAGQIIEYGTTQDVFFNSK 467
***************************************998755*********************98765 PP
>> TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.6 0.0 5.8e-09 4.3e-07 19 54 .. 25 62 .. 4 93 .. 0.76
2 ! 90.2 0.0 4.4e-28 3.2e-26 88 237 .. 315 477 .. 297 479 .. 0.88
Alignments for each domain:
== domain 1 score: 27.6 bits; conditional E-value: 5.8e-09
TIGR02323 19 cr.vsf.lypGevlgivGesGsGkstllkalaarllad 54
+r +sf +y Ge ++ivGesGsGks l k+l++ l ++
MMSYN1_0167 25 IRnISFdIYDGETVAIVGESGSGKSVLTKTLTNMLESN 62
3349***************************9987654 PP
== domain 2 score: 90.2 bits; conditional E-value: 4.4e-28
TIGR02323 88 vhqnpr.GlrmevsaGanigerllavgarhyGkiraaak.wlekveidaari....kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqar 177
+ q+p l +s G +i+e l + + + +a +++v i++a p ++sGGm+qr+ ia +l rp++++ ept l v++qa+
MMSYN1_0167 315 IFQDPMtSLNPLLSVGYQISEVLRNHSKLNRAEAKVEAInLMKRVGIPNAEKrykdLPGKYSGGMRQRVVIAIALACRPKVLICdEPTTALdVTIQAQ 412
5577766788889999999999999888777777777765899****9864444778***********************99888************* PP
TIGR02323 178 ll.llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGlt.rvl..pkhpytqllvss 237
+l l+++l e +++vi +th l+v+ +a+r+ vm G+++e G t v+ khpyt l+ss
MMSYN1_0167 413 ILdLIKELKEEYKFTVIFITHdLGVVANIADRVAVMYAGQIIEYGTTqDVFfnSKHPYTWALLSS 477
***********************************************5566889******99998 PP
>> TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.1 0.1 8.6e-07 6.4e-05 4 76 .. 8 84 .. 5 152 .. 0.81
2 ! 97.2 0.0 3.1e-30 2.3e-28 117 239 .. 348 473 .. 304 490 .. 0.87
Alignments for each domain:
== domain 1 score: 20.1 bits; conditional E-value: 8.6e-07
TIGR02314 4 lekiskvfdqgdkkikaldnvslfvpkgqifgvigasgagkstlirc.vnllekp...tsgavivdgkdlttlsnae 76
++++ f + +k ++++ n+s+ + +g+ + ++g sg+gks l + n+le ++g+++ ++ t+ +++
MMSYN1_0167 8 IKDLVVKFRVRSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTlTNMLESNgyiANGSIMYYPNKATRENESA 84
66777779999*********************************997359**9752325677776666666555555 PP
== domain 2 score: 97.2 bits; conditional E-value: 3.1e-30
TIGR02314 117 ikrkvtellalvglsdkkdsy...psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdev 211
k +l+ vg+ + ++ y p sgg +qrv ia ala pkvl+cde t+ald + il+l+ke+ + ++t+++ith++ vv +i d+v
MMSYN1_0167 348 AKVEAINLMKRVGIPNAEKRYkdlPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRV 445
3333457889999976555554449************************************************************************* PP
TIGR02314 212 avidkgeliekgtvseifshpktelakk 239
av+ g++ie gt ++f + k + +
MMSYN1_0167 446 AVMYAGQIIEYGTTQDVFFNSKHPYTWA 473
******************9998876655 PP
>> TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.6 0.0 2.8e-06 0.0002 15 54 .. 20 59 .. 2 84 .. 0.74
2 ! 93.1 0.0 6.4e-29 4.7e-27 86 231 .. 322 471 .. 310 492 .. 0.90
Alignments for each domain:
== domain 1 score: 18.6 bits; conditional E-value: 2.8e-06
TIGR03265 15 eaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLe 54
+ t +++is+++ +ge v+++G sG Gk+ L + ++ +
MMSYN1_0167 20 KVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNML 59
3678899*************************99887653 PP
== domain 2 score: 93.1 bits; conditional E-value: 6.4e-29
TIGR03265 86 aLfPnltvaeniayGLknk.klkreevaerveelLelvglsgseeky...PgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkk 179
+L P l v i+ L+n+ kl+r+e++ +l++ vg++++e++y Pg+ sGG +qrv +a ala +P++L+ DeP aLD +++++ +k+
MMSYN1_0167 322 SLNPLLSVGYQISEVLRNHsKLNRAEAKVEAINLMKRVGIPNAEKRYkdlPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKE 419
578889999999988987527899999999999************998899*********************************************** PP
TIGR03265 180 lqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeqPatkfv 231
l+++ + t i +thd +aDr++vm +g+i +gt ++++ + + ++
MMSYN1_0167 420 LKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFNSKHPYT 471
*******************************************988877765 PP
>> TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.7 0.1 3.2e-10 2.4e-08 1 54 [. 5 58 .. 5 85 .. 0.87
2 ! 77.5 0.0 3.3e-24 2.5e-22 111 220 .. 341 454 .. 301 455 .. 0.91
Alignments for each domain:
== domain 1 score: 31.7 bits; conditional E-value: 3.2e-10
TIGR02211 1 llkcenltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggl 54
+l+ ++l +++ ++ ++ ++++s++i++ge+vaivG+sGsGks l +l+ +
MMSYN1_0167 5 ILSIKDLVVKFRVRSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNM 58
678889999999999999****************************99998765 PP
== domain 2 score: 77.5 bits; conditional E-value: 3.3e-24
TIGR02211 111 skkskkeakerakellekvgl...ekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlela 205
sk +++eak +a +l+++vg+ ekr + p++ sGG rqrv ia al +Pk++++dePt+ ld + +i++l++el++e++ +++ +thdl ++
MMSYN1_0167 341 SKLNRAEAKVEAINLMKRVGIpnaEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVV 438
5678899************975447899999****************************************************************987 PP
TIGR02211 206 kkl.drvlelkdgkla 220
+++ drv ++ g++
MMSYN1_0167 439 ANIaDRVAVMYAGQII 454
6652788899999875 PP
>> TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.3 0.0 2.1e-06 0.00015 13 51 .. 22 60 .. 10 88 .. 0.78
2 ! 89.1 0.0 9.9e-28 7.3e-26 70 228 .. 308 472 .. 294 481 .. 0.83
Alignments for each domain:
== domain 1 score: 19.3 bits; conditional E-value: 2.1e-06
TIGR00968 13 fqalddvdlevktGslvallGpsGsGkstllrviaGlek 51
++++ ++++++ +G+ va++G sGsGks l ++++ + +
MMSYN1_0167 22 LTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLE 60
567899*************************99987543 PP
== domain 2 score: 89.1 bits; conditional E-value: 9.9e-28
TIGR00968 70 rdreiGfvfqh..yalfkhltvrdniafGleir.kkdkakikakveellelvqleklgdry...psqlsGGqrqrvalaralavepqvllldepfgal 161
r i +fq+ +l + l+v +i+ l+ + k ++a+ k +l++ v++ + ++ry p + sGG rqrv +a ala p+vl+ dep +al
MMSYN1_0167 308 RGGTIATIFQDpmTSLNPLLSVGYQISEVLRNHsKLNRAEAKVEAINLMKRVGIPNAEKRYkdlPGKYSGGMRQRVVIAIALACRPKVLICDEPTTAL 405
55556666665223455556666666665554347777888888889********99999977789******************************** PP
TIGR00968 162 dakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydepatafvl 228
d ++ ++ +++l++e k+t +f+thd ++adr++v+ G+i++ g++++v+ + ++
MMSYN1_0167 406 DVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFNSKHPYTW 472
*********************************************************9877766655 PP
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.4 0.1 9.4e-11 6.9e-09 2 72 .. 6 83 .. 5 105 .. 0.76
2 ? -1.3 1.9 3.7 2.7e+02 62 144 .. 189 272 .. 164 278 .. 0.66
3 ! 79.7 0.1 7e-25 5.2e-23 67 233 .. 297 462 .. 289 467 .. 0.89
Alignments for each domain:
== domain 1 score: 33.4 bits; conditional E-value: 9.4e-11
TIGR02315 2 levenlskvypngkqa...lknvnleikkGelvaviGlsGaGkstllrsinrlve....issgsillegkevtklkkk 72
l +++l +++ +++ ++n++++i Ge va++G+sG+Gks l +++ ++ e i +gsi+ + ++ t+++++
MMSYN1_0167 6 LSIKDLVVKFRVRSKVltsIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLEsngyIANGSIMYYPNKATRENES 83
6778888888766655111689****************************9998855556678888877776655544 PP
== domain 2 score: -1.3 bits; conditional E-value: 3.7
TIGR02315 62 egkevtklk.kkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakrad 144
e ++++k+ ++++ k+ i++++ + + ++ v + +l + l+ ++++ e ++++ +e+L+ l + +++++
MMSYN1_0167 189 EIQQLEKTIqTAKKEIYNFKTVNIYKKFRYFQIINLINKVNNNQLEDINKLEPHIKWLDEIEYKNNFESLALEILYDIRSNQTK 272
334443333122333334467788899999988999999999999999999999999999998888888876555555554444 PP
== domain 3 score: 79.7 bits; conditional E-value: 7e-25
TIGR02315 67 tklkkkelrklrk.kigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakrad...qLsGGqqqRvaiaRal 160
++ +k+l++lr i+ ifq+ +t l+ +Ls ++ l++ +l + e k +A++l++rvg+ + ++ d + sGG +qRv ia al
MMSYN1_0167 297 KRSTDKNLQHLRGgTIATIFQD-----PMTSLNPLLSVGYQISEVLRNHSKLNRAEAKVEAINLMKRVGIPNAEKRYKDlpgKYSGGMRQRVVIAIAL 389
5666788888885368899995.....79999999*9999******************************87544333333367************** PP
TIGR02315 161 aqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233
a +pk++++DEP+++LD + q++dl+k++ +e + tvi H++ ++ + adr+ + ag+i+ +g+++++
MMSYN1_0167 390 ACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDV 462
*****************************************************************99888765 PP
>> TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.3 0.1 4.9e-05 0.0036 39 71 .. 24 56 .. 16 76 .. 0.84
2 ! 89.0 0.0 9.7e-28 7.1e-26 94 262 .. 298 472 .. 291 483 .. 0.90
Alignments for each domain:
== domain 1 score: 14.3 bits; conditional E-value: 4.9e-05
TIGR03415 39 gvadasldveeGeilvlmGlsGsGkssllravn 71
+++++s+d+ +Ge + ++G sGsGks l +++
MMSYN1_0167 24 SIRNISFDIYDGETVAIVGESGSGKSVLTKTLT 56
6899************************99864 PP
== domain 2 score: 89.0 bits; conditional E-value: 9.7e-28
TIGR03415 94 kcdeatlrklrtkrvsmvfqk..fallPWrtveenvafGle.lsGvakaerrkrveeqlelvglaeWadkk...vgelsGGmqqrvGlarafateadi 185
+ ++l++lr +++ +fq +l P ++v ++ l s + +ae + ++ + ++ vg+ + ++++ +g sGGm+qrv +a a+a ++
MMSYN1_0167 298 RSTDKNLQHLRGGTIATIFQDpmTSLNPLLSVGYQISEVLRnHSKLNRAEAKVEAINLMKRVGIPNAEKRYkdlPGKYSGGMRQRVVIAIALACRPKV 395
567899**************7446899*******9999886156788999999999999999999888887444689********************* PP
TIGR03415 186 llmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPaneyva 262
l+ deP +ald i+a++ d + el+++ k t++f++hdl + +r+a+m G+i+ +gt++++ + ++ y
MMSYN1_0167 396 LICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFNSKHPYTW 472
*********************************************************************99999975 PP
>> TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.2 0.0 3.2e-06 0.00024 13 62 .. 14 63 .. 6 81 .. 0.84
2 ! 82.9 0.0 7.1e-26 5.2e-24 83 229 .. 313 464 .. 299 477 .. 0.87
Alignments for each domain:
== domain 1 score: 18.2 bits; conditional E-value: 3.2e-06
TIGR03258 13 slrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadG 62
++rv+ + + + ++s++i Ge +a++G+sGsGk+ l + ++ +++++G
MMSYN1_0167 14 KFRVRSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESNG 63
4677777788899***************************9999998887 PP
== domain 2 score: 82.9 bits; conditional E-value: 7.1e-26
TIGR03258 83 allvqn..yalfphlkveenvafGlrar.kqskaliaervadalklvqlsdaaarl...paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlr 174
a ++q+ +l p l v +++ lr + k ++a+ + + +k v++ +a +r+ p + sGG++qrv +a al+ rp+vl+ dep +ald ++
MMSYN1_0167 313 ATIFQDpmTSLNPLLSVGYQISEVLRNHsKLNRAEAKVEAINLMKRVGIPNAEKRYkdlPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQ 410
5566653246889999999999999975377889988899999********9998655599************************************* PP
TIGR03258 175 asvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralyd 229
a++ + +k l++e ++tv+++thd +ad++ +m G++i++G+t++++
MMSYN1_0167 411 AQILDLIKELKEEY-KFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFF 464
**********9997.79**********************************9874 PP
>> TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.6 0.1 0.00019 0.014 7 45 .. 23 61 .. 20 88 .. 0.91
2 ? -2.1 3.1 5.9 4.4e+02 235 258 .. 154 177 .. 97 244 .. 0.50
3 ! 92.0 0.0 1.3e-28 9.7e-27 95 210 .. 342 461 .. 318 472 .. 0.92
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 0.00019
TIGR01188 7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkP 45
+ +++++++++ ge ++++G G GK+ + k Lt +l+
MMSYN1_0167 23 TSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLES 61
5789******************************99975 PP
== domain 2 score: -2.1 bits; conditional E-value: 5.9
TIGR01188 235 sllaaelteslleleavevdsdkv 258
+ +++l +++++le++++ ++++
MMSYN1_0167 154 TNSTKKLVKRNEYLEQIKQLKEQI 177
111222222222222222222222 PP
== domain 3 score: 92.0 bits; conditional E-value: 1.3e-28
TIGR01188 95 glpkkeaeeraeellelvelkeaadkkv...ktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleead 188
l+++ea+ a +l+++v + +a +++ ++ysgGmr+r+ +a++l +P+vl DEPt+ LD++ +++i dli+elk+e + t++ th+l +
MMSYN1_0167 342 KLNRAEAKVEAINLMKRVGIPNAEKRYKdlpGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEyKFTVIFITHDLGVVA 439
578889999999********9999886423379*************************************************9*************** PP
TIGR01188 189 kladrvaiidkGkiiaedtpee 210
++adrva++ G+ii +t+++
MMSYN1_0167 440 NIADRVAVMYAGQIIEYGTTQD 461
*******************997 PP
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 0.0 6.6e-05 0.0048 16 54 .. 17 59 .. 5 99 .. 0.70
2 ? -2.1 0.3 7.5 5.5e+02 77 133 .. 196 253 .. 184 262 .. 0.58
3 ! 83.8 0.0 3.9e-26 2.9e-24 69 219 .. 296 453 .. 275 454 .. 0.89
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 6.6e-05
TIGR02982 16 lrkqvl...fdinleiepgeiviltGpsGsGkttll.tliggl 54
+r +vl +i+++i +ge v + G+sGsGk l tl l
MMSYN1_0167 17 VRSKVLtsiRNISFDIYDGETVAIVGESGSGKSVLTkTLTNML 59
4555551115789*******************97752343333 PP
== domain 2 score: -2.1 bits; conditional E-value: 7.5
TIGR02982 77 lvqvrrkiGyifqahnllesltaeqnvrmalelkek.lsakeakakaeelleavglee 133
+q +k y f++ n+++ + q +++ +++++ l+ ++ + ++l ++ ++
MMSYN1_0167 196 TIQTAKKEIYNFKTVNIYKKFRYFQIINLINKVNNNqLEDINKLEPHIKWLDEIEYKN 253
3344444447777777777777777777777766552444444455556666655555 PP
== domain 3 score: 83.8 bits; conditional E-value: 3.9e-26
TIGR02982 69 lkgasekelvqvrr.kiGyifqa..hnllesltaeqnvrmalelkeklsakeakakaeelleavglee...rldykpedlsgGqkqrvaiaralvarP 160
+k+ ++k+l+++r +i ifq l l + + l ++kl+++eak +a +l++ vg+ + r + p + sgG +qrv ia al+ rP
MMSYN1_0167 296 IKRSTDKNLQHLRGgTIATIFQDpmTSLNPLLSVGYQISEVLRNHSKLNRAEAKVEAINLMKRVGIPNaekRYKDLPGKYSGGMRQRVVIAIALACRP 393
6778889999999637999**96336788899999999999999999******************96555599999********************** PP
TIGR02982 161 klvladePtaaldkksgrevvellqklareqgttillvthdnri.ldvadrivkmedGkl 219
k+++ dePt+ald + ++++l+++l +e t++++thd + ++adr+ m G++
MMSYN1_0167 394 KVLICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVvANIADRVAVMYAGQI 453
*****************************************875169*********9997 PP
>> TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.8 0.1 2.8e-09 2.1e-07 457 499 .. 13 55 .. 6 87 .. 0.86
2 ! 62.2 0.0 1.1e-19 7.9e-18 588 671 .. 374 462 .. 370 467 .. 0.90
Alignments for each domain:
== domain 1 score: 27.8 bits; conditional E-value: 2.8e-09
TIGR03797 457 vtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlL 499
v+Fr ++ + ++++s+ i +Ge vaivG+SGsGKS l + L
MMSYN1_0167 13 VKFRVRSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTL 55
889999999999*************************998877 PP
== domain 2 score: 62.2 bits; conditional E-value: 1.1e-19
TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl....kvtRiviAHRLSTirn.adrilvleeGrvveqGsyeeL 671
+ SGG rQR++iA al+ +P++l+ DE T ALD + Qa + + +++l k t i i H L ++n adr+ v+ +G+++e G+ +++
MMSYN1_0167 374 KYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELkeeyKFTVIFITHDLGVVANiADRVAVMYAGQIIEYGTTQDV 462
56*************************************99998887333358************9989***************98875 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.8 0.1 6.2e-10 4.5e-08 471 520 .. 13 62 .. 6 122 .. 0.85
2 ! 58.6 0.0 1.2e-18 8.8e-17 604 691 .. 375 465 .. 367 469 .. 0.92
Alignments for each domain:
== domain 1 score: 29.8 bits; conditional E-value: 6.2e-10
TIGR03375 471 vsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyept 520
v+f+ + + ++++n+s++i Ge vai+G+ GsGKs l+k l++++e +
MMSYN1_0167 13 VKFRVRSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESN 62
677778888899********************************999864 PP
== domain 2 score: 58.6 bits; conditional E-value: 1.2e-18
TIGR03375 604 LSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslL.elvdriivldkGrivadGpkdevlea 691
SgG rq v++a al p++l+ DEPt+alD + +++l+ +kel + + T++ +tH ++ +++dr+ v+ G+i+ G+ + v+ +
MMSYN1_0167 375 YSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEeyKFTVIFITHDLGVVaNIADRVAVMYAGQIIEYGTTQDVFFN 465
6********************************************9997778********9876379******************999755 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.1 0.0 5.4e-06 0.0004 15 54 .. 22 61 .. 5 91 .. 0.76
2 ! 70.2 0.0 6.1e-22 4.5e-20 65 213 .. 295 451 .. 287 452 .. 0.82
Alignments for each domain:
== domain 1 score: 18.1 bits; conditional E-value: 5.4e-06
TIGR02673 15 veaLkdvslkiekgeflfltGasGaGkttllklllgaekp 54
+ ++++s+ i ge + ++G+sG+Gk+ l k l+++++
MMSYN1_0167 22 LTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLES 61
4567899***********************9999888754 PP
== domain 2 score: 70.2 bits; conditional E-value: 6.1e-22
TIGR02673 65 dvarlrerelpllRr.kigvvfqD..fkllkdrtvlenvalalevrgk.keeeiqkrveevlelvgl...edkakalpeelsgGeqqRvaiaRaivnk 155
++r ++++l +lR i+++fqD l + +v + +l+ + k +++e + + ++++ vg+ e++ k lp + sgG +qRv ia a+ +
MMSYN1_0167 295 WIKRSTDKNLQHLRGgTIATIFQDpmTSLNPLLSVGYQISEVLRNHSKlNRAEAKVEAINLMKRVGIpnaEKRYKDLPGKYSGGMRQRVVIAIALACR 392
57889999******6379******4445777789999999999866541333444445567999*994435688999********************* PP
TIGR02673 156 PelllaDePtGnlDdelserildllkelnk.rGttvivathdeelvervkkrvlelekg 213
P++l+ DePt lD + +++ildl+kel++ + tvi+ thd +v++++ rv + +g
MMSYN1_0167 393 PKVLICDEPTTALDVTIQAQILDLIKELKEeYKFTVIFITHDLGVVANIADRVAVMYAG 451
***************************9862579****************999888766 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.5 0.0 0.0016 0.12 13 47 .. 25 59 .. 13 73 .. 0.79
2 ! 78.4 0.0 1.9e-24 1.4e-22 103 224 .. 346 467 .. 305 477 .. 0.78
Alignments for each domain:
== domain 1 score: 9.5 bits; conditional E-value: 0.0016
TIGR02142 13 eLdvdlelpgkgvtalFGrsGsGktslirliaGLt 47
++++++ + +a+ G+sGsGk+ l + ++ ++
MMSYN1_0167 25 IRNISFDIYDGETVAIVGESGSGKSVLTKTLTNML 59
557888888889**************999877655 PP
== domain 2 score: 78.4 bits; conditional E-value: 1.9e-24
TIGR02142 103 araeerriseekvielLgi...ehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevar 197
a+a +++ ++++ +gi e+ + lpgk sGG +qRv i+ Al +P++L+ DeP +aLD + +++il +++l++e k ++++ H+l va
MMSYN1_0167 346 AEA---KVEAINLMKRVGIpnaEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVAN 440
222...344444455555511145555579******************************************************************** PP
TIGR02142 198 ladrvvvledGrvkaagkleevlaskd 224
+adrv v+ +G++ g+ ++v +++
MMSYN1_0167 441 IADRVAVMYAGQIIEYGTTQDVFFNSK 467
*********************987765 PP
>> TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.5 0.0 0.00013 0.0095 2 33 .. 26 57 .. 25 90 .. 0.76
2 ! 72.9 0.0 9.2e-23 6.8e-21 79 205 .. 333 465 .. 308 472 .. 0.79
Alignments for each domain:
== domain 1 score: 13.5 bits; conditional E-value: 0.00013
TIGR01184 2 kdvdleikkgefislighsgcgkstllnliag 33
++++++i +ge ++++g sg gks l ++
MMSYN1_0167 26 RNISFDIYDGETVAIVGESGSGKSVLTKTLTN 57
799********************976544433 PP
== domain 2 score: 72.9 bits; conditional E-value: 9.2e-23
TIGR01184 79 vdavlrdlskserreiveehiel...vglreaadkr...peqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlm 170
+ +vlr+ sk +r e e i+l vg+ +a++++ p++ sggm+qrv ia al+ rpk+l+ dep ald + ++ + + ++ ee + tv++
MMSYN1_0167 333 ISEVLRNHSKLNRAEAKVEAINLmkrVGIPNAEKRYkdlPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKFTVIF 430
3455555555555444444444322278888776543337899******************************************************* PP
TIGR01184 171 vthdvdealllsdrvvmltngpaakigeilevple 205
+thd+ ++drv ++ +g + g +v ++
MMSYN1_0167 431 ITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFN 465
*********************99999988887765 PP
>> TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.3 0.1 1.6e-08 1.2e-06 2 61 .. 7 72 .. 6 103 .. 0.79
2 ? -1.6 0.4 2.4 1.7e+02 232 275 .. 138 181 .. 129 212 .. 0.81
3 ! 65.0 0.1 1.5e-20 1.1e-18 399 516 .. 348 463 .. 333 467 .. 0.94
Alignments for each domain:
== domain 1 score: 25.3 bits; conditional E-value: 1.6e-08
TIGR03269 2 evenltkkfdg....levlknisleleeGevlGilGksGaGksvllhllrGldeyep..tsGkiiy 61
+++l++kf l+ ++nis+++ +Ge + i+G+sG+Gksvl + l + e + +G i+y
MMSYN1_0167 7 SIKDLVVKFRVrskvLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESNGyiANGSIMY 72
578888888641111455799**************************9998865443225677776 PP
== domain 2 score: -1.6 bits; conditional E-value: 2.4
TIGR03269 232 iedlsdkaillekGeiveeGepeevvakflesvsevekekevev 275
i++l +ka ll+k e + + +++le++++++++ e +
MMSYN1_0167 138 IDELQQKADLLKKYEFTNSTKKLVKRNEYLEQIKQLKEQIEWKK 181
7899999999999999999999999999*****99998665544 PP
== domain 3 score: 65.0 bits; conditional E-value: 1.5e-20
TIGR03269 399 akrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcd 496
ak a+ +k vG + a++ + lp + s G r rv +a l p+++i dept ++d + ++ + i + +ee + t + ++hd+ v ++ d
MMSYN1_0167 348 AKVEAINLMKRVGIPN--AEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANIAD 443
788999*******975..6777899************************************************************************* PP
TIGR03269 497 raalmrdGkivkiGdpeeiv 516
r+a+m G+i++ G ++++
MMSYN1_0167 444 RVAVMYAGQIIEYGTTQDVF 463
****************9985 PP
>> TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.4 0.2 4.6e-10 3.4e-08 337 385 .. 13 61 .. 4 72 .. 0.85
2 ! 53.2 0.0 5.4e-17 4e-15 469 556 .. 373 463 .. 337 475 .. 0.91
Alignments for each domain:
== domain 1 score: 30.4 bits; conditional E-value: 4.6e-10
TIGR02203 337 vtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyep 385
v+fr +++ +++is+++ Ge+va+vG sGsGks l + l+ +e
MMSYN1_0167 13 VKFRVRSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLES 61
677788888999***************************9999988765 PP
== domain 2 score: 53.2 bits; conditional E-value: 5.4e-17
TIGR02203 469 skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgR..ttlviahRLstiek.aDrivvlddGkiverGtheeLl 556
+k sGG RqR+ ia al +Li De t+aLD ++ + +++l ++ t + i h L + + aDr+ v+ +G+i+e Gt ++++
MMSYN1_0167 373 GKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYkfTVIFITHDLGVVANiADRVAVMYAGQIIEYGTTQDVF 463
578*********************************************9985348899******998769****************99975 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.4 1.2 3.3e-09 2.5e-07 12 76 .. 23 89 .. 8 148 .. 0.76
2 ! 59.9 0.0 7.6e-19 5.6e-17 74 203 .. 308 445 .. 292 448 .. 0.76
Alignments for each domain:
== domain 1 score: 28.4 bits; conditional E-value: 3.3e-09
TIGR03608 12 eilkklslkiekGelvaivGesGsGKs....tlLnilgllekkdsgkvilegkekaklkskkaskllre 76
+ ++++s++i +Ge+vaivGesGsGKs tl n+l +g++++ ++++ +++++ ++++
MMSYN1_0167 23 TSIRNISFDIYDGETVAIVGESGSGKSvltkTLTNMLESNGYIANGSIMYYPNKAT--RENESAVFKKD 89
457899********************966667889999999999999999888744..44555555554 PP
== domain 2 score: 59.9 bits; conditional E-value: 7.6e-19
TIGR03608 74 lreklgylFqn..faLlenetveenlelalk.lkkkskkekekkkkevlekvgl...ekklkkkiyelsgGekqRvalarillkeselilADEPtgsL 165
+ +++ +Fq+ +L +v + ++ l ++k+++ e + + ++++++vg+ ek+ k + sgG +qRv +a +l +++++ DEPt++L
MMSYN1_0167 308 RGGTIATIFQDpmTSLNPLLSVGYQISEVLRnHSKLNRAEAKVEAINLMKRVGIpnaEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTAL 405
555666666663223444456666665555415677888888899999******53233344457799****************************** PP
TIGR03608 166 Dkknreevlellkelkeegk.tiiivtHdp.evaekadrv 203
D ++++l+l+kelkee k t+i++tHd va+ adrv
MMSYN1_0167 406 DVTIQAQILDLIKELKEEYKfTVIFITHDLgVVANIADRV 445
*****************9886899*****83457778887 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.9 0.2 2.2e-09 1.6e-07 461 505 .. 13 57 .. 5 65 .. 0.91
2 ? -3.6 0.1 7.8 5.7e+02 84 105 .. 261 282 .. 187 284 .. 0.61
3 ! 55.7 0.0 9e-18 6.6e-16 592 679 .. 373 463 .. 363 475 .. 0.88
Alignments for each domain:
== domain 1 score: 27.9 bits; conditional E-value: 2.2e-09
TIGR01846 461 irfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqr 505
++fr + + ++n+s+di +Ge++ ivG+sGsGks ltk l
MMSYN1_0167 13 VKFRVRSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTN 57
89***************************************8865 PP
== domain 2 score: -3.6 bits; conditional E-value: 7.8
TIGR01846 84 vliydaeedkpekldkevleal 105
++yd +++++kld+e+le+l
MMSYN1_0167 261 EILYDIRSNQTKKLDQEKLETL 282
4678888888888888888765 PP
== domain 3 score: 55.7 bits; conditional E-value: 9e-18
TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickg..rtviiiahrlstvra.adrilvlekGkivesGkheell 679
++ sGG rqr+ +a al P++li de t+ald +a i + ++e+ ++ tvi i+h l v + adr+ v+ G+i+e G+ ++++
MMSYN1_0167 373 GKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEykFTVIFITHDLGVVANiADRVAVMYAGQIIEYGTTQDVF 463
678*******************************************99876226***********98758***************987654 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.7 0.0 1.3e-05 0.00097 17 48 .. 28 59 .. 14 84 .. 0.78
2 ! 65.0 0.0 2.3e-20 1.7e-18 75 209 .. 315 455 .. 304 459 .. 0.87
Alignments for each domain:
== domain 1 score: 16.7 bits; conditional E-value: 1.3e-05
TIGR01277 17 fdlsveaGervailGesGaGkstllnliaGfl 48
++ + +Ge vai+GesG+Gks l + ++ +l
MMSYN1_0167 28 ISFDIYDGETVAIVGESGSGKSVLTKTLTNML 59
567789****************8876665544 PP
== domain 2 score: 65.0 bits; conditional E-value: 2.3e-20
TIGR01277 75 lfqe..nnlfahltvrqniglGlkpglkln.avqkekvedvarqvGiadyler...lpeelsGGqrqrvalarclvrekpillldepfsaldpklree 166
+fq+ l + l+v i+ l+ kln a+ k + ++ ++vGi + +r lp++ sGG rqrv +a l +l+ dep +ald +++ +
MMSYN1_0167 315 IFQDpmTSLNPLLSVGYQISEVLRNHSKLNrAEAKVEAINLMKRVGIPNAEKRykdLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQ 412
5665324677888999999999999999993455566667789****9987665559******************99999****************** PP
TIGR01277 167 mlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
+l l+k+l +e k t++++th+l +a+ia++v+v+ G+i
MMSYN1_0167 413 ILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIE 455
****************************************975 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.3 0.0 3.9e-06 0.00029 12 53 .. 18 62 .. 6 89 .. 0.74
2 ! 62.5 0.0 1.3e-19 9.4e-18 125 219 .. 368 462 .. 325 468 .. 0.90
Alignments for each domain:
== domain 1 score: 18.3 bits; conditional E-value: 3.9e-06
TIGR03410 12 esevl...rdvslevekgevvavlGrngvGkttllkalvgllkvk 53
+s+vl r++s+++ +ge+va++G g Gk+ l k+l+ +l+ +
MMSYN1_0167 18 RSKVLtsiRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESN 62
56665222789***************************9998753 PP
== domain 2 score: 62.5 bits; conditional E-value: 1.3e-19
TIGR03410 125 lkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219
k G+ sGG +q + ia aL+++Pk+l+ DePt + i ++i + ikel++e +++++ + + l + ++adr++v+ G++++ g+++++
MMSYN1_0167 368 YKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDV 462
4556799*********************************************************************************9998875 PP
>> TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.3 0.0 0.46 34 1 21 [. 40 60 .. 40 80 .. 0.78
2 ! 78.8 0.0 1.2e-24 8.9e-23 43 196 .. 311 470 .. 301 481 .. 0.89
Alignments for each domain:
== domain 1 score: 1.3 bits; conditional E-value: 0.46
TIGR01187 1 lLGpsGsGkttlLrllaGlee 21
++G sGsGk+ l ++l + e
MMSYN1_0167 40 IVGESGSGKSVLTKTLTNMLE 60
689*******99999987654 PP
== domain 2 score: 78.8 bits; conditional E-value: 1.2e-24
TIGR01187 43 svnvvfqs..yaLfPhmtveenvafgLkm.rkvpkaeikervkeaLelvqleefakrk...psqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkk 134
++ ++fq+ +L P ++v ++ L+ k+++ae k ++++ v + + kr+ p + sGG rqrv +a a++ +Pk+L+ Dep +aLD
MMSYN1_0167 311 TIATIFQDpmTSLNPLLSVGYQISEVLRNhSKLNRAEAKVEAINLMKRVGIPNAEKRYkdlPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVT 408
588999974358999*********9999626899****99999999999998877776444789********************************** PP
TIGR01187 135 LrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePanef 196
++ q+ +k+l+e+ tv+++thD ++dr+av+ G+i+ g++++++ + + +
MMSYN1_0167 409 IQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFNSKHPY 470
*****************************************************998777666 PP
>> TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.3 0.2 4e-09 2.9e-07 332 368 .. 23 59 .. 4 70 .. 0.83
2 ! 51.8 0.0 1.6e-16 1.2e-14 455 541 .. 375 463 .. 369 465 .. 0.93
Alignments for each domain:
== domain 1 score: 27.3 bits; conditional E-value: 4e-09
TIGR01842 332 ktlkgisfalkaGealaiiGpsgsGkssLarllvGvw 368
+ +++isf + Ge++ai+G sgsGks L+++l+ +
MMSYN1_0167 23 TSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNML 59
6799****************************98765 PP
== domain 2 score: 51.8 bits; conditional E-value: 1.6e-16
TIGR01842 455 LsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkar.kitvvvithrpsll.elvdkilvlkdGalkafGereevl 541
sgG rqR+ +a al Pk+++ DeP + LD + ++ +++ +kelk++ k tv++ith ++ +++d+++v+ +G++ ++G+ ++v
MMSYN1_0167 375 YSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEyKFTVIFITHDLGVVaNIADRVAVMYAGQIIEYGTTQDVF 463
69*********************************************86489********99872578*****************9985 PP
>> TIGR00958 3a01208: antigen peptide transporter 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.4 0.0 4.1e-07 3e-05 497 532 .. 25 60 .. 9 69 .. 0.87
2 ! 55.8 0.0 7.9e-18 5.8e-16 618 701 .. 375 463 .. 370 473 .. 0.90
Alignments for each domain:
== domain 1 score: 20.4 bits; conditional E-value: 4.1e-07
TIGR00958 497 lkdLtftlepGevvalVGPsGsGKStvaallenlYq 532
+++++f + Ge+va+VG sGsGKS l n+ +
MMSYN1_0167 25 IRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLE 60
5899**********************9999998765 PP
== domain 2 score: 55.8 bits; conditional E-value: 7.9e-18
TIGR00958 618 lsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLstvek.adkilvlkkgsvvelGthkqLm 701
sgG +qr+ iA AL +P vLi De t ALD+ ++ l++e k++++ tv+ i+h L +v + ad+++v+ g++ e Gt +++
MMSYN1_0167 375 YSGGMRQRVVIAIALACRPKVLICDEPTTALDVtiqaQILDLIKELKEEYKFTVIFITHDLGVVANiADRVAVMYAGQIIEYGTTQDVF 463
69*******************************776667778899*****************9987699**************998765 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.1 0.0 0.009 0.67 17 53 .. 25 61 .. 11 85 .. 0.83
2 ! 69.6 0.0 7.8e-22 5.7e-20 138 226 .. 375 464 .. 346 476 .. 0.92
Alignments for each domain:
== domain 1 score: 7.1 bits; conditional E-value: 0.009
TIGR03873 17 vddvdvtaPaGaltgllGPnGsGkstllrllaGllap 53
+ ++ + G+ +++G GsGks l + l+ +l++
MMSYN1_0167 25 IRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLES 61
5677788889******************999988875 PP
== domain 2 score: 69.6 bits; conditional E-value: 7.8e-22
TIGR03873 138 lsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaae.gvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevlt 226
sGG rqrv +a ala +Pk+l+ dePt ldv+ q ++l l++el +e + tv+ hdl a+++d+v v+ +G+++ G++++v+
MMSYN1_0167 375 YSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEyKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFF 464
69********************************************8653789999*****************************99975 PP
>> TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.5 0.0 4.6e-08 3.4e-06 493 531 .. 23 61 .. 5 110 .. 0.80
2 ! 52.4 0.0 8.3e-17 6.1e-15 615 699 .. 374 463 .. 359 474 .. 0.87
Alignments for each domain:
== domain 1 score: 23.5 bits; conditional E-value: 4.6e-08
TIGR03796 493 pliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyep 531
i+++s+++ G+ vA+vG sGsGks ++k ++ + e+
MMSYN1_0167 23 TSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLES 61
4589***************************99998875 PP
== domain 2 score: 52.4 bits; conditional E-value: 8.3e-17
TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr....RgctciivaHRLstiRd.cdeiivlerGkvverGtHeell 699
+sGG rqR+ iA aL+ +P +Li DE t+aLD + +i + +++ t+i ++H L + + +d++ v+ G+++e Gt +++
MMSYN1_0167 374 KYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKElkeeYKFTVIFITHDLGVVANiADRVAVMYAGQIIEYGTTQDVF 463
69*************************************99888752222579***********99857****************98865 PP
>> TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.4 0.0 1.3e-08 9.7e-07 4 63 .. 8 63 .. 5 81 .. 0.76
2 ! 49.6 0.0 1e-15 7.7e-14 120 218 .. 343 444 .. 327 449 .. 0.88
Alignments for each domain:
== domain 1 score: 26.4 bits; conditional E-value: 1.3e-08
TIGR02324 4 vedlsktfilhqqgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesg 63
++dl +f + + l +++++s+++ +Ge va+ G+sG+Gks l k+l n l ++g
MMSYN1_0167 8 IKDLVVKFRVRS---KVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLT-NMLESNG 63
555555555544...4799**************************9999984.4444444 PP
== domain 2 score: 49.6 bits; conditional E-value: 1e-15
TIGR02324 120 vereearakakellarlnip..erLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakar.gaaligifhdeevrel 214
++r+ea+++a +l++r+ ip e+ ++ P +sGG +qRv ia al +L+ dePt++Ld + ++ +++like+k++ ++i i hd v +
MMSYN1_0167 343 LNRAEAKVEAINLMKRVGIPnaEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEyKFTVIFITHDLGVVAN 440
6899***************85578888899*******************5557888**********************9874689*******999988 PP
TIGR02324 215 vadr 218
+adr
MMSYN1_0167 441 IADR 444
8887 PP
>> TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.1 0.0 9.1e-06 0.00067 15 58 .. 23 70 .. 5 127 .. 0.77
2 ! 57.9 0.0 3.2e-18 2.4e-16 97 220 .. 339 463 .. 300 471 .. 0.81
Alignments for each domain:
== domain 1 score: 17.1 bits; conditional E-value: 9.1e-06
TIGR03864 15 ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeak....egei 58
+ ++++s+++ ge va++G G+Gks L + lt ++e++ +g+i
MMSYN1_0167 23 TSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESNgyiaNGSI 70
457899*****************************9987644444444 PP
== domain 2 score: 57.9 bits; conditional E-value: 3.2e-18
TIGR03864 97 yhaaLhGlsraeaeerieealarlgl...aeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWath 191
h+ l raea+ + ++++r+g+ ++r ++ + +GG r+rv ia al +Pk+L+ De+t LD++ +a++++ ++el +e + +v++ th
MMSYN1_0167 339 NHS---KLNRAEAKVEAINLMKRVGIpnaEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITH 433
333...3679999999999999999833233445556789********************************************************** PP
TIGR03864 192 lvdevea.edrlvvlhkGkvlaqGaaaela 220
+ v++ +dr+ v+ G++ G+++++
MMSYN1_0167 434 DLGVVANiADRVAVMYAGQIIEYGTTQDVF 463
999886538*****************9986 PP
>> TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.2 0.0 5.5e-07 4e-05 13 62 .. 21 72 .. 5 89 .. 0.77
2 ! 53.7 0.1 3.9e-17 2.9e-15 352 481 .. 325 453 .. 303 464 .. 0.80
Alignments for each domain:
== domain 1 score: 20.2 bits; conditional E-value: 5.5e-07
TIGR02633 13 gvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGty..dGeilf 62
++++ ni++ + Ge v++ Ge G+Gks l k l+ + y +G i++
MMSYN1_0167 21 VLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESNGYiaNGSIMY 72
357899*****************************99887766644566666 PP
== domain 2 score: 53.7 bits; conditional E-value: 3.9e-17
TIGR02633 352 pvlgvGknitlavlkkfakksrideaaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinql 449
p l+vG +i+ vl++++k +r +++ e + + + + dlp ++ sGG +q+ v+a l +p+vli dept +dv +++i li++l
MMSYN1_0167 325 PLLSVGYQIS-EVLRNHSKLNRAEAKVEAINLMKRVGIPNAEKRYKDLP-GKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKEL 420
6677787776.57888888888777777766666666666666677787.789999999999999999999999999999999999999999999999 PP
TIGR02633 450 aqe.GvaiivvsselaevlGlsdrvlvigeGkl 481
+e ++i ++ +l v ++drv v+ G++
MMSYN1_0167 421 KEEyKFTVIFITHDLGVVANIADRVAVMYAGQI 453
877357899999999999999999999998876 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.9 0.0 2.6e-06 0.00019 8 62 .. 25 77 .. 16 93 .. 0.78
2 ! 54.5 0.0 3.2e-17 2.4e-15 61 188 .. 302 436 .. 297 438 .. 0.83
Alignments for each domain:
== domain 1 score: 18.9 bits; conditional E-value: 2.6e-06
TIGR01166 8 lkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkg 62
++++++++ ge++a++G+ G+Gks l ++l+ +l + G + +G+ + y k
MMSYN1_0167 25 IRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESN-GY-IANGSIMYYPNKA 77
67899***************************999754.43.4566666666665 PP
== domain 2 score: 54.5 bits; conditional E-value: 3.2e-17
TIGR01166 61 kgllelrk.kvalvlqdpddqlf.aadvdedvafgplnlG.lseaeverrvrealaavdisgleerpth...llsgGekkrvaiagavalrpdvllld 152
k+l +lr ++a+++qdp l +v ++ ++n l+ ae++ + ++ v+i + e+r + ++sgG ++rv ia a+a rp+vl+ d
MMSYN1_0167 302 KNLQHLRGgTIATIFQDPMTSLNpLLSVGYQISEVLRNHSkLNRAEAKVEAINLMKRVGIPNAEKRYKDlpgKYSGGMRQRVVIAIALACRPKVLICD 399
56666664278999999999886246899999999999753667777777778999****99999865422279************************ PP
TIGR01166 153 ePtagldpaGaeqlleilrklreeGk.tvvisthdvd 188
ePt+ ld + + q+l+++++l+ee k tv++ thd+
MMSYN1_0167 400 EPTTALDVTIQAQILDLIKELKEEYKfTVIFITHDLG 436
**********************99764999*****75 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.5 0.0 4.8e-09 3.6e-07 329 384 .. 15 69 .. 2 140 .. 0.79
2 ! 45.2 0.0 2.1e-14 1.6e-12 427 526 .. 342 445 .. 302 448 .. 0.79
Alignments for each domain:
== domain 1 score: 27.5 bits; conditional E-value: 4.8e-09
TIGR02857 329 vayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvnga 384
++ + + ++++s+++ ge+va+vG+SG+GKs l k l ++e +G i+ ng+
MMSYN1_0167 15 FRVRSKVlTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLE-SNGYIA-NGS 69
3334444567899******************************998.778877.444 PP
== domain 2 score: 45.2 bits; conditional E-value: 2.1e-14
TIGR02857 427 evkealeragldelvkalpq.gleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalae 521
++++a ++++ +l+k ++ e++ + + + SgG rqR+ +A al+ ++l+ DEPt +LD + +a++l+ ++el + tv++++H+l +++
MMSYN1_0167 342 KLNRAEAKVEAINLMKRVGIpNAEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKeeYKFTVIFITHDLGVVA 439
5666666666666666554213456666777789*********************************************9433569********9988 PP
TIGR02857 522 l.adki 526
+ ad++
MMSYN1_0167 440 NiADRV 445
724555 PP
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.9 0.0 1.9e-07 1.4e-05 343 389 .. 13 58 .. 4 110 .. 0.82
2 ! 48.7 0.0 1.4e-15 1.1e-13 477 562 .. 375 463 .. 368 475 .. 0.90
Alignments for each domain:
== domain 1 score: 21.9 bits; conditional E-value: 1.9e-07
TIGR02204 343 vkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrf 389
vkf+ ++ ++++++++ + Getva+vG sG+Gks l + l
MMSYN1_0167 13 VKFRVRSKV-LTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNM 58
445544444.679*************************998877655 PP
== domain 2 score: 48.7 bits; conditional E-value: 1.4e-15
TIGR02204 477 LsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgr..ttlviahrLatvlk.adrivvldkGriveqGthaeLi 562
sGG +qr+ ia a+ ++L+ de t+aLd + ++ ++el ++ t + i h L v + adr++v+ G+i+e Gt ++++
MMSYN1_0167 375 YSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYkfTVIFITHDLGVVANiADRVAVMYAGQIIEYGTTQDVF 463
69********************************************98743367779*****998769****************99876 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.1 0.0 0.052 3.9 3 38 .. 32 66 .. 30 79 .. 0.83
2 ! 65.9 0.0 1.4e-20 1e-18 111 200 .. 372 463 .. 339 483 .. 0.83
Alignments for each domain:
== domain 1 score: 5.1 bits; conditional E-value: 0.052
TIGR03771 3 vdkGellgllGpnGaGkttllrailglikvakGsvk 38
+ Ge ++++G G+Gk+ l +++ +++ ++G +
MMSYN1_0167 32 IYDGETVAIVGESGSGKSVLTKTLTNMLE-SNGYIA 66
668******************99988887.677665 PP
== domain 2 score: 65.9 bits; conditional E-value: 1.4e-20
TIGR03771 111 vGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelage.gtailmtthdlaeavatcdrv.vllngrvvadgapdqlq 200
G+ sGG rqrv++a ala +p++l+ dep t ld+ q ++++l++el +e + +++ thdl +++drv v+ g+++ g+ +++
MMSYN1_0167 372 PGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEyKFTVIFITHDLGVVANIADRVaVMYAGQIIEYGTTQDVF 463
399**********************************************99835699****************9456689***999999875 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.8 0.1 2.7e-05 0.002 2 69 .. 5 80 .. 4 145 .. 0.82
2 ! 54.9 0.0 3e-17 2.2e-15 118 230 .. 346 463 .. 310 468 .. 0.77
Alignments for each domain:
== domain 1 score: 15.8 bits; conditional E-value: 2.7e-05
TIGR03411 2 iLevedvsvsf....dgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpd....eGsvlfkgkdltkl 69
iL+++d+ v+f +++++++s+++ +ge +i+G G+Gk+ l +t +++ +Gs+++ ++ t+
MMSYN1_0167 5 ILSIKDLVVKFrvrsKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESNgyiaNGSIMYYPNKATRE 80
78999999999333346889************************98877777655443111156666655555555 PP
== domain 2 score: 54.9 bits; conditional E-value: 3e-17
TIGR03411 118 keekerieevleligL...eekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelaker..svvvvehDmefvrelae 210
+e+k + ++++ +g+ e++ + g+ s G +q++ i++ l+ +pk+l+ DeP++ + + ++++ +l+kel++e +v+ + hD++ v+++a+
MMSYN1_0167 346 AEAKVEAINLMKRVGIpnaEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYkfTVIFITHDLGVVANIAD 443
3333334455666665221455677899***********************************************9864338999************* PP
TIGR03411 211 kvtvlheGkvlaeGsldevq 230
+v+v+ G+++ G+ ++v
MMSYN1_0167 444 RVAVMYAGQIIEYGTTQDVF 463
***************99886 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.8 0.0 3.9e-07 2.9e-05 30 78 .. 14 62 .. 2 89 .. 0.79
2 ! 48.9 0.0 1.2e-15 8.9e-14 127 254 .. 338 462 .. 330 470 .. 0.86
Alignments for each domain:
== domain 1 score: 20.8 bits; conditional E-value: 3.9e-07
TIGR00955 30 alarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekg 78
++ +++ + ++n+s ++ Ge +A++G SG+GK+ L ++l++ e++
MMSYN1_0167 14 KFRVRSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESN 62
4555556788899*****************************9987655 PP
== domain 2 score: 48.9 bits; conditional E-value: 1.2e-15
TIGR00955 127 rlkrrltkk.ekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktvilti 223
r + +l++ k e++ ++++++g+ ++++ pg+ SgG r+R+ +a l P++L+cDEPT+ LD + a+++ ++k+l ++ k ++ i
MMSYN1_0167 338 RNHSKLNRAeAKVEAI-NLMKRVGIPNAEKRYKDLPGK---YSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFI 431
4455555552555555.699*****************7...9***********************************************999877777 PP
TIGR00955 224 HQPsselfelfdkiillaeGrvvylGspeea 254
+ ++ d++ ++ G+++ G++++
MMSYN1_0167 432 THDLGVVANIADRVAVMYAGQIIEYGTTQDV 462
77788899***************99998764 PP
>> TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.2 0.3 0.00053 0.039 2 52 .. 6 60 .. 5 133 .. 0.84
2 ! 61.1 0.0 3.1e-19 2.3e-17 87 226 .. 323 466 .. 296 472 .. 0.88
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 0.00053
TIGR04406 2 lkaenlaksykkrk.v...vkdvslevksgeivGllGPnGaGkttsfymivGlvk 52
l++++l +++ r+ v ++++s+++ +ge v ++G G+Gk+ +++ +++
MMSYN1_0167 6 LSIKDLVVKFRVRSkVltsIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLE 60
5667777777655313122689*********************987776666655 PP
== domain 2 score: 61.1 bits; conditional E-value: 3.1e-19
TIGR04406 87 ifrkltveenlkavlelredldkeereekleelleeleiahlrek...kaaslsGGerrrveiaralaaePkfilldePfagvdPiavsdikklikll 181
+ l+v + vl +++l+++e + ++ +l++ + i + +++ + sGG r+rv ia ala++Pk+++ deP +++d +i lik l
MMSYN1_0167 323 LNPLLSVGYQISEVLRNHSKLNRAEAKVEAINLMKRVGIPNAEKRykdLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKEL 420
5556899999*****************************87765411156799*******************************99999********* PP
TIGR04406 182 ker.giGvlitdhnvretldivdrayivseGkvlaeGsaeeivane 226
ke+ v+ h+ + +i+dr ++++G++++ G+++++ n+
MMSYN1_0167 421 KEEyKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFNS 466
975378999999****************************998775 PP
>> TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.8 0.3 7.5e-07 5.5e-05 474 526 .. 6 61 .. 1 75 [. 0.80
2 ! 50.2 0.0 4.8e-16 3.5e-14 611 696 .. 374 463 .. 353 472 .. 0.90
Alignments for each domain:
== domain 1 score: 19.8 bits; conditional E-value: 7.5e-07
TIGR01193 474 ievndvsysyGygsevl...edislkikknekitlvGlsGsGkstlakllvkffqa 526
++++d+ ++ s+vl +is++i e++++vG sGsGks l+k l ++ ++
MMSYN1_0167 6 LSIKDLVVKFRVRSKVLtsiRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLES 61
567777777778888762225899**************************998764 PP
== domain 2 score: 50.2 bits; conditional E-value: 4.8e-16
TIGR01193 611 sisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdk...tiifvahrls.vakksdkiivldeGkiieqGshkell 696
+ sgG +qr+ +a al kvli de t+ ld+ ++ +i++ + +lk+ t+if++h l va+ +d++ v+ G+iie G+ ++++
MMSYN1_0167 374 KYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEykfTVIFITHDLGvVANIADRVAVMYAGQIIEYGTTQDVF 463
579*************************************99999998754569********7358899***************998865 PP
>> TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.2 0.8 1e-05 0.00074 2 68 .. 7 81 .. 6 160 .. 0.76
2 ! 55.0 0.1 2.9e-17 2.1e-15 106 203 .. 353 454 .. 327 462 .. 0.83
Alignments for each domain:
== domain 1 score: 17.2 bits; conditional E-value: 1e-05
TIGR03740 2 etknlskkfkkq....avvnnvslkvkknsvygllGpnGaGkstllklltGllrkt....sGeilldgrewtrkd 68
++k+l kf+ + + + n+s+ + + + +++G G+Gks l k lt +l+ + +G+i++ ++ tr++
MMSYN1_0167 7 SIKDLVVKFRVRskvlTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESNgyiaNGSIMYYPNKATREN 81
567777777655111145789********************************9753333789998888888876 PP
== domain 2 score: 55.0 bits; conditional E-value: 2.9e-17
TIGR03740 106 eevlkivdlentekkka...kqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpek.GitvilsshilsevelladhiGiise 199
+++k v++ n ek+ +++s Gm+qr+ iaial +Pk+li dePt ld ++ +lik ++e+ tvi+ +h l v ++ad + +++
MMSYN1_0167 353 INLMKRVGIPNAEKRYKdlpGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEyKFTVIFITHDLGVVANIADRVAVMYA 450
3578889988888875422379********************************88777899******987369************************ PP
TIGR03740 200 Gklk 203
G++
MMSYN1_0167 451 GQII 454
*985 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.4 0.0 1e-09 7.6e-08 333 393 .. 4 66 .. 1 86 [. 0.82
2 ! 40.2 0.0 5.4e-13 4e-11 472 530 .] 375 435 .. 371 435 .. 0.92
Alignments for each domain:
== domain 1 score: 29.4 bits; conditional E-value: 1e-09
TIGR02868 333 ptlelrdlsvsypgaeevl...kgvsldlepGervavvGasGaGKstLlallaglldplkGevt 393
+ l ++dl v++ ++vl +++s+d+ Ge va+vG sG+GKs L ++l+ +l+ ++G ++
MMSYN1_0167 4 VILSIKDLVVKFRVRSKVLtsiRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLE-SNGYIA 66
66889999999998888762225789******************************9.666655 PP
== domain 2 score: 40.2 bits; conditional E-value: 5.4e-13
TIGR02868 472 lSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt..vvlvthrl 530
SGG+rqR+++A aL +vl+ DEPt LD++ ++++l+ + + +e++ v+++th+l
MMSYN1_0167 375 YSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKftVIFITHDL 435
59***************************************999777776566******86 PP
>> TIGR01978 sufC: FeS assembly ATPase SufC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.3 0.0 2.9e-08 2.2e-06 1 62 [. 6 73 .. 6 86 .. 0.78
2 ! 39.5 0.0 1.3e-12 9.8e-11 109 230 .. 338 460 .. 320 473 .. 0.82
Alignments for each domain:
== domain 1 score: 25.3 bits; conditional E-value: 2.9e-08
TIGR01978 1 Lkikdlhvsved.keiL...kglnlevkkGevhaimGpnGsGkstLskvlag..hekyevtsGeiklk 62
L+ikdl+v+ ++L ++++ ++ Ge++ai+G GsGks L+k+l+ +++ +++G+i++
MMSYN1_0167 6 LSIKDLVVKFRVrSKVLtsiRNISFDIYDGETVAIVGESGSGKSVLTKTLTNmlESNGYIANGSIMYY 73
689999998764235552226889*************************9872255667999999875 PP
== domain 2 score: 39.5 bits; conditional E-value: 1.3e-12
TIGR01978 109 rgeeeldllefekllkeklellelde.elleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithye 204
r++++l+ +e + + + ++ + +++ e ++l +sGG ++r i + +Pk+ i De lDv + + +++l+ee + +++ ith
MMSYN1_0167 338 RNHSKLNRAEAKVEAINLMKRVGIPNaEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEyKFTVIFITHDL 435
5555566666655666666666665535556778888*************************************************89999******* PP
TIGR01978 205 rllelikPdvvhvlldGrivksGdve 230
++ +i+ d v v+++G+i++ G ++
MMSYN1_0167 436 GVVANIA-DRVAVMYAGQIIEYGTTQ 460
*****96.9************99876 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.0 0.0 7.2e-07 5.3e-05 349 393 .. 23 66 .. 1 116 [. 0.76
2 ! 43.9 0.0 4.1e-14 3e-12 410 557 .. 311 463 .. 299 478 .. 0.75
Alignments for each domain:
== domain 1 score: 20.0 bits; conditional E-value: 7.2e-07
TIGR01192 349 qgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqil 393
+r++sf++ g+tvaivg +g+gk+ l l + + +g+i
MMSYN1_0167 23 TSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLES-NGYIA 66
5799***********************999999988875.57765 PP
== domain 2 score: 43.9 bits; conditional E-value: 4.1e-14
TIGR01192 410 siatvfqda.gllnrsirenirlgredatdeevveaakaaaasdfiek.rlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldve 505
+iat+fqd ln + ++ + ++ a + a ++++ + + + + + sgg rqr+ ia a+ +l+ de t+aldv
MMSYN1_0167 311 TIATIFQDPmTSLNPLLSVGYQISEVLRNHSKLNRAEAKVEAINLMKRvGIPNAEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVT 408
56777777424456555555555555555555555555555555554313555666666667799********************************* PP
TIGR01192 506 tearvkdaidalrknr..ttfiiahrlstvre.adlvlfldqgrliekgsfdeli 557
+a++ d i l+++ t + i+h l v + ad v + g++ie g+ +++
MMSYN1_0167 409 IQAQILDLIKELKEEYkfTVIFITHDLGVVANiADRVAVMYAGQIIEYGTTQDVF 463
************98743367779*******9879****************99875 PP
>> TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.9 0.1 2.2e-05 0.0016 16 56 .. 23 63 .. 5 95 .. 0.78
2 ? -1.1 2.1 3.2 2.4e+02 202 254 .. 219 273 .. 180 303 .. 0.67
3 ! 54.9 0.1 2.9e-17 2.1e-15 99 218 .. 340 461 .. 320 471 .. 0.80
Alignments for each domain:
== domain 1 score: 15.9 bits; conditional E-value: 2.2e-05
TIGR03522 16 kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkads 56
++ ++sf++ Ge v +G G+Gks l k lt l++++
MMSYN1_0167 23 TSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESNG 63
346789*****************************998764 PP
== domain 2 score: -1.1 bits; conditional E-value: 3.2
TIGR03522 202 viiinkGkivadkkleelkaaek.kkvi.evefeeeidlqllekleevsevkklk 254
iin + v +++le++++ e +k + e+e++++ + +le+l ++ + ++ k
MMSYN1_0167 219 FQIINLINKVNNNQLEDINKLEPhIKWLdEIEYKNNFESLALEILYDIRSNQTKK 273
4578888889999999999888755544378999999999999998887765533 PP
== domain 3 score: 54.9 bits; conditional E-value: 2.9e-17
TIGR03522 99 saalyklkgrklkkrveelielvGl..kaeqhkki.galskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdk..tvilsthi 191
+++l + + k + +l+++vG+ ++++k + g+ s G rqrv +a al Pkvli dePtt ld +i ++ike+ ++ tvi+ th
MMSYN1_0167 340 HSKLNRAE---AKVEAINLMKRVGIpnAEKRYKDLpGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYkfTVIFITHD 434
44444444...4444556889999832345688876899*********************************************9863359******* PP
TIGR03522 192 mqevealcdrviiinkGkivadkklee 218
+ v + drv ++ G+i+ + ++
MMSYN1_0167 435 LGVVANIADRVAVMYAGQIIEYGTTQD 461
*******************98776665 PP
>> TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 55.9 0.0 1.1e-17 8.1e-16 1 86 [. 452 537 .. 452 538 .. 0.96
Alignments for each domain:
== domain 1 score: 55.9 bits; conditional E-value: 1.1e-17
TIGR01727 1 kivElgsaeelfknpkHPYtkaLlkaiPeikkrdekllkieGevpslinlpsgCvFaeRCpvakeeCkkeepelveiaeghkvaCh 86
+i+E+g+++++f n+kHPYt aLl+++P++++++e+l++i G +psl + ++ +Fa+R ++a + k ep + +i++ h ++ +
MMSYN1_0167 452 QIIEYGTTQDVFFNSKHPYTWALLSSLPQLGTKGEELYSISGTPPSLFKEIKADAFAPRNTFALAVDYKYEPPMFKISDTHYAKTW 537
79***************************************************************99999999*****99988766 PP
>> TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 0.9 3.5e-05 0.0026 322 383 .. 5 69 .. 1 158 [. 0.63
2 ! 39.0 0.0 1.2e-12 8.9e-11 105 250 .. 311 467 .. 267 470 .. 0.81
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 3.5e-05
TIGR03719 322 vievenlskafg..dkll..iddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGe 383
++ +++l +f +k+l i ++sf++ g v ++G G+Gks l k +t++ + +G + G+
MMSYN1_0167 5 ILSIKDLVVKFRvrSKVLtsIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLE-SNGYIANGS 69
556666666554114555446899*********************99999998755.457777665 PP
== domain 2 score: 39.0 bits; conditional E-value: 1.2e-12
TIGR03719 105 eisaklaeedadfdklleeqaklqekidaad.awdldskleia..mdalrlpeedakvekl....sGGekrrvalcrlllekPdlllldePtnhld.. 193
i++ + ++ ++ ll+ ++ e + +++ + k+e m+ + +p+++++ ++l sGG ++rv ++ l +P +l+ dePt ld
MMSYN1_0167 311 TIATIFQDPMTSLNPLLSVGYQISEVLRNHSkLNRAEAKVEAInlMKRVGIPNAEKRYKDLpgkySGGMRQRVVIAIALACRPKVLICDEPTTALDvt 408
577778888888888888888888888766514556778886433677778999988876555559*****************************944 PP
TIGR03719 194 ..aesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqk 250
a+ ++ +++ +eyk tv+ +thd + n+a+ + + G+ i y + +++ k
MMSYN1_0167 409 iqAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFNSK 467
445566677777789*******************************9988777776666 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.7 0.0 0.00061 0.045 20 55 .. 25 60 .. 6 89 .. 0.84
2 ! 38.4 0.0 2.2e-12 1.6e-10 135 218 .. 374 458 .. 360 466 .. 0.92
Alignments for each domain:
== domain 1 score: 10.7 bits; conditional E-value: 0.00061
TIGR01288 20 vndlsftiaagecfgllgpngagkstiarlvlglis 55
+ ++sf i ge ++g g+gks +++ + +
MMSYN1_0167 25 IRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLE 60
5799*************************9988875 PP
== domain 2 score: 38.4 bits; conditional E-value: 2.2e-12
TIGR01288 135 dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargk.tilltthlmeeaerlcdrlcvleagrkiaegr 218
+ sggm++r+ +a al p++li deptt ld + i + ++ l k t+++ th + + dr+ v+ ag+ i g
MMSYN1_0167 374 KYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKfTVIFITHDLGVVANIADRVAVMYAGQIIEYGT 458
679********************************************9988769999*********************9987776 PP
>> TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.0 0.0 2.5e-06 0.00018 1295 1339 .. 18 62 .. 6 86 .. 0.63
2 ! 22.6 0.0 4.9e-08 3.6e-06 1422 1507 .. 375 463 .. 363 473 .. 0.78
Alignments for each domain:
== domain 1 score: 17.0 bits; conditional E-value: 2.5e-06
TIGR00957 1295 redldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesa 1339
r ++ +r+++ i ge v ivg +g+gks lt +l ++es
MMSYN1_0167 18 RSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESN 62
445555567777777777777777777777777777777666652 PP
== domain 2 score: 22.6 bits; conditional E-value: 4.9e-08
TIGR00957 1422 lsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfed..ctvltiahrlntimdyt.rvlvldkgevaefdapsell 1507
s g rq v +a al + k+l+ de t+a+d+ + i i+ e+ tv+ i+h l + + + rv v+ g++ e+++ +++
MMSYN1_0167 375 YSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEykFTVIFITHDLGVVANIAdRVAVMYAGQIIEYGTTQDVF 463
56788888888888888888888888888888888888888888766642268888888888888764488888888888888877765 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.0 0.0 2.9e-06 0.00021 13 53 .. 22 62 .. 6 89 .. 0.78
2 ! 22.3 0.0 2.8e-07 2.1e-05 92 182 .. 335 429 .. 320 443 .. 0.77
Alignments for each domain:
== domain 1 score: 19.0 bits; conditional E-value: 2.9e-06
TIGR01189 13 rvlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpe 53
+ ++++sf++ Ge+++++G+ G+GK+ L ++l+ +l+++
MMSYN1_0167 22 LTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESN 62
455789*****************************998764 PP
== domain 2 score: 22.3 bits; conditional E-value: 2.8e-07
TIGR01189 92 EnLkfyaallqseqk.tveealekvgLsgledlpv...aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivll 182
E L+ +++l ++e k ++ + +++vg+ ++e++ + s G ++R+ +a l + ++ i DEPttalD++ ++++ +l+++ ++ +++
MMSYN1_0167 335 EVLRNHSKLNRAEAKvEAINLMKRVGIPNAEKRYKdlpGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKFTVI 429
66777777777666668888999999988887654111679**********************************99999999887665544433 PP
>> TIGR00956 3a01205: pleiotropic drug resistance family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.6 0.0 5.8e-05 0.0043 759 825 .. 5 72 .. 1 104 [. 0.89
2 ! 29.4 0.1 4.9e-10 3.6e-08 211 298 .. 376 462 .. 369 468 .. 0.90
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 5.8e-05
TIGR00956 759 ifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvt.tGvitegdrlv 825
i +++dl + +++++ ++ + +++ + G+ A++G+sG Gk L +L++ ++ G+i +g ++
MMSYN1_0167 5 ILSIKDLVVKFRVRSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLEsNGYIANGSIMY 72
78899***********************************************987527****999885 PP
== domain 2 score: 29.4 bits; conditional E-value: 4.9e-10
TIGR00956 211 sGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkadka 298
sGG r+Rv ia +l++++k+++ D+ t+ LD + +++ +k+ e k t++ + + ++ d+v v+y+G++i +G+++ +
MMSYN1_0167 376 SGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDL-GVVANIADRVAVMYAGQIIEYGTTQDV 462
9**********************************************9999987655555.56779*****************99865 PP
>> TIGR01257 rim_protein: rim ABC transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.7 0.0 1.3 99 931 980 .. 8 59 .. 6 66 .. 0.69
2 ! 31.3 0.0 7.7e-11 5.7e-09 1037 1144 .. 347 459 .. 334 474 .. 0.69
Alignments for each domain:
== domain 1 score: -2.7 bits; conditional E-value: 1.3
TIGR01257 931 vknlvkifepsgrpavdrlnitf..yenqitaflghngagktttlsiltgll 980
+k+lv f + ni+f y+ + a++g g+gk+ lt +l
MMSYN1_0167 8 IKDLVVKFRVRSKVLTSIRNISFdiYDGETVAIVGESGSGKSVLTKTLTNML 59
5666666666666655555665544888888888999998888777777776 PP
== domain 2 score: 31.3 bits; conditional E-value: 7.7e-11
TIGR01257 1037 eaqlemeamledtgl..hhkrnee.aqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll..lkyrsgrtiimsthhmdeadllg 1127
ea++e +++ g+ kr ++ sgg+++++ +aia+ kv++ dept+ +d + i dl+ lk t+i+ th + +
MMSYN1_0167 347 EAKVEAINLMKRVGIpnAEKRYKDlPGKYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIkeLKEEYKFTVIFITHDLGVVANIA 442
555555556666665222344443134568888888888888888888888888888888888888888874455556678888888888888888 PP
TIGR01257 1128 driaiisqgrlycsgtp 1144
dr+a++ g++ gt
MMSYN1_0167 443 DRVAVMYAGQIIEYGTT 459
88888888877665553 PP
>> TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.8 0.1 1.5e-06 0.00011 1218 1277 .. 6 67 .. 2 76 .. 0.86
2 ! 10.9 0.0 0.00017 0.013 549 634 .. 375 462 .. 351 489 .. 0.81
Alignments for each domain:
== domain 1 score: 17.8 bits; conditional E-value: 1.5e-06
TIGR01271 1218 mtvkdltakyteagrav..lqdlsfsveagqrvgllgrtgsgkstllsallrllstegeiqi 1277
+++kdl +k+ + + ++++sf + g++v ++g +gsgks l +l +l+++g i
MMSYN1_0167 6 LSIKDLVVKFRVRSKVLtsIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESNGYIAN 67
578999999987776543379************************************99875 PP
== domain 2 score: 10.9 bits; conditional E-value: 0.00017
TIGR01271 549 lsggqrarislaravykdadlylldspfsyldvvtekeifescl.ckllanktrilvtsklehlkk.adkilllhegscyfygtfsel 634
sgg r r+ +a a+ + + d p + ldv+ + +i++ k + t i++t l + + ad++ +++ g+ ygt ++
MMSYN1_0167 375 YSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKeLKEEYKFTVIFITHDLGVVANiADRVAVMYAGQIIEYGTTQDV 462
6899999999999999999999999999999999999999854313334455888999999887543999999999999999997764 PP
>> TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.2 0.0 0.00029 0.021 469 502 .. 25 58 .. 12 80 .. 0.88
2 ! 15.7 0.0 1.3e-05 0.00092 583 638 .. 374 433 .. 339 438 .. 0.78
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 0.00029
TIGR00954 469 ieeLsfevksGnhlLiiGPnGcGKsslfRilgel 502
i ++sf++ +G+ + i+G G GKs l ++l+++
MMSYN1_0167 25 IRNISFDIYDGETVAIVGESGSGKSVLTKTLTNM 58
7899*************************99876 PP
== domain 2 score: 15.7 bits; conditional E-value: 1.3e-05
TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelake....vgitllsvsh 638
sgG +qR+ +A + +Pk + DE t A+ v + ++ +l+ke +++t++ ++h
MMSYN1_0167 374 KYSGGMRQRVVIAIALACRPKVLICDEPTTALDVTIQAQILDLIKElkeeYKFTVIFITH 433
579**********************************99998887522226788888887 PP
>> TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.1 0.0 0.00016 0.012 358 390 .. 26 58 .. 5 87 .. 0.86
2 ! 10.4 0.0 0.00054 0.04 437 549 .. 339 455 .. 328 459 .. 0.79
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 0.00016
TIGR01194 358 GpidlriasGelvyivGenGcGkstliklllGl 390
i + i +Ge v ivGe G Gks l k l +
MMSYN1_0167 26 RNISFDIYDGETVAIVGESGSGKSVLTKTLTNM 58
568899**********************99765 PP
== domain 2 score: 10.4 bits; conditional E-value: 0.00054
TIGR01194 437 kqasldqattylsrleledkvkvedln..yst.ttdlstGqrkrlalvnayleerp.vllldewaadqdpafkrvfyeellpdlkrrGk.tilvishd 529
+++ l++a+ ++ ++l ++v + + + y + s G r+r+ + a rp vl+ de ++ d + + +l+ +lk + k t++ i+hd
MMSYN1_0167 339 NHSKLNRAEAKVEAINLMKRVGIPNAEkrYKDlPGKYSGGMRQRVVIAIALA-CRPkVLICDEPTTALDVTIQAQI-LDLIKELKEEYKfTVIFITHD 434
6788888999999999999999876541254314567999999998777755.5554999***********99776.589******99879999**** PP
TIGR01194 530 dr.yfeladrlikladGkvvk 549
++adr+ + +G++++
MMSYN1_0167 435 LGvVANIADRVAVMYAGQIIE 455
761569***********9986 PP
>> TIGR00630 uvra: excinuclease ABC subunit A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.1 0.1 0.001 0.076 622 654 .. 24 55 .. 12 69 .. 0.64
2 ? -3.9 4.5 8.8 6.5e+02 363 452 .. 140 228 .. 65 271 .. 0.58
3 ! 21.9 0.0 1.4e-07 1e-05 829 899 .. 375 444 .. 333 459 .. 0.89
Alignments for each domain:
== domain 1 score: 9.1 bits; conditional E-value: 0.001
TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLindiL 654
+++i+ +i g+ ++i G sgsGks L ++L
MMSYN1_0167 24 SIRNISFDIYDGETVAIVGESGSGKSVLT-KTL 55
46666666666666666666666666553.344 PP
== domain 2 score: -3.9 bits; conditional E-value: 8.8
TIGR00630 363 kekekarlkkefeGvleelerryketeseaarealekflsekaCpsCkgtrlkkealavkvegksiadvselsveealeffeellkleee 452
+ ++ka l k++e + ++ +k +e ++ ++l++ ++ k p+ +++ ++++ ++k+i +++++ + + +++f+ + +++
MMSYN1_0167 140 ELQQKADLLKKYEF-TNSTKKLVKRNEYLEQIKQLKEQIEWKKDPKKLDFEIQQLEKTIQTAKKEIYNFKTVNIYKKFRYFQIINLINKV 228
23333455555552.333444444444444445566666666666666666777777777777888888888888877777765333333 PP
== domain 3 score: 21.9 bits; conditional E-value: 1.4e-07
TIGR00630 829 LsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGn.tvvviehnldviks.aDy 899
sGG qrv +a L r + i DePtt L + +++l+++++l ++ + tv+ i h+l v+ + aD
MMSYN1_0167 375 YSGGMRQRVVIAIALACRP---KVLICDEPTTALDVTIQAQILDLIKELKEEYKfTVIFITHDLGVVANiADR 444
69*************9885...589************************99865599********99642665 PP
>> TIGR00455 apsK: adenylyl-sulfate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.7 0.0 0.00048 0.035 17 48 .. 34 65 .. 21 68 .. 0.89
2 ? -0.3 0.0 2.3 1.7e+02 106 129 .. 415 438 .. 407 446 .. 0.86
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 0.00048
TIGR00455 17 ksvvlWltGlsgsGkstianalekkLeekglr 48
++ ++ + G sgsGks++++ l + Le++g+
MMSYN1_0167 34 DGETVAIVGESGSGKSVLTKTLTNMLESNGYI 65
56788899********************9985 PP
== domain 2 score: -0.3 bits; conditional E-value: 2.3
TIGR00455 106 devrelveegkfievyvkvpLevc 129
d ++el ee kf +++ +L v
MMSYN1_0167 415 DLIKELKEEYKFTVIFITHDLGVV 438
6789999*************9986 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (566 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 557 (0.124109); expected 89.8 (0.02)
Passed bias filter: 198 (0.0441176); expected 89.8 (0.02)
Passed Vit filter: 88 (0.0196078); expected 4.5 (0.001)
Passed Fwd filter: 61 (0.0135918); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 61 [number of targets reported over threshold]
# CPU time: 0.61u 0.19s 00:00:00.80 Elapsed: 00:00:00.35
# Mc/sec: 2322.29
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0167 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0168 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0168.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0168/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0168 [L=622]
Description: AmiF? 2=Generic Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-54 183.0 1.0 2.3e-35 120.3 0.0 3.4 3 TIGR02769 nickel_nikE: nickel import ATP-binding protein Nik
3.5e-43 145.6 2.2 5.3e-32 109.0 0.0 3.8 4 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
2.6e-36 123.5 0.1 4.8e-26 89.8 0.0 2.7 3 TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transp
3.8e-36 122.9 3.9 7.9e-29 98.8 0.1 2.8 2 TIGR01186 proV: glycine betaine/L-proline transport ATP bind
4.1e-36 122.4 0.5 5.2e-26 89.3 0.0 2.6 2 TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transport
1.7e-35 120.6 8.2 6.8e-23 79.3 0.7 3.5 2 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
3.4e-35 119.4 5.0 8.5e-25 85.3 0.0 3.4 3 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
1.5e-34 117.5 0.8 2.1e-28 97.3 0.0 3.6 4 TIGR01187 potA: polyamine ABC transporter, ATP-binding prote
2.2e-34 117.0 1.5 7.5e-25 85.6 0.0 3.1 3 TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-bindi
2.4e-34 116.9 1.8 4.9e-23 79.9 0.0 3.4 3 TIGR04520 ECF_ATPase_1: energy-coupling factor transporter A
3.9e-34 116.2 1.5 2.1e-25 87.6 0.0 3.0 3 TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding pr
2e-32 110.6 5.0 1.8e-22 78.0 0.1 3.5 3 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
3.6e-32 109.6 0.1 9.1e-25 85.3 0.0 2.6 2 TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-bindin
3.7e-32 109.6 0.3 1.5e-20 71.6 0.0 2.6 2 TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-bi
4.7e-30 102.7 5.4 3.7e-23 80.1 0.0 3.8 4 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
5.7e-30 102.7 0.4 6.2e-23 79.6 0.1 2.4 2 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
1.9e-29 100.8 0.1 3.7e-20 70.4 0.0 2.3 2 TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein
8e-29 98.7 0.1 9.6e-23 78.7 0.0 2.4 2 TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system
9.5e-29 98.0 0.1 9.6e-19 65.0 0.0 2.3 2 TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC trans
1.1e-28 98.1 7.3 6e-17 59.3 0.0 2.7 3 TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system
2.4e-28 97.1 0.5 2.5e-18 64.4 0.1 2.4 2 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
5e-28 96.2 4.6 1.1e-19 69.0 0.0 3.9 4 TIGR02673 FtsE: cell division ATP-binding protein FtsE
5.2e-28 96.1 2.8 3e-19 67.4 0.0 3.6 3 TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP
1.8e-26 90.8 0.9 1.9e-15 54.4 0.1 2.6 2 TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
3.3e-26 89.7 0.5 8e-16 55.4 0.0 2.4 2 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
1.3e-25 87.9 0.4 5.5e-18 62.8 0.0 2.2 2 TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC trans
7.7e-25 85.8 0.0 2.2e-17 61.3 0.0 2.5 2 TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding protei
1.7e-24 84.4 0.6 2.1e-18 64.5 0.0 4.2 5 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
5e-24 82.5 0.1 9.5e-19 65.1 0.0 2.2 2 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
7.6e-24 81.9 0.0 3e-18 63.4 0.0 2.5 2 TIGR00958 3a01208: antigen peptide transporter 2
8e-24 82.4 0.1 1.3e-18 65.4 0.0 2.5 2 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
1.4e-23 81.7 0.1 3.8e-13 47.2 0.0 2.1 2 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
1.1e-22 78.2 2.5 8.3e-15 52.2 0.0 2.6 2 TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding p
1.4e-22 78.0 0.5 6e-17 59.3 0.0 2.3 2 TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
1.6e-21 74.5 0.0 3.6e-15 53.6 0.0 2.2 2 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
2.5e-21 74.0 0.3 5.1e-12 43.6 0.0 3.5 3 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
4.8e-21 73.1 1.2 4.8e-12 43.6 0.1 2.6 2 TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-bi
2e-20 71.4 11.4 4.9e-15 53.8 0.1 3.3 3 TIGR03740 galliderm_ABC: lantibiotic protection ABC transpor
3.2e-20 70.8 0.0 3.4e-13 47.8 0.0 2.3 2 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
3.4e-20 70.7 1.9 2e-11 42.0 0.0 3.1 3 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
6.6e-20 69.4 0.0 3.5e-13 47.3 0.0 2.2 2 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
1.5e-19 68.0 0.0 7.7e-11 39.2 0.0 2.3 2 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
8.8e-19 65.8 0.2 1.6e-10 38.8 0.0 2.6 2 TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein
2.1e-18 64.0 0.2 1.2e-09 35.2 0.0 2.5 2 TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protei
2.3e-18 64.7 5.4 3.5e-13 47.6 0.0 3.0 3 TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC tran
3.8e-18 63.8 0.0 1.3e-12 45.6 0.0 2.5 2 TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit,
6e-18 63.1 0.5 5e-11 40.4 0.0 2.6 2 TIGR01978 sufC: FeS assembly ATPase SufC
1.1e-17 62.4 0.0 5.5e-08 30.7 0.0 2.5 2 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
3.5e-16 56.9 0.1 1e-11 42.1 0.0 2.3 2 TIGR01192 chvA: glucan exporter ATP-binding protein
2.1e-14 51.2 0.1 2.6e-06 24.6 0.0 2.5 3 TIGR01288 nodI: nodulation ABC transporter NodI
2.5e-14 50.7 3.3 7.4e-10 36.0 0.1 2.6 2 TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD f
3.4e-13 47.0 5.8 7.7e-09 32.6 0.0 2.8 3 TIGR00955 3a01204: pigment precursor permease
1.3e-11 41.7 3.4 1e-08 32.1 0.0 2.9 2 TIGR00954 3a01203: peroxysomal long chain fatty acyl transpo
1.4e-09 33.3 0.0 5.2e-07 24.8 0.0 2.1 2 TIGR01257 rim_protein: rim ABC transporter
3.5e-08 29.3 2.1 5.7e-07 25.3 0.0 2.4 3 TIGR00957 MRP_assoc_pro: multi drug resistance-associated pr
1.1e-07 27.8 0.1 0.00023 16.8 0.0 2.4 2 TIGR00956 3a01205: pleiotropic drug resistance family protei
4.1e-07 28.0 0.1 8.9e-07 26.9 0.1 1.5 1 TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter,
2.6e-06 23.1 2.2 0.0013 14.2 0.0 2.7 3 TIGR01271 CFTR_protein: cystic fibrosis transmembrane conduc
0.0051 13.3 0.4 0.37 7.2 0.1 2.2 2 TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
Domain annotation for each model (and alignments):
>> TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.6 0.0 7e-10 5.3e-08 21 75 .. 23 77 .. 13 106 .. 0.79
2 ! 29.0 0.0 2.1e-09 1.6e-07 79 129 .. 352 402 .. 342 410 .. 0.87
3 ! 120.3 0.0 3e-37 2.3e-35 127 262 .. 430 566 .. 409 569 .. 0.90
Alignments for each domain:
== domain 1 score: 30.6 bits; conditional E-value: 7e-10
TIGR02769 21 kqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdl 75
+++ + +++v + + +Get +l+G+sG+Gk+t++r ++G++ ++G + f+ + l
MMSYN1_0168 23 RNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLL 77
566778899****************************************976533 PP
== domain 2 score: 29.0 bits; conditional E-value: 2.1e-09
TIGR02769 79 drkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkar 129
++k+ k ++d+q++fqd s++n r++v+eii+e l ++ +l ++ ++
MMSYN1_0168 352 NKKELKENKKDMQMIFQDPSSSLNERMAVEEIIKEGLDNFPELYSNDEVKK 402
67888999********************************99977666555 PP
== domain 3 score: 120.3 bits; conditional E-value: 3e-37
TIGR02769 127 kariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvl 224
+ i++lle+v+l +e+l ++P+++sGGq qri iaral ++Pk++v de +s ld+ +a+i++ll k++++f l+y+fi+hdl++v+ ++r++v+
MMSYN1_0168 430 RFLINQLLETVGLLPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFATDRIAVI 527
345899******************************************************************************************** PP
TIGR02769 225 deGqiveeikvaellsf.khpagrllqeavlpelPvrrs 262
+G ive + el+ + hp +r l +a+ + Pv+ s
MMSYN1_0168 528 YRGDIVELAESNELFDLpLHPYTRSLLSAIPLPDPVQES 566
**********999987636***********877887765 PP
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.9 0.0 4.4e-09 3.3e-07 2 69 .. 29 99 .. 28 119 .. 0.79
2 ? -1.8 0.1 5.2 4e+02 45 97 .. 144 200 .. 133 215 .. 0.65
3 ? 6.1 0.0 0.019 1.5 56 97 .. 355 397 .. 342 416 .. 0.79
4 ! 109.0 0.0 7e-34 5.3e-32 100 228 .. 430 556 .. 401 558 .. 0.90
Alignments for each domain:
== domain 1 score: 27.9 bits; conditional E-value: 4.4e-09
TIGR02770 2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal........alrgreialilq 69
v++v +++ +g+ +lvGesGsGk++ ai+g+++ ++G i++++k l + + r++ +i+q
MMSYN1_0168 29 VKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQP----ISDGAIYFENKLLRGKspdvykinQKIARHL-YIMQ 99
899*********************************....7899999998888776666653332223333.4444 PP
== domain 2 score: -1.8 bits; conditional E-value: 5.2
TIGR02770 45 Geilldgkelaal....alrgreialilqnPrsafnPlltikeqlletlkaleklsk 97
+i+ +g +l+++ ++ ++++++q + + ll i + + ++++++sk
MMSYN1_0168 144 SRIIKEGVNLNTTklvsVKKNANLSIVIQAITDNLKRLLKIIRLQEKASRITKNISK 200
466677777777744423345678999999888888888876655555555555554 PP
== domain 3 score: 6.1 bits; conditional E-value: 0.019
TIGR02770 56 alalrgreialilqnPrsafnPlltikeqlletlkalekls.k 97
+l+ ++++ +i+q+P s++n ++++e ++e l +l+ +
MMSYN1_0168 355 ELKENKKDMQMIFQDPSSSLNERMAVEEIIKEGLDNFPELYsN 397
556678899***********************99887777633 PP
== domain 4 score: 109.0 bits; conditional E-value: 7e-34
TIGR02770 100 kelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladeva 197
+ li + le vgL e l+ yp+e+sGG qR+ ia al++++ +++aDeP ++lDv ++a++++ll +++++++l+ ++i+hDl+vv d +a
MMSYN1_0168 430 RFLINQLLETVGLL--PEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFATDRIA 525
33566778999998..5679****************************************************************************** PP
TIGR02770 198 vmekGkivergtvkelfqePkhettrkLlsa 228
v+ +G ive ++ +elf+ P h +tr+Llsa
MMSYN1_0168 526 VIYRGDIVELAESNELFDLPLHPYTRSLLSA 556
****************************997 PP
>> TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.7 0.0 5.7e-10 4.4e-08 15 73 .. 24 82 .. 6 87 .. 0.83
2 ? -2.5 0.0 7.3 5.5e+02 70 103 .. 355 390 .. 344 408 .. 0.78
3 ! 89.8 0.0 6.3e-28 4.8e-26 112 231 .. 430 550 .. 416 573 .. 0.90
Alignments for each domain:
== domain 1 score: 30.7 bits; conditional E-value: 5.7e-10
TIGR03265 15 eaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlpp 73
++ +a+k + ++v kge l+G sG Gktt+ r+i G++ + Gai+ +++ + +p
MMSYN1_0168 24 NKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSP 82
47899*******************************************99987766555 PP
== domain 2 score: -2.5 bits; conditional E-value: 7.3
TIGR03265 70 rlppqkrdyGivfq..sYaLfPnltvaeniayGLkn 103
+l +k+d ++fq s +L ++v+e i+ GL n
MMSYN1_0168 355 ELKENKKDMQMIFQdpSSSLNERMAVEEIIKEGLDN 390
566789999999996667899999999999999987 PP
== domain 3 score: 89.8 bits; conditional E-value: 6.3e-28
TIGR03265 112 aerveelLelvgl.sgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvm 208
+ +++lLe+vgl ++ ++yP +sGGq+qr+ +aral+++P++++ DeP+saLD +r+++ + l k+q+++++t i ++hd +Dri+v+
MMSYN1_0168 430 RFLINQLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFATDRIAVI 527
44689*******7367789*********************************************************************9********* PP
TIGR03265 209 nkgkieqvgtPeeiYeqPatkfv 231
+g i ++ +e+++ P ++
MMSYN1_0168 528 YRGDIVELAESNELFDLPLHPYT 550
***************99987765 PP
>> TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.5 0.1 4.1e-08 3.1e-06 7 81 .. 27 102 .. 22 143 .. 0.80
2 ! 98.8 0.1 1e-30 7.9e-29 97 235 .. 419 559 .. 410 575 .. 0.88
Alignments for each domain:
== domain 1 score: 24.5 bits; conditional E-value: 4.1e-08
TIGR01186 7 lgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkia...mviqkia 81
++v+ v +++++Ge + ++G sGsGk+t+ r + + + G i+ + + + s++ ++ +kia +++q+
MMSYN1_0168 27 KAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPDVY-KI-NQKIArhlYIMQQNQ 102
79*******************************98877799****99988888887765.23.344442335566555 PP
== domain 2 score: 98.8 bits; conditional E-value: 1e-30
TIGR01186 97 ellkideqerke.kalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdlde 192
e+ +id+++ k+ ++l v+l +e+ ryP+e+sGG++qr+G+aral ++P+ ++ de+ sald ir ++ + l k+qk+ + t +fi+hdl
MMSYN1_0168 419 EISEIDKKDIKRfLINQLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSV 516
55566665544414567899***99***********************************************************************98 PP
TIGR01186 193 alrlgdrivilkaGeivqvGtPdeilrnPaneyveefiekvdl 235
+dri+++ G+iv + +e++ P y + ++ + l
MMSYN1_0168 517 VRFATDRIAVIYRGDIVELAESNELFDLPLHPYTRSLLSAIPL 559
77778************************99999998876655 PP
>> TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.4 0.0 6.4e-10 4.9e-08 11 87 .. 24 100 .. 16 110 .. 0.90
2 ! 89.3 0.0 6.8e-28 5.2e-26 129 250 .. 435 557 .. 416 558 .. 0.94
Alignments for each domain:
== domain 1 score: 30.4 bits; conditional E-value: 6.4e-10
TIGR03005 11 geltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvre 87
++l+ ++g+ ++v +Ge l+G sGsGk+ti r ++ +++i++G i e + l ++ k+ + ++hl +++
MMSYN1_0168 24 NKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPDVYKINQKIARHLYIMQQ 100
578999*******************************************9999988888888888888888887765 PP
== domain 2 score: 89.3 bits; conditional E-value: 6.8e-28
TIGR03005 129 elldmvGl.adkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGki 225
+ll+ vGl + +p ++sGGq+qr+ iaral ++pk ++ de+ sald + +++n+l ++ ++ dlt ++++h++ r +dr+ ++G i
MMSYN1_0168 435 QLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFATDRIAVIYRGDI 532
89*****7368899************************************************************************************ PP
TIGR03005 226 veeGkpdeifrkpkeertreflkkv 250
ve + +e+f+ p + tr++l+++
MMSYN1_0168 533 VELAESNELFDLPLHPYTRSLLSAI 557
**********************987 PP
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.1 0.2 4.2e-13 3.2e-11 1 95 [. 9 108 .. 9 150 .. 0.79
2 ! 79.3 0.7 9e-25 6.8e-23 121 233 .. 426 541 .. 319 547 .. 0.70
Alignments for each domain:
== domain 1 score: 41.1 bits; conditional E-value: 4.2e-13
TIGR02315 1 llevenlskvypngkqal...knvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkig...mifqeynlie 92
+l+v++l +++ng++ l k v +++ kGe +++G+sG+Gk+t+ r+i +++ is+g+i++e+k ++ k ++ k+ +ki+ +i+q+ +l +
MMSYN1_0168 9 ILKVRDLLIEFGNGRNKLkavKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRG-KSPDVYKINQKIArhlYIMQQNQLTT 105
6899999999*99886651115678****************************************998874.55555555555543338999988876 PP
TIGR02315 93 rlt 95
l+
MMSYN1_0168 106 SLS 108
654 PP
== domain 2 score: 79.3 bits; conditional E-value: 9e-25
TIGR02315 121 edkek..AlelLervglaelaakra.dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadr 215
+d ++ +lLe vgl + +r + sGGq+qR++iaRal+ +pk ++aDEPi++LD + q+m+ll + k+ ++t i H++++++ +dr
MMSYN1_0168 426 KDIKRflINQLLETVGLLPEHLSRYpHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFATDR 523
233331134789****999998886379********************************************************************** PP
TIGR02315 216 ivglkageivfdgassel 233
i + g+iv ++s+el
MMSYN1_0168 524 IAVIYRGDIVELAESNEL 541
**********88888877 PP
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.6 0.2 8.6e-09 6.6e-07 12 86 .. 21 91 .. 10 108 .. 0.79
2 ! 7.7 0.4 0.0051 0.39 65 130 .. 343 410 .. 317 424 .. 0.72
3 ! 85.3 0.0 1.1e-26 8.5e-25 117 234 .. 425 543 .. 419 547 .. 0.94
Alignments for each domain:
== domain 1 score: 26.6 bits; conditional E-value: 8.6e-09
TIGR04521 12 kgtpfekkalkdvsleiekgefvaiiGhtGsGKstliqhlngLlkptsGeveidgleikakkkkkkklkelrkkv 86
+g + ka+k v++++ kge ++++G++GsGK+t+ + + g+ ++G ++++++ ++ k+ + + ++ +k+
MMSYN1_0168 21 NG-RNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPD---VYKINQKI 91
44.45889*********************************************99998443333...44555554 PP
== domain 2 score: 7.7 bits; conditional E-value: 0.0051
TIGR04521 65 dgleikakkkkkkklkelrkkvglvFQfpekQLFeetvlkdia.fgpknlg..lseeeveervkealel 130
++ ei k+ +kk+lke +k++ ++FQ p + L e+ ++i+ g n+ +s++ev++ +++ ++
MMSYN1_0168 343 KTAEIF-KSPNKKELKENKKDMQMIFQDPSSSLNERMAVEEIIkEGLDNFPelYSNDEVKKAYQQWFNQ 410
445564.4556667*********************9877776516888885335777787777777665 PP
== domain 3 score: 85.3 bits; conditional E-value: 1.1e-26
TIGR04521 117 eeevee.rvkealelvgldeellerspfeLSGGqkrrvAiagvLamepevLvlDEptaGLDpkgrkellellkklkkekgktvilvtHsmedvaelad 213
++++++ ++++le+vgl e l+r p+e+SGGq++r+ ia L m+p+++v DEp + LD + r ++++ll k++k+ ++t i+++H++ v +d
MMSYN1_0168 425 KKDIKRfLINQLLETVGLLPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFATD 522
555555247899************************************************************************************** PP
TIGR04521 214 rvivlkkGkvvldgtpeevfk 234
r+ v+ +G +v +++e+f+
MMSYN1_0168 523 RIAVIYRGDIVELAESNELFD 543
***************999995 PP
>> TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.7 0.0 1.8e-05 0.0014 1 45 [. 44 88 .. 44 97 .. 0.90
2 ? -1.0 0.1 2.3 1.7e+02 76 113 .. 173 210 .. 159 218 .. 0.81
3 ? -1.4 0.0 2.9 2.2e+02 198 278 .. 220 301 .. 212 329 .. 0.68
4 ! 97.3 0.0 2.7e-30 2.1e-28 71 220 .. 422 572 .. 417 611 .. 0.83
Alignments for each domain:
== domain 1 score: 15.7 bits; conditional E-value: 1.8e-05
TIGR01187 1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvn 45
l+G sGsGktt+ r + G++ ++ G i ++++ + +++ ++n
MMSYN1_0168 44 LVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPDVYKIN 88
68*****************************99888888877776 PP
== domain 2 score: -1.0 bits; conditional E-value: 2.3
TIGR01187 76 eikervkeaLelvqleefakrkpsqlsGGqrqrvalar 113
i++ k +L++++l+e a+r +++s +v l
MMSYN1_0168 173 AITDNLKRLLKIIRLQEKASRITKNISKHTSVKVELQD 210
577788999************99999977666666655 PP
== domain 3 score: -1.4 bits; conditional E-value: 2.9
TIGR01187 198 arfiGeinvfeatvierkeeslvlag..vegrelkikedlavekkqklqvvlrPekisieevaeansseavigevrditykGe 278
+ i +++ +e t+ + +e l + + eg+ +++ +++ + +l++v++ k+ ++++a++++ + + +yk +
MMSYN1_0168 220 HDSILKVKDLENTIYNTLQEMLAIRNdvNEGKYTSV-TKFFDQMGSRLKLVIKSQKLITPQLEDASHDQLMNLALTCPKYKNN 301
555555566666666666666655554334554444.4555677889999999999999999999999877766666666555 PP
== domain 4 score: 97.3 bits; conditional E-value: 2.7e-30
TIGR01187 71 kvpkaeiker.vkeaLelvql.eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealt 166
+++k++ik ++++Le+v l e +r+p+++sGGqrqr+ +ara++ kPk ++ Dep+saLD +r q+ + l ++q+++ +t ++++hD +
MMSYN1_0168 422 EIDKKDIKRFlINQLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRF 519
56777777642788999998527999************************************************************************ PP
TIGR01187 167 msdriavlrkGkiaqigepeeiyeePanefvarfiGeinvfeatvierkeeslv 220
+driav+ +G i+ +e++e+++ P ++ + + i + + + e k+ ++v
MMSYN1_0168 520 ATDRIAVIYRGDIVELAESNELFDLPLHPYTRSLLSAIPLPDPVQ-ESKKVHFV 572
**************************9999988888775554443.44444444 PP
>> TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.2 0.0 2.8e-09 2.1e-07 39 104 .. 28 96 .. 17 106 .. 0.89
2 ? -0.4 0.3 1.3 1e+02 288 350 .. 315 380 .. 298 388 .. 0.57
3 ! 85.6 0.0 9.8e-27 7.5e-25 132 267 .. 419 556 .. 404 611 .. 0.91
Alignments for each domain:
== domain 1 score: 28.2 bits; conditional E-value: 2.8e-09
TIGR03415 39 gvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkde...dkevdvakcdeatlrklr 104
+v+++++dv +Ge l+G sGsGk+++ ra+ g++p+s G + +++ k+ dv+k++++ r+l
MMSYN1_0168 28 AVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKllrGKSPDVYKINQKIARHLY 96
7999***************************************99986444789999999999999985 PP
== domain 2 score: -0.4 bits; conditional E-value: 1.3
TIGR03415 288 kvddelvlskrkdtylekad.kqveeaaaklalaataaeqevesleka.sllv.kpdtslrevlei 350
+ +++ l++++++++++ + +++ + ++ ++ ++ ++e + +k+ ++++ p++sl+e +++
MMSYN1_0168 315 NLNNKTKLAQEYESVIQTVEnSDFYDNLKTAEIFKSPNKKELKENKKDmQMIFqDPSSSLNERMAV 380
345566666666666666554555666666666666655555444433033334667777776665 PP
== domain 3 score: 85.6 bits; conditional E-value: 9.8e-27
TIGR03415 132 elsGvakaerrk.rveeqlelvgl.aeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdlde 227
e+s + k++ ++ +++ le vgl e ++++e+sGG +qr+G+ara+ ++ + ++ deP sald ira++ + l ++qk++ t +f++hdl
MMSYN1_0168 419 EISEIDKKDIKRfLINQLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSV 516
7778888886662578889****736899*******************************************************************99 PP
TIGR03415 228 alklGnriaimegGrivqlgtpeeivlkPaneyvadfvah 267
+ria++ G iv l +++e+ P + y +++++
MMSYN1_0168 517 VRFATDRIAVIYRGDIVELAESNELFDLPLHPYTRSLLSA 556
888899***************************9998765 PP
>> TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.2 0.1 9.1e-10 6.9e-08 3 80 .. 12 92 .. 10 122 .. 0.80
2 ? 4.4 0.1 0.066 5.1 66 105 .. 350 390 .. 319 411 .. 0.79
3 ! 79.9 0.0 6.4e-25 4.9e-23 106 225 .. 421 543 .. 411 563 .. 0.88
Alignments for each domain:
== domain 1 score: 30.2 bits; conditional E-value: 9.1e-10
TIGR04520 3 venvsfkYee..eekkalkdvsleiekgefvaiiGhNGsGKsTlakllnglllpeegkvlvdglet.leeenlweirkkvg 80
v+++ ++ + ++ ka+k+v++++ kge ++G+ GsGK+T+ + + g+ ++g+++ ++ ++ +++i +k++
MMSYN1_0168 12 VRDLLIEFGNgrNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLrGKSPDVYKINQKIA 92
5666666655547788********************************************987654045567888888876 PP
== domain 2 score: 4.4 bits; conditional E-value: 0.066
TIGR04520 66 tleeenlweirkkvglvfqnPdnqlvgat.veedvaFglEN 105
+ ++++l+e +k + ++fq+P l + vee + gl+N
MMSYN1_0168 350 SPNKKELKENKKDMQMIFQDPSSSLNERMaVEEIIKEGLDN 390
4578999999************9998654266666777777 PP
== domain 3 score: 79.9 bits; conditional E-value: 6.4e-25
TIGR04520 106 lgvpreeikk.rveealkkvgle.efrkkepkkLSGGqkqrvaiagvlalepeiiilDEatsmLDpkgrkevletvkklkkeekltvisitHdleeav 201
++++++ik+ +++ l++vgl e+ ++ p++ SGGq+qr+ ia +l ++p++++ DE+ s LD + r+++++++ k++k+ +lt i i+Hdl+ +
MMSYN1_0168 421 SEIDKKDIKRfLINQLLETVGLLpEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVR 518
344555555434899******753899********************************************************************997 PP
TIGR04520 202 ea.drvivlekgkivaegtpkeifs 225
a dr+ v+ +g+iv+ ++ +e+f
MMSYN1_0168 519 FAtDRIAVIYRGDIVELAESNELFD 543
5449***************999996 PP
>> TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.9 0.0 1.9e-08 1.4e-06 12 62 .. 25 75 .. 11 112 .. 0.85
2 ? -0.8 0.1 2.8 2.2e+02 106 144 .. 173 211 .. 155 228 .. 0.80
3 ! 87.6 0.0 2.7e-27 2.1e-25 98 232 .. 419 555 .. 414 558 .. 0.91
Alignments for each domain:
== domain 1 score: 25.9 bits; conditional E-value: 1.9e-08
TIGR00968 12 dfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGr 62
+++a++ v ++v +G+ +l+G sGsGk+t+ r+i G++ G i++e +
MMSYN1_0168 25 KLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENK 75
5789******************************************99865 PP
== domain 2 score: -0.8 bits; conditional E-value: 2.8
TIGR00968 106 kikakveellelvqleklgdrypsqlsGGqrqrvalara 144
+i +++++ll++++l++ ++r +++s +v l a
MMSYN1_0168 173 AITDNLKRLLKIIRLQEKASRITKNISKHTSVKVELQDA 211
456778899999999999999999999887777777665 PP
== domain 3 score: 87.6 bits; conditional E-value: 2.7e-27
TIGR00968 98 eirkkdkakika.kveellelvql.eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqee 193
ei +dk+ ik+ +++lle v+l + +ryp ++sGGqrqr+ +aral ++p+ ++ dep++ald +r ++ + l k+ ++ ++t +f++hd +
MMSYN1_0168 419 EISEIDKKDIKRfLINQLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSV 516
5666777776652689******97357789******************************************************************** PP
TIGR00968 194 alevadrivvlekGkieqvgsaeevydepatafvleflG 232
+dri+v+ +G i ++ ++e++d p ++ ++l
MMSYN1_0168 517 VRFATDRIAVIYRGDIVELAESNELFDLPLHPYTRSLLS 555
*****************************9999887765 PP
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.4 0.1 2.1e-10 1.6e-08 2 98 .. 10 108 .. 9 116 .. 0.88
2 ? -1.8 0.1 5.8 4.4e+02 111 152 .. 167 208 .. 151 219 .. 0.69
3 ! 78.0 0.1 2.3e-24 1.8e-22 119 219 .. 430 532 .. 339 533 .. 0.91
Alignments for each domain:
== domain 1 score: 32.4 bits; conditional E-value: 2.1e-10
TIGR02982 2 ikirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiG...yifqahnlles 96
+k+r+l +g+g+++ + ++ + +++ +ge l G+sGsGktt+ i g++ + +G + + +++l + + ++ ++ +ki yi+q+ l +s
MMSYN1_0168 10 LKVRDLLIEFGNGRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYF-ENKLLRGKSPDVYKINQKIArhlYIMQQNQLTTS 106
789999999***************************************************975.666666677888888888765559*****99999 PP
TIGR02982 97 lt 98
l
MMSYN1_0168 107 LS 108
86 PP
== domain 2 score: -1.8 bits; conditional E-value: 5.8
TIGR02982 111 eklsakeakakaeelleavgleerldykpedlsgGqkqrvai 152
++ ++ +++ + ll+ + l+e+ ++ +++s +v +
MMSYN1_0168 167 LSIVIQAITDNLKRLLKIIRLQEKASRITKNISKHTSVKVEL 208
345566677778889999999999999999988776666655 PP
== domain 3 score: 78.0 bits; conditional E-value: 2.3e-24
TIGR02982 119 kakaeelleavgl.eerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildva.drivkm 214
+ ++lle+vgl e+l+++p+++sgGq+qr+ iaral+ +Pk+v+adeP +ald + ++++ll k ++ t ++++hd ++ a dri +
MMSYN1_0168 430 RFLINQLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFAtDRIAVI 527
4456789999986378**********************************************************************999865899988 PP
TIGR02982 215 edGkl 219
+G +
MMSYN1_0168 528 YRGDI 532
88876 PP
>> TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.3 0.1 3.5e-07 2.6e-05 5 85 .. 13 92 .. 9 111 .. 0.77
2 ! 85.3 0.0 1.2e-26 9.1e-25 108 240 .. 419 553 .. 415 579 .. 0.89
Alignments for each domain:
== domain 1 score: 21.3 bits; conditional E-value: 3.5e-07
TIGR02314 5 ekiskvfdqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqig 85
+++ f +g +k+ka++ v++ v kg+ fg++g sg+gk+t+ r + ++ ++ga+ + k l + + +++ k ++i
MMSYN1_0168 13 RDLLIEFGNGRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENK-LLRGKSPDVYKINQKIA 92
55555688999***********************************99988888888877755.55566677777666664 PP
== domain 2 score: 85.3 bits; conditional E-value: 1.2e-26
TIGR02314 108 elentpkekikr.kvtellalvgls.dkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdv 203
e+ + k++ikr +++ll vgl ++ yp ++sggq+qr+ iaral +pk ++ de sald + i++ll + +++++lt ++i+h++ v
MMSYN1_0168 419 EISEIDKKDIKRfLINQLLETVGLLpEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSV 516
77778888998835899******86155577******************************************************************* PP
TIGR02314 204 vkricdevavidkgeliekgtvseifshpktelakkf 240
v+ d++avi +g+++e +e+f p + ++ +
MMSYN1_0168 517 VRFATDRIAVIYRGDIVELAESNELFDLPLHPYTRSL 553
**************************98876666554 PP
>> TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.4 0.1 2.4e-11 1.8e-09 1 71 [. 9 79 .. 9 103 .. 0.93
2 ! 71.6 0.0 2e-22 1.5e-20 110 217 .. 420 530 .. 414 534 .. 0.86
Alignments for each domain:
== domain 1 score: 35.4 bits; conditional E-value: 2.4e-11
TIGR02211 1 llkcenltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsk 71
+lk+++l ++ +g+++++ +kgv ++++kge+ ++vG+sGsGk+t+ + g++ ++G ++++ k l+
MMSYN1_0168 9 ILKVRDLLIEFGNGRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRG 79
789999999*******************************************************9998875 PP
== domain 2 score: 71.6 bits; conditional E-value: 2e-22
TIGR02211 110 iskkskkeaker.akellekvgl.ekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlela 205
is+ +kk+ k+ ++lle vgl ++++++p e+sGG+rqr+ iaral+ kPk v+adeP + ld + +i++ll +++k+ + +++ ++hdl+++
MMSYN1_0168 420 ISEIDKKDIKRFlINQLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVV 517
67788888877526789****9736899*******************************************************************999 PP
TIGR02211 206 kkl.drvlelkdg 217
+ + dr ++ g
MMSYN1_0168 518 RFAtDRIAVIYRG 530
8541455555555 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.1 0.1 5.2e-07 3.9e-05 12 85 .. 24 92 .. 9 155 .. 0.80
2 ? 0.8 0.2 0.8 61 14 84 .. 179 247 .. 171 249 .. 0.81
3 ? -1.1 0.0 3.1 2.3e+02 74 91 .. 353 370 .. 314 390 .. 0.71
4 ! 80.1 0.0 4.9e-25 3.7e-23 108 244 .. 420 555 .. 411 557 .. 0.91
Alignments for each domain:
== domain 1 score: 21.1 bits; conditional E-value: 5.2e-07
TIGR00972 12 gekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvG 85
++ +a+k v+++++k + +l+G sG+Gk+t+ r++ ++ +G++++e+k + k+ dv+++ +k+
MMSYN1_0168 24 NKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPIS-----DGAIYFENKLLRGKSPDVYKINQKIA 92
3467********************************9998877.....89999999999999999999999886 PP
== domain 2 score: 0.8 bits; conditional E-value: 0.8
TIGR00972 14 kealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkv 84
k+ lk + l+ k+ ++t i + + k l ++n+ +d v++ + kv ++ iy++ +++++r+ v
MMSYN1_0168 179 KRLLKIIRLQEKASRITKNISKHTSVKVELQDAINKYQDFVHDSIL--KVKDLENTIYNTLQEMLAIRNDV 247
55688899999999*************************9977655..46666777888877777777765 PP
== domain 3 score: -1.1 bits; conditional E-value: 3.1
TIGR00972 74 kldvvelrkkvGmvfqkp 91
k + +e +k + m+fq p
MMSYN1_0168 353 KKELKENKKDMQMIFQDP 370
344455566666666666 PP
== domain 4 score: 80.1 bits; conditional E-value: 4.9e-25
TIGR00972 108 lkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthnm 203
+++i +k+ + ++++ L+ ++l ++l++++ + sGGq+qr+ iaral ++P+ ++ DeP saLD ++i +l+++ +k+ +t + + h++
MMSYN1_0168 420 ISEIDKKDIKRFLINQLLETVGLL---PEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQfdLTYIFIAHDL 514
556666666666789999999998...679******************************************************9855699******* PP
TIGR00972 204 qqaarvsdktaffleGelveegeteqifekpkekktedyis 244
+ + +d++a++++G++ve +e++++f p + t++ +s
MMSYN1_0168 515 SVVRFATDRIAVIYRGDIVELAESNELFDLPLHPYTRSLLS 555
******************************99999887766 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.7 0.0 6.2e-07 4.7e-05 18 92 .. 34 109 .. 22 120 .. 0.84
2 ! 79.6 0.1 8.1e-25 6.2e-23 114 220 .. 435 542 .. 419 566 .. 0.87
Alignments for each domain:
== domain 1 score: 20.7 bits; conditional E-value: 6.2e-07
TIGR02142 18 lelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppek.RrvgyvFqeArLFpHlsv 92
+++ + +l G+sGsGkt++ r+i G++ ++g i+ ++++l + + +k r y+ q+ +L + ls
MMSYN1_0168 34 FDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPDVYKINQKiARHLYIMQQNQLTTSLSL 109
5555558899**********************************98888776555542567799999999888876 PP
== domain 2 score: 79.6 bits; conditional E-value: 8.1e-25
TIGR02142 114 kvielLgi.ehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrv 210
+++e +g+ + l+R+p++ sGG +qR++i+RAl+ +P+ ++ DeP++aLD + +++i+ L + ++++++ ++++H+l+ v +dr+ v+ G +
MMSYN1_0168 435 QLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFATDRIAVIYRGDI 532
44555554134589**********************************************************************************99 PP
TIGR02142 211 kaagkleevl 220
++ +e+
MMSYN1_0168 533 VELAESNELF 542
8888777765 PP
>> TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.2 0.0 3.7e-09 2.8e-07 2 80 .. 8 95 .. 7 105 .. 0.81
2 ! 70.4 0.0 4.9e-22 3.7e-20 138 238 .. 450 557 .. 429 558 .. 0.90
Alignments for each domain:
== domain 1 score: 28.2 bits; conditional E-value: 3.7e-09
TIGR02323 2 pllevselsksygsk....kgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyes...rsrelellalseaerrll 80
++l+v++l ++g++ k+++ v+f +y Ge +g+vGesGsGk+t+ a+ + ++G + +e+ r+++ +++++++ r+l
MMSYN1_0168 8 AILKVRDLLIEFGNGrnklKAVKgVTFdVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENkllRGKSPDVYKINQKIARHL 95
7899999988888752222567789*****************************99999******97444677888888887666655 PP
== domain 2 score: 70.4 bits; conditional E-value: 4.9e-22
TIGR02323 138 kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGltrvl...pkh 228
p++fsGG +qr+ iar+l+ +p++v+ ep l vs++a+++ ll ++ ++++l+ i ++h l+v+r+ ++r+ v+ +G +ve ++ l p h
MMSYN1_0168 450 YPHEFSGGQRQRIGIARALIMKPKFVVAdEPISALdVSIRAQIMnLLAKFQKQFDLTYIFIAHdLSVVRFATDRIAVIYRGDIVELAESNELfdlPLH 547
69*************************99***************9****************************************9988554477*** PP
TIGR02323 229 pytqllvssv 238
pyt+ l+s++
MMSYN1_0168 548 PYTRSLLSAI 557
******9987 PP
>> TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.4 0.0 5.6e-06 0.00043 25 68 .. 30 73 .. 11 101 .. 0.83
2 ! 78.7 0.0 1.3e-24 9.6e-23 113 242 .. 426 556 .. 419 566 .. 0.88
Alignments for each domain:
== domain 1 score: 17.4 bits; conditional E-value: 5.6e-06
TIGR03258 25 ddlsleieaGellallGksGsGkttllravaGfvkadGGrllva 68
+ +++++ Ge + l+G+sGsGktt+ ra+ G + G +
MMSYN1_0168 30 KGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFE 73
567789999***********************876666777655 PP
== domain 2 score: 78.7 bits; conditional E-value: 1.3e-24
TIGR03258 113 aliaer.vadalklvql.sdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvlad 208
+i++ + + l +v+l + +r+p+++sGGq+qr+ +aral+++p+ ++ dep+sald +ra++++ l+++ +++ +lt ++++hd + +d
MMSYN1_0168 426 KDIKRFlINQLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQF-DLTYIFIAHDLSVVRFATD 522
56665425678999996368889**********************************************999988776.8****************** PP
TIGR03258 209 killmkeGslialGetralydapadrfvaeylGa 242
+i ++ G +++l e+++l+d p + ++ l a
MMSYN1_0168 523 RIAVIYRGDIVELAESNELFDLPLHPYTRSLLSA 556
***********************98887766655 PP
>> TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.7 0.1 3e-10 2.3e-08 483 544 .. 17 78 .. 3 110 .. 0.89
2 ! 65.0 0.0 1.3e-20 9.6e-19 600 700 .. 438 543 .. 424 553 .. 0.86
Alignments for each domain:
== domain 1 score: 30.7 bits; conditional E-value: 3e-10
TIGR03796 483 vtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpre 544
++fg + + + ++++++++ +G+ lvG sGsGk ti++ + G+ ++G i+f++k ++
MMSYN1_0168 17 IEFGNGRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLR 78
78999999999*********************************************987665 PP
== domain 2 score: 65.0 bits; conditional E-value: 1.3e-20
TIGR03796 600 arpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl....rrRgctciivaHRLstiR.dcdeiivlerGkvver 692
++ g + ++l+ + +sGGqrqR+ iARaL+ +P ++ DE saLD + +i++ l ++ t i +aH Ls +R +d+i v+ rG +ve
MMSYN1_0168 438 ETVGLLPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLakfqKQFDLTYIFIAHDLSVVRfATDRIAVIYRGDIVEL 535
5566667778888899***************************************9988333345689*************557*************9 PP
TIGR03796 693 GtHeella 700
+ +el +
MMSYN1_0168 536 AESNELFD 543
99998876 PP
>> TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.2 0.5 1.2e-13 9e-12 276 343 .. 6 72 .. 2 75 .. 0.91
2 ? -3.0 0.8 6 4.6e+02 216 288 .. 163 232 .. 150 244 .. 0.56
3 ! 59.3 0.0 7.9e-19 6e-17 420 516 .. 446 542 .. 436 547 .. 0.96
Alignments for each domain:
== domain 1 score: 42.2 bits; conditional E-value: 1.2e-13
TIGR03269 276 gediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevev 343
+e i+kv+d+ ++ r +kav +v+++v+++e fGlvG sG+Gktt+ + ++G+ + ++G +++
MMSYN1_0168 6 NEAILKVRDLLIEFG-NGRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYF 72
678999999998875.58999******************************************99876 PP
== domain 2 score: -3.0 bits; conditional E-value: 6
TIGR03269 216 keedislvltshwpeviedlsdkaillekGeiveeGepeevvakflesvsevekekevevgediikvkdvskr 288
k+ ++s+v+ + ++ ++ l + i l++ + + + ++ ++ +e ++++k +++ v++ i+kvkd++
MMSYN1_0168 163 KNANLSIVIQA-ITDNLKRLLK-IIRLQEKASRITKNISKHTSVKVELQDAINKYQDF-VHDSILKVKDLENT 232
55566665544.3444444443.34444333333334444445556666667776665.56778888887765 PP
== domain 3 score: 59.3 bits; conditional E-value: 7.9e-19
TIGR03269 420 ildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeiv 516
l ++p+e+s G+r r+ +a+ li +p+ v+ dep ++d + ++ + + k +++++ t++ ++hd+ v+ dr+a++ G iv++ +++e+
MMSYN1_0168 446 HLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFATDRIAVIYRGDIVELAESNELF 542
589***************************************************************************************9998875 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.7 0.0 6.4e-10 4.9e-08 13 92 .. 26 109 .. 10 117 .. 0.81
2 ! 64.4 0.1 3.2e-20 2.5e-18 105 218 .. 425 540 .. 405 547 .. 0.90
Alignments for each domain:
== domain 1 score: 30.7 bits; conditional E-value: 6.4e-10
TIGR03410 13 sevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpe.ervkaGia...yvpqGreifpkltv 92
+++++v+++v kge+ ++G g Gktt+ +a++g++++++G+i +e++ ++ ++p ++++ ia y+ q ++ ++l+
MMSYN1_0168 26 LKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPDvYKINQKIArhlYIMQQNQLTTSLSL 109
46899*********************************************9998877526777777766677777777777765 PP
== domain 2 score: 64.4 bits; conditional E-value: 3.2e-20
TIGR03410 105 kk..ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfalelad 200
kk ++ ++++++e +l e l+R + sGGq+q + iaRaL+++Pk+++ DeP + si ++i + + + +k+ dl+ + + + l+ ++ ++d
MMSYN1_0168 425 KKdiKRFLINQLLETVGLLPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFATD 522
333478889999************************************************************************************** PP
TIGR03410 201 rylvlerGevvaegekee 218
r++v+ rG++v+ e++e
MMSYN1_0168 523 RIAVIYRGDIVELAESNE 540
***********9877665 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.9 0.1 4.4e-08 3.3e-06 13 82 .. 24 92 .. 9 112 .. 0.77
2 ? 1.1 0.1 0.8 61 112 151 .. 172 211 .. 156 219 .. 0.83
3 ? -2.0 0.0 7.5 5.7e+02 70 97 .. 352 380 .. 343 384 .. 0.70
4 ! 69.0 0.0 1.4e-21 1.1e-19 105 212 .. 419 529 .. 414 531 .. 0.87
Alignments for each domain:
== domain 1 score: 24.9 bits; conditional E-value: 4.4e-08
TIGR02673 13 agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkig 82
++ +a+k v++ + kge l+G+sG+Gktt+ + ++g++ s G++ ++++ + r ++ ++ ++ +ki+
MMSYN1_0168 24 NKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLL-RGKSPDVYKINQKIA 92
467888999**************************************9987654.555556666666654 PP
== domain 2 score: 1.1 bits; conditional E-value: 0.8
TIGR02673 112 eeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRa 151
++i+ + +++l+ + l++ka+ +++++s+ +v + a
MMSYN1_0168 172 QAITDNLKRLLKIIRLQEKASRITKNISKHTSVKVELQDA 211
567888999*****************99987777766655 PP
== domain 3 score: -2.0 bits; conditional E-value: 7.5
TIGR02673 70 rerelpllRrkigvvfqDfk.llkdrtvl 97
+++el ++ + ++fqD l++r ++
MMSYN1_0168 352 NKKELKENKKDMQMIFQDPSsSLNERMAV 380
67788888999******953145555555 PP
== domain 4 score: 69.0 bits; conditional E-value: 1.4e-21
TIGR02673 105 evrgkkeeeiqk.rveevlelvgle.dkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkr.Gttvivathdeel 199
e++ ++++i++ ++++le+vgl ++ + +p+e+sgG +qR++iaRa++ kP+ ++aDeP lD + ++i++ll +++k+ +t i+ +hd ++
MMSYN1_0168 419 EISEIDKKDIKRfLINQLLETVGLLpEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQfDLTYIFIAHDLSV 516
56677777777735899******85267799*************************************************9876479*********** PP
TIGR02673 200 vervkkrvlelek 212
v+ + r+ + +
MMSYN1_0168 517 VRFATDRIAVIYR 529
*999998877655 PP
>> TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.4 0.0 4.8e-08 3.7e-06 4 44 .. 24 64 .. 21 108 .. 0.85
2 ? 2.4 0.1 0.24 18 101 138 .. 174 211 .. 134 240 .. 0.84
3 ! 67.4 0.0 4e-21 3e-19 98 213 .. 426 543 .. 417 620 .. 0.86
Alignments for each domain:
== domain 1 score: 24.4 bits; conditional E-value: 4.8e-08
TIGR01188 4 gefkAvdgvnlkveegevfglLGPnGAGKtttikmLttllk 44
+++kAv+gv+++v++ge fgl+G G GKtt+ + + ++ +
MMSYN1_0168 24 NKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQP 64
589****************************9877766655 PP
== domain 2 score: 2.4 bits; conditional E-value: 0.24
TIGR01188 101 aeeraeellelvelkeaadkkvktysgGmrrrlelaas 138
+ + ++ll+++ l+e+a + k+ s+ ++el +
MMSYN1_0168 174 ITDNLKRLLKIIRLQEKASRITKNISKHTSVKVELQDA 211
45567889999999999999999999988888887655 PP
== domain 3 score: 67.4 bits; conditional E-value: 4e-21
TIGR01188 98 kkeaeeraeellelvelk.eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladr 193
k++++ +++lle+v l e ++ +++sgG+r+r+ +a++li +P+ + DEP + LD+ r++i +l+++++k+ + t + +h+l + +dr
MMSYN1_0168 426 KDIKRFLINQLLETVGLLpEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQfDLTYIFIAHDLSVVRFATDR 523
566777899******98637789999************************************************************************ PP
TIGR01188 194 vaiidkGkiiaedtpeeLKe 213
+a+i +G i+ +eL +
MMSYN1_0168 524 IAVIYRGDIVELAESNELFD 543
**********9999998865 PP
>> TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.2 0.1 3.3e-11 2.5e-09 325 380 .. 20 75 .. 4 92 .. 0.84
2 ! 54.4 0.1 2.5e-17 1.9e-15 454 539 .. 453 540 .. 445 543 .. 0.90
Alignments for each domain:
== domain 1 score: 34.2 bits; conditional E-value: 3.3e-11
TIGR01842 325 vppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDga 380
+ ++k k +kg++f + +Ge+ +++G sgsGk+++ r ++G+++ + G + ++
MMSYN1_0168 20 GNGRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENK 75
445566689****************************************9988765 PP
== domain 2 score: 54.4 bits; conditional E-value: 2.5e-17
TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkar.kitvvvithrpsllelv.dkilvlkdGalkafGeree 539
+ sgGqrqRi++aRal +Pk+vv DeP + LD + + +++ l + +++ t ++i+h s+++ + d+i+v+ G + ++ e +e
MMSYN1_0168 453 EFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQfDLTYIFIAHDLSVVRFAtDRIAVIYRGDIVELAESNE 540
68********************************************998846899**********96449********9998887766 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.0 0.3 1.3e-10 9.6e-09 475 543 .. 21 91 .. 3 110 .. 0.76
2 ! 55.4 0.0 1.1e-17 8e-16 603 681 .. 453 534 .. 445 543 .. 0.93
Alignments for each domain:
== domain 1 score: 32.0 bits; conditional E-value: 1.3e-10
TIGR03375 475 YpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdir..qidpadlrrni 543
++ +a+k v++++ Ge +++G+ GsGK+t+ + ++g+ ++G++++++ +r d+ ++ ++i
MMSYN1_0168 21 NGRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRgkSPDVYKINQKI 91
4456779********************************************99865541134445555555 PP
== domain 2 score: 55.4 bits; conditional E-value: 1.1e-17
TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelv.driivldkGriva 681
++SgGQrq +++aRal+++p+ ++ DEP salD s +++++ L+++ + d T + ++H s+++ + dri v+ +G iv
MMSYN1_0168 453 EFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKqfDLTYIFIAHDLSVVRFAtDRIAVIYRGDIVE 534
79*********************************************998999*************8549**********95 PP
>> TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.1 0.1 7.2e-08 5.4e-06 458 519 .. 18 79 .. 10 111 .. 0.76
2 ! 62.8 0.0 7.2e-20 5.5e-18 588 672 .. 453 542 .. 446 545 .. 0.88
Alignments for each domain:
== domain 1 score: 23.1 bits; conditional E-value: 7.2e-08
TIGR03797 458 tFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlek 519
+F ++ + ++ v++ + +Ge ++vG+SGsGK t+ r ++g + + G+++++ + l++
MMSYN1_0168 18 EFGNGRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRG 79
55666677788999********************************99*******9887753 PP
== domain 2 score: 62.8 bits; conditional E-value: 7.2e-20
TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklk....vtRiviAHRLSTirna.drilvleeGrvveqGsyeeLl 672
SGGQrQR+ iAral+ kP+ ++ DE SALD a +++ l+k++ t i iAH LS +r a dri v+ G +ve + +eL
MMSYN1_0168 453 EFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQkqfdLTYIFIAHDLSVVRFAtDRIAVIYRGDIVELAESNELF 542
68***************************************999865422228************96559************98888875 PP
>> TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.7 0.0 4e-07 3e-05 2 64 .. 30 92 .. 29 124 .. 0.87
2 ! 61.3 0.0 3e-19 2.2e-17 86 197 .. 424 536 .. 405 558 .. 0.87
Alignments for each domain:
== domain 1 score: 21.7 bits; conditional E-value: 4e-07
TIGR01184 2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnys 64
k+v +++ kge l+g sg gk+t+ i g++ ++ga+++e k + pd + q +
MMSYN1_0168 30 KGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPDVYKINQKIA 92
78999*******************************************999999887777655 PP
== domain 2 score: 61.3 bits; conditional E-value: 3e-19
TIGR01184 86 lskserreiveehielvglr.eaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeallls 182
+k+ +r ++++ +e vgl e ++p+++sgg +qr+ iaral ++pk ++ dep+ ald r ++ + l k ++ ++t ++++hd+ + +
MMSYN1_0168 424 DKKDIKRFLINQLLETVGLLpEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFAT 521
456778999*********75277899************************************************************************ PP
TIGR01184 183 drvvmltngpaakig 197
dr+ ++ g ++
MMSYN1_0168 522 DRIAVIYRGDIVELA 536
****99999765554 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.6 0.2 1.1e-08 8.3e-07 12 87 .. 27 103 .. 15 114 .. 0.75
2 ? -2.5 0.8 9 6.9e+02 91 131 .. 172 194 .. 150 216 .. 0.48
3 ? 0.3 0.6 1.3 98 88 129 .. 280 321 .. 235 329 .. 0.80
4 ? -0.6 0.4 2.4 1.9e+02 66 103 .. 351 390 .. 328 428 .. 0.52
5 ! 64.5 0.0 2.8e-20 2.1e-18 107 202 .. 424 522 .. 414 526 .. 0.86
Alignments for each domain:
== domain 1 score: 26.6 bits; conditional E-value: 1.1e-08
TIGR03608 12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllre..klgylFqnfaL 87
+ +k + +++ kGe+ +vGesGsGK+t+ + ++ ++g +++e+k + ks k+ ++ + y+ q+ +L
MMSYN1_0168 27 KAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKL-LRGKSPDVYKINQKiaRHLYIMQQNQL 103
5678999**************************9************9997.333444444443331122355565555 PP
== domain 2 score: -2.5 bits; conditional E-value: 9
TIGR03608 91 etveenlelalklkkkskkekekkkkevlekvglekklkkk 131
+++++nl+ lk+ + l++k ++
MMSYN1_0168 172 QAITDNLKRLLKIIR------------------LQEKASRI 194
333344433333333..................33333333 PP
== domain 3 score: 0.3 bits; conditional E-value: 1.3
TIGR03608 88 lenetveenlelalklkkkskkekekkkkevlekvglekklk 129
le+ + ++ ++lal+ k +++ kk+k+ +e ++l++k+k
MMSYN1_0168 280 LEDASHDQLMNLALTCPKYKNNYYLKKLKQRIEYLNLNNKTK 321
67777788899999999999999999999****999987765 PP
== domain 4 score: -0.6 bits; conditional E-value: 2.4
TIGR03608 66 kskkaskllreklgylFqn..faLlenetveenlelalkl 103
+kk+ k ++++ +Fq+ +L e +vee ++ +l +
MMSYN1_0168 351 PNKKELKENKKDMQMIFQDpsSSLNERMAVEEIIKEGLDN 390
2333344445567777776333566666666666666654 PP
== domain 5 score: 64.5 bits; conditional E-value: 2.8e-20
TIGR03608 107 skke.kekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkee.gktiiivtHdpevaekad 201
kk+ k+ +++++le+vgl ++l+++ +e+sgG++qR+ +ar+l+ +++ ++ADEP ++LD r+++++ll + +++ + t i++ Hd +v + a
MMSYN1_0168 424 DKKDiKRFLINQLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQfDLTYIFIAHDLSVVRFAT 521
4444156678899*****9999*****************************************************998846789*******9987665 PP
TIGR03608 202 r 202
MMSYN1_0168 522 D 522
4 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.1 0.1 1.6e-05 0.0012 466 506 .. 22 62 .. 10 112 .. 0.82
2 ! 65.1 0.0 1.3e-20 9.5e-19 593 679 .. 453 542 .. 444 551 .. 0.91
Alignments for each domain:
== domain 1 score: 15.1 bits; conditional E-value: 1.6e-05
TIGR01846 466 kedspevlsnlsldikaGeviGivGpsGsGkstltkllqrl 506
+++ + ++ +++d+ +Ge+ G+vG+sGsGk+t+ + + +
MMSYN1_0168 22 GRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGI 62
55666778999***********************9987655 PP
== domain 2 score: 65.1 bits; conditional E-value: 1.3e-20
TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickg..rtviiiahrlstvr.aadrilvlekGkivesGkheell 679
++sGGqrqri +aral+ +P+ ++ de sald a im+ l + k t i iah ls vr a+dri v+ +G ive + +el+
MMSYN1_0168 453 EFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQfdLTYIFIAHDLSVVRfATDRIAVIYRGDIVELAESNELF 542
68********************************************999632699***********5569************99999986 PP
>> TIGR00958 3a01208: antigen peptide transporter 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.7 0.1 1.1e-05 0.00081 491 524 .. 23 56 .. 16 78 .. 0.89
2 ! 63.4 0.0 3.9e-20 3e-18 618 701 .. 454 542 .. 449 549 .. 0.93
Alignments for each domain:
== domain 1 score: 15.7 bits; conditional E-value: 1.1e-05
TIGR00958 491 rpdkpvlkdLtftlepGevvalVGPsGsGKStva 524
r + + +k+ tf + Ge+ lVG sGsGK t+
MMSYN1_0168 23 RNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIG 56
5667789*************************95 PP
== domain 2 score: 63.4 bits; conditional E-value: 3.9e-20
TIGR00958 618 lsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLstveka.dkilvlkkgsvvelGthkqLm 701
sgGq+qri iARAL+ kP ++ De SALD+ ++ +ll + +++ + t + iah Ls+v+ a d+i+v+ +g +vel + ++L
MMSYN1_0168 454 FSGGQRQRIGIARALIMKPKFVVADEPISALDVsiraQIMNLLAKFQKQFDLTYIFIAHDLSVVRFAtDRIAVIYRGDIVELAESNELF 542
79*******************************998899999999********************76489***********99999886 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 0.0 6.8e-05 0.0052 19 67 .. 34 82 .. 25 111 .. 0.86
2 ! 65.4 0.0 1.7e-20 1.3e-18 109 210 .. 433 535 .. 423 538 .. 0.92
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 6.8e-05
TIGR01277 19 lsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsap 67
+ v +Ge ++GesG+Gk+t+ i G +G+i ++k + +p
MMSYN1_0168 34 FDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSP 82
56899***********************999899***999987777666 PP
== domain 2 score: 65.4 bits; conditional E-value: 1.7e-20
TIGR01277 109 vedvarqvGi.adylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedG 205
++++ + vG+ ++l r p+e+sGGqrqr+ +ar l+ + ++ dep sald +r +++ l++k ++ +lt ++++h+ls ++ ++++v+ G
MMSYN1_0168 433 INQLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFATDRIAVIYRG 530
56777788853699***********************999999******************************************************* PP
TIGR01277 206 kikvl 210
i l
MMSYN1_0168 531 DIVEL 535
99765 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.4 0.0 1.5e-10 1.1e-08 321 408 .. 9 104 .. 2 111 .. 0.80
2 ! 47.2 0.0 5.1e-15 3.8e-13 448 523 .. 443 520 .. 420 527 .. 0.83
Alignments for each domain:
== domain 1 score: 32.4 bits; conditional E-value: 1.5e-10
TIGR02857 321 slelenvsvay.egrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldad..swrkqia...wvpQkPllf 408
l+++++ + + +gr+ +a+k+v ++v ge+ +lvG+SG+GK+t+ +++ g+ + +Gai +++ l+ ++d + +++ia ++ Q+ +l+
MMSYN1_0168 9 ILKVRDLLIEFgNGRNklKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPDvyKINQKIArhlYIMQQNQLT 104
5778888888878887789*********************************************99988888777333334444333777777665 PP
== domain 2 score: 47.2 bits; conditional E-value: 5.1e-15
TIGR02857 448 leteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaeg..rtvllvaHrlalaela 523
l ++ + +++ SgGqrqR+++Aral+ + + ++ DEP ++LD + a++++ l+++ ++ t +++aH+l++++ a
MMSYN1_0168 443 LPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQfdLTYIFIAHDLSVVRFA 520
45667788999*********************************************996522699*******998765 PP
>> TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.1 0.2 1.7e-08 1.3e-06 330 397 .. 8 77 .. 2 103 .. 0.83
2 ! 52.2 0.0 1.1e-16 8.3e-15 469 557 .. 452 543 .. 418 548 .. 0.89
Alignments for each domain:
== domain 1 score: 25.1 bits; conditional E-value: 1.7e-08
TIGR02203 330 Gkvefrnvtfrypg..ddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdl 397
+++r++ +++++ ++ +a++++ ++v +Ge+ lvG sGsGk+t+ + + +++G i ++++ l
MMSYN1_0168 8 AILKVRDLLIEFGNgrNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLL 77
55677877777754226789****************************9999999999999998887655 PP
== domain 2 score: 52.2 bits; conditional E-value: 1.1e-16
TIGR02203 469 skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk..gRttlviahRLstieka.DrivvlddGkiverGtheeLla 557
+ sGGqRqR+ iaRal+ ++ De saLD ++ + L +++k + t + iah Ls ++ a Dri v+ G ive +eL++
MMSYN1_0168 452 HEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKqfDLTYIFIAHDLSVVRFAtDRIAVIYRGDIVELAESNELFD 543
578*********************************************98334799**********9766*************999999875 PP
>> TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.5 0.2 7.3e-06 0.00055 472 539 .. 8 78 .. 2 108 .. 0.80
2 ! 59.3 0.0 7.9e-19 6e-17 582 697 .. 415 543 .. 406 554 .. 0.83
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 7.3e-06
TIGR01193 472 gdievndvsysyGygsevl...edislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslk 539
+ ++v d+ ++G g++ l + +++++ k e+ lvG sGsGk+t+ + +++ ++G i +++k l+
MMSYN1_0168 8 AILKVRDLLIEFGNGRNKLkavKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLR 78
557788888888888876511156789***************************99999999999888775 PP
== domain 2 score: 59.3 bits; conditional E-value: 7.9e-19
TIGR01193 582 kkaveiaei.kddiekl..plGyqt......elseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklk...dktiifvah 667
+k+vei+ei k+di+++ ++ ++t +ls + sgGq+qr+ +aral+ + k ++ de s ld+ + +i++ l k++ d t if+ah
MMSYN1_0168 415 NKIVEISEIdKKDIKRFliNQLLETvgllpeHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQkqfDLTYIFIAH 512
57789999944689886333334433222237999999*****************************************9999998333569****** PP
TIGR01193 668 rlsvak.ksdkiivldeGkiieqGshkellk 697
lsv + +d+i v+ +G i+e + +el++
MMSYN1_0168 513 DLSVVRfATDRIAVIYRGDIVELAESNELFD 543
***987479*************999999875 PP
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.6 0.0 1.8e-06 0.00014 350 411 .. 23 84 .. 3 110 .. 0.81
2 ! 53.6 0.0 4.7e-17 3.6e-15 476 562 .. 453 542 .. 443 547 .. 0.90
Alignments for each domain:
== domain 1 score: 18.6 bits; conditional E-value: 1.8e-06
TIGR02204 350 rpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpee 411
r + ka++g+ + v +Get lvG sG+Gk+t+ + ++ ++Gai ++ lr +p++
MMSYN1_0168 23 RNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPDV 84
77889****************************99998887778888888877777777765 PP
== domain 2 score: 53.6 bits; conditional E-value: 4.7e-17
TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk..grttlviahrLatvlka.drivvldkGriveqGthaeLi 562
++sGGq+qri iara++ + + ++ de saLd ++ + l++ k + t + iah L+ v+ a dri+v+ +G ive + +eL+
MMSYN1_0168 453 EFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKqfDLTYIFIAHDLSVVRFAtDRIAVIYRGDIVELAESNELF 542
68******************************************999873357999*********8544*************99999987 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.2 0.0 5.2e-07 3.9e-05 4 71 .. 25 92 .. 23 112 .. 0.83
2 ? 5.2 0.0 0.041 3.1 59 84 .. 352 377 .. 346 426 .. 0.80
3 ! 43.6 0.0 6.8e-14 5.1e-12 108 188 .. 433 515 .. 422 517 .. 0.85
Alignments for each domain:
== domain 1 score: 21.2 bits; conditional E-value: 5.2e-07
TIGR01166 4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkva 71
+ +++kg+ ++v +ge+ +l+G+ G+Gk+t+ + + G+ G++ ++ + l + ++ ++ +k+a
MMSYN1_0168 25 KLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPDVYKINQKIA 92
67899********************************9888899999998888777777777777665 PP
== domain 2 score: 5.2 bits; conditional E-value: 0.041
TIGR01166 59 srkgllelrkkvalvlqdpddqlfaa 84
++k+l e +k +++++qdp l
MMSYN1_0168 352 NKKELKENKKDMQMIFQDPSSSLNER 377
699****************9988654 PP
== domain 3 score: 43.6 bits; conditional E-value: 6.8e-14
TIGR01166 108 vrealaavdis.gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklree.Gktvvisthdvd 188
+++ l++v++ + +r h +sgG+++r+ ia a++++p++++ deP + ld + + q++++l k++++ t ++ +hd+
MMSYN1_0168 433 INQLLETVGLLpEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQfDLTYIFIAHDLS 515
556677787642677899*************************************************9883568899999976 PP
>> TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.7 0.1 4.7e-09 3.6e-07 12 65 .. 24 77 .. 9 115 .. 0.82
2 ! 43.6 0.1 6.2e-14 4.8e-12 100 222 .. 417 541 .. 405 546 .. 0.81
Alignments for each domain:
== domain 1 score: 27.7 bits; conditional E-value: 4.7e-09
TIGR04406 12 kkrkvvkdvslevksgeivGllGPnGaGkttsfymivGlvkadaGkvllddedi 65
+k k vk+v+++v +ge Gl+G G+Gktt i+G+ +G + ++++ +
MMSYN1_0168 24 NKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLL 77
45689*******************************************999766 PP
== domain 2 score: 43.6 bits; conditional E-value: 6.2e-14
TIGR04406 100 vlelredldkee.reekleelleeleia.hlrekkaaslsGGerrrveiaralaaePkfilldePfagvdPiavsdikklik.llkergiGvlitdhn 194
++e++e +dk++ ++ +++lle + + + ++ ++sGG+r+r+ iaral+++Pkf++ deP++++d +i +l+ + k+ ++ + h+
MMSYN1_0168 417 IVEISE-IDKKDiKRFLINQLLETVGLLpEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAkFQKQFDLTYIFIAHD 513
667666.4555505567899***999862444667899********************************7666778777651567889*999999** PP
TIGR04406 195 vretldivdrayivseGkvlaeGsaeei 222
+ +dr +++ G +++ +++e+
MMSYN1_0168 514 LSVVRFATDRIAVIYRGDIVELAESNEL 541
*999999************998888776 PP
>> TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.1 0.1 7.7e-08 5.8e-06 12 64 .. 25 77 .. 10 103 .. 0.86
2 ? -0.9 0.7 3.5 2.6e+02 57 117 .. 169 232 .. 151 276 .. 0.65
3 ! 53.8 0.1 6.5e-17 4.9e-15 98 204 .. 426 534 .. 409 545 .. 0.87
Alignments for each domain:
== domain 1 score: 24.1 bits; conditional E-value: 7.7e-08
TIGR03740 12 kqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrew 64
k ++v+ v++ v k + +gl+G G+Gk+t+ + + G+ + G i+++++ +
MMSYN1_0168 25 KLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLL 77
45799********************************************9865 PP
== domain 2 score: -0.9 bits; conditional E-value: 3.5
TIGR03740 57 illdgrewtrkdlkkiGsliesP.alyenltarenlkvrtl..llglpesrieevlkivdlent 117
i++++ + + k l ki l e+ + +n++ + +kv+ + + + ++ +++lk+ dlent
MMSYN1_0168 169 IVIQAITDNLKRLLKIIRLQEKAsRITKNISKHTSVKVELQdaINKYQDFVHDSILKVKDLENT 232
4555555555555555555554314566666666666654311344445555666666666665 PP
== domain 3 score: 53.8 bits; conditional E-value: 6.5e-17
TIGR03740 98 lglpesrieevlkivdle.ntekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpek.Gitvilsshilsevelladh 193
+++++ i+++l++v+l + + ++fs G +qr+Gia al+ kPk+++ deP ld ++ +l+ f+++ +t i+ +h ls v+ +d
MMSYN1_0168 426 KDIKRFLINQLLETVGLLpEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQfDLTYIFIAHDLSVVRFATDR 523
45677789********86155577889*********************************98888999******998579****************** PP
TIGR03740 194 iGiiseGklky 204
i +i+ G +
MMSYN1_0168 524 IAVIYRGDIVE 534
*******9865 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.7 0.0 8.7e-07 6.6e-05 2 44 .. 35 77 .. 34 97 .. 0.84
2 ! 47.8 0.0 4.4e-15 3.4e-13 96 201 .. 435 543 .. 423 563 .. 0.81
Alignments for each domain:
== domain 1 score: 20.7 bits; conditional E-value: 8.7e-07
TIGR03771 2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkss 44
+v kGe gl+G G+Gktt+ rai+g+ + + G + + k
MMSYN1_0168 35 DVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLL 77
6789********************************9887744 PP
== domain 2 score: 47.8 bits; conditional E-value: 4.4e-15
TIGR03771 96 dalervkl.teladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelage.gtailmtthdlaeavatcdrvvll.ngrv 190
+ le+v l e +r e+sGGqrqr+ +aral +kp+ ++ dep + ld+ + ++++l+ ++ ++ + + + +hdl+ ++dr+ ++ g +
MMSYN1_0168 435 QLLETVGLlPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQfDLTYIFIAHDLSVVRFATDRIAVIyRGDI 532
5677776533444555689********************************************99866378999*********99****965516788 PP
TIGR03771 191 vadgapdqlqd 201
v + ++l d
MMSYN1_0168 533 VELAESNELFD 543
87777777766 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.1 0.0 1.8e-08 1.4e-06 2 70 .. 9 81 .. 8 135 .. 0.83
2 ? -0.0 0.2 1.7 1.3e+02 117 146 .. 171 200 .. 144 213 .. 0.76
3 ! 42.0 0.0 2.6e-13 2e-11 115 221 .. 424 533 .. 367 541 .. 0.83
Alignments for each domain:
== domain 1 score: 26.1 bits; conditional E-value: 1.8e-08
TIGR03411 2 iLevedvsvsfdg....fkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklk 70
iL+v+d+ ++f+ +ka++ ++++v +ge ++G G+Gktt+ +i+G ++G ++f++k l++++
MMSYN1_0168 9 ILKVRDLLIEFGNgrnkLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKS 81
7999999999964344499**********************************************99877654 PP
== domain 2 score: -0.0 bits; conditional E-value: 1.7
TIGR03411 117 skeekerieevleligLeekadkkaglLsh 146
++ +++++++l++i+L+eka++ + ++s
MMSYN1_0168 171 IQAITDNLKRLLKIIRLQEKASRITKNISK 200
456788999999*******99999998885 PP
== domain 3 score: 42.0 bits; conditional E-value: 2.6e-13
TIGR03411 115 rlskeekerieevleligLe.ekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelaker..svvvvehDmefvrela 209
++ ++ i+++le++gL e+ ++ + s Gq+q++ i+ l+ +pk+++ DeP++ + + ++++ +ll + +k+ + + + hD++ vr +
MMSYN1_0168 424 DKKDIKRFLINQLLETVGLLpEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFdlTYIFIAHDLSVVRFAT 521
44445566799******98626778999*************************************************985227799************ PP
TIGR03411 210 ekvtvlheGkvl 221
++++v+ +G+++
MMSYN1_0168 522 DRIAVIYRGDIV 533
*********986 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.8 0.0 1.2e-06 9.2e-05 14 69 .. 26 81 .. 16 113 .. 0.76
2 ! 47.3 0.0 4.7e-15 3.5e-13 132 218 .. 448 535 .. 426 543 .. 0.85
Alignments for each domain:
== domain 1 score: 19.8 bits; conditional E-value: 1.2e-06
TIGR03873 14 rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkals 69
v++v+ ++ +G+ gl+G GsGk+t+ r + G+ ++G++ ++ + l++ s
MMSYN1_0168 26 LKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKS 81
56799****************************************88776665543 PP
== domain 2 score: 47.3 bits; conditional E-value: 4.7e-15
TIGR03873 132 drdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaa 218
+r + +sGG+rqr+ +aral +Pk+++ deP ldvs + ++++l+ + + t + hdl+ ++d++ v+ G +v
MMSYN1_0168 448 SRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQkQFDLTYIFIAHDLSVVRFATDRIAVIYRGDIVEL 535
5677789*******************************99888888888876514578999999*******************99865 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.4 0.0 8e-09 6.1e-07 332 396 .. 7 74 .. 2 100 .. 0.83
2 ! 39.2 0.0 1e-12 7.7e-11 470 530 .] 452 514 .. 434 514 .. 0.88
Alignments for each domain:
== domain 1 score: 26.4 bits; conditional E-value: 8e-09
TIGR02868 332 kptlelrdlsvsypgaee...vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldg 396
++ l++rdl +++ ++ + ++kgv++d+ +Ge +vG sG+GK+t+ +++g+ + ++G + ++
MMSYN1_0168 7 EAILKVRDLLIEFGNGRNklkAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFEN 74
56688888887776544324799**************************************9997665 PP
== domain 2 score: 39.2 bits; conditional E-value: 1e-12
TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthrl 530
+ +SGG+rqR+ +ARaL+ + + ++ DEP LD+ ++++++ L+ + + + t ++++h+l
MMSYN1_0168 452 HEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAkfQKQFDLTYIFIAHDL 514
679******************************************944555567799999986 PP
>> TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.3 0.0 5.8e-08 4.4e-06 4 67 .. 12 72 .. 9 95 .. 0.80
2 ! 38.8 0.0 2.1e-12 1.6e-10 138 217 .. 443 522 .. 423 527 .. 0.81
Alignments for each domain:
== domain 1 score: 24.3 bits; conditional E-value: 5.8e-08
TIGR02324 4 vedlsktfilhqqgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilv 67
v+dl +f + ++ kl+++k v+++v +Ge l G+sG+Gk t+ +++ + ++ g i
MMSYN1_0168 12 VRDLLIEFGNGRN---KLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYF 72
5555555555554...79********************************98877777676655 PP
== domain 2 score: 38.8 bits; conditional E-value: 2.1e-12
TIGR02324 138 iperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikea.kargaaligifhdeevrelvad 217
+pe+L ++ fsGG +qR+ iarali++ ++ deP ++Ld + r+ +++l+++ k+ + i i hd +v + ++d
MMSYN1_0168 443 LPEHLSRYP-HEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFqKQFDLTYIFIAHDLSVVRFATD 522
588888886.99*****************5556678*******************996155689999999*9888776665 PP
>> TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.4 0.0 7.2e-09 5.5e-07 12 70 .. 24 80 .. 9 115 .. 0.79
2 ! 35.2 0.0 1.5e-11 1.2e-09 121 222 .. 433 535 .. 415 543 .. 0.84
Alignments for each domain:
== domain 1 score: 26.4 bits; conditional E-value: 7.2e-09
TIGR02633 12 ggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkas 70
+++ka++++++ + Ge +l Ge G+Gk+t+ + + g+ p dG i+fe++ l+ +
MMSYN1_0168 24 NKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPIS--DGAIYFENKLLRGK 80
3589*************************************86..7******9988765 PP
== domain 2 score: 35.2 bits; conditional E-value: 1.5e-11
TIGR02633 121 akellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdl.kakgvacvyishkleevkavsdtisvirdG 217
++ll+ + l + +r ++ +Gq+q + ia+al + ++++ dep ++l + +++++ + k+ +++ ++i+h l v+ +d+i+vi G
MMSYN1_0168 433 INQLLETVGLLPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFqKQFDLTYIFIAHDLSVVRFATDRIAVIYRG 530
56788888888888899999999****************************999988888888776615569999*******************9999 PP
TIGR02633 218 qhvat 222
+ v
MMSYN1_0168 531 DIVEL 535
87765 PP
>> TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.4 0.1 3.6e-06 0.00028 14 70 .. 25 81 .. 9 138 .. 0.69
2 ? -1.4 0.7 4 3e+02 132 236 .. 196 212 .. 142 286 .. 0.55
3 ! 47.6 0.0 4.6e-15 3.5e-13 109 215 .. 428 537 .. 400 553 .. 0.87
Alignments for each domain:
== domain 1 score: 18.4 bits; conditional E-value: 3.6e-06
TIGR03522 14 kqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlkns 70
k ka++ v+f++ kGe G++G G+Gk+t+ + + g + + G++ +++ +s
MMSYN1_0168 25 KLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKS 81
4589*********************************99999999987765433333 PP
== domain 2 score: -1.4 bits; conditional E-value: 4
TIGR03522 132 galskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelkaaekkkvie 229
++ k++ ++
MMSYN1_0168 196 KNI----------------------------------------------------------------------------------------SKHTSVK 205
112........................................................................................2222222 PP
TIGR03522 230 vefeeei 236
ve++ +i
MMSYN1_0168 206 VELQDAI 212
2222222 PP
== domain 3 score: 47.6 bits; conditional E-value: 4.6e-15
TIGR03522 109 klkkrveelielvGlkaeqhkki.galskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiak..dktvilsthimqevealcdrvi 203
++ +++l+e vGl +e+ + ++s G rqr+G+a+al+ +Pk ++ deP + ld +i +++++ k d t i+ +h + v+ dr+
MMSYN1_0168 428 IKRFLINQLLETVGLLPEHLSRYpHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKqfDLTYIFIAHDLSVVRFATDRIA 525
3344699***********98876379**********************************999******9998855789******************* PP
TIGR03522 204 iinkGkivadkk 215
+i +G iv +
MMSYN1_0168 526 VIYRGDIVELAE 537
*******96554 PP
>> TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.5 0.0 2.8e-05 0.0022 2 62 .. 10 74 .. 9 113 .. 0.73
2 ! 45.6 0.0 1.7e-14 1.3e-12 113 219 .. 433 541 .. 423 545 .. 0.89
Alignments for each domain:
== domain 1 score: 15.5 bits; conditional E-value: 2.8e-05
TIGR03864 2 leveglsfayg....krralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaG 62
l+v++l ++g k +a+++v+++v kge L+G G+Gk+t+ + ++ ++g i
MMSYN1_0168 10 LKVRDLLIEFGngrnKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFEN 74
66777777777222235799**************************9999999988888886554 PP
== domain 2 score: 45.6 bits; conditional E-value: 1.7e-14
TIGR03864 113 ieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeve.aedrlvvlhkG 208
i+++l+ +gl + ++ +e +GG+r+r+ iaral+ +Pk ++ De+ LD++ ra++++ + + ++ +l+ ++ h + v+ a+dr+ v+ +G
MMSYN1_0168 433 INQLLETVGLLPEHLSRyPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRfATDRIAVIYRG 530
778888898765555553799**************************************************************998578********* PP
TIGR03864 209 kvlaqGaaael 219
++ ++el
MMSYN1_0168 531 DIVELAESNEL 541
*9987766665 PP
>> TIGR01978 sufC: FeS assembly ATPase SufC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.5 0.1 8e-07 6.1e-05 1 67 [. 10 78 .. 10 111 .. 0.82
2 ! 40.4 0.0 6.5e-13 5e-11 114 228 .. 423 537 .. 372 551 .. 0.82
Alignments for each domain:
== domain 1 score: 20.5 bits; conditional E-value: 8e-07
TIGR01978 1 Lkikdlhvsved....keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdll 67
Lk++dl ++ + + +kg++ +v kGe+ ++G GsGk t+ ++++g + +++G i+++++ l
MMSYN1_0168 10 LKVRDLLIEFGNgrnkLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQ--PISDGAIYFENKLLR 78
567777777655433357789*******************************86..589****99988765 PP
== domain 2 score: 40.4 bits; conditional E-value: 6.5e-13
TIGR01978 114 ldllefek.llkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllel 209
+d ++ ++ l+++ le++ l e l+R+ fsGG ++r i + ++++Pk+++ De s lDv +++ + k++++ + + + i+h +++
MMSYN1_0168 423 IDKKDIKRfLINQLLETVGLLPEHLSRYPH-EFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQfDLTYIFIAHDLSVVR- 518
444444331567788888888999999865.5*********************************9999***********999**********9997. PP
TIGR01978 210 ikPdvvhvlldGrivksGd 228
+ d + v+++G iv+ +
MMSYN1_0168 519 FATDRIAVIYRGDIVELAE 537
578************8665 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.0 0.0 2.3e-09 1.7e-07 9 91 .. 22 110 .. 10 150 .. 0.72
2 ! 30.7 0.0 7.2e-10 5.5e-08 107 176 .. 432 502 .. 420 519 .. 0.85
Alignments for each domain:
== domain 1 score: 29.0 bits; conditional E-value: 2.3e-09
TIGR01189 9 eRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrd.ela.....eellylgHldglKaeLsal 91
R++ + ++g++f++ Ge+ ++G+ G+GKtt+ R + G+++ ++G + +++k l + + ++ + ly+ ++ l ++Ls
MMSYN1_0168 22 GRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPdVYKinqkiARHLYIMQQNQLTTSLSLN 110
599999*********************************************98765543321222000003345666666666666655 PP
== domain 2 score: 30.7 bits; conditional E-value: 7.2e-10
TIGR01189 107 tveealekvgLs.gledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlar 176
+++ le+vgL ++ + ++ s Gq++R+++ar l+ k + + DEP+ alD++ +++++lla+ ++
MMSYN1_0168 432 LINQLLETVGLLpEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQ 502
688999****852666778899***************************************9999887655 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.4 0.1 0.00014 0.01 335 377 .. 10 55 .. 3 74 .. 0.79
2 ! 42.1 0.0 1.3e-13 1e-11 471 558 .. 453 543 .. 432 568 .. 0.87
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 0.00014
TIGR01192 335 vefrdisfefanss...qgvrdvsfeakagqtvaivgptgagkttl 377
++ rd+ ef n + + v+ v+f++ g+t +vg +g+gktt+
MMSYN1_0168 10 LKVRDLLIEFGNGRnklKAVKGVTFDVYKGETFGLVGESGSGKTTI 55
5667777788765422278999***********************8 PP
== domain 2 score: 42.1 bits; conditional E-value: 1.3e-13
TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrk..nrttfiiahrlstvrea.dlvlfldqgrliekgsfdeliq 558
++sgg+rqr+ iara++ +v de saldv a++ + + ++k + t + iah ls vr a d + + +g ++e +el +
MMSYN1_0168 453 EFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKqfDLTYIFIAHDLSVVRFAtDRIAVIYRGDIVELAESNELFD 543
68******************************************99998334566679********7648999999******999999876 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.6 0.0 3.4e-08 2.6e-06 20 62 .. 29 71 .. 17 106 .. 0.90
2 ? -2.9 0.0 7.9 6e+02 111 155 .. 173 216 .. 166 261 .. 0.73
3 ! 23.8 0.0 6.1e-08 4.6e-06 135 212 .. 453 531 .. 423 544 .. 0.82
Alignments for each domain:
== domain 1 score: 24.6 bits; conditional E-value: 3.4e-08
TIGR01288 20 vndlsftiaagecfgllgpngagkstiarlvlglispdegkit 62
v+ ++f + +ge fgl+g g+gk+ti r ++g+ + + g i
MMSYN1_0168 29 VKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIY 71
77899*********************************99986 PP
== domain 2 score: -2.9 bits; conditional E-value: 7.9
TIGR01288 111 eieevipsllefarleskadvrvadlsggmkrrltlaralindpq 155
i + + ll++ rl+ ka ++s ++ l a in q
MMSYN1_0168 173 AITDNLKRLLKIIRLQEKASRITKNISKHTSVKVELQDA-INKYQ 216
566677788999999999988777888777777666655.44444 PP
== domain 3 score: 23.8 bits; conditional E-value: 6.1e-08
TIGR01288 135 dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllar.gktilltthlmeeaerlcdrlcvleagr 212
++sgg ++r+ +arali p++++ dep + ld r i + l + + t ++ +h + dr+ v+ g
MMSYN1_0168 453 EFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQfDLTYIFIAHDLSVVRFATDRIAVIYRGD 531
78*************************************9998877765425678888888888888899999998885 PP
>> TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.9 0.2 4.8e-05 0.0037 337 380 .. 28 71 .. 4 77 .. 0.70
2 ! 36.0 0.1 9.7e-12 7.4e-10 66 237 .. 359 533 .. 344 539 .. 0.74
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 4.8e-05
TIGR03719 337 liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelk 380
++ ++f++ kg G++G G+Gk+t+ + i+g + +G++
MMSYN1_0168 28 AVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIY 71
46778899999999999999999999999999988888888775 PP
== domain 2 score: 36.0 bits; conditional E-value: 9.7e-12
TIGR03719 66 egikvGyleqeP..kldeektvrenveegvaeikealdrfeeisaklaeedadfdklleeqaklqekidaadawdldsk.leiamdalrl.pee.dak 158
++ + ++ q+P +l+e+ v+e+++eg+++ e+ +e+++++ + f++ e++ + +i + d d+++ +++ ++++ l pe+
MMSYN1_0168 359 NKKDMQMIFQDPssSLNERMAVEEIIKEGLDNFPELY-SNDEVKKAYQQW---FNQKNPENKIV--EISEIDKKDIKRFlINQLLETVGLlPEHlSRY 450
45566778888844599*************9987655.568999999876...33333333222..23334444444431355555555414331344 PP
TIGR03719 159 veklsGGekrrvalcrlllekPdlllldePtnhld....aesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegi 237
+++sGG+++r+ ++r l+ kP +++ deP ld a+ ++ l kf k+++ t + ++hd + +++ i + rG +
MMSYN1_0168 451 PHEFSGGQRQRIGIARALIMKPKFVVADEPISALDvsirAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFATDRIAVIYRGDIV 533
589*******************************9666667889999****************99999999999999999765 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.7 0.1 6.8e-06 0.00052 30 118 .. 18 111 .. 2 115 .. 0.77
2 ? -2.6 1.0 4.7 3.6e+02 259 330 .. 289 363 .. 280 373 .. 0.60
3 ! 32.6 0.0 1e-10 7.7e-09 134 245 .. 426 532 .. 418 544 .. 0.75
Alignments for each domain:
== domain 1 score: 16.7 bits; conditional E-value: 6.8e-06
TIGR00955 30 alarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrs..ekglkvsgdvllnGekveakemra...isayvqqddlfiptltvre 118
+ + +++ + +k+v+ +++Ge ++G SG+GKtT+ a+ + + g + + ll G+ + ++++ ++ y++q++ + +l+ ++
MMSYN1_0168 18 EFGNGRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQpiSDGAIYFENKLLRGKSPDVYKINQkiaRHLYIMQQNQLTTSLSLND 111
45566788999999************************99997665115777777889999999888777651225669999999888887765 PP
== domain 2 score: -2.6 bits; conditional E-value: 4.7
TIGR00955 259 selglpcPenynpadFvlkvlavep.....gseeesretiekicdaeaksklsreveentnlasgkekklvkdsene 330
+l l+cP++ n +++lk+l + +++++ ++ e ++++ ++s+ + +++ +s ++k+l ++++++
MMSYN1_0168 289 MNLALTCPKYKN--NYYLKKLKQRIeylnlNNKTKLAQEYESVIQTVENSDFYDNLKTAEIFKSPNKKELKENKKDM 363
567788999887..588888876541111133444555666666666677666666666555555555555555544 PP
== domain 3 score: 32.6 bits; conditional E-value: 1e-10
TIGR00955 134 kkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgk.tviltiHQPssel 230
k+ kr ++++le++gL r SgG+r+R+ +a l+ +P+++++DEP s LD a+++++L k+ ++ t i H s +
MMSYN1_0168 426 KDIKRFLINQLLETVGLLPEHLSRYP--H---EFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDlTYIFIAHDLS-VV 517
45899999999999999986665554..4...49*********************************999*****99987765413444444433.33 PP
TIGR00955 231 felfdkiillaeGrv 245
d+i ++ +G +
MMSYN1_0168 518 RFATDRIAVIYRGDI 532
334456666555555 PP
>> TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.3 0.0 0.0011 0.08 468 513 .. 28 73 .. 4 111 .. 0.90
2 ! 32.1 0.0 1.3e-10 1e-08 579 647 .. 449 521 .. 415 531 .. 0.84
Alignments for each domain:
== domain 1 score: 9.3 bits; conditional E-value: 0.0011
TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkp 513
++ ++f+v +G+ ++G G GK + R + ++ P+ g + +
MMSYN1_0168 28 AVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFE 73
68889**********************************9887765 PP
== domain 2 score: 32.1 bits; conditional E-value: 1.3e-10
TIGR00954 579 dWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyela....kevgitllsvshrksLwkyHe 647
+ + sgG++qRi++AR + kPkf+v DE sA+ v + ++ +l+ k++++t++ ++h s++++ +
MMSYN1_0168 449 RYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLakfqKQFDLTYIFIAHDLSVVRFAT 521
566789**********************************9999987633336788999*****999999865 PP
>> TIGR01257 rim_protein: rim ABC transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 6.5 0.0 0.0023 0.18 1937 1996 .. 9 70 .. 2 97 .. 0.74
2 ! 24.8 0.0 6.9e-09 5.2e-07 1043 1138 .. 434 532 .. 423 542 .. 0.86
Alignments for each domain:
== domain 1 score: 6.5 bits; conditional E-value: 0.0023
TIGR01257 1937 ilrlneltkvy.sgt.sspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsgda 1996
il++++l + +g av + v ge fgl+g g+gktt + + g ++ g
MMSYN1_0168 9 ILKVRDLLIEFgNGRnKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAI 70
566665543331333134689999999*******************9999999887777765 PP
== domain 2 score: 24.8 bits; conditional E-value: 6.9e-09
TIGR01257 1043 eamledtglhhk.rneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrs..grtiimsthhmdeadllgdriaiisq 1135
+ +le gl +++sgg ++++ +a a++ k vv dep s +d r i +ll k++ t i+ +h + + dria+i +
MMSYN1_0168 434 NQLLETVGLLPEhLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKqfDLTYIFIAHDLSVVRFATDRIAVIYR 529
567777776543035567899********************************************987225799********************99 PP
TIGR01257 1136 grl 1138
g +
MMSYN1_0168 530 GDI 532
865 PP
>> TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.1 0.1 0.037 2.8 1302 1344 .. 29 71 .. 10 80 .. 0.77
2 ? -3.3 0.1 3 2.3e+02 1149 1184 .. 201 236 .. 166 244 .. 0.71
3 ! 25.3 0.0 7.5e-09 5.7e-07 1422 1506 .. 454 541 .. 429 546 .. 0.60
Alignments for each domain:
== domain 1 score: 3.1 bits; conditional E-value: 0.037
TIGR00957 1302 lrdlnvtieggekvgivgrtgagkssltlglfrinesaegeii 1344
++ ++ + ge g+vg +g+gk+++ +++ i+ ++g i
MMSYN1_0168 29 VKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIY 71
4667777888888888888888888888888888877777765 PP
== domain 2 score: -3.3 bits; conditional E-value: 3
TIGR00957 1149 etllgvsvirafeeqerfiiqsdlkvdenqkayyps 1184
t + v + a ++ ++f++ s lkv + ++++y +
MMSYN1_0168 201 HTSVKVELQDAINKYQDFVHDSILKVKDLENTIYNT 236
466677778899999999999999999888888865 PP
== domain 3 score: 25.3 bits; conditional E-value: 7.5e-09
TIGR00957 1422 lsvgqrqlvclarallrktkilvldeataavdletdnliq...stirtqfedctvltiahrlntimdyt.rvlvldkgevaefdapsel 1506
+s gqrq + +aral+ k k +v de +a+d+ i + + qf+ t + iah l + t r+ v+ +g++ e+ el
MMSYN1_0168 454 FSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMnllAKFQKQFD-LTYIFIAHDLSVVRFATdRIAVIYRGDIVELAESNEL 541
556666666666666666666666666666666655444311133444553.4555666666665433326666666666666555554 PP
>> TIGR00956 3a01205: pleiotropic drug resistance family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.4 0.0 0.0011 0.081 755 805 .. 5 55 .. 1 103 [. 0.88
2 ! 16.8 0.0 3e-06 0.00023 211 290 .. 455 533 .. 449 543 .. 0.86
Alignments for each domain:
== domain 1 score: 8.4 bits; conditional E-value: 0.0011
TIGR00956 755 sgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttL 805
++e+i ++rdl e +k++ ++ v+ v G+ L+G+sG Gktt+
MMSYN1_0168 5 KNEAILKVRDLLIEFGNGRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTI 55
5689999********9999999999999999*******************7 PP
== domain 2 score: 16.8 bits; conditional E-value: 3e-06
TIGR00956 211 sGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqi 290
sGG+r+R+ ia +l++k+k+ + D+ LD + ++++ l + + + t + ++ s + + d++ v+y G ++
MMSYN1_0168 455 SGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFAT-DRIAVIYRGDIV 533
8999999999999999999999999999999999999999999999999999888888888888875.999999999877 PP
>> TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.9 0.1 1.2e-08 8.9e-07 2 33 .. 532 562 .. 531 574 .. 0.85
Alignments for each domain:
== domain 1 score: 26.9 bits; conditional E-value: 1.2e-08
TIGR01727 2 ivElgsaeelfknpkHPYtkaLlkaiPeikkr 33
ivEl++ +elf p HPYt+ Ll+aiP + +
MMSYN1_0168 532 IVELAESNELFDLPLHPYTRSLLSAIPLPD-P 562
9**************************883.3 PP
>> TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.5 0.0 0.0017 0.13 1218 1268 .. 10 62 .. 3 75 .. 0.71
2 ? -1.2 0.2 0.74 56 1146 1224 .. 152 230 .. 125 265 .. 0.72
3 ! 14.2 0.0 1.7e-05 0.0013 549 623 .. 454 530 .. 433 544 .. 0.77
Alignments for each domain:
== domain 1 score: 7.5 bits; conditional E-value: 0.0017
TIGR01271 1218 mtvkdltakyteagrav..lqdlsfsveagqrvgllgrtgsgkstllsallrl 1268
++v+dl + + ++ + + ++ ++f v g++ gl+g +gsgk+t+ a++ +
MMSYN1_0168 10 LKVRDLLIEFGNGRNKLkaVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGI 62
67788888877655543225678899999999999999999999988887655 PP
== domain 2 score: -1.2 bits; conditional E-value: 0.74
TIGR01271 1146 tlamnilstlqwavnssidvdglmrsvsrvfkfidlpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdlt 1224
l l +++ n si ++++ ++r++k i l ++ s+ +k+ +k+ kv + + + + + ++vkdl
MMSYN1_0168 152 NLNTTKLVSVKKNANLSIVIQAITDNLKRLLKIIRLQEKASRITKNISKHTSVKVELQDAINKYQDFVHDSILKVKDLE 230
4444455566677788999999999999999999999999998888888766666666655555566666666666664 PP
== domain 3 score: 14.2 bits; conditional E-value: 1.7e-05
TIGR01271 549 lsggqrarislaravykdadlylldspfsyldvvtekeifesclcklla..nktrilvtsklehlkka.dkilllheg 623
+sggqr ri++ara+ + + d p+s ldv +i++ l k+ + t i+++ l ++ a d+i +++ g
MMSYN1_0168 454 FSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNL-LAKFQKqfDLTYIFIAHDLSVVRFAtDRIAVIYRG 530
79********************************99999864.45543311456677766666666433666666555 PP
>> TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.2 0.1 0.0048 0.37 360 411 .. 32 83 .. 4 99 .. 0.85
2 ? 4.1 0.0 0.041 3.2 469 549 .. 453 534 .. 435 539 .. 0.84
Alignments for each domain:
== domain 1 score: 7.2 bits; conditional E-value: 0.0048
TIGR01194 360 idlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrd 411
+ + + +Ge +vGe G Gk+t+ + ++G+ +G + ++ + + +s d
MMSYN1_0168 32 VTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPD 83
566788999999*******************999999998877766666555 PP
== domain 2 score: 4.1 bits; conditional E-value: 0.041
TIGR01194 469 dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrr.Gktilvishddryfela.drlikladGkvvk 549
++s Gqr+r+ + a + + ++ de + d + + + ll ++++ t + i+hd ++a dr+ + G +v+
MMSYN1_0168 453 EFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMN-LLAKFQKQfDLTYIFIAHDLSVVRFAtDRIAVIYRGDIVE 534
6799***********9999999999**********9887765.666665552789********99998768998899999986 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (622 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 530 (0.118093); expected 89.8 (0.02)
Passed bias filter: 163 (0.0363191); expected 89.8 (0.02)
Passed Vit filter: 67 (0.0149287); expected 4.5 (0.001)
Passed Fwd filter: 59 (0.0131462); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 59 [number of targets reported over threshold]
# CPU time: 0.65u 0.20s 00:00:00.85 Elapsed: 00:00:00.34
# Mc/sec: 2627.11
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0168 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0169 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0169.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0169/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0169 [L=1033]
Description: AmiA? 2=Generic Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1033 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 220 (0.0490196); expected 89.8 (0.02)
Passed bias filter: 111 (0.0247326); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.27u 0.10s 00:00:00.37 Elapsed: 00:00:00.21
# Mc/sec: 7063.96
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0169 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0195 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0195.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0195/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0195 [L=1036]
Description: potCD or potHI? 2=Generic Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-19 67.1 15.6 3.9e-19 66.6 15.6 1.2 1 TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transp
1.2e-14 52.4 17.1 2.9e-14 51.2 17.1 1.7 1 TIGR02141 modB_ABC: molybdate ABC transporter, permease prot
3.1e-13 47.7 15.9 1.1e-12 45.9 15.9 1.8 1 TIGR01581 Mo_ABC_porter: NifC-like ABC-type porter
2.2e-11 41.8 17.2 8e-11 40.0 17.2 1.8 1 TIGR02139 permease_CysT: sulfate ABC transporter, permease p
5.3e-11 40.4 16.5 2.6e-10 38.2 16.5 2.0 1 TIGR00969 3a0106s02: sulfate ABC transporter, permease prote
2.2e-10 38.4 11.8 2.8e-10 38.1 5.2 2.2 2 TIGR03226 PhnU: 2-aminoethylphosphonate ABC transporter, per
1.1e-09 35.8 17.5 2.1e-09 34.9 17.5 1.5 1 TIGR00974 3a0107s02c: phosphate ABC transporter, permease pr
4e-08 31.2 11.5 6.9e-08 30.4 11.5 1.3 1 TIGR03255 PhnV: 2-aminoethylphosphonate ABC transport system
9.3e-08 29.8 15.0 3.2e-07 28.0 15.0 1.8 1 TIGR02140 permease_CysW: sulfate ABC transporter, permease p
5.4e-05 20.7 12.9 0.00012 19.6 12.9 1.5 1 TIGR03416 ABC_choXWV_perm: choline ABC transporter, permease
0.00039 17.5 19.8 0.0047 13.9 14.8 2.9 2 TIGR02138 phosphate_pstC: phosphate ABC transporter, permeas
0.0011 16.5 8.0 0.0011 16.5 8.0 2.5 3 TIGR01097 PhnE: phosphonate ABC transporter, permease protei
0.0012 15.9 11.8 0.015 12.3 10.5 2.2 1 TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transpor
------ inclusion threshold ------
0.061 10.3 4.2 0.16 8.9 4.2 1.7 1 TIGR01760 tape_meas_TP901: phage tail tape measure protein,
Domain annotation for each model (and alignments):
>> TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 66.6 15.6 1.2e-21 3.9e-19 10 226 .. 9 220 .. 1 327 [. 0.81
Alignments for each domain:
== domain 1 score: 66.6 bits; conditional E-value: 1.2e-21
TIGR03262 10 lllllllalllPllalltkavldkdGef....vglanlaevlatssllqslgnsltvsaivtaivvplafafayaltrsrlpgkklfrlvallPllaP 103
++++ll++ +P+la++ ++ + d ++ + ++ + +++++s +++s+ sl v++i+t+++ ++ + a +l+r + +++ + va +Pl+
MMSYN1_0195 9 YFAFVLLFIYAPILAMVVFSFNNGDTTIkwthASFSWYESFFKNSPFIKSIITSLFVAVISTIVSLVIGTLAAIGLSRVSRVTRNKWVSVANIPLINA 106
567889****************9887642122566777899********************************************************* PP
TIGR03262 104 sllsaialvylfGnqGllkellggasiYGllGiviaevfytfPhallilltalslaDarLYeaaralgaskirkfltvtLPgakyglisaalvvftlv 201
+++a++l+ +f Gl +Gll +++a++ + P++l+ ++ l+ +D +L +a+ lga++ + + v LP k ++i+aa ++f ++
MMSYN1_0195 107 DVITAVSLMIVFLIMGLK---------FGLLTLIMAHISFNVPYVLVTIMPRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAIITAAAIAFAMS 195
**********99766653.........89999****************************************************************** PP
TIGR03262 202 itDfGvPkviGGdynvLaldvykqv 226
+ Df + GG +++ +y +
MMSYN1_0195 196 FDDFIISYFTGGMQTNVSTFIYTAK 220
************9888899888764 PP
>> TIGR02141 modB_ABC: molybdate ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.2 17.1 9e-17 2.9e-14 3 203 .. 62 248 .. 60 253 .. 0.85
Alignments for each domain:
== domain 1 score: 51.2 bits; conditional E-value: 9e-17
TIGR02141 3 slkvaviatlllllLgilvawllarkefrgksllealvtlPlvLPPtVlGflLllalgrngligkllellglslvFtfegvvlasvvvslPllvksir 100
sl vavi+t+++l++g+l+a l+r + ++ ++ ++Pl+ +++ + L++++ ++g l F + +++a + +++P+++ +i+
MMSYN1_0195 62 SLFVAVISTIVSLVIGTLAAIGLSRVSRVTRNKWVSVANIPLINADVITAVSLMIVFL---IMG---------LKFGLLTLIMAHISFNVPYVLVTIM 147
899************************99999999********************997...444.........67888999***************** PP
TIGR02141 101 aaleavdkeleeaartlGaselkvflkvtLPlalpgllaglvlsFaralGEFGatlmlaGnipgktrtlplaiYdavesdeeaalllvlvll..llsl 196
l+++d++l++a++ lGa++ +v++kv+LP+++p++++++ ++Fa + +F + ++G ++ ++ iY+a +++ ++ ++++l +ls+
MMSYN1_0195 148 PRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAIITAAAIAFAMSFDDFIISY-FTGGMQT---NVSTFIYTAKKTRPFIFVFGTCLVLviALSI 241
****************************************************6555.5554543...5899****99987666555444444004555 PP
TIGR02141 197 ivlllve 203
i+ +++
MMSYN1_0195 242 ITWNAIN 248
5555555 PP
>> TIGR01581 Mo_ABC_porter: NifC-like ABC-type porter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.9 15.9 3.4e-15 1.1e-12 15 221 .. 51 239 .. 38 243 .. 0.85
Alignments for each domain:
== domain 1 score: 45.9 bits; conditional E-value: 3.4e-15
TIGR01581 15 tseelqkalrlSlltslislllavvlgvPtAyvlarvrfplkklldtllelPlvlPplVaGiaLLllfgrlgllgsyleaagiklifstlavvlAqtf 112
+ +k++++Sl ++is+++ +v+g+ A l+rv+ + ++ + ++Pl+ ++++ ++L+++f + l f l++++A +
MMSYN1_0195 51 KNSPFIKSIITSLFVAVISTIVSLVIGTLAAIGLSRVSRVTRNKWVSVANIPLINADVITAVSLMIVFLI------------MGLKFGLLTLIMAHIS 136
5566789*******************************999999999********************966............5578999********* PP
TIGR01581 113 vaapllvrvlrstfesvdaeyeevarslGageletflkvtlPlarkallaglvlafaRalGeFGAtlllAgslqgktrtlplaiylalesddieaava 210
+p++++++ ++++d+ + ++++ lGa++ +++ kv lP++++a+++++ +afa + +F + g++q++ ++ iy+a ++ + v
MMSYN1_0195 137 FNVPYVLVTIMPRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAIITAAAIAFAMSFDDFIIS-YFTGGMQTN---VSTFIYTAKKTR-PFIFVF 229
***************************************************************654.677885544...566799988887.444444 PP
TIGR01581 211 lavlllviaal 221
+ l+lvia l
MMSYN1_0195 230 GTCLVLVIA-L 239
444444444.3 PP
>> TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.0 17.2 2.5e-13 8e-11 29 260 .. 36 252 .. 5 257 .. 0.78
Alignments for each domain:
== domain 1 score: 40.0 bits; conditional E-value: 2.5e-13
TIGR02139 29 lkaselgweefwkiiteprvlaalklslgtaliaalinavfGlllaWvlvryefpgkrlvdalvdlPfalPtavaGialatlyaenGwigklleelgi 126
+k ++ +++ + + +++ ++++ +sl +a+i++++ v+G+l a l r + ++ ++ ++P+ ++ ++l+ ++ G +
MMSYN1_0195 36 IKWTHASFSWYESFFKNSPFIKSIITSLFVAVISTIVSLVIGTLAAIGLSRVSRVTRNKWVSVANIPLINADVITAVSLMIVFLIMG----------L 123
33344455566677888899*********************************99999999*******************9996554..........3 PP
TIGR02139 127 kvaytklGivvalvfvslPfvvrtvqPvleelekeleeaaaslGasrlqvfrkvilPellpalltGlalafaravGeyGsvifiagnlPlkteilpll 224
+ l +++a + +P+v+ t+ P l++++ l +a++ lGa++ qv+ kvilP l+pa++t +a+afa + ++ f g ++t++ + +
MMSYN1_0195 124 --KFGLLTLIMAHISFNVPYVLVTIMPRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAIITAAAIAFAMSFDDFIISYFTGG---MQTNVSTFI 216
..467788899999999*********************************************************999855444443...667776666 PP
TIGR02139 225 ivv.kleqydyegataiavvllvisfvlllvinllqa 260
+ k + + t + +++++s++ +inl+++
MMSYN1_0195 217 YTAkKTRPFIFVFGTCLV-LVIALSIITWNAINLIKQ 252
554145567777666654.445667777777777754 PP
>> TIGR00969 3a0106s02: sulfate ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.2 16.5 8e-13 2.6e-10 26 268 .. 12 249 .. 2 253 .. 0.77
Alignments for each domain:
== domain 1 score: 38.2 bits; conditional E-value: 8e-13
TIGR00969 26 yvllilllPviallvkafskg..........leeflelltdpaavsalkltllvaliavllntvfGllvawvlaRyqFpGkklldaliDlPFalstvv 113
+vll + P+ a++v +f++g ++ + + +++++ +l va+i++++ v+G+l+a l+R+ ++ ++ ++P + v+
MMSYN1_0195 12 FVLLFIYAPILAMVVFSFNNGdttikwthasFSWYESFFKNSPFIKSIITSLFVAVISTIVSLVIGTLAAIGLSRVSRVTRNKWVSVANIPLINADVI 109
455555567766666666655221111111033344556788899***************************************************** PP
TIGR00969 114 aGlvlvllygknGwlGellaefdikiifsllGvvlatiFvslPFvvRevePvleelgeeaeeaaatLGasewqtFwrvilPsirwallyGvvltfaRa 211
+ ++l++++ G + f+ll +++a i +P+v+ ++ P l++++++ +a LGa+++q+ +vilP +++a+++ +++fa +
MMSYN1_0195 110 TAVSLMIVFLIMG------------LKFGLLTLIMAHISFNVPYVLVTIMPRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAIITAAAIAFAMS 195
*******997665............4699999*****************************************************************9 PP
TIGR00969 212 lGefGavvvvsgnipfktlvlpllveerleqydtaaasaiaavl.llvslvlLllknl 268
+f ++s + ++ ++ +++++ + + vl +++s+++ +nl
MMSYN1_0195 196 FDDF----IISYFTGGMQTNVSTFIYTAKKTRPFIFVFGTCLVLvIALSIITWNAINL 249
9998....44444445555566677766666666555555444314667776666665 PP
>> TIGR03226 PhnU: 2-aminoethylphosphonate ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.1 0.5 0.019 6.1 76 116 .. 42 82 .. 5 88 .. 0.75
2 ! 38.1 5.2 8.8e-13 2.8e-10 176 272 .. 124 219 .. 103 254 .. 0.84
Alignments for each domain:
== domain 1 score: 4.1 bits; conditional E-value: 0.019
TIGR03226 76 tleayrsvvdskdvvdvllttlqvlfaaaatalllGvllal 116
++ y s+++ + + t+l+v+ +++ +l++G+l a+
MMSYN1_0195 42 SFSWYESFFKNSPFIKSIITSLFVAVISTIVSLVIGTLAAI 82
355689******************************98765 PP
== domain 2 score: 38.1 bits; conditional E-value: 8.8e-13
TIGR03226 176 lfsaqGvilaeivvytplvvrpllaalatldkrlleaasilGanglrlirrvvlplalpalaaGvilcllltlnefGillvlGakrlitlpvavysk 272
f++ +i+a+i + p+v+ ++ l+++d++l++a+ lGa+ +++ +v+lp+ pa+++ +++ + ++ ++f i + G + + +y+
MMSYN1_0195 124 KFGLLTLIMAHISFNVPYVLVTIMPRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAIITAAAIAFAMSFDDFIISYFTGGMQTNV-STFIYTA 219
5888899***************************************************************************9987764.4455654 PP
>> TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.9 17.5 6.6e-12 2.1e-09 7 196 .. 9 194 .. 4 255 .. 0.84
Alignments for each domain:
== domain 1 score: 34.9 bits; conditional E-value: 6.6e-12
TIGR00974 7 lvllaallallplilillyilikGlsalnlefltseptetgae.gGilpaivgtlllillaiviavplGilaaiYlaEYakegkltkvirllvevLag 103
+++++ l+ +p+++++++ + +G ++++++ + ++ e+ + + + i+ +l+++++++++++ +G laai l++ ++ ++ k +++++ L
MMSYN1_0195 9 YFAFVLLFIYAPILAMVVFSFNNGDTTIKWTHASFSWYESFFKnSPFIKSIITSLFVAVISTIVSLVIGTLAAIGLSRVSRVTR-NKWVSVANIPLIN 105
56778889999**********************999999988868899*****************************9998875.5588888888887 PP
TIGR00974 104 vPSIvvGlfglalfvktvlklgfsllagallaLallilPviirtteealkaVPkelreaslaLGatkwqtilkivlpaAlkGiltGiiLaiaR 196
++ ++ + +f++ +lk+g l a +++ +P++ +t lk + +l +as+ LGa+ q+++k++lp +++i+t++ +a a
MMSYN1_0195 106 AD-VITAVSLMIVFLIMGLKFGLLTLIMA--HISF-NVPYVLVTIMPRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAIITAAAIAFAM 194
76.66666666666664556655555555..4777.99************************************************9998875 PP
>> TIGR03255 PhnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.4 11.5 2.1e-10 6.9e-08 23 213 .. 12 199 .. 6 253 .. 0.80
Alignments for each domain:
== domain 1 score: 30.4 bits; conditional E-value: 2.1e-10
TIGR03255 23 fivlfv.lplvvvllsslaqqwsGtilpaGyslrhfeal..graefdallasleiGlgvallalllGvalalalaleGvkrrgvgklldalvylpsav 117
f++lf+ p+ +++ s + + ti + s+ ++e + + + ++++sl + + ++++l++G +a+ l + + +r k++++ +p
MMSYN1_0195 12 FVLLFIyAPILAMVVFSFNN-GDTTIKWTHASFSWYESFfkNSPFIKSIITSLFVAVISTIVSLVIGTLAAIGLSRVSRVTR--NKWVSV-ANIPLIN 105
55555414666555555544.4567999999999**886223456799*****************************99999..8***85.5678777 PP
TIGR03255 118 psvvlGlavlvaysakpldlssslaivltvqlvlvlaftyrnvaaalarelavlrevaaslGaspayvlrrvllpllvpairaalalslalslGel 213
v+ +++++ + l+ l ++++++ + ++++ ++ l+++ l +++ lGa v+ +v+lp l pai +a a+++a+s+ ++
MMSYN1_0195 106 ADVITAVSLMIVFLIMGLK--FGLLTLIMAHISFNVPYVLVTIMPRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAIITAAAIAFAMSFDDF 199
8899999999999876665..567888999**************************************************************9775 PP
>> TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.0 15.0 1e-09 3.2e-07 2 201 .. 2 199 .. 1 256 [. 0.82
Alignments for each domain:
== domain 1 score: 28.0 bits; conditional E-value: 1e-09
TIGR02140 2 kvlliavalgllvlllllPlllvfseafekG..........vevffeaisdpdalsalkltllvvlivvPlnlvfGvavawvlarfrfpGkkllltli 89
k ll +++++l++ P+l+++ +f++G ++ + + +++ +++++ +l+v++i+ + lv G ++a+ l+r + ++ +++
MMSYN1_0195 2 KKLLKRSYFAFVLLFIYAPILAMVVFSFNNGdttikwthasFSWYESFFKNSPFIKSIITSLFVAVISTIVSLVIGTLAAIGLSRVSRVTRNKWVSVA 99
56777888999*********9999999998855544433334455667888999******************************************** PP
TIGR02140 90 dlPfsvsPvvaGlvlvllfgsagllgevleekdlkiifalPgivlatlfvtlPfvareliPvleeqGteeeeaaltlGasawqvflrvtlPnikwgll 187
++P+ + v++ ++l+++f gl f+l ++++a + +P+v ++P l++ + +a+ lGa++ qv+++v+lP +k +++
MMSYN1_0195 100 NIPLINADVITAVSLMIVFLIMGL------------KFGLLTLIMAHISFNVPYVLVTIMPRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAII 185
****************99966554............36777788888888888999999*************************************99 PP
TIGR02140 188 yGviltnaralGef 201
+ ++ a ++ +f
MMSYN1_0195 186 TAAAIAFAMSFDDF 199
99998888887777 PP
>> TIGR03416 ABC_choXWV_perm: choline ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.6 12.9 3.7e-07 0.00012 78 243 .. 49 218 .. 7 243 .. 0.73
Alignments for each domain:
== domain 1 score: 19.6 bits; conditional E-value: 3.7e-07
TIGR03416 78 lilnqgyWeetvetlalvlsatvvclviGv..PlGia....aakrpklyaamrPvldlmqtlPtfvyliPalvlfGl..GvvPGliatvifvlpapir 167
+ n + ++++++l + + +t+v+lviG +G+ +++++++ a P+++ + t v l+ + +++Gl G ++a + f +p +
MMSYN1_0195 49 FFKNSPFIKSIITSLFVAVISTIVSLVIGTlaAIGLSrvsrVTRNKWVSVANIPLIN--ADVITAVSLMIVFLIMGLkfGLLTLIMAHISFNVPYVLV 144
56789999*********************7335676521223455666666667664..346666777666666665336677788888888888777 PP
TIGR03416 168 ltklGissvpkelveaakafGatksqlllkvelPaalpqimaGltqtimlslsmvviaalvGadGlGvpvvralnt 243
+++++ +l++a+ +Ga+++q+++kv lP p i++ + + +s+ +i+ + G G+ ++v + t
MMSYN1_0195 145 TIMPRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAIITAAAIAFAMSFDDFIISYFTG--GMQTNVSTFIYT 218
6677899**************************************99999999999999877..555555554444 PP
>> TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.9 14.8 1.5e-05 0.0047 6 218 .. 8 193 .. 3 222 .. 0.77
2 ? -0.8 0.2 0.44 1.4e+02 9 57 .. 225 275 .. 217 290 .. 0.60
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 1.5e-05
TIGR02138 6 allliaaviivlvlllivlfllieaipaiekngllefltgteWdadskepvkevygvlplivgtlitsliAlliAvPvsiaiAiflseiapkklkevl 103
+ + +++++i + +l++v+f + ++ +i+ ++ + f + +++ ++s ++ i+ +l +++i++++++ ++ ++Ai ls ++ ++ +
MMSYN1_0195 8 SYFAFVLLFIYAPILAMVVFSFNNGDTTIKWTHAS-FSWYESFFKNS--------PFIKSIITSLFVAVISTIVSLVIGTLAAIGLSRVSRVTRNKWV 96
45556666666667777788888888888888555.66666664333........3689999999999999999999999999999999988888888 PP
TIGR02138 104 kpvveLlagiPsvvyGlwGlvvlvpllkelvakvlasnlgleqlassplltaglvLaiMilPtvasisedalravpkslkeaalaLGatkwetirkvi 201
+ +a iP + ++ +v l+ +v +++ ++g l + l+ a + +P+v ++ l+++ sl++a++ LGa + ++ +kvi
MMSYN1_0195 97 S-----VANIPLINADVITAVSLM-----IVFLIMGLKFG---LLT--LIMAHISFN---VPYVLVTIMPRLKKIDPSLIDASYDLGAKNHQVMFKVI 176
7.....489997766555555554.....44555677766...222..444555444...7************************************* PP
TIGR02138 202 lpaaksgivaavvLglg 218
lp k++i++a+ ++++
MMSYN1_0195 177 LPILKPAIITAAAIAFA 193
***********999986 PP
== domain 2 score: -0.8 bits; conditional E-value: 0.44
TIGR02138 9 liaaviivlvlllivlfllieaipaiekng..llefltgteWdadskepvk 57
+i+++ + lvl++ + ++ +ai++i++ + + l++++++ + ++ +
MMSYN1_0195 225 FIFVFGTCLVLVIALSIITWNAINLIKQSRleTKQKLINNNYKLKTISKLN 275
344445555555555678889999998876444555666666655544555 PP
>> TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.5 8.0 3.3e-06 0.0011 10 189 .. 11 189 .. 2 198 .. 0.68
2 ? -2.0 0.1 1.5 4.8e+02 69 99 .. 228 258 .. 210 266 .. 0.80
3 ? 0.2 0.0 0.31 1e+02 115 133 .. 572 590 .. 548 596 .. 0.85
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 3.3e-06
TIGR01097 10 lllllvalv.vlalaelelslarllagleqlaellaellppdwsylpkilkalleTlaiallgtllaavlalplal..laArnltpspllsllvrlll 104
+++ll++++ +la++ + ++ ++ + +++++ e + + + ++k+++ +l +a+++t++++v++++ a+ +++t+++++s++ l+
MMSYN1_0195 11 AFVLLFIYApILAMVVFSFNNGDTTIKWTHASFSWYESF----FKNSPFIKSIITSLFVAVISTIVSLVIGTLAAIglSRVSRVTRNKWVSVANIPLI 104
333333333456666666665555555544433333322....2235578899999999999999999998865551044567888888776665555 PP
TIGR01097 105 n..llRavpelvlAlifvaavGlGplaGvLAlalhtvGvlgklfaeaiEevdegpvealratGasklqvivygvlPqvlpeflsltl 189
n ++ av +++ l ++ + +G l+ ++A + ++v ++ ++ + ++d++ ++a Ga++ qv++ +lP + p+++ +
MMSYN1_0195 105 NadVITAVSLMIVFL--IMGLKFGLLTLIMAHISFNVPYVLVTIMPRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAIITAAA 189
411566665555444..44566777888999999999999999***********************************999987665 PP
== domain 2 score: -2.0 bits; conditional E-value: 1.5
TIGR01097 69 llgtllaavlalplallaArnltpspllsll 99
++gt l +v+al + + A nl+++ l++
MMSYN1_0195 228 VFGTCLVLVIALSIITWNAINLIKQSRLETK 258
6789999999999999999998888766655 PP
== domain 3 score: 0.2 bits; conditional E-value: 0.31
TIGR01097 115 lAlifvaavGlGplaGvLA 133
+ +i+++ +G+G+++G A
MMSYN1_0195 572 WKAILITFIGIGAFSGLTA 590
8899***********9877 PP
>> TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.3 10.5 4.8e-05 0.015 23 226 .. 32 219 .. 20 259 .. 0.81
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 4.8e-05
TIGR01253 23 allalfalageddw.vavftddylqhlvlfsfgqallsallsvifalllaralyrkrflgkkallkllaltlvlpvlvvvfgllsvygrsgwlatlaq 119
+++ + + w ++f+++ + + + s+ a++s+++s++ + l a l r + + + + + l+ +++ l+ v+
MMSYN1_0195 32 GDTTIKWTHASFSWyESFFKNSPFIKSIITSLFVAVISTIVSLVIGTLAAIGLSRVSRVTRNKWVSVANIPLINADVITAVSLMIVFL---------- 119
3445555555555526788999888899999999999999999999999999999988888888888888888877777666665542.......... PP
TIGR01253 120 llglewtfsiyglsgillahlffnlplaarlllqalesipyeqrqlaaqlnlrswqfvklvewpvlrrqilpvaalifmlcfasfavvlslgggpqat 217
++gl +gl +++ah+ fn+p ++ l++i + + +l+ ++ q + v p+l+ i+ +aa+ f + f f + gg t
MMSYN1_0195 120 IMGL-----KFGLLTLIMAHISFNVPYVLVTIMPRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAIITAAAIAFAMSFDDFIISYFT-GG-MQT 210
4555.....579********************************************99999************************766544.44.458 PP
TIGR01253 218 tlelaiyqa 226
+ + iy a
MMSYN1_0195 211 NVSTFIYTA 219
889999987 PP
>> TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.9 4.2 0.00051 0.16 225 329 .. 347 445 .. 330 448 .. 0.76
Alignments for each domain:
== domain 1 score: 8.9 bits; conditional E-value: 0.00051
TIGR01760 225 kkkeqkaaalkkifGke.assalatLltaleklslaknakslkesagsakkeadkmldtlkgqlkllqnalenvaielGeallpalrelaqaltklik 321
kk+e+k++ l k f++e ++++a+L ++e+ l+ +++ lk + + +++ t ++k+lqn+++ ++++l+e + p+ ++ +++ +k ik
MMSYN1_0195 347 KKSEKKLKQLIKQFSSEkDVKKAAKLSLQIET--LQEKVEFLKDQIE----VIKEREQTANLKVKKLQNKIKLLKQDLSEEVNPS-KKTINWYNKKIK 437
44555565555555544156777777777755..7777777777765....44556667778********************996.7889******** PP
TIGR01760 322 ainglake 329
+++++ e
MMSYN1_0195 438 YFEEWIIE 445
*****865 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1036 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 774 (0.17246); expected 89.8 (0.02)
Passed bias filter: 103 (0.0229501); expected 89.8 (0.02)
Passed Vit filter: 18 (0.0040107); expected 4.5 (0.001)
Passed Fwd filter: 15 (0.00334225); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 14 [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.26
# Mc/sec: 5722.08
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0195 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0196 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0196.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0196/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0196 [L=330]
Description: potB or potG? 2=Generic Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6e-16 56.1 21.0 7.6e-16 55.8 21.0 1.0 1 TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transp
2.7e-14 51.2 14.1 2.7e-14 51.2 14.1 1.8 2 TIGR01581 Mo_ABC_porter: NifC-like ABC-type porter
1.6e-12 45.5 20.4 6.4e-12 43.6 20.4 1.8 1 TIGR02139 permease_CysT: sulfate ABC transporter, permease p
1.6e-11 42.2 16.7 1.6e-11 42.2 16.7 1.7 2 TIGR02141 modB_ABC: molybdate ABC transporter, permease prot
6.7e-11 40.1 23.0 2.6e-10 38.2 23.0 2.0 1 TIGR00969 3a0106s02: sulfate ABC transporter, permease prote
5.1e-07 27.1 21.3 1.4e-06 25.6 21.3 1.8 1 TIGR00974 3a0107s02c: phosphate ABC transporter, permease pr
1.2e-06 25.7 22.8 2.6e-05 21.3 22.8 2.5 1 TIGR02138 phosphate_pstC: phosphate ABC transporter, permeas
4.3e-06 24.3 20.5 1.5e-05 22.5 20.5 1.7 1 TIGR03226 PhnU: 2-aminoethylphosphonate ABC transporter, per
2.9e-05 21.7 22.3 0.00015 19.3 22.3 2.0 1 TIGR02140 permease_CysW: sulfate ABC transporter, permease p
0.00049 17.8 20.4 0.0007 17.3 20.4 1.1 1 TIGR03255 PhnV: 2-aminoethylphosphonate ABC transport system
------ inclusion threshold ------
6.7 3.9 14.0 0.44 7.8 8.3 1.9 2 TIGR00159 TIGR00159: TIGR00159 family protein
Domain annotation for each model (and alignments):
>> TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 55.8 21.0 1.9e-18 7.6e-16 7 254 .. 66 312 .. 61 328 .. 0.82
Alignments for each domain:
== domain 1 score: 55.8 bits; conditional E-value: 1.9e-18
TIGR03262 7 lallllllllalllPllalltkavl.dkdGef...vglanlaevlatssllqslgnsltvsaivtaivvplafafayalt..rsrlpgkklfrlvall 98
la ++l++++ ++lPl+ +l+ a++ +dG + +++++++++++++l sl s++ + ++ ++ v + + a ++ +s++ ++++ ++ ++
MMSYN1_0196 66 LAPFILVMVILVILPLVSILIYAFIqPADGITlfkISFEKFVKLFTSNGILYSLFLSILYAIVAGMLCVLIGYPIALMMAqmKSKILARNMW-VIVTM 162
566899*****************984578864334899********************************9998886654115666677766.45678 PP
TIGR03262 99 PllaPsllsaialvylfGnqGllkellggasiYGllGiviaevfytfPhallilltalslaDarLYeaaralgaskirkfltvtLPgakyglisaalv 196
P+ ll+ + l lf ll + i ++ i+i+++++ P a+ + +l+ + L eaa lgask+r+f ++tL + g+++a+ +
MMSYN1_0196 163 PMWISMLLKVLGLQTLF-------YLLADFAIGTPIAIIIGMTYMFLPFAIAPIYDSLESRQTDLEEAALDLGASKFRTFWSITLRSSMPGVLTAFSL 253
88887777766665555.......57888999999*************************************************************** PP
TIGR03262 197 vftlvitDfGvPkviGGd.ynvLaldvykqviGqqnfemgavvgllLLlPallaflvdr 254
v++ + t v + +GG +++ + + ++f ga+v+++L + +lv +
MMSYN1_0196 254 VLVQAATSLIVVHYMGGGrIYLVSAAIESYFFQGNDFGYGAAVSVVLAILVFGLMLVMK 312
********999988876516666777777888889**********99554433333444 PP
>> TIGR01581 Mo_ABC_porter: NifC-like ABC-type porter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -4.3 0.4 6.1 2.5e+03 154 166 .. 64 76 .. 58 84 .. 0.59
2 ! 51.2 14.1 6.5e-17 2.7e-14 3 178 .. 99 265 .. 97 311 .. 0.79
Alignments for each domain:
== domain 1 score: -4.3 bits; conditional E-value: 6.1
TIGR01581 154 Plarkallaglvl 166
P++ +++l ++l
MMSYN1_0196 64 PILAPFILVMVIL 76
5555555544444 PP
== domain 2 score: 51.2 bits; conditional E-value: 6.5e-17
TIGR01581 3 arlgaseilsaltseelqkalrlSlltslislllavvlgvPtAyvlarvr.fplkklldtllelPlvlPplVaGiaLLllfgrlgllgsyleaagikl 99
++ ++ ++++++ts+ + ++l lS+l ++++ +l+v++g P+A+++a+++ + l + + ++++P+ + +LL ++g ++l l+
MMSYN1_0196 99 FKISFEKFVKLFTSNGILYSLFLSILYAIVAGMLCVLIGYPIALMMAQMKsKILARNMWVIVTMPMWIS------MLLKVLGL-QTLFYLLADFA--- 186
6678899******************************************97899***********9986......56666666.55555555554... PP
TIGR01581 100 ifstlavvlAqtfvaapllvrvlrstfesvdaeyeevarslGageletflkvtlPlarkallaglvlafaRalGeFGAt 178
i +++a+++ t++ +p+++ +++++es ++++ee+a lGa++++tf+ +tl ++++l++ l + a +
MMSYN1_0196 187 IGTPIAIIIGMTYMFLPFAIAPIYDSLESRQTDLEEAALDLGASKFRTFWSITLRSSMPGVLTAFSLVLVQAATSLIVV 265
4699*********************************************************998777766665555554 PP
>> TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.6 20.4 1.6e-14 6.4e-12 14 258 .. 71 314 .. 63 324 .. 0.79
Alignments for each domain:
== domain 1 score: 43.6 bits; conditional E-value: 1.6e-14
TIGR02139 14 lylslilllPlaalllka....s......elgweefwkiiteprvlaalklslgtaliaalinavfGlllaWvlvryefp.gkrlvdalvdlPfalPt 100
l + ++++lPl+ +l+ a + ++++e+f k++t++ +l++l ls+ a++a ++ +++G +a ++ + + r + +v +P+ +
MMSYN1_0196 71 LVMVILVILPLVSILIYAfiqpAdgitlfKISFEKFVKLFTSNGILYSLFLSILYAIVAGMLCVLIGYPIALMMAQMKSKiLARNMWVIVTMPMWISM 168
556677888887776554222212222226789***************************************99987653145666788999999999 PP
TIGR02139 101 avaGialatlyaenGwigklleelgikvaytklGivvalvfvslPfvvrtvqPvleelekeleeaaaslGasrlqvfrkvilPellpalltGlalafa 198
+ + l tl+ ll+ ++i t++ i++ ++++ lPf + + le + +leeaa lGas++++f+ + l + +p +lt ++l +
MMSYN1_0196 169 LLKVLGLQTLFY-------LLADFAIG---TPIAIIIGMTYMFLPFAIAPIYDSLESRQTDLEEAALDLGASKFRTFWSITLRSSMPGVLTAFSLVLV 256
999999999984.......78888875...9******************************************************************* PP
TIGR02139 199 ravGeyGsvifiagnlPlkteilpllivvkleqydyegataiavvllvisfvlllvinll 258
+a v ++ g + + + + +++ y +a + +lv ++l v+ l+
MMSYN1_0196 257 QAATSLIVVHYMGGGRIYLVSAAIESYFFQGNDFGYGAAVSVVLAILVFGLML--VMKLI 314
**999988888887766655544445566778888887776666666655544..44333 PP
>> TIGR02141 modB_ABC: molybdate ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.7 0.9 4.3 1.8e+03 189 197 .. 74 82 .. 63 91 .. 0.51
2 ! 42.2 16.7 3.9e-14 1.6e-11 2 203 .. 121 312 .. 120 317 .. 0.80
Alignments for each domain:
== domain 1 score: -3.7 bits; conditional E-value: 4.3
TIGR02141 189 lvllllsli 197
++l++l l+
MMSYN1_0196 74 VILVILPLV 82
223333333 PP
== domain 2 score: 42.2 bits; conditional E-value: 3.9e-14
TIGR02141 2 lslkvaviatlllllLgilvawllarkef.rgksllealvtlPlvLPPtVlGflLllalgrngligkllellglslvFtfegvvlasvvvslPllvks 98
ls+ a++a +l++l+g ++a ++a+ + + + + ++vt+P+ + +Ll +lg ++l l++++ t +++++ + + lP+++ +
MMSYN1_0196 121 LSILYAIVAGMLCVLIGYPIALMMAQMKSkILARNMWVIVTMPMWI------SMLLKVLGLQTLFYLLADFAIG----TPIAIIIGMTYMFLPFAIAP 208
899**********************998634667788888888876......58999***88777766665444....8899**************** PP
TIGR02141 99 iraaleavdkeleeaartlGaselkvflkvtLPlalpgllaglvlsFaralGEFGatlmlaGnipgktrtlplaiYdaves..deeaalllvlvllll 194
i +le+ +++leeaa lGas++++f+ +tL ++pg+l++ l+ ++a ++ ++G +++ Y+ ++ aa+ +vl +l++
MMSYN1_0196 209 IYDSLESRQTDLEEAALDLGASKFRTFWSITLRSSMPGVLTAFSLVLVQAATSLIVVHYMGGGRIY-LVSAAIESYFFQGNdfGYGAAVSVVLAILVF 305
***************************************************999999888765544.3445555555554412666666666666666 PP
TIGR02141 195 slivlllve 203
l++++ +
MMSYN1_0196 306 GLMLVM--K 312
665554..4 PP
>> TIGR00969 3a0106s02: sulfate ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.2 23.0 6.4e-13 2.6e-10 10 267 .. 55 316 .. 46 321 .. 0.72
Alignments for each domain:
== domain 1 score: 38.2 bits; conditional E-value: 6.4e-13
TIGR00969 10 ialvkelklll.giallyvllilllPviallvka..........fskgleeflelltdpaavsalkltllvaliavllntvfGllvawvlaRyq..Fp 94
+++ k + + + +l+++++++lP++ +l+ a f+ ++e+f++l t ++ +l l++l a++a++l +++G +a+++a ++
MMSYN1_0196 55 FHFTKDKVWPIlAPFILVMVILVILPLVSILIYAfiqpadgitlFKISFEKFVKLFTSNGILYSLFLSILYAIVAGMLCVLIGYPIALMMAQMKskIL 152
4555555555434445666667788999888654111111112267899*****************************************97751134 PP
TIGR00969 95 GkklldaliDlPFalstvvaGlvlvllygknGwlGellaefdikiifsllGvvlatiFvslPFvvRevePvleelgeeaeeaaatLGasewqtFwrvi 192
+++ ++ +P +s + l l +l+ lla+f i + + +++++ ++ lPF + + le+ +++ eeaa LGas+++tFw ++
MMSYN1_0196 153 ARNM-WVIVTMPMWISMLLKVLGLQTLF-------YLLADFAIG---TPIAIIIGMTYMFLPFAIAPIYDSLESRQTDLEEAALDLGASKFRTFWSIT 239
4544.46788898888877777777776.......578888765...78899********************************************** PP
TIGR00969 193 lPsirwallyGvvltfaRalGefGavvvvsg.nipf.ktlvlpllveerleqydtaaasaiaavlllvslvlLllkn 267
l s ++++l+ + l a v + g i + + + + + y a ++++a ++ + lv+ l+ n
MMSYN1_0196 240 LRSSMPGVLTAFSLVLVQAATSLIVVHYMGGgRIYLvSAAIESYFFQGNDFGYGAAVSVVLAILVFGLMLVMKLISN 316
*************9999998766666655541343312233344444444445555555566666666666655555 PP
>> TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.6 21.3 3.4e-09 1.4e-06 7 197 .. 69 258 .. 64 320 .. 0.71
Alignments for each domain:
== domain 1 score: 25.6 bits; conditional E-value: 3.4e-09
TIGR00974 7 lvllaallallplilillyilikGlsaln...lefltseptetgaegGilpaivgtlllillaiviavplGilaaiYlaEYakegkltkvirllvevL 101
++l++++l++lpl++il+y +i+ + ++ +++ + +++Gil ++ ++l +++a ++ v +G +a +a ++ l++ + ++v ++
MMSYN1_0196 69 FILVMVILVILPLVSILIYAFIQPADGITlfkI--SFEKFVKLFTSNGILYSLFLSILYAIVAGMLCVLIGYPIALMMAQMK-SKILARNMWVIV-TM 162
789999****************98888874322..22333333334666666666665555555444544444444444433.333333333333.33 PP
TIGR00974 102 agvPSIvvGlfglalfvktvlklgfsllagallaLallilPviirtteealkaVPkelreaslaLGatkwqtilkivlpaAlkGiltGiiLaiaRv 197
S ++ ++gl + + +++ + ++ ++ + lP+ i + l++ +l+ea+l LGa+k++t + i l+++++G+lt++ L + ++
MMSYN1_0196 163 PMWISMLLKVLGLQTLFYLLADFAIGTPIAIIIGMTYMFLPFAIAPIYDSLESRQTDLEEAALDLGASKFRTFWSITLRSSMPGVLTAFSLVLVQA 258
334466666666665555444566666666668999***************************************************987766554 PP
>> TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.3 22.8 6.4e-08 2.6e-05 4 233 .. 63 271 .. 60 322 .. 0.77
Alignments for each domain:
== domain 1 score: 21.3 bits; conditional E-value: 6.4e-08
TIGR02138 4 fkallliaaviivlvlllivlfllieaipaiekngllefltgteWdadskepvkevygvlplivgtlitsliAlliAvPvsiaiAiflseiapkklke 101
+l+ +++v+++lv+l +v +l++ i+ + l++ ++++ + ++ g+l ++ +++ +++A ++ v ++ iA++++++ +k l++
MMSYN1_0196 63 WPILAPFILVMVILVILPLVSILIYAFIQPADGI----TLFKISFEKFV--KLFTSNGILYSLFLSILYAIVAGMLCVLIGYPIALMMAQMKSKILAR 154
5566777777777777777666666555555444....45555554333..345789***************************************** PP
TIGR02138 102 vlkpvveLlagiPsvvyGlwGlvvlvpllkelvakvlasnlgleqlassplltaglvLaiMilPtvasisedalravpkslkeaalaLGatkwetirk 199
+ ++v + i s + + Gl +l ll++ +a +++ ++ ++ + M lP++++ + d+l++ l+eaal LGa+k t ++
MMSYN1_0196 155 NMWVIVTMPMWI-SMLLKVLGLQTLFYLLAD-FA--IGTP-----------IAIIIGMTYMFLPFAIAPIYDSLESRQTDLEEAALDLGASKFRTFWS 237
999998877777.888889999999999988.44..3333...........445566999************************************** PP
TIGR02138 200 vilpaaksgivaavvLglgRAlGETmavamvign 233
++l ++ +g+++a+ L l A ++v + g
MMSYN1_0196 238 ITLRSSMPGVLTAFSLVLVQAATSLIVVHYMGGG 271
****************999887655555555554 PP
>> TIGR03226 PhnU: 2-aminoethylphosphonate ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.5 20.5 3.8e-08 1.5e-05 45 307 .. 65 318 .. 35 322 .. 0.77
Alignments for each domain:
== domain 1 score: 22.5 bits; conditional E-value: 3.8e-08
TIGR03226 45 illlallvlatlvlyplarlvlla.llGdnGitl..eayrsvvdskdvvdvllt.tlqvlfaaaat..alllGvllalllvfrpfpGaelvtrvlely 136
il+ +lv+ lv+ pl + a ++ ++Gitl ++ ++v+ ++l + l +l+a a+ ++l+G +al++ +++++r + +
MMSYN1_0196 65 ILAPFILVMVILVILPLVSILIYAfIQPADGITLfkISFEKFVKLFTSNGILYSlFLSILYAIVAGmlCVLIGYPIALMMAQ---MKSKILARNMWVI 159
34445789999*****98776665278899*998442455555555555554431244554444432277777777766554...4588889998888 PP
TIGR03226 137 valpsflvalaliflyGsaGllsialqrlfaldlppldflfsaqGvilaeivvytplvvrpllaalatldkrlleaasilGanglrlirrvvlplalp 234
v++p ++ + + + G + l+ l fa+ p +i+ + ++ p+ + p+ +l l eaa lGa +r + l ++p
MMSYN1_0196 160 VTMPMWIS-ML-LKVLGLQTLF--YLLADFAIGTP--------IAIIIGMTYMFLPFAIAPIYDSLESRQTDLEEAALDLGASKFRTFWSITLRSSMP 245
88887653.33.3344555443..34445555544........3578888999********************************************* PP
TIGR03226 235 alaaGvilcllltlnefGillvlGakrlitlpvavyskaildidltvaaaialvnlvlslalyalyrraarra 307
++++ +l l+ + + ++ ++G r+ + a+ s d+ aa+++v +l ++l + ++++++
MMSYN1_0196 246 GVLTAFSLVLVQAATSLIVVHYMGGGRIYLVSAAIESYFFQGNDFGYGAAVSVVLAILVFGLMLVMKLISNKF 318
*******************************************************99*999999999988775 PP
>> TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.3 22.3 3.6e-07 0.00015 10 250 .. 70 308 .. 62 321 .. 0.67
Alignments for each domain:
== domain 1 score: 19.3 bits; conditional E-value: 3.6e-07
TIGR02140 10 lgllvlllllPlllvfseafek...G.......vevffeaisdpdalsalkltllvvlivvPlnlvfGvavawvlarfrfp..GkkllltlidlPfsv 95
+ +v+l++lPl++++ +af + G +e+f++ ++ +l +l l++l ++++ l ++ G +a+++a+++ + + + ++ +P+ +
MMSYN1_0196 70 ILVMVILVILPLVSILIYAFIQpadGitlfkisFEKFVKLFTSNGILYSLFLSILYAIVAGMLCVLIGYPIALMMAQMKSKilAR-NMWVIVTMPMWI 166
3455677789*****999985433352221111567788888999999************************9999776541144.4567999**999 PP
TIGR02140 96 sPvvaGlvlvllfgsagllgevleekdlkiifalP.givlatlfvtlPfvareliPvleeqGteeeeaaltlGasawqvflrvtlPnikwgllyGvil 192
s ++ l l lf l+ d+ i ++P +i++ ++ lPf + + le++ t+ eeaal lGas++++f+ +tl + g+l l
MMSYN1_0196 167 SMLLKVLGLQTLF-------YLLA--DFAI--GTPiAIIIGMTYMFLPFAIAPIYDSLESRQTDLEEAALDLGASKFRTFWSITLRSSMPGVLTAFSL 253
9765544443333.......2333..2322..333256666778889**************************************9887777654444 PP
TIGR02140 193 tnaralGefGavsvvsgnirGktntlpllvellyeeyaseaafaaasllallalltlv 250
+ +a + +vv G+ ++ +e + +++ + aa s++ ++ ++ l+
MMSYN1_0196 254 VLVQAAT---SLIVVHYMGGGRIYLVSAAIESYFFQGNDFGYGAAVSVVLAILVFGLM 308
4333322...334444444466667777888888777776655544444444443332 PP
>> TIGR03255 PhnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.3 20.4 1.7e-06 0.0007 22 261 .. 72 313 .. 65 319 .. 0.74
Alignments for each domain:
== domain 1 score: 17.3 bits; conditional E-value: 1.7e-06
TIGR03255 22 vfivlfvlplvvvllsslaqqwsGtilpaGyslrhfealgrae..fdallasleiGlgvallalllGvalalalaleGvkrrgvgklldalvylpsav 117
v+++l +lplv +l+ + q +G i s++ f +l ++ +l s+ + + +l++l+G +al +a+ k + + ++v +p +
MMSYN1_0196 72 VMVILVILPLVSILIYAFIQPADG-ITLFKISFEKFVKLFTSNgiLYSLFLSILYAIVAGMLCVLIGYPIALMMAQMKSKILARNMW--VIVTMPMWI 166
678999******************.77778999999888765422677888888899999999999999999999987777655555..567777766 PP
TIGR03255 118 psv..vlGlavlvaysakpldlssslaivltvqlvlvlaftyrnvaaalarelavlrevaaslGaspayvlrrvllpllvpairaalalslalslGel 213
+ vlGl l y + + +ai++ + + + l+f+ + +l ++l+e+a lGas + + ++l +p + +a++l l + l
MMSYN1_0196 167 SMLlkVLGLQTLF-YLLADFAIGTPIAIIIGMTY-MFLPFAIAPIYDSLESRQTDLEEAALDLGASKFRTFWSITLRSSMPGVLTAFSLVLVQAATSL 262
6542278888776.55556777666666666555.679**********************************************99888887766666 PP
TIGR03255 214 GatltvyppGfatlpvvvislverGy.ildaaalslll..laisllllikl 261
+ + ++ s +G+ + +aa+s++l l l+l++kl
MMSYN1_0196 263 IVVHYMGGGRIYLVSAAIESYFFQGNdFGYGAAVSVVLaiLVFGLMLVMKL 313
444333333345566677777767763445777777762233445555554 PP
>> TIGR00159 TIGR00159: TIGR00159 family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.1 0.3 1.1 4.5e+02 45 63 .. 71 89 .. 47 110 .. 0.63
2 ? 7.8 8.3 0.0011 0.44 8 78 .. 121 195 .. 114 201 .. 0.82
Alignments for each domain:
== domain 1 score: -2.1 bits; conditional E-value: 1.1
TIGR00159 45 vivvvqlislvllllllkf 63
+++v+ +i + +l+ +f
MMSYN1_0196 71 LVMVILVILPLVSILIYAF 89
3444433333333333333 PP
== domain 2 score: 7.8 bits; conditional E-value: 0.0011
TIGR00159 8 ldflsraldlslviilvyklikvvreskavqllkGllvivv....vqlislvllllllkfllekivlilavaivv 78
l++l ++ l + + y + ++ + k+ l + + viv ++++ +vl l++l +ll ++ ++++ai++
MMSYN1_0196 121 LSILYAIVAGMLCVLIGYPIALMMAQMKSKILARNMWVIVTmpmwISMLLKVLGLQTLFYLLADFAIGTPIAIII 195
556666777778888889999999999*********999761222567778999*******************98 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (330 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 530 (0.118093); expected 89.8 (0.02)
Passed bias filter: 199 (0.0443405); expected 89.8 (0.02)
Passed Vit filter: 28 (0.00623886); expected 4.5 (0.001)
Passed Fwd filter: 13 (0.00289661); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 11 [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.22
# Mc/sec: 2154.06
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0196 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0197 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0197.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0197/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0197 [L=351]
Description: potA or potF? 2=Generic Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.8e-110 365.5 0.1 8.1e-110 365.3 0.1 1.0 1 TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transp
2.5e-106 353.4 0.1 3.2e-106 353.0 0.1 1.1 1 TIGR01187 potA: polyamine ABC transporter, ATP-binding prote
5.6e-81 269.5 0.1 7.4e-81 269.1 0.1 1.1 1 TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding pr
2.3e-80 268.3 0.0 2.8e-80 268.0 0.0 1.0 1 TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system
2.2e-67 225.6 1.8 2.2e-67 225.6 1.8 1.4 2 TIGR01186 proV: glycine betaine/L-proline transport ATP bind
2.3e-57 192.7 1.5 5.8e-57 191.3 1.4 1.5 1 TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-bindi
5.6e-55 184.4 0.2 8.3e-55 183.8 0.2 1.2 1 TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding protei
1.9e-53 179.9 0.0 2.4e-53 179.6 0.0 1.1 1 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
1.4e-51 173.1 0.2 1.8e-51 172.7 0.2 1.1 1 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
1.8e-51 173.1 0.7 1.8e-51 173.1 0.7 1.6 2 TIGR04520 ECF_ATPase_1: energy-coupling factor transporter A
2e-51 172.7 0.5 3e-51 172.1 0.5 1.2 1 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
4.3e-51 171.6 0.6 5.5e-51 171.2 0.6 1.1 1 TIGR02673 FtsE: cell division ATP-binding protein FtsE
1.1e-49 167.0 1.0 1.4e-49 166.6 1.0 1.2 1 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
7.8e-48 160.6 1.3 1.1e-47 160.2 1.3 1.2 1 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
1.4e-46 156.8 0.5 1.7e-46 156.5 0.5 1.1 1 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
2.6e-46 155.9 0.4 3.7e-46 155.4 0.4 1.1 1 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
5.3e-46 154.8 1.6 1.2e-44 150.4 1.6 2.0 1 TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transport
7.1e-44 147.9 0.6 9.5e-44 147.5 0.6 1.2 1 TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-bi
3.8e-43 145.9 0.1 5e-43 145.5 0.1 1.2 1 TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP
7.2e-43 144.5 1.0 9.5e-43 144.1 1.0 1.1 1 TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-bi
1.3e-42 143.9 0.2 2.4e-42 142.9 0.0 1.5 1 TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit,
1.4e-42 143.7 1.2 1.9e-42 143.3 1.2 1.2 1 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
1.3e-41 140.7 1.0 1.8e-41 140.1 1.0 1.2 1 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
1.3e-41 140.8 0.0 1.7e-41 140.4 0.0 1.1 1 TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC trans
9.2e-41 137.9 0.1 1.2e-40 137.5 0.1 1.1 1 TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-bindin
2.4e-39 133.4 1.4 4.4e-39 132.5 1.4 1.4 1 TIGR02769 nickel_nikE: nickel import ATP-binding protein Nik
1e-38 130.7 0.1 2.2e-38 129.6 0.1 1.5 1 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
1.7e-38 130.6 0.5 2.4e-38 130.1 0.5 1.2 1 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
6.9e-38 128.4 0.0 1e-37 127.9 0.0 1.1 1 TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding p
4.8e-37 125.5 0.1 4.1e-36 122.5 0.1 1.9 2 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
1.1e-36 124.6 2.0 1.9e-36 123.8 2.0 1.4 1 TIGR03740 galliderm_ABC: lantibiotic protection ABC transpor
1.2e-36 124.3 3.1 4.9e-25 86.0 0.3 2.2 2 TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system
1.9e-36 124.1 0.0 2.2e-36 123.9 0.0 1.0 1 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
6.3e-36 122.1 0.0 8.6e-36 121.7 0.0 1.1 1 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
7.2e-36 121.6 0.0 9.6e-36 121.2 0.0 1.1 1 TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC trans
8.8e-36 121.8 1.6 8.8e-36 121.8 1.6 1.6 2 TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC tran
3.2e-35 119.5 0.1 4.2e-35 119.1 0.1 1.1 1 TIGR00958 3a01208: antigen peptide transporter 2
3.3e-35 119.5 0.0 4.4e-35 119.1 0.0 1.1 1 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
1e-34 117.9 0.0 1.3e-34 117.5 0.0 1.1 1 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
5.7e-34 115.4 0.2 8e-34 114.9 0.2 1.1 1 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
6e-33 112.4 0.3 3.9e-32 109.7 0.3 1.9 1 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
1.4e-32 110.9 0.7 2.8e-32 109.9 0.7 1.4 1 TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
3.6e-32 109.6 0.0 4.7e-32 109.2 0.0 1.2 1 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
2.4e-31 106.8 0.0 2.7e-31 106.6 0.0 1.1 1 TIGR01288 nodI: nodulation ABC transporter NodI
3.7e-30 102.8 1.5 3.4e-29 99.6 1.6 1.8 1 TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protei
2.1e-28 97.2 1.0 3.3e-28 96.6 1.0 1.2 1 TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
8.7e-27 91.8 0.6 1.4e-26 91.2 0.6 1.3 1 TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD f
9.5e-25 85.2 0.1 1.3e-24 84.7 0.1 1.1 1 TIGR01192 chvA: glucan exporter ATP-binding protein
1.2e-24 84.8 0.2 1.7e-24 84.3 0.2 1.1 1 TIGR00955 3a01204: pigment precursor permease
1.3e-24 84.9 2.3 6.6e-24 82.6 2.3 2.1 1 TIGR01978 sufC: FeS assembly ATPase SufC
3e-24 83.7 0.1 8.7e-24 82.2 0.1 1.6 1 TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein
2.6e-23 78.9 0.0 3.3e-23 78.5 0.0 1.0 1 TIGR01257 rim_protein: rim ABC transporter
5.2e-23 79.7 0.6 3.2e-22 77.2 0.6 1.9 1 TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein
4.3e-21 73.0 0.1 6e-21 72.5 0.1 1.1 1 TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
1e-18 65.1 0.7 3.8e-18 63.2 0.7 1.7 1 TIGR00954 3a01203: peroxysomal long chain fatty acyl transpo
2.6e-15 52.9 0.0 4.1e-15 52.3 0.0 1.2 1 TIGR00957 MRP_assoc_pro: multi drug resistance-associated pr
1.6e-13 47.0 0.1 3.2e-13 46.0 0.1 1.3 1 TIGR01271 CFTR_protein: cystic fibrosis transmembrane conduc
1.9e-12 43.6 0.0 2.5e-12 43.2 0.0 1.1 1 TIGR00956 3a01205: pleiotropic drug resistance family protei
5.1e-11 39.4 1.2 8.6e-10 35.4 0.1 2.0 2 TIGR00630 uvra: excinuclease ABC subunit A
0.0027 14.2 0.1 0.0041 13.6 0.1 1.2 1 TIGR00602 rad24: checkpoint protein rad24
------ inclusion threshold ------
0.042 10.9 1.7 0.12 9.4 0.2 2.0 2 TIGR00611 recf: DNA replication and repair protein RecF
Domain annotation for each model (and alignments):
>> TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 365.3 0.1 1.1e-111 8.1e-110 3 330 .. 4 330 .. 2 349 .. 0.92
Alignments for each domain:
== domain 1 score: 365.3 bits; conditional E-value: 1.1e-111
TIGR03265 3 eylsieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayG 100
+ l++++++ke++ +lk is++vk+ge+++lLGPsGCGktt+L+ii G +k+++G+il +++++ +p +kr++ +fqsYaLfP l v +n+a+G
MMSYN1_0197 4 NILELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQFNTIFQSYALFPHLNVFDNVAFG 101
67999********************************************************************************************* PP
TIGR03265 101 LknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeea 198
L+ kk+k++ +++ v + + vgl+g e+k lsGGq+qrva+aral+++P++LLLDeP++aLD k+r+ ++eelk+lq+ +g+t imv hdqeea
MMSYN1_0197 102 LTIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEA 199
************************************************************************************************** PP
TIGR03265 199 lslaDrivvmnkgkieqvgtPeeiYeqPatkfvadfvGevnllkae.veedsrvrvgevelaveeel.aeagesvklavrPediklkaaekeenllka 294
ls++Drivvmn+g+i+q+gtPeeiY++P++++va+f+G+ n+++ ed++++ +++ ++ e+ +s+++++rPedi++k + ++++++a
MMSYN1_0197 200 LSMSDRIVVMNQGTIQQIGTPEEIYNEPENAWVANFIGSSNIITDGiFLEDNKIKFDGKVFECIDTNfGENESSIDIIIRPEDIIIK--NPNNGFFNA 295
******************************************98751578999999999999866551556899***********96..78899**** PP
TIGR03265 295 rvedveflGavvrveleleelkgkalvadvsaeeve 330
+v +++f+G + v +e++++ + ++ + +++
MMSYN1_0197 296 KVIKTTFKGIHWEVVVETSKKR-QWIIHTINEYDID 330
*************999988776.5555555554444 PP
>> TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 353.0 0.1 4.3e-108 3.2e-106 1 324 [. 36 344 .. 36 349 .. 0.90
Alignments for each domain:
== domain 1 score: 353.0 bits; conditional E-value: 4.3e-108
TIGR01187 1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefakrkp 98
lLGpsG+Gktt+L+++ G ++++sG+il+++++++ +p +kr+ n++fqsyaLfPh+ v++nvafgL ++k++k+ i+ v+ ++ v le++ ++k+
MMSYN1_0197 36 LLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQFNTIFQSYALFPHLNVFDNVAFGLTIKKTKKDIIEREVMRQIRQVGLEGYENKKI 133
8************************************************************************************************* PP
TIGR01187 99 sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePanef 196
+lsGGq+qrva+ara+v kPk+LLlDep++aLD kLr+ mq+elk+lq+ +Git+++v hDqeeal+msdri+v+++G i+qig+peeiy+eP+n +
MMSYN1_0197 134 DELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEALSMSDRIVVMNQGTIQQIGTPEEIYNEPENAW 231
************************************************************************************************** PP
TIGR01187 197 varfiGeinvfeatvierkeeslvlagvegrelk.ikedlavekkqklqvvlrPekisieevaeansseavigevrditykGetlevavrledggkel 293
va+fiG++n++ + +++ ++ ++g ++ + i++++ e++ +++++rPe+i i++ + + ++ ++v++ t+kG +ev+v+ ++ +
MMSYN1_0197 232 VANFIGSSNIITDGIFLEDN-KIKFDG---KVFEcIDTNF-GENESSIDIIIRPEDIIIKNPN----NGFFNAKVIKTTFKGIHWEVVVETSKKRQ-W 319
*********98755543332.333444...4444055555.688999**********998543....3589********************97766.6 PP
TIGR01187 294 vsevlnedesekdlslgdkvlltweeasevv 324
+ +++ne +++++v ++w++a++ v
MMSYN1_0197 320 IIHTINEY------DIDQQVSIKWKPANVHV 344
66666654......56777777777777665 PP
>> TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 269.1 0.1 1e-82 7.4e-81 2 236 .. 7 241 .. 6 242 .. 0.99
Alignments for each domain:
== domain 1 score: 269.1 bits; conditional E-value: 1e-82
TIGR00968 2 lianvskrfGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGlei 99
++ nv+k++ ++l+ ++++vk+G++++llGpsG Gk+t+l++i G +kp+sG+il+e ++ + +++r+ +fq yalf+hl v+dn+afGl+i
MMSYN1_0197 7 ELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQFNTIFQSYALFPHLNVFDNVAFGLTI 104
5789********************************************************************************************** PP
TIGR00968 100 rkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealev 197
+k++k i + v + ++ v+le+++++ ++lsGGq+qrva+aral ++p+vllldep++ald k+rk +++ l++l +++ +t ++v+hdqeeal +
MMSYN1_0197 105 KKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEALSM 202
************************************************************************************************** PP
TIGR00968 198 adrivvlekGkieqvgsaeevydepatafvleflGevnv 236
+drivv+++G i+q+g++ee+y+ep +a+v +f+G+ n+
MMSYN1_0197 203 SDRIVVMNQGTIQQIGTPEEIYNEPENAWVANFIGSSNI 241
***********************************9885 PP
>> TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 268.0 0.0 3.8e-82 2.8e-80 13 321 .. 10 311 .. 4 344 .. 0.88
Alignments for each domain:
== domain 1 score: 268.0 bits; conditional E-value: 3.8e-82
TIGR03258 13 slrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrarkq 110
+++ y+++vvl+ +s++++ Ge ++llG+sG+Gktt+l+++ G k++ G +l d++l +p kr++ ++q yalfphl+v++nvafGl +k
MMSYN1_0197 10 NVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQFNTIFQSYALFPHLNVFDNVAFGLTIKKT 107
56678********************************************************************************************* PP
TIGR03258 111 skaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvlad 208
k i++ v ++ v+l + ++ +lsGGq+qrva+aralv++p+vllldep++ald +lr++++eelk+l +++ +t ++v+hd++eal ++d
MMSYN1_0197 108 KKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDI-GITFIMVSHDQEEALSMSD 204
***************************************************************************998.59***************** PP
TIGR03258 209 killmkeGslialGetralydapadrfvaeylGaanllsaivlgiteapglvdvscggavirafsdgshdvrdkl.lcvrperlalrprslyenrlna 305
+i +m++G++ + G+++++y++p + +va+++G++n+++ + + + + g v+ + + + +rpe + ++ + ++ +na
MMSYN1_0197 205 RIVVMNQGTIQQIGTPEEIYNEPENAWVANFIGSSNIITDGI-FLEDN----KIKFDGKVFECIDTNFGENESSIdIIIRPEDIIIK--NPNNGFFNA 295
*************************************99877.33333....355667777666655555555542679****9999..555666666 PP
TIGR03258 306 tlasvewqGdllsllv 321
+ ++G +++v
MMSYN1_0197 296 KVIKTTFKGIHWEVVV 311
6666666665554444 PP
>> TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 225.6 1.8 3e-69 2.2e-67 5 237 .. 17 243 .. 13 264 .. 0.96
2 ? -2.9 0.0 8.7 6.4e+02 214 230 .. 280 297 .. 271 320 .. 0.73
Alignments for each domain:
== domain 1 score: 225.6 bits; conditional E-value: 3e-69
TIGR01186 5 lklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkid 102
+++ ++ ++++++eGe+i ++G+sG+Gk+t+++++ P +G+il + ++++ i + +++ ++q++alfPh + dn+++gl ++k +
MMSYN1_0197 17 GQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIP------INKRQFNTIFQSYALFPHLNVFDNVAFGLTIKKTK 108
5677899******************************************99998764......467899***************************** PP
TIGR01186 103 eqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdri 200
++ ++ + +++v+le+ye++ delsGG++qrv +aral ++P++ll+de+++ald +r+ +q+el++lq+++ t ++++hd +eal ++dri
MMSYN1_0197 109 KDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEALSMSDRI 206
**99999******************************************************************************************* PP
TIGR01186 201 vilkaGeivqvGtPdeilrnPaneyveefiekvdlsq 237
v++++G i q+GtP+ei ++P n +v +fi+ +++
MMSYN1_0197 207 VVMNQGTIQQIGTPEEIYNEPENAWVANFIGSSNIIT 243
*******************************999875 PP
== domain 2 score: -2.9 bits; conditional E-value: 8.7
TIGR01186 214 Pde.ilrnPaneyveefi 230
P++ i++nP n + + +
MMSYN1_0197 280 PEDiIIKNPNNGFFNAKV 297
666257999999876554 PP
>> TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 191.3 1.4 7.8e-59 5.8e-57 32 271 .. 14 242 .. 7 255 .. 0.92
Alignments for each domain:
== domain 1 score: 191.3 bits; conditional E-value: 7.8e-59
TIGR03415 32 dktGlvlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvaf 129
+ G+v+ +++s++v+eGe + l+G sG Gk+++l+ + g + G++l +d++ + ++ +++ +fq +al+P ++v +nvaf
MMSYN1_0197 14 EYDGQVV-LKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNL--IPIPIN--------KRQFNTIFQSYALFPHLNVFDNVAF 100
5567766.799**************************************99988753..333333........3455679****************** PP
TIGR03415 130 GlelsGvakaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdlde 227
Gl ++ k+ ++v +q++ vgl+ +++kk++elsGG +qrv +ara+ ++ ++ll+deP++ald +r+ +q+el +lq+ + t ++vshd +e
MMSYN1_0197 101 GLTIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEE 198
************************************************************************************************** PP
TIGR03415 228 alklGnriaimegGrivqlgtpeeivlkPaneyvadfvahtnPl 271
al + +ri +m++G i q+gtpeei +P+n++va+f+ n +
MMSYN1_0197 199 ALSMSDRIVVMNQGTIQQIGTPEEIYNEPENAWVANFIGSSNII 242
**************************************998866 PP
>> TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 183.8 0.2 1.1e-56 8.3e-55 1 198 [. 21 219 .. 21 229 .. 0.91
Alignments for each domain:
== domain 1 score: 183.8 bits; conditional E-value: 1.1e-56
TIGR01184 1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegke.itepgpdrm..vvfqnysllpwltvrenialavdavlrdlskserreiv 95
lk++++++k+gefi+l+g sgcgk+t+l +i g +kp sg + +e k+ i p +r +fq y+l+p l v +n+a+ + +++++ er+ v
MMSYN1_0197 21 LKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNlIPIPINKRQfnTIFQSYALFPHLNVFDNVAFGLTIKKTKKDIIERE--V 116
789******************************************99835678777753379****************99876555554444444..5 PP
TIGR01184 96 eehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpa 193
+i vgl+ ++k++++lsgg kqrvaiaral ++pk+llldep+ ald r+ +qe+l ++ ++ +t +mv+hd +eal +sdr+v++ +g
MMSYN1_0197 117 MRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEALSMSDRIVVMNQGTI 214
57899********************************************************************************************* PP
TIGR01184 194 akige 198
+ig
MMSYN1_0197 215 QQIGT 219
***97 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 179.6 0.0 3.3e-55 2.4e-53 16 229 .. 24 233 .. 10 290 .. 0.88
Alignments for each domain:
== domain 1 score: 179.6 bits; conditional E-value: 3.3e-55
TIGR02142 16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerrisee 113
++++++ + ++l G sG+Gkt+++++i G ++p++gei ++ ++ i +p++kR++ +Fq LFpHl+v +n+ +Gl+ ++++ i+ e
MMSYN1_0197 24 ISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFED------KNLIPIPINKRQFNTIFQSYALFPHLNVFDNVAFGLTIKKTKKDIIERE 115
7888888899*************************99886555......56699*******************************9999998666655 PP
TIGR02142 114 kv..ielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGr 209
+ i+ +g+e +++ +LsGG kqRvai+RAl+ +P++Ll+DeP+aaLD k +k + L+rl++++ i ++vsH+ +e + ++dr+vv+++G
MMSYN1_0197 116 VMrqIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEALSMSDRIVVMNQGT 213
442256789***************************************************************************************** PP
TIGR02142 210 vkaagkleevlaskdlslle 229
++ +g++ee+ ++++ +++
MMSYN1_0197 214 IQQIGTPEEIYNEPENAWVA 233
************99888654 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 172.7 0.2 2.5e-53 1.8e-51 2 211 .. 7 218 .. 6 220 .. 0.93
Alignments for each domain:
== domain 1 score: 172.7 bits; conditional E-value: 2.5e-53
TIGR01277 2 klddviyeykhlpl..efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkp 97
+l +v+ ey+ + + +++v++Ge +++lG+sG Gk+t+l++i G +p sGei +dk+ + + +r + +fq lf+hl v +n+++Gl
MMSYN1_0197 7 ELRNVTKEYDGQVVlkGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQFNTIFQSYALFPHLNVFDNVAFGLTI 104
677888777765441257999**************************************************************************986 PP
TIGR01277 98 .glklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaa 194
k + +++e ++++ rqvG++ y ++ +elsGGq+qrva+ar lv + +llldep++ald klr+ m +k+l ++ +t ++v+h+ ++a +
MMSYN1_0197 105 kKTKKDIIEREVMRQI-RQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEALS 201
1467778888888776.89******************************************************************************* PP
TIGR01277 195 iasqvvvvedGkikvls 211
+ +++vv+++G i++++
MMSYN1_0197 202 MSDRIVVMNQGTIQQIG 218
*************9875 PP
>> TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 173.1 0.7 2.5e-53 1.8e-51 2 228 .. 7 228 .. 6 235 .. 0.94
2 ? -1.9 0.0 5.6 4.2e+02 69 95 .. 271 297 .. 257 326 .. 0.79
Alignments for each domain:
== domain 1 score: 173.1 bits; conditional E-value: 2.5e-53
TIGR04520 2 evenvsfkYeeeekkalkdvsleiekgefvaiiGhNGsGKsTlakllnglllpeegkvlvdgletleeenlweirkkvglvfqnPdnqlvgatveedv 99
e++nv+ +Y+ + +lk++s+++++gef++++G G+GK+T+ k++ g +p++g++l ++ + l + +++ +fq + v ++v
MMSYN1_0197 7 ELRNVTKEYDG--QVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKN-LI--PIPINKRQFNTIFQSY-ALFPHLNVFDNV 98
7899*****88..99*********************************************9988.33..34444788999***85.679999****** PP
TIGR04520 100 aFglENlgvpreeikkrveealkkvgleefrkkepkkLSGGqkqrvaiagvlalepeiiilDEatsmLDpkgrkevletvkklkkeekltvisitHdl 197
aFgl ++ +++ i++ v + +++vgle +++k+ +LSGGqkqrvaia +l ++p++++lDE+ + LD k rk++ e +k+l+++ ++t i+++Hd
MMSYN1_0197 99 AFGLTIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQ 196
************************************************************************************************** PP
TIGR04520 198 eeav.eadrvivlekgkivaegtpkeifskke 228
eea+ ++dr++v+++g+i + gtp+ei+++ e
MMSYN1_0197 197 EEALsMSDRIVVMNQGTIQQIGTPEEIYNEPE 228
**86369*********************9876 PP
== domain 2 score: -1.9 bits; conditional E-value: 5.6
TIGR04520 69 eenlweirkkvglvfqnPdnqlvgatv 95
e+++ i + ++ +nP+n + +a v
MMSYN1_0197 271 ESSIDIIIRPEDIIIKNPNNGFFNAKV 297
555555666667899999999988777 PP
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 172.1 0.5 4.1e-53 3e-51 1 236 [. 5 226 .. 5 230 .. 0.94
Alignments for each domain:
== domain 1 score: 172.1 bits; conditional E-value: 4.1e-53
TIGR02315 1 llevenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvle 98
+le++n++k+y+ g+ +lk +++++k+Ge+++++G+sG Gk+t+l+ i + ++++sg+il+e+k++ + +++ ifq y+l +l+v++
MMSYN1_0197 5 ILELRNVTKEYD-GQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLI-----PIPINKRQFNTIFQSYALFPHLNVFD 96
6899*******9.99**************************************************99.....5666789999**************** PP
TIGR02315 99 nvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekg 196
nv g l+ k+t k +++ ++ ++ +++vgl+ + +k+ d+LsGGq+qRvaiaRal+ +pk++l DEP+a+LD k k++ + lkr+ ++ g
MMSYN1_0197 97 NVAFG-LTIKKTKKDIIE-------REVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIG 186
**998.666777666653.......4678899****************************************************************** PP
TIGR02315 197 itvivnlHqvdlakkyadrivglkageivfdgasseldde 236
it i+ H+ + a + +driv +++g+i g+++e+ +e
MMSYN1_0197 187 ITFIMVSHDQEEALSMSDRIVVMNQGTIQQIGTPEEIYNE 226
**********************************999876 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 171.2 0.6 7.5e-53 5.5e-51 1 213 [. 5 212 .. 5 213 .. 0.96
Alignments for each domain:
== domain 1 score: 171.2 bits; conditional E-value: 7.5e-53
TIGR02673 1 iielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvle 98
i+el++v+key g +Lk +s+++++gef+ l G+sG Gktt+lk++ g +kp++Ge+ ++ +++ +p +r+ ++fq + l+++ +v++
MMSYN1_0197 5 ILELRNVTKEYD-GQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIP-----IPINKRQFNTIFQSYALFPHLNVFD 96
689********6.5569**********************************************99975.....78899******************** PP
TIGR02673 99 nvalalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnk.rGttvivath 195
nva+ l+++++k++ i+++v + +++vgle +++ +elsgG +qRvaiaRa+v kP++ll DeP lD +l + + + lk+l++ G+t i+++h
MMSYN1_0197 97 NVAFGLTIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQdIGITFIMVSH 194
************************************************************************************98636********* PP
TIGR02673 196 deelvervkkrvlelekg 213
d+e + +++ r++ +++g
MMSYN1_0197 195 DQEEALSMSDRIVVMNQG 212
**************9998 PP
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 166.6 1.0 2e-51 1.4e-49 19 237 .. 19 228 .. 6 261 .. 0.91
Alignments for each domain:
== domain 1 score: 166.6 bits; conditional E-value: 2e-51
TIGR04521 19 kalkdvsleiekgefvaiiGhtGsGKstliqhlngLlkptsGeveidgleikakkkkkkklkelrkkvglvFQfpekQLFee.tvlkdiafgpknlgl 115
lk +s+++++gef++++G +G GK+t+++ + g kp+sGe+ ++++++ + +++ +FQ + LF + +v++++afg + ++
MMSYN1_0197 19 VVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIP-------IPINKRQFNTIFQ--SYALFPHlNVFDNVAFGLTIKKT 107
579***********************************************944.......3344568889999..588996539************** PP
TIGR04521 116 seeeveervkealelvgldeellerspfeLSGGqkrrvAiagvLamepevLvlDEptaGLDpkgrkellellkklkkekgktvilvtHsmedvaelad 213
+++ +e++v + +++vgl+ + +++ eLSGGqk+rvAia L+m+p+vL+lDEp+a LD k rk++ e lk+l+++ g+t i+v+H+ e++++++d
MMSYN1_0197 108 KKDIIEREVMRQIRQVGLE-GYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEALSMSD 204
******************6.68889999********************************************************************** PP
TIGR04521 214 rvivlkkGkvvldgtpeevfkeee 237
r++v+++G++ + gtpee+++e e
MMSYN1_0197 205 RIVVMNQGTIQQIGTPEEIYNEPE 228
********************9876 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 160.2 1.3 1.5e-49 1.1e-47 1 204 [. 8 207 .. 8 209 .. 0.94
Alignments for each domain:
== domain 1 score: 160.2 bits; conditional E-value: 1.5e-49
TIGR03608 1 lkniskkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenle 98
l+n++k++ +++lk +s+++++Ge+++++G sG+GK+t+L i+g +k++sg++++e+k+ + + + ++ +Fq +aL + +v +n+
MMSYN1_0197 8 LRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIP------IPINKRQFNTIFQSYALFPHLNVFDNVA 99
689********************************************************99554......5677888899****************** PP
TIGR03608 99 lalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkee.gktiiivtHdpe 195
+l++kk++k e+++++ +++vgle +++kki elsgG+kqRva+ar+l+ +++++l DEP ++LD k r+++ e lk l+++ g t i+v Hd+e
MMSYN1_0197 100 FGLTIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDiGITFIMVSHDQE 197
********************************************************************************99765499********86 PP
TIGR03608 196 .vaekadrvi 204
+++dr++
MMSYN1_0197 198 eALSMSDRIV 207
2667888887 PP
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 156.5 0.5 2.4e-48 1.7e-46 18 219 .. 18 214 .. 5 215 .. 0.93
Alignments for each domain:
== domain 1 score: 156.5 bits; conditional E-value: 2.4e-48
TIGR02982 18 kqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsa 115
+ vl+ i++++++ge + l GpsG+Gktt+l +igg ++ +Ge+ + +k+l ++ + +r+ ifq++ l+ l + +nv ++l +k++ ++
MMSYN1_0197 18 QVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPIN-----KRQFNTIFQSYALFPHLNVFDNVAFGLTIKKT-KK 109
4699************************************************999876.....57899************************998.55 PP
TIGR02982 116 keakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdn.rildvadriv 212
+ + ++ +++vgle ++k ++lsgGqkqrvaiaralv +Pk++l deP aald k +++ e l++l ++ g t ++v hd+ l ++driv
MMSYN1_0197 110 DIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQeEALSMSDRIV 207
66677788899***************************************************************************7368******** PP
TIGR02982 213 kmedGkl 219
m++G++
MMSYN1_0197 208 VMNQGTI 214
*****98 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 155.4 0.4 5e-48 3.7e-46 2 244 .. 6 237 .. 5 240 .. 0.92
Alignments for each domain:
== domain 1 score: 155.4 bits; conditional E-value: 5e-48
TIGR00972 2 levknlklfygekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msi 98
le +n++ y + +lk +++++k+ + ++l+GpsGcGk+t+l+ + ++ + +G++l+e+k+++ +++ + +fq + fp +
MMSYN1_0197 6 LELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPN-----SGEILFEDKNLIPIPINKRQ----FNTIFQSYALFPhLNV 94
7899*****************************************98766655.....9**********999888655....5679********889* PP
TIGR00972 99 ydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..y 194
+dnva+gl +k+ ++k+ +++ v +++++++l +k+ +LsGGq+qr++iaral ++P+vlLlDeP +aLD + ++++e ++ L+++ +
MMSYN1_0197 95 FDNVAFGLTIKK-TKKDIIEREVMRQIRQVGLEGY----ENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDigI 187
***********8.779999*************854....4455568************************************************9777 PP
TIGR00972 195 tivivthnmqqaarvsdktaffleGelveegeteqifekpkekktedyis 244
t ++v h+ + a +sd+++++ +G++ g++e+i+++p+++ +++i
MMSYN1_0197 188 TFIMVSHDQEEALSMSDRIVVMNQGTIQQIGTPEEIYNEPENAWVANFIG 237
99****************************************99999985 PP
>> TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 150.4 1.6 1.6e-46 1.2e-44 2 247 .. 7 236 .. 6 242 .. 0.93
Alignments for each domain:
== domain 1 score: 150.4 bits; conditional E-value: 1.6e-46
TIGR03005 2 risdvtkrfgeltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlf 99
++++vtk ++ vl+g++++v++Ge ++l+GpsG Gk+til+i+ ++ + G+i e ++l ++ +++ + +fqs+ lf
MMSYN1_0197 7 ELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIP--------INKR-------QFNTIFQSYALF 89
6899**************************************************9999777666555........4444.......34578******* PP
TIGR03005 100 phktvldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetd 197
ph v+dnv+ + +k ++ e+ ++ + vGl ++ +lsGGqkqrvaiaral ++pkvll+de+ +ald +l + + + l+rl ++
MMSYN1_0197 90 PHLNVFDNVAF-GLTIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIG 186
********987.588899999999************************************************************************** PP
TIGR03005 198 ltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpkeertrefl 247
+t+++v+h+ a ++dr++ +++G i + G p+ei+++p++ +f+
MMSYN1_0197 187 ITFIMVSHDQEEALSMSDRIVVMNQGTIQQIGTPEEIYNEPENAWVANFI 236
*****************************************998888776 PP
>> TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 147.5 0.6 1.3e-45 9.5e-44 1 220 [. 5 215 .. 5 216 .. 0.93
Alignments for each domain:
== domain 1 score: 147.5 bits; conditional E-value: 1.3e-45
TIGR02211 1 llkcenltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladf 98
+l+ +n+tk+y vlkg+s+++++ge ++++G sG Gk+t+l ++gg +kp sGe+l++ k+l + n+ +++ i+q + l++ +
MMSYN1_0197 5 ILELRNVTKEYDG----QVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINK------RQFNTIFQSYALFPHL 92
5777888888864....369*************************************************9998776......57899*********** PP
TIGR02211 99 talenvamPlliskkskkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntall 196
++++nva+ l i+k++k +++ ++ +++vgle nkk elsGG++qrvaiaralv kPk++l deP + ld k k++ e l++l+++ +++++
MMSYN1_0197 93 NVFDNVAFGLTIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFI 190
************************************************************************************************** PP
TIGR02211 197 vvthdlelakkl.drvlelkdgkla 220
+v+hd+e a + dr + +++g+++
MMSYN1_0197 191 MVSHDQEEALSMsDRIVVMNQGTIQ 215
*****99887662677889999875 PP
>> TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 145.5 0.1 6.8e-45 5e-43 1 213 [. 13 225 .. 13 273 .. 0.95
Alignments for each domain:
== domain 1 score: 145.5 bits; conditional E-value: 6.8e-45
TIGR01188 1 KkygefkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpk 98
K+y+ + ++g++++v+ege + lLGP G GKtt++k++ + kP+sG+ +++ p + R+ ++q++++ +L +n+ + + +k
MMSYN1_0197 13 KEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQ-FNTIFQSYALFPHLNVFDNVAFGLTIKKTKK 109
89**********************************************************998765.7889*************************** PP
TIGR01188 99 keaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrva 195
+++e+ + + + +v l +kk+ ++sgG+++r+ +a++l+ +P+vl LDEP LD++ r+++ + ++ l+++ g+t ++ +h+ eea +++dr+
MMSYN1_0197 110 DIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDiGITFIMVSHDQEEALSMSDRIV 207
************************************************************************************************** PP
TIGR01188 196 iidkGkiiaedtpeeLKe 213
++++G+i ++tpee+ +
MMSYN1_0197 208 VMNQGTIQQIGTPEEIYN 225
**************9876 PP
>> TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 144.1 1.0 1.3e-44 9.5e-43 2 227 .. 6 228 .. 5 239 .. 0.95
Alignments for each domain:
== domain 1 score: 144.1 bits; conditional E-value: 1.3e-44
TIGR04406 2 lkaenlaksykkrkvvkdvslevksgeivGllGPnGaGkttsfymivGlvkadaGkvllddeditklplherarlGigylpqeasifrkltveenlka 99
l+ +n++k+y+ + v+k++s++vk+ge + llGP G Gktt + +i G k+++G++l++d+++ +p+++r + q ++f +l v +n+
MMSYN1_0197 6 LELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQFNT---IFQSYALFPHLNVFDNVAF 100
7889*******************************************************************98665...579**************** PP
TIGR04406 100 vlelredldkeereekleelleeleiahlrekkaaslsGGerrrveiaralaaePkfilldePfagvdPiavsdikklikllke.rgiGvlitdhnvr 196
l +++ +k+ +e+++ ++++ ++ ++kk +lsGG+++rv iaral+++Pk++lldeP+a++d + +++ +k l++ gi ++ h+
MMSYN1_0197 101 GLTIKKT-KKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQdIGITFIMVSHDQE 197
**99996.99999*******************************************************999999***999997526888899****** PP
TIGR04406 197 etldivdrayivseGkvlaeGsaeeivanek 227
e+l++ dr ++++G++ + G++eei ++++
MMSYN1_0197 198 EALSMSDRIVVMNQGTIQQIGTPEEIYNEPE 228
**************************99876 PP
>> TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 142.9 0.0 3.3e-44 2.4e-42 2 225 .. 6 229 .. 5 237 .. 0.96
Alignments for each domain:
== domain 1 score: 142.9 bits; conditional E-value: 3.3e-44
TIGR03864 2 leveglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryha 99
le+++++++y + +l+++s++v++gef+ LLGp G Gk+t+++++ + + ++gei ++l p + +++ +fq+ +l l v n+ +
MMSYN1_0197 6 LELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINK-RQFNTIFQSYALFPHLNVFDNVAFGL 102
7899********************************************************99999998875.899*********************** PP
TIGR03864 100 aLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvde.v 196
+++ + e++++++++++gl+ +++k+ eL+GG+++rv iaral+ +Pk+LLlDe+ + LD++ r++++ee+++l ++ g++ + h +e +
MMSYN1_0197 103 TIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEaL 200
********************************************************************************************999945 PP
TIGR03864 197 eaedrlvvlhkGkvlaqGaaaelaaeada 225
+ +dr+vv+++G +++ G+++e+ +e +
MMSYN1_0197 201 SMSDRIVVMNQGTIQQIGTPEEIYNEPEN 229
899********************987664 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 143.3 1.2 2.5e-44 1.9e-42 1 220 [. 6 224 .. 6 233 .. 0.94
Alignments for each domain:
== domain 1 score: 143.3 bits; conditional E-value: 2.5e-44
TIGR03410 1 levenlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlel 98
le++n++ Y+ vl+++s++v++ge +++lG g Gktt+lk + g +k +sGei +e++++ + ++r + + q +fp+l v +n+
MMSYN1_0197 6 LELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQFNT---IFQSYALFPHLNVFDNVAF 100
7899*************************************************************99999987665...57***************** PP
TIGR03410 99 glealkkkekkipeeiyelFPv..lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldf 194
gl+ +k+k+ i+ e++ l+ ++++ +LsGGq+q +aiaRaLv++Pk+llLDeP+ + + k +++ +k+l+++ +++ ++v + +
MMSYN1_0197 101 GLTIKKTKKDIIEREVMRQIRQvgLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEE 198
******998888888887664324899*********************************************************************** PP
TIGR03410 195 aleladrylvlerGevvaegekeeld 220
al+++dr++v+++G++ + g+ ee+
MMSYN1_0197 199 ALSMSDRIVVMNQGTIQQIGTPEEIY 224
****************9999887765 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 140.1 1.0 2.5e-43 1.8e-41 466 691 .. 6 226 .. 2 230 .. 0.85
Alignments for each domain:
== domain 1 score: 140.1 bits; conditional E-value: 2.5e-43
TIGR03375 466 ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLf.yGtlrdNia 562
+el+nv+ +Y + + +Lk +s+++k Ge + ++G G+GK+t+lk++ g +p++G++l+++ ++ i +r+++ + q +Lf + ++ dN+a
MMSYN1_0197 6 LELRNVTKEYDG--QVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPIN--KRQFNTIFQSYALFpHLNVFDNVA 99
6899******65..689*********************************************9888766654..78999*********5579****** PP
TIGR03375 563 lgap.aaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvl 657
+g + +++ ++e+ + ++ + +G++ + ++LSgGQ+q va+aRal+++p++llLDEP +alD + +++ e+Lk+l + + T+++
MMSYN1_0197 100 FGLTiKKTKK---DIIEREVMRQIRQVGLEGYEN---KKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQdiGITFIM 191
9976322223...333444444444444455553...44578***********************************************98889**** PP
TIGR03375 658 vtH.rtslLelvdriivldkGrivadGpkdevlea 691
v+H +++ L++ dri+v+++G+i G+ +e+ ++
MMSYN1_0197 192 VSHdQEEALSMSDRIVVMNQGTIQQIGTPEEIYNE 226
***55689*******************99999765 PP
>> TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 140.4 0.0 2.4e-43 1.7e-41 453 673 .. 7 225 .. 3 233 .. 0.91
Alignments for each domain:
== domain 1 score: 140.4 bits; conditional E-value: 2.4e-43
TIGR03797 453 evdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsg.sileniag 549
e+++vt +Y dg++vL+ +s+++++Gef+++ G+SG+GK t+l+++ g +kP+sG++l++ ++l + ++ +rq+ +++Q l++ ++++n+a
MMSYN1_0197 7 ELRNVTKEY--DGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPIN--KRQFNTIFQSYALFPHlNVFDNVAF 100
788999999..9*****************************************************998887..6************99758*****97 PP
TIGR03797 550 gasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklk....vtRiviAH 643
g lt+++ + + + + i++ gl + ++ + lSGGQ+QR+ iAralv kP++ll+DE ALD + ++ e l++l+ +t i++ H
MMSYN1_0197 101 G--LTIKKTKKDIIEREVMRQIRQV--GLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQqdigITFIMVSH 194
6..7778888888888888999995..8999999*************************************************99755558******* PP
TIGR03797 644 RL.STirnadrilvleeGrvveqGsyeeLla 673
+ +dri+v+++G + + G+ ee+ +
MMSYN1_0197 195 DQeEALSMSDRIVVMNQGTIQQIGTPEEIYN 225
76268899*******************9876 PP
>> TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 137.5 0.1 1.7e-42 1.2e-40 19 244 .. 19 239 .. 5 257 .. 0.94
Alignments for each domain:
== domain 1 score: 137.5 bits; conditional E-value: 1.7e-42
TIGR02314 19 kaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkek 116
l+ +s+ v +g+ + ++g sg gk+t+++ + +kp sg+++ + k+l + ++rq ifq + l+ vf+nva+ l +++t k+
MMSYN1_0197 19 VVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPI-----PINKRQFNTIFQSYALFPHLNVFDNVAFGLTIKKTKKDI 111
36999*********************************************9876.....5679*********************************** PP
TIGR02314 117 ikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavi 214
i+r v + vgl ++ +lsggqkqrvaiaral +pkvll de +ald +++ e lk +++ +g+t ++++h+ + ++ d++ v+
MMSYN1_0197 112 IEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEALSMSDRIVVM 209
************************************************************************************************** PP
TIGR02314 215 dkgeliekgtvseifshpktelakkfirst 244
++g + + gt ei+ +p+ +fi s+
MMSYN1_0197 210 NQGTIQQIGTPEEIYNEPENAWVANFIGSS 239
**************************9886 PP
>> TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 132.5 1.4 5.9e-41 4.4e-39 22 229 .. 16 214 .. 5 226 .. 0.90
Alignments for each domain:
== domain 1 score: 132.5 bits; conditional E-value: 5.9e-41
TIGR02769 22 qrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhlt 119
+ + vl+++s++++eGe ++llG sG+Gk+t+ +++ G +kP++Ge+ f+ ++l + + +r+ +fq a+ p+ v ++ l ++
MMSYN1_0197 16 DGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPIN-----KRQFNTIFQS--YALFPHLNVFDNVAFGLT-IK 105
5578**************************************************998765.....577889**95..488999999999999996.56 PP
TIGR02769 120 sldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkf 217
+ ++ ++ +++ +++v+l+ + + + +lsGGq qr++iaral ++Pk+++lde ++ ld+ l+ ++ e lk+l+q+ G+++++++hd + + ++
MMSYN1_0197 106 KTKKDIIEREVMRQIRQVGLEGYENK-KIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEALSM 202
667777788899999*****987755.5689******************************************************************* PP
TIGR02769 218 aqrvlvldeGqi 229
++r++v+++G i
MMSYN1_0197 203 SDRIVVMNQGTI 214
**********87 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 129.6 0.1 3e-40 2.2e-38 4 188 .. 17 197 .. 15 199 .. 0.92
Alignments for each domain:
== domain 1 score: 129.6 bits; conditional E-value: 3e-40
TIGR01166 4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlf.aadvdedvafgplnlGls 100
+ vlkg++++v++ge ++llG+ G+Gk+t+l+ + G+ +P+sG++l++ ++l + +++ ++++q lf +v+++vafg+ +
MMSYN1_0197 17 GQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLI----PIPINKRQFNTIFQSY--ALFpHLNVFDNVAFGLTIKKTK 108
4559*******************************************9998875....5666788999***975..5663569*************** PP
TIGR01166 101 eaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklree.Gktvvisthdvd 188
++ +er v +++v+++g+e++ ++ lsgG+k+rvaia a++++p+vllldeP a ld + ++ + e l++l+++ G t ++ +hd +
MMSYN1_0197 109 KDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDiGITFIMVSHDQE 197
*************************************************************************8654**********75 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 130.1 0.5 3.3e-40 2.4e-38 2 234 .. 5 228 .. 4 237 .. 0.93
Alignments for each domain:
== domain 1 score: 130.1 bits; conditional E-value: 3.3e-40
TIGR03411 2 iLevedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenle 99
iLe+++v+ ++dg l+ +s++v+ege+ +++Gp G Gktt+l +i G +p++G++lf++k+l+ ++ ++ fq+ ++f +l v++n+
MMSYN1_0197 5 ILELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINK---RQFNTIFQSYALFPHLNVFDNVA 99
89***************************************************************9988655...556667***************** PP
TIGR03411 100 lalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelaker..sv 195
l+ +k+ +++ ++++ + ++++gLe ++kk +Ls Gqkq++ i+ lv +pk+lllDeP+a + + ++++ e lk+l+++ +
MMSYN1_0197 100 FGLTIKKTKKDII--------EREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIgiTF 189
**99998877776........5677788899************************************************************9862267 PP
TIGR03411 196 vvvehDmefvrelaekvtvlheGkvlaeGsldevqadek 234
++v hD e ++++++ v+++G++ G+ +e+ ++++
MMSYN1_0197 190 IMVSHDQEEALSMSDRIVVMNQGTIQQIGTPEEIYNEPE 228
99*******************************999875 PP
>> TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.9 0.0 1.4e-39 1e-37 332 556 .. 6 224 .. 3 229 .. 0.88
Alignments for each domain:
== domain 1 score: 127.9 bits; conditional E-value: 1.4e-39
TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFdd.tiaenva 428
+e+rnvt +y g + +l++is++v++Ge + l G+sG Gk+t+++++ +p+sGeil+++++l + ++ +rq+ + q LF +++nva
MMSYN1_0197 6 LELRNVTKEYDG--QVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPIN--KRQFNTIFQSYALFPHlNVFDNVA 99
799*******76..579*************************************************999887..69************7648****** PP
TIGR02203 429 YgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkg..Rttlv 524
+g + + +++++ e + +++ + Gl+ ++ +LsGGq+qR+aiaRal+ +L+LDe +aLD +++q+ L+rl+++ t ++
MMSYN1_0197 100 FGLTIKKTKKDIIEREVMRQIR------QVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDigITFIM 191
**99555555554433333333......3488888889999************************************************963269999 PP
TIGR02203 525 iahRL.stiekaDrivvlddGkiverGtheeLl 556
++h + +Drivv+++G i Gt ee+
MMSYN1_0197 192 VSHDQeEALSMSDRIVVMNQGTIQQIGTPEEIY 224
***7526899******************98875 PP
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 122.5 0.1 5.6e-38 4.1e-36 3 224 .. 22 234 .. 20 240 .. 0.93
2 ? 1.0 0.0 0.74 55 52 114 .. 269 331 .. 239 337 .. 0.68
Alignments for each domain:
== domain 1 score: 122.5 bits; conditional E-value: 5.6e-38
TIGR02770 3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkaleklskqak 100
+++++++k+g+ ++l+G sG+Gk++ il++++ + sGeil+++k+l ++ + +r++ +i+q+ a+ P l++ +++ l +++ ++ +
MMSYN1_0197 22 KGISFNVKEGEFITLLGPSGCGKTT----ILKIIGGSQKPNSGEILFEDKNLIPIPINKRQFNTIFQS--YALFPHLNVFDNVAFGLTIKKTKKDIIE 113
789********************86....6777777777889*************************8..6999**********99999999999999 PP
TIGR02770 101 elivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevav 198
+++++++vgLe e +k elsGG qRv ia al++++ +l+ DeP ++lDv+ ++++ ++l++l+++ g++ ++++hD + d ++v
MMSYN1_0197 114 REVMRQIRQVGLEGYE---NKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEALSMSDRIVV 208
99***********766...466789************************************************************************* PP
TIGR02770 199 mekGkivergtvkelfqePkhettrk 224
m++G i gt++e+++eP+++ + +
MMSYN1_0197 209 MNQGTIQQIGTPEEIYNEPENAWVAN 234
********************987665 PP
== domain 2 score: 1.0 bits; conditional E-value: 0.74
TIGR02770 52 kelaalalrgreialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLee 114
++ +++ ++ r +i++nP + f ik+ ++ +++ ++ i++++++ ++++
MMSYN1_0197 269 ENESSIDIIIRPEDIIIKNPNNGFFNAKVIKTTFKGIHWEVVVETSKKRQWIIHTINEYDIDQ 331
333344777778889********9999999998876555555555778888999988887776 PP
>> TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 123.8 2.0 2.6e-38 1.9e-36 1 204 [. 6 216 .. 6 229 .. 0.88
Alignments for each domain:
== domain 1 score: 123.8 bits; conditional E-value: 2.6e-38
TIGR03740 1 letknlskkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdl..kkiGsliesPalyenltarenlk.... 92
le +n++k++ q v++ +s++vk+ + +llGp G+Gk+t+lk++ G +++sGeil++++++ + ++ ++ +s al+ +l +n+
MMSYN1_0197 6 LELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPInkRQFNTIFQSYALFPHLNVFDNVAfglt 103
7899***********************************************************9876541167999****************861111 PP
TIGR03740 93 vrtlllglpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpek.Gitvilsshilsevel 189
++ + +++ e ++ ++ v+le e kk +++s G kqr+ ia al+ kPk+l+ldeP+ ld + ++e +k ++++ Git i+ sh e
MMSYN1_0197 104 IKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDiGITFIMVSHDQEEALS 201
4555555555666666789*********************************************999999988887776654**************** PP
TIGR03740 190 ladhiGiiseGklky 204
++d i ++++G+++
MMSYN1_0197 202 MSDRIVVMNQGTIQQ 216
***********9974 PP
>> TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.7 0.2 1.4e-12 1.1e-10 2 62 .. 7 65 .. 6 69 .. 0.95
2 ! 86.0 0.3 6.6e-27 4.9e-25 365 518 .. 77 226 .. 73 230 .. 0.92
Alignments for each domain:
== domain 1 score: 38.7 bits; conditional E-value: 1.4e-12
TIGR03269 2 evenltkkfdglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkiiyh 62
e+ n+tk++dg+ vlk is++++eGe + +lG sG+Gk+ +l+++ G ++ p+sG+i+++
MMSYN1_0197 7 ELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQK--PNSGEILFE 65
789******************************************99887..******985 PP
== domain 2 score: 86.0 bits; conditional E-value: 6.6e-27
TIGR03269 365 kyiGllhqeyalyphrtvlenlteaiglel.pdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpi 461
+ + ++q yal+ph +v++n++ ++++ +++ +r + +++vG++ + k+i dels G++ rva+a+ l+ +p++++ldep ++d
MMSYN1_0197 77 RQFNTIFQSYALFPHLNVFDNVAFGLTIKKtKKDIIEREVMRQIRQVGLEGYENKKI-----DELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVK 169
566789****************999999751568899999999******98886655.....9*********************************** PP
TIGR03269 462 tkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeivee 518
+++++e + + +++++ tf++vshd + l++ dr+ +m +G i +iG peei +e
MMSYN1_0197 170 LRKTMQEELKRLQQDIGITFIMVSHDQEEALSMSDRIVVMNQGTIQQIGTPEEIYNE 226
*****************************************************9865 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 123.9 0.0 3e-38 2.2e-36 321 529 .] 5 209 .. 1 209 [. 0.87
Alignments for each domain:
== domain 1 score: 123.9 bits; conditional E-value: 3e-38
TIGR02857 321 slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenir 417
lel+nv+ y g+ +lk++s++v+ ge + l+G+SG+GK+t+lk++ g +p++G+il ++++l + + ++q + Q+ +lf++ v +n++
MMSYN1_0197 5 ILELRNVTKEYDGQV-VLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPIN--KRQFNTIFQSYALFPHlNVFDNVA 99
5899***********.*****************************************************977..88999999*999987648****** PP
TIGR02857 418 larkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelae..grtvllv 513
++ +++ k+ +er + ++ + +g+ ++ +LSgGq+qR+a+Aral+ + ++lllDEP a+LD + ++++e+l++l + g t ++v
MMSYN1_0197 100 FGLTIKKTK--KDIIEREVMRQIRQVGLEGY---ENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQdiGITFIMV 192
998877766..66666666666555544555...4567788**********************************************9644789**** PP
TIGR02857 514 aHrlalaela.dkivvl 529
+H+++ a + d+ivv+
MMSYN1_0197 193 SHDQEEALSMsDRIVVM 209
**998765542788876 PP
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 121.7 0.0 1.2e-37 8.6e-36 343 563 .. 11 225 .. 3 230 .. 0.83
Alignments for each domain:
== domain 1 score: 121.7 bits; conditional E-value: 1.2e-37
TIGR02204 343 vkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaa.svleniryGr. 438
v+ +y q +l+g++++v++Ge + l GPsG Gk+t+l+++ +P+sG+il++ +l + + ++++ + q alf + +v++n+++G
MMSYN1_0197 11 VTKEYDG---QVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPIN--KRQFNTIFQSYALFPHlNVFDNVAFGLt 103
5555544...459*************************************************998665..57899999******7658********61 PP
TIGR02204 439 pdasdeeveaaakaaeadefisklp.eGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkg..rttlviah 533
++ +++++++ i+++ eGy+ + +LsGGqkqr+aiara++ + ++LLLde +aLd + +++q+ l++l ++ t ++++h
MMSYN1_0197 104 IKKTKKDIIEREV----MRQIRQVGlEGYEN---KKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDigITFIMVSH 194
5666666665433....33444442256665...67789**********************************************9963258888999 PP
TIGR02204 534 rLa.tvlkadrivvldkGriveqGthaeLia 563
++ +drivv+++G i ++Gt +e+ +
MMSYN1_0197 195 DQEeALSMSDRIVVMNQGTIQQIGTPEEIYN 225
765167789****************998765 PP
>> TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 121.2 0.0 1.3e-37 9.6e-36 478 701 .. 6 226 .. 3 233 .. 0.82
Alignments for each domain:
== domain 1 score: 121.2 bits; conditional E-value: 1.3e-37
TIGR03796 478 velrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfe.gtvrdnlt 574
+elrnvt y + +++++s+++k+G+ + l G+sG+Gk ti k++ G +p sGeilf++k++ ip + + + ++ q lf +v dn++
MMSYN1_0197 6 LELRNVTKEYDG--QVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIP--INKRQFNTIFQSYALFPhLNVFDNVA 99
699999999976..599********************************************998876655..6678899999******5146666665 PP
TIGR03796 575 lwdetipeedlvrAakDAaihdvila..rpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR....gctci 666
+ + kD i+ ++++ r+ g+e ++ lsGGq+qR+ iARaLv +P +L+lDE +aLD + k+++e+l+r g+t i
MMSYN1_0197 100 ------FGLTIKKTKKDI-IEREVMRqiRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLqqdiGITFI 190
......444445555664.444444412344555555566779*******************************************98444459**** PP
TIGR03796 667 ivaHRL.stiRdcdeiivlerGkvverGtHeellak 701
+v+H ++ +d+i+v+++G++ + Gt ee++++
MMSYN1_0197 191 MVSHDQeEALSMSDRIVVMNQGTIQQIGTPEEIYNE 226
****75268999********************9875 PP
>> TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 121.8 1.6 1.2e-37 8.8e-36 4 219 .. 7 223 .. 5 236 .. 0.92
2 ? -1.4 0.1 4 2.9e+02 251 294 .. 300 343 .. 238 349 .. 0.60
Alignments for each domain:
== domain 1 score: 121.8 bits; conditional E-value: 1.2e-37
TIGR03522 4 evsdlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaa 101
e+++++k y q +l+ +sf++++Ge + +lGP G Gk+t++ki+ g k++sG + ++++ + +++ r++ + + l+ l v + ++f +
MMSYN1_0197 7 ELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQFN-TIFQSYALFPHLNVFDNVAFGLT 103
6789****************************************************************987765.5567789**************** PP
TIGR03522 102 lyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdk..tvilsthimqevea 197
+ k k+ ++++v + i++vGl+ + kki++ls G +qrv +a+al+ +Pkvl+ldeP + ld ++e +k++ +d t i+ +h e +
MMSYN1_0197 104 IKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIgiTFIMVSHDQEEALS 201
*****************************************************************9999999*******99633779999******** PP
TIGR03522 198 lcdrviiinkGkivadkkleel 219
+ dr++++n+G i + ee+
MMSYN1_0197 202 MSDRIVVMNQGTIQQIGTPEEI 223
***********99766655555 PP
== domain 2 score: -1.4 bits; conditional E-value: 4
TIGR03522 251 kklkgntykltveteedvrkeifdlakekgl.kllelkqkeknle 294
+ kg +++++vet+++ r+ i++ ++e ++ + +++k k n+
MMSYN1_0197 300 TTFKGIHWEVVVETSKK-RQWIIHTINEYDIdQQVSIKWKPANVH 343
34467778877777665.444444444444314566666655555 PP
>> TIGR00958 3a01208: antigen peptide transporter 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 119.1 0.1 5.7e-37 4.2e-35 494 705 .. 18 228 .. 6 233 .. 0.85
Alignments for each domain:
== domain 1 score: 119.1 bits; conditional E-value: 5.7e-37
TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsg.svreNiaYGltkte.deevta 589
+ vlk+++f+++ Ge ++l GPsG GK t+ ++ +P++G++l ++k+l + +r+ + q lf v +N+a+Glt ++ ++++
MMSYN1_0197 18 QVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPI--NKRQFNTIFQSYALFPHlNVFDNVAFGLTIKKtKKDIIE 113
579*************************************************88765..589***********975389********98887888877 PP
TIGR00958 590 aakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliah.rLstvekadk 682
++ ++ + +l +gy+ ++k lsgGqkqr+AiARALv kP vL+LDe +ALD++ +++qe ++ + t +++ h + + +d+
MMSYN1_0197 114 REVMRQIRQV--GL-EGYE---NKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEelkrLQQDIGITFIMVSHdQEEALSMSDR 205
7666665543..22.3444...345556*********************************9999999865334555567999999834567899*** PP
TIGR00958 683 ilvlkkgsvvelGthkqLmeked 705
i+v+++g++++ Gt ++++++++
MMSYN1_0197 206 IVVMNQGTIQQIGTPEEIYNEPE 228
****************9998865 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 119.1 0.0 6e-37 4.4e-35 2 225 .. 6 224 .. 5 236 .. 0.91
Alignments for each domain:
== domain 1 score: 119.1 bits; conditional E-value: 6e-37
TIGR03873 2 lrlsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalG 99
l+l +v+ + +g+++++++ ++ +G+ +llGP G+Gk+t+l+++ G +p+ Ge+ ++ ++l ++ +r + ++ q+ + l+v d va+G
MMSYN1_0197 6 LELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKR--QFNTIFQSYALFPHLNVFDNVAFG 101
788999***********************************************************9999887..678999****************** PP
TIGR03873 100 riPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhd 196
+ +++ + v r + +v+l+ + +++++ lsGG++qrv +aral +Pk+llldeP ldv+ + + + ++ l + g+t ++ hd
MMSYN1_0197 102 LTIKKTKKDI----IEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQqDIGITFIMVSHD 195
9877654332....3344667899************************************************998888877776526699******** PP
TIGR03873 197 lnlaasvcdhvvvldgGrvvaaGppaevl 225
+ a s++d++vv+++G + G+p+e+
MMSYN1_0197 196 QEEALSMSDRIVVMNQGTIQQIGTPEEIY 224
*************************9985 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 117.5 0.0 1.8e-36 1.3e-34 1 187 [. 6 196 .. 6 206 .. 0.90
Alignments for each domain:
== domain 1 score: 117.5 bits; conditional E-value: 1.8e-36
TIGR01189 1 LeaeelaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfya 98
Le ++++ e +++v+l+g+sf+++ Ge++ + Gp G GKtt+L+i+ G +kp+sGe+ ++dk+l ++++ + + +l ++L + +n+ f
MMSYN1_0197 6 LELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIP-INKRQFNTIFQSYALFPHLNVFDNVAFGL 102
78999*******************************************************99988776.677999999999***************99 PP
TIGR01189 99 allqseqk....tveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGiv.llathqd 187
++ ++++ +v + +vgL+g+e+ + +Ls Gqk+R+a+ar l+ k ++ +LDEP++alD++ ++++e l+ + Gi+ ++ +h +
MMSYN1_0197 103 TIKKTKKDiierEVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITfIMVSHDQ 196
999866543334788999***********************************************************99999998724455544 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 114.9 0.2 1.1e-35 8e-34 456 681 .. 6 226 .. 2 236 .. 0.83
Alignments for each domain:
== domain 1 score: 114.9 bits; conditional E-value: 1.1e-35
TIGR01846 456 iefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdnia 552
+e++n++ y d +vl+ +s+++k+Ge+i + GpsG+Gk+t+ k++ P+ G++l ++++l + P +rq ++q lf + dn+a
MMSYN1_0197 6 LELRNVTKEY--DGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPI-P-INKRQFNTIFQSYALFPHlNVFDNVA 99
5677777776..6679**********************************************9998655.3.4589************6538****** PP
TIGR01846 553 lakPaiseek.viaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick..grtvii 647
+ +++k +i+ + ++ + +Gye+ k +lsGGq+qr+a+aralv +P++l+lde +ald + ++++++l+++ + g t i+
MMSYN1_0197 100 FGLTIKKTKKdIIEREVM---RQIRQVGLEGYEN---KKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQdiGITFIM 191
997665555414443333...3333334578875...45567**********************************************98556899** PP
TIGR01846 648 iahrl.stvraadrilvlekGkivesGkheellak 681
++h +++ +dri+v+++G i + G+ ee+ ++
MMSYN1_0197 192 VSHDQeEALSMSDRIVVMNQGTIQQIGTPEEIYNE 226
***65279********************9998776 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.7 0.3 5.3e-34 3.9e-32 2 209 .. 27 235 .. 26 242 .. 0.79
Alignments for each domain:
== domain 1 score: 109.7 bits; conditional E-value: 5.3e-34
TIGR03771 2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhe.fawdfpidveqtvlsGragliGllrrpkkadf..aavad 96
+v++Ge+++llGp G Gktt+l+ i g k++ G++ + k+ + i ++ + + + + v++ a Gl + +k+d + v
MMSYN1_0197 27 NVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIP----IPINKRQFNtIFQSYALFPHLNVFDNVA--FGLTIKKTKKDIieREVMR 118
7899***********************************974433....3222222220222344444444444433..4555555555551257999 PP
TIGR03771 97 alervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelage.gtailmtthdlaeavatcdrvvllngrvv.a 192
+++v l+ ++ + elsGGq+qrv +aral +kp++llldep++ ld+ ++++ e ++ l ++ g + +m++hd ea++++dr+v++n+ +
MMSYN1_0197 119 QIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDiGITFIMVSHDQEEALSMSDRIVVMNQGTIqQ 216
9**************************************************************998689**********************9655516 PP
TIGR03771 193 dgapdqlqda..alwketf 209
g+p+++ + + w+ f
MMSYN1_0197 217 IGTPEEIYNEpeNAWVANF 235
79***99764225677666 PP
>> TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.9 0.7 3.7e-34 2.8e-32 329 541 .. 16 224 .. 3 226 .. 0.87
Alignments for each domain:
== domain 1 score: 109.9 bits; conditional E-value: 3.7e-34
TIGR01842 329 ekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeG.tvaenia.Rfeenadaekv 424
+ + +lkgisf++k+Ge+++++Gpsg Gk+++ +++ G+++p+sG++ ++ +l ++ ++ + q Lf+ v +n+a ++ + +++++
MMSYN1_0197 16 DGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINK--RQFNTIFQSYALFPHlNVFDNVAfGLTIKKTKKDI 111
45689***********************************************998765444..44455789999*9864799***944677789999* PP
TIGR01842 425 ieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkar.kitvvvith.rpsllelv 520
ie + ++ ++ l +GY+ + + +LsgGq+qR+a+aRal +Pk+++LDeP a LD + + + + lk+l++ +it ++++h + ++l++
MMSYN1_0197 112 IEREVMRQIRQVGL---EGYENK---KIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDiGITFIMVSHdQEEALSMS 203
***99999999866...599975...5678**********************************************9864889999**945689**** PP
TIGR01842 521 dkilvlkdGalkafGereevl 541
d+i+v+++G++++ G+ ee+
MMSYN1_0197 204 DRIVVMNQGTIQQIGTPEEIY 224
****************99986 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.2 0.0 6.4e-34 4.7e-32 334 529 .. 5 195 .. 1 196 [. 0.86
Alignments for each domain:
== domain 1 score: 109.2 bits; conditional E-value: 6.4e-34
TIGR02868 334 tlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlF.dttvreNlr 430
lelr+++ +y+g+ vlkg+s+++++Ge ++++G+sG+GK+t+l+++ g +p++Ge++ ++ ++ + + +r + q lF + v +N+
MMSYN1_0197 5 ILELRNVTKEYDGQ-VVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPIN--KRQFNTIFQSYALFpHLNVFDNVA 99
5899*******998.89**********************************************999887655..455555556666663458999999 PP
TIGR02868 431 la......rpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeeg 520
++ ++d + e+++ +++vgL+ + ++ + lSGG++qR+a+ARaL+ + +vllLDEP + LD++ ++ + e+L + + g
MMSYN1_0197 100 FGltikktKKDIIEREVMRQIRQVGLEGYENK-----------KIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKrlQQDIG 186
87444444677788999999999999888777...........5677*******************************************86688889 PP
TIGR02868 521 rtvvlvthr 529
t ++v+h+
MMSYN1_0197 187 ITFIMVSHD 195
99******7 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 106.6 0.0 3.7e-33 2.7e-31 4 236 .. 5 237 .. 2 290 .. 0.86
Alignments for each domain:
== domain 1 score: 106.6 bits; conditional E-value: 3.7e-33
TIGR01288 4 aidlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvf 101
++l +v+k y ++vv++ +sf + +ge + llgp g+gk+ti +++ g p+ g+i +++ + + + + + q +l + + v +n+ f
MMSYN1_0197 5 ILELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKN-LIPIPINKRQFNTIFQSYALFPHLNVFDNV-AF 100
5799******************************************************876655.4556777888889999999999999*9996.68 PP
TIGR01288 102 gryfglstre.ieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsll.argktilltthlmee 197
g ++ + ++ ie + + le + ++ +lsgg k+r+++aral+ p++l+ldep + ld + r+ + e l+ l g t ++ +h ee
MMSYN1_0197 101 GLTIKKTKKDiIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQqDIGITFIMVSHDQEE 198
98887766652688999999999*******************************************************9996258************* PP
TIGR01288 198 aerlcdrlcvleagrkiaegrpdalideqigcdvieiyg 236
a + dr++v+++g+ g p+ + +e v + g
MMSYN1_0197 199 ALSMSDRIVVMNQGTIQQIGTPEEIYNEPENAWVANFIG 237
***************9999****9999877766665544 PP
>> TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 99.6 1.6 4.6e-31 3.4e-29 1 218 [. 5 213 .. 5 221 .. 0.91
Alignments for each domain:
== domain 1 score: 99.6 bits; conditional E-value: 4.6e-31
TIGR02633 1 llemkgivkkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvlen 98
+le+++++k+++g l++i+++++ Ge ++l G G+Gk+t++k++ g +Geilfe+++l i++ + i q +l ++l v +n
MMSYN1_0197 5 ILELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQ--KPNSGEILFEDKNLIPIPINK---RQFNTIFQSYALFPHLNVFDN 97
599*********************************************975..4568**********9999865...5677899************** PP
TIGR02633 99 iflGneitlkGglmdydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkak.gvacv 195
+ +G i + +++d + + + + +r++ l+ ++ + + +l +Gq+q v ia+al + ++l+ldep a+l k +++ + ++ l++ g++ +
MMSYN1_0197 98 VAFGLTIKK----TKKDIIEREVMRQIRQVGLEGYENKK-IDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDiGITFI 190
***976654....5577888888899*********9999.******************************************999999987549**** PP
TIGR02633 196 yishkleevkavsdtisvirdGq 218
+sh ee ++sd+i v+ +G
MMSYN1_0197 191 MVSHDQEEALSMSDRIVVMNQGT 213
*******************9994 PP
>> TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 96.6 1.0 4.5e-30 3.3e-28 475 696 .. 7 224 .. 2 235 .. 0.85
Alignments for each domain:
== domain 1 score: 96.6 bits; conditional E-value: 4.5e-30
TIGR01193 475 evndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsG.silenlllg 571
e+ +v+ +y g+ vl+ is+++k+ e itl+G sG Gk+t+ k++ + +++sGeil+++k+l i ++ ++ n + q +f +++n+ +g
MMSYN1_0197 7 ELRNVTKEYD-GQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPIN--KRQFNTIFQSYALFPHlNVFDNVAFG 101
5666666665.7889*************************************************988776..455688889998986438******** PP
TIGR01193 572 akenvsqeeikkaveiaeikddieklpl.GyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdk...tiifv 665
+ ++++i++ e+ +i+++ l Gy+ ++ ++sgGqkqr+a+aral+ + kvl+lde + ld+ + k + e+l +l++ t i+v
MMSYN1_0197 102 LTIKKTKKDIIER----EVMRQIRQVGLeGYEN---KKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDigiTFIMV 192
9999888888874....7888888765336665...56689*********************************************997544589999 PP
TIGR01193 666 ahrlsva.kksdkiivldeGkiieqGshkell 696
+h + a ++sd+i+v+++G i + G+ +e+
MMSYN1_0197 193 SHDQEEAlSMSDRIVVMNQGTIQQIGTPEEIY 224
**88765489************9999877765 PP
>> TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 91.2 0.6 1.9e-28 1.4e-26 320 500 .. 3 196 .. 1 211 [. 0.80
Alignments for each domain:
== domain 1 score: 91.2 bits; conditional E-value: 1.9e-28
TIGR03719 320 dkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklay..vdqsrd......alddnktvweeisd 409
++++e++n++k+++ +++++ +sf++ +g + ++Gp G+Gk+t++k+i g++kp+sGe+ + + + ++ + al ++ +v+++++
MMSYN1_0197 3 NNILELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIpiNKRQFNtifqsyALFPHLNVFDNVAF 100
789*********************************************************998875443310222222111122577899******** PP
TIGR03719 410 GldllklgkvevnsrayvgrfnfkGad..qqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefa...G.cavvishdr 500
Gl +k k+++ r + + G + +kk++elsGG+++rv +a+ l + vllldeP ldv+ ++++e l+ + G + +++shd+
MMSYN1_0197 101 GLT-IKKTKKDIIEREVMRQIRQVGLEgyENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQqdiGiTFIMVSHDQ 196
*96.56677788888877776666644225799************************************9999999888655422241457799996 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.7 0.1 1.8e-26 1.3e-24 336 559 .. 7 226 .. 3 251 .. 0.82
Alignments for each domain:
== domain 1 score: 84.7 bits; conditional E-value: 1.8e-26
TIGR01192 336 efrdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnr.sirenirlg 432
e+r+++ e+ + ++ +sf++k g+ ++++gp+g gktt++ ++ +p+sg+il + ++ + + ++ + t+fq l+ + +n+ +g
MMSYN1_0197 7 ELRNVTKEYDG-QVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPIN--KRQFNTIFQSYALFPHlNVFDNVAFG 101
67777777753.445688******************************************9999888765..7899*********965389******* PP
TIGR01192 433 re.datdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknr.ttfii.a 527
+ + t+++++e +++ + l+gy+ ++ ++lsgg++qr+aiara++ +l+lde +aldv+ +++ + l+++ tfi+ +
MMSYN1_0197 102 LTiKKTKKDIIEREV---MRQIRQVGLEGYEN---KKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIgITFIMvS 193
873567777777554...34444556677765...57889************************************************9636888625 PP
TIGR01192 528 hr.lstvreadlvlfldqgrliekgsfdeliqk 559
h ++ +d ++ ++qg + + g+ +e+ ++
MMSYN1_0197 194 HDqEEALSMSDRIVVMNQGTIQQIGTPEEIYNE 226
651568899********************9885 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.3 0.2 2.4e-26 1.7e-24 34 254 .. 14 223 .. 3 226 .. 0.84
Alignments for each domain:
== domain 1 score: 84.3 bits; conditional E-value: 2.4e-26
TIGR00955 34 kkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkv..sgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlk 129
+ + + +lk++s +k+Ge++ +lG+SG GKtT+l+++ ++ ++ d l ++++++++ + q ++p+l v +++ f +++
MMSYN1_0197 14 EYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEilFEDKNLIPIPINKRQFNT----IFQSYALFPHLNVFDNVAFGLTIKKT 107
4466789*******************************998888765401233455555666555555....67888899***********8777644 PP
TIGR00955 130 rrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqk.gktviltiHQP 226
+ k+ ++ v ++++gL+ ++ +i lSgG+++R+a+a l+ +P++L++DEP + LD +++ + Lk+l q g t i++ H
MMSYN1_0197 108 K---KDIIEREVMRQIRQVGLEGYENKKID------ELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDiGITFIMVSHD- 195
4...777777788889*************9......5**********************************************99747778888886. PP
TIGR00955 227 sselfelfdkiillaeGrvvylGspeea 254
e ++ d+i+++++G + G+pee
MMSYN1_0197 196 QEEALSMSDRIVVMNQGTIQQIGTPEEI 223
56777999****************9985 PP
>> TIGR01978 sufC: FeS assembly ATPase SufC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.6 2.3 9e-26 6.6e-24 1 230 [. 6 221 .. 6 231 .. 0.84
Alignments for each domain:
== domain 1 score: 82.6 bits; conditional E-value: 9e-26
TIGR01978 1 LkikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkefl 98
L++++++ + + + +Lkg++ +vk+Ge ++Gp G Gk t+ k++ g++k sGei +++++l+ + ++ r + +f ++ + n f
MMSYN1_0197 6 LELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKP--NSGEILFEDKNLIPIPINKRQFNTIFQSYALFPHLNVFDNVAF- 100
7889999*****************************************9876..69***********************988877666655555554. PP
TIGR01978 99 rsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ek 195
l+ ++ ++++ e+++ ++++++ l+ + +++++e sGG k+r i + ++++Pk+ +LDe + lDv k++ e++++l+++
MMSYN1_0197 101 --GLTIKK---TKKDII----EREVMRQIRQVGLE-GYENKKIDE-LSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDiGI 187
..444444...333333....33445555566664.588889877.9***********************************************9999 PP
TIGR01978 196 alliithyerllelikPdvvhvlldGrivksGdve 230
++++++h ++ ++ d + v+ +G+i + G e
MMSYN1_0197 188 TFIMVSHDQEEALSM-SDRIVVMNQGTIQQIGTPE 221
*******99866554.6999********9999764 PP
>> TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.2 0.1 1.2e-25 8.7e-24 23 220 .. 20 207 .. 12 211 .. 0.87
Alignments for each domain:
== domain 1 score: 82.2 bits; conditional E-value: 1.2e-25
TIGR02324 23 vlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGv 120
vlk +s++v++Ge+++l G+sG Gk t+lk + ++ +p+sg+il + ++ i + + +++ + q P + + va l+ + +
MMSYN1_0197 20 VLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIP----------IPINKRQFNTIFQSYALFPHLNVFDNVAFGLTIKKT 107
899******************************************9954443..........34444455555566666******************* PP
TIGR02324 121 ereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakar.gaaligifhdeevrelvad 217
++++ + ++ + ++++ + e + sGG kqRv iaral+++ +LLLdeP a+Ld + rk++ e +k+++++ g+++i + hd+e +++d
MMSYN1_0197 108 KKDIIEREVMRQIRQVGL-EGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDiGITFIMVSHDQEEALSMSD 204
******************.7788888899*****************8889******************999988776449********9987777776 PP
TIGR02324 218 rel 220
r +
MMSYN1_0197 205 RIV 207
655 PP
>> TIGR01257 rim_protein: rim ABC transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.5 0.0 4.6e-25 3.3e-23 947 1145 .. 22 221 .. 7 231 .. 0.90
Alignments for each domain:
== domain 1 score: 78.5 bits; conditional E-value: 4.6e-25
TIGR01257 947 drlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlem 1042
+ + e + ++lg g+gktt l i+ g p sg +l k++ + + ++ + q lf hl v + + f +k ++ + e+
MMSYN1_0197 22 KGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLI-PIPINKRQFNTIFQSYALFPHLNVFDNVAFGLTIKKTKKDIIEREV 116
55566667888999********************************985.466667778888999*********************9999999999 PP
TIGR01257 1043 eamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll..lkyrsgrtiimsthhmdeadllgdriaiisqg 1136
+ + gl n++ +lsgg ++++++a a+v kv++ldep + +d r+++ + l l+ g t im +h +ea + dri +++qg
MMSYN1_0197 117 MRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELkrLQQDIGITFIMVSHDQEEALSMSDRIVVMNQG 212
999*******************************************************9988335566799************************* PP
TIGR01257 1137 rlycsgtpl 1145
+ gtp
MMSYN1_0197 213 TIQQIGTPE 221
*******96 PP
>> TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 77.2 0.6 4.3e-24 3.2e-22 2 221 .. 4 219 .. 3 236 .. 0.86
Alignments for each domain:
== domain 1 score: 77.2 bits; conditional E-value: 4.3e-24
TIGR02323 2 pllevselsksygskkgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrm 97
+le+++++k+y +++ ++ +sf + Ge ++++G sG Gk+t+lk + + +++Ge+ +e+++ l+ ++ +r++ t + q + l
MMSYN1_0197 4 NILELRNVTKEYDGQVVLKgISFnVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKN----LIPIPINKRQF--NT----IFQ-SYALFP 90
6899**************99******************************************988....99999999883..44....333.334566 PP
TIGR02323 98 evsaGanigerllavgarhyGkiraaakwlekveidaari.kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelgla 191
++ n++ l + +++ r+ + +++v ++ k ++sGG +qr+ iar+lv +p+++++ ep l v ++ + l++l +++g++
MMSYN1_0197 91 HLNVFDNVAFGLTIKKTKKDIIEREVMRQIRQVGLEGYENkKIDELSGGQKQRVAIARALVMKPKVLLLdEPMAALdVKLRKTMQeELKRLQQDIGIT 188
666677888888887777777778888889999888654437789*********************9999******999999998899********** PP
TIGR02323 192 viivth.lavarllaqrllvmkqGrvvesGl 221
i+v+h a +++r++vm+qG + + G
MMSYN1_0197 189 FIMVSHdQEEALSMSDRIVVMNQGTIQQIGT 219
******8888888***********9977775 PP
>> TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.5 0.1 8.2e-23 6e-21 338 547 .. 7 214 .. 3 218 .. 0.82
Alignments for each domain:
== domain 1 score: 72.5 bits; conditional E-value: 8.2e-23
TIGR01194 338 elkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpde 435
el++v +y l i +++++Ge++ ++G GcGk+t++k++ G +p++Ge+l++ + + + + f ++f y lf +l d+
MMSYN1_0197 7 ELRNVTKEYD-----GQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPIN--KRQFNTIFQSYALFPHLNVFDN 97
5555554443.....245688899***************************************99988765443..3459*************88888 PP
TIGR01194 436 kkqa.sldqattylsrleled...kvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishd 529
+++++++ + e+ +v +e+ + +ls Gq++r+a+ a + + vlllde a d +++ + eel + G t +++shd
MMSYN1_0197 98 VAFGlTIKKTKKDIIEREVMRqirQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHD 195
76651556666666666665511145566666677899******************************************99988899********** PP
TIGR01194 530 d.ryfeladrlikladGkv 547
+ + + ++dr++ + +G++
MMSYN1_0197 196 QeEALSMSDRIVVMNQGTI 214
72579**********9998 PP
>> TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 63.2 0.7 5.1e-20 3.8e-18 464 639 .. 16 195 .. 2 200 .. 0.80
Alignments for each domain:
== domain 1 score: 63.2 bits; conditional E-value: 5.1e-20
TIGR00954 464 egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.PvygglltkpeegklFyvPqrPYmslgtlRdqiiYPd.ssedfkerglsdkdL.eqi 558
+g+v+++ +sf+vk+G+ + ++GP GcGK + +i+g+ P g l +++l +P + + ++P ++ d gl+ k+ ++i
MMSYN1_0197 16 DGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQkPNSGEILFE--DKNLIPIPINKRQFNTIFQSYALFPHlNVFDNVAFGLTIKKTkKDI 111
79**********************************99761555555544..4567788877777778899999999735678888888766551456 PP
TIGR00954 559 LeevkLedllereggwdavqdWk.dvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyela....kevgitllsvshr 639
+e + ++ r++g++ ++ k d+LsgG+kqR+a+AR + kPk +LDE +A+ v + + + e++ +++git++ vsh
MMSYN1_0197 112 IEREVMRQI--RQVGLEGYENKKiDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELkrlqQDIGITFIMVSHD 195
666666666..8899999988755***********************************987777665511116789*******96 PP
>> TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.3 0.0 5.6e-17 4.1e-15 651 874 .. 18 251 .. 3 264 .. 0.70
Alignments for each domain:
== domain 1 score: 52.3 bits; conditional E-value: 5.6e-17
TIGR00957 651 pptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkg.svayvpqqawiqndslrenilfgk..aleekyykavleac.alladle 744
l+g+++++ eg +++++g+ gcgk+++l + + + g++ + + +p + n+ ++ lf + +++ + +++ + + e
MMSYN1_0197 18 QVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDkNLIPIPINKRQFNTIFQSYALFPHlnVFDNVAFGLTIKKTkKDIIERE 115
55799999999999999999999999999999988888888898887651455677666666666666666654212344444444443312344445 PP
TIGR00957 745 ilpsgdrtei....gekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgi.sylpqvdviivlsdg 837
++ + + +k +lsggqkqrv++ara+ + + lld+p++a+d ++ k + e++ + + t i+v+h l d i+v+ +g
MMSYN1_0197 116 VMRQIRQVGLegyeNKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQ-DIGITFIMVSHDQeEALSMSDRIVVMNQG 212
55444443321110334446999999999999999999999999999999999999999888765544.45789999999862579999999999999 PP
TIGR00957 838 kisemgsyqelldr..dgafaeflrtyasaedeldaedd 874
i ++g+ +e+ + + a+f+ + d +ed+
MMSYN1_0197 213 TIQQIGTPEEIYNEpeNAWVANFIGSSNIITDGIFLEDN 251
999999999988742255567887766655555555555 PP
>> TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.0 0.1 4.3e-15 3.2e-13 439 637 .. 18 226 .. 8 242 .. 0.70
Alignments for each domain:
== domain 1 score: 46.0 bits; conditional E-value: 4.3e-15
TIGR01271 439 tpvlknislklekgqllavagstgsgkssllmmilgelepsegkikhsgr....isf.spqvswim......pg.tikdniifglsydeyrytsvika 524
vlk is++++ g+++++ g +g+gk+++l +i g +p g i + i q++ i+ p + dn+ fgl+ + + + +
MMSYN1_0197 18 QVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKnlipIPInKRQFNTIFqsyalfPHlNVFDNVAFGLTIKKTKKDIIERE 115
569*****************************************987765222222112344333311111143346788888888777654433322 PP
TIGR01271 525 cqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllan..ktrilvts.klehlkkadkill 619
+ l ++ + lsggq+ r+++ara+ + lld p++ ldv k + e+ l +l + t i+v+ + e l +d+i++
MMSYN1_0197 116 VMRQIRQVGLEGYENKKID----ELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEE-LKRLQQDigITFIMVSHdQEEALSMSDRIVV 208
2222222222333333333....49**********************************9999887.445544321688888761457899******* PP
TIGR01271 620 lhegscyfygtfselqak 637
+ +g+ gt e+ ++
MMSYN1_0197 209 MNQGTIQQIGTPEEIYNE 226
******999999998876 PP
>> TIGR00956 3a01205: pleiotropic drug resistance family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.2 0.0 3.3e-14 2.5e-12 66 293 .. 10 218 .. 1 225 [. 0.78
Alignments for each domain:
== domain 1 score: 43.2 bits; conditional E-value: 3.3e-14
TIGR00956 66 kkekeskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeikkhyr.gdvvYsaetdvHlpsltvketLdfa 162
+ +ke + + +lk ++ +k ge++ +LG+ g G++t+Lk i + ++k ++++i ++ + i ++r + ++ ++ +p+l v + + f
MMSYN1_0197 10 NVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGG----SQKPNSGEILFEDKNLIPIPINKRqFNTIF--QSYALFPHLNVFDNVAFG 101
344555566789****************************9986....56678899**99988888765555024555..55679************9 PP
TIGR00956 163 arlktpqnRvkgvsreeyakkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilk 260
+k + + ++re++ ++ ++ GL+ +n k+ +sGG+++Rv+ia +lv+k+k++++D+ LD + + lk + +
MMSYN1_0197 102 LTIKKT--KKDIIEREVM-RQ-----IRQVGLEGYENKKID-----ELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIG 186
998854..4455555544.44.....455699988998874.....48*******************************9877777777777766665 PP
TIGR00956 261 atalvaiyqasqdayelFdkvvvlyeGkqiyfG 293
t ++ + ++a + d++vv+++G + G
MMSYN1_0197 187 IT-FIMVSHDQEEALSMSDRIVVMNQGTIQQIG 218
55.5556677899**************876555 PP
>> TIGR00630 uvra: excinuclease ABC subunit A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.3 0.1 0.058 4.3 622 651 .. 20 49 .. 2 54 .. 0.82
2 ! 35.4 0.1 1.2e-11 8.6e-10 458 583 .. 105 225 .. 66 287 .. 0.78
Alignments for each domain:
== domain 1 score: 3.3 bits; conditional E-value: 0.058
TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLin 651
lk i+ +++ g+++++ G+sg Gk t+++
MMSYN1_0197 20 VLKGISFNVKEGEFITLLGPSGCGKTTILK 49
488999999999999999999999999875 PP
== domain 2 score: 35.4 bits; conditional E-value: 1.2e-11
TIGR00630 458 eevlkeiker..lkfLvdvGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlr.dlGntlivvehD.eet 551
++ k+i+er ++ + +vGL+ + +++++ lsGG +qr+++a + + + +lDeP L + + + e lkrl+ d G t i+v hD ee+
MMSYN1_0197 105 KKTKKDIIERevMRQIRQVGLEGYE-NKKIDELSGGQKQRVAIARALVMKP--KVLLLDEPMAALDVKLRKTMQEELKRLQqDIGITFIMVSHDqEEA 199
444455555533455678***9765.78899**************997654..4568***********************6489**********4578 PP
TIGR00630 552 ireaDyvvdiGPgaGehGGevvasgsleellk 583
++ +D++v + G++ + g++ee+ +
MMSYN1_0197 200 LSMSDRIVVMNQ------GTIQQIGTPEEIYN 225
9*******8854......45555566666655 PP
>> TIGR00602 rad24: checkpoint protein rad24
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.6 0.1 5.6e-05 0.0041 104 130 .. 25 51 .. 15 65 .. 0.80
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 5.6e-05
TIGR00602 104 vLeskkkriLLitGPsGCgKsTvikiL 130
+ ++k+ + + GPsGCgK+T++ki+
MMSYN1_0197 25 SFNVKEGEFITLLGPSGCGKTTILKII 51
5566666667788************97 PP
>> TIGR00611 recf: DNA replication and repair protein RecF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.4 0.1 0.93 68 25 43 .. 33 51 .. 25 61 .. 0.83
2 ? 9.4 0.2 0.0016 0.12 305 364 .. 156 213 .. 144 214 .. 0.85
Alignments for each domain:
== domain 1 score: 0.4 bits; conditional E-value: 0.93
TIGR00611 25 vnvlvGeNgqGKtnlleai 43
+ l+G+ g GKt +l+ i
MMSYN1_0197 33 FITLLGPSGCGKTTILKII 51
56799**********9877 PP
== domain 2 score: 9.4 bits; conditional E-value: 0.0016
TIGR00611 305 illlDDvaseLDeqrreaLaelleekgeqvfvtaislddlkemelaesvkialvsvekgk 364
+lllD ++ LD + r+ + e l+ ++ + +t i + + +e l s +i ++++ g+
MMSYN1_0197 156 VLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEALSMSDRIVVMNQ--GT 213
9**********************************999998877777776666555..65 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (351 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 320 (0.0713012); expected 89.8 (0.02)
Passed bias filter: 187 (0.0416667); expected 89.8 (0.02)
Passed Vit filter: 88 (0.0196078); expected 4.5 (0.001)
Passed Fwd filter: 61 (0.0135918); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 61 [number of targets reported over threshold]
# CPU time: 0.58u 0.19s 00:00:00.77 Elapsed: 00:00:00.34
# Mc/sec: 1482.50
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0197 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0198 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0198.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0198/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0198 [L=119]
Description: rplT_bact: ribosomal protein L20 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-51 170.1 7.7 4.3e-51 170.0 7.7 1.0 1 TIGR01032 rplT_bact: ribosomal protein bL20
------ inclusion threshold ------
0.021 11.9 0.0 0.025 11.6 0.0 1.1 1 TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family
Domain annotation for each model (and alignments):
>> TIGR01032 rplT_bact: ribosomal protein bL20
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 170.0 7.7 1.9e-54 4.3e-51 1 114 [] 1 114 [. 1 114 [. 0.99
Alignments for each domain:
== domain 1 score: 170.0 bits; conditional E-value: 1.9e-54
TIGR01032 1 maRvkrgvvarkrrkkiLkqakGfygarkksykkakqavikalayayrdRkqrkrdfRsLWiaRinaalreeglsYsrlingLkkanieinRkvLsel 98
maRvk g+v+r+rrk+++k+akG++g++k+sykka+++vi+++aya+ Rk+rkrdfRsLWi+Rinaa+r eglsYs +++gLk ani+inRk+Lsel
MMSYN1_0198 1 MARVKYGKVTRARRKRWIKLAKGYFGTKKSSYKKAHEQVIRSMAYAFIGRKERKRDFRSLWIVRINAAVRPEGLSYSTFMHGLKLANININRKMLSEL 98
89************************************************************************************************ PP
TIGR01032 99 aiedpeafkevvekak 114
ai++ e+fk++v++ak
MMSYN1_0198 99 AINNSEEFKQIVQQAK 114
*************997 PP
>> TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.6 0.0 1.1e-05 0.025 11 116 .. 15 117 .. 7 119 .] 0.85
Alignments for each domain:
== domain 1 score: 11.6 bits; conditional E-value: 1.1e-05
TIGR01037 11 knPvilasGvlgskvealkliakegaGavvtksigleprk.GyenPtivevkaGllnaiGLqnPgveefleelkkvreevdtkliasvyGeseeefae 107
k + la G +g+k+++ k ++++ + ++ ig ++rk +++ iv ++a + GL + f++ lk + ++++k++ +++ ++ eef +
MMSYN1_0198 15 KRWIKLAKGYFGTKKSSYKKAHEQVIRSMAYAFIGRKERKrDFRSLWIVRINAA-VRPEGL---SYSTFMHGLKLANININRKMLSELAINNSEEFKQ 108
666889*****************************9998725677788887764.455566...5789****************************** PP
TIGR01037 108 vaeklekad 116
++++ +ka
MMSYN1_0198 109 IVQQAKKAL 117
***999886 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (119 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 230 (0.0512478); expected 89.8 (0.02)
Passed bias filter: 95 (0.0211676); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 899.42
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0198 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0199 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0199.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0199/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0199 [L=63]
Description: L35 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.5e-19 66.9 12.2 3.8e-19 66.7 12.2 1.0 1 TIGR00001 rpmI_bact: ribosomal protein bL35
Domain annotation for each model (and alignments):
>> TIGR00001 rpmI_bact: ribosomal protein bL35
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 66.7 12.2 8.5e-23 3.8e-19 1 61 [. 2 62 .. 2 63 .] 0.98
Alignments for each domain:
== domain 1 score: 66.7 bits; conditional E-value: 8.5e-23
TIGR00001 1 pKmKTkkaaaKRFkvtgsGkikrkkagkrHlltkKsskrkRqLrkkalvsksdlkrvkllL 61
pKmKTkk+ aKR v+++G +kr ka+++H t K++k+kRqL+k +++sk d k++k lL
MMSYN1_0199 2 PKMKTKKSLAKRVTVKSNGTLKRAKAYRSHRATGKTTKQKRQLSKATIISKVDMKNLKGLL 62
9*********************************************************998 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (63 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 219 (0.0487968); expected 89.8 (0.02)
Passed bias filter: 82 (0.0182709); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 430.81
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0199 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0200 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0200.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0200/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0200 [L=181]
Description: infC: translation initiation factor IF-3 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-45 152.9 8.8 1.6e-45 152.7 8.8 1.0 1 TIGR00168 infC: translation initiation factor IF-3
0.0052 14.3 0.3 0.0073 13.8 0.3 1.2 1 TIGR00736 nifR3_rel_arch: putative TIM-barrel protein
Domain annotation for each model (and alignments):
>> TIGR00168 infC: translation initiation factor IF-3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 152.7 8.8 7.2e-49 1.6e-45 1 164 [. 17 180 .. 17 181 .] 0.98
Alignments for each domain:
== domain 1 score: 152.7 bits; conditional E-value: 7.2e-49
TIGR00168 1 inekirakevrlidenGeqlgivsleealkiAeeaglDLvlisanakpPv.ckildygkykyekekkkkeakKkqkviqvKEvklkpkidehDlevkl 97
+ne ira++v +ide+ ++lg++s+++al+iA ++lDL +++ +++ v +i+++gk kye++kk+keakK+q+ i+ KE+++ +i +hDle+k+
MMSYN1_0200 17 VNEFIRAHQVLVIDEDKQNLGVMSKRQALEIARSKNLDLYQVGVQPDGTViTRIVNFGKLKYEQQKKSKEAKKHQTKIENKEIRITVNIGKHDLETKA 114
7999******************************************9876269********************************************* PP
TIGR00168 98 kqakrflekgdkvKvtvrfrGRelahkelgeevldrvkekvaevaevekaptksegrsmvlllaPkk 164
++ak+fle+g++vKv+++frGRe+ +lg++ l+++ e v++v ++ek++ k++g+++ + ++Pkk
MMSYN1_0200 115 RKAKEFLEEGSRVKVSLKFRGREVVYLDLGQQTLNNFFELVSDVGKMEKEA-KLNGKFLDMYIVPKK 180
**************************************************9.**************8 PP
>> TIGR00736 nifR3_rel_arch: putative TIM-barrel protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.8 0.3 3.3e-06 0.0073 58 133 .. 88 164 .. 70 176 .. 0.84
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 3.3e-06
TIGR00736 58 kkeakkike.rakvavnvrisaleeeldvelsvaesadiieinahCrqPeiteiGiGqellknkelLkefvakvkka 133
kk+ ki + + +++vn+ +le + ++ e + + r e++ + Gq+ l n L+ v k++k
MMSYN1_0200 88 KKHQTKIENkEIRITVNIGKHDLETKARKAKEFLEEGSRVKVSLKFRGREVVYLDLGQQTLNNFFELVSDVGKMEKE 164
4555577665789999999******************************************9987777777777743 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (181 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 352 (0.0784314); expected 89.8 (0.02)
Passed bias filter: 98 (0.021836); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1368.02
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0200 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0201 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0201.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0201/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0201 [L=200]
Description: pept_deformyl: peptide deformylase 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-34 117.3 0.2 1.4e-34 116.9 0.2 1.2 1 TIGR00079 pept_deformyl: peptide deformylase
Domain annotation for each model (and alignments):
>> TIGR00079 pept_deformyl: peptide deformylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 116.9 0.2 3.1e-38 1.4e-34 32 159 .. 49 196 .. 17 198 .. 0.80
Alignments for each domain:
== domain 1 score: 116.9 bits; conditional E-value: 3.1e-38
TIGR00079 32 dmietmia......ee.........GiGlAApQvgikkrllvvdledek.kekklvliNPkiiekseeksvle..EGCLSvpev.kgdviRaekvkik 110
++i++++ ++ +GlAApQ+g++k +++v+ + ++ k +++++iN k+i++s++ ++l+ EGCLSv++ g v+R+ k+ ++
MMSYN1_0201 49 KLIDFVTFsqdennNNinnkdylrpAVGLAAPQIGVNKDMFYVRFQLDNnKIEQYAMINTKLISTSTQIACLKngEGCLSVDNDhLGFVPRHYKIVVQ 146
44444333223222003333455559******************99666599*******************************9899*********** PP
TIGR00079 111 aldre.gkeitleakgllaiviQHEiDHLnGvlfvdkisklkreklkkel 159
++d+ ++ tl+++++ aiv+QHE+DH Gvl++d+i+k + + + +
MMSYN1_0201 147 GYDWLtKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINKADPLYKDNSW 196
****966678*****************************99887766655 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (200 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 144 (0.0320856); expected 89.8 (0.02)
Passed bias filter: 84 (0.0187166); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1511.62
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0201 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0202 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0202.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0202/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0202 [L=185]
Description: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 5=Equivalog rRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.4e-35 118.1 0.1 9.2e-35 118.0 0.1 1.0 1 TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltran
0.0032 14.8 0.0 0.0043 14.3 0.0 1.2 1 TIGR01177 TIGR01177: putative methyltransferase, TIGR01177 f
------ inclusion threshold ------
0.01 13.3 0.0 0.014 12.8 0.0 1.2 1 TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransfer
0.021 13.1 0.0 0.034 12.4 0.0 1.3 1 TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarb
Domain annotation for each model (and alignments):
>> TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 118.0 0.1 8.2e-38 9.2e-35 13 190 .. 2 180 .. 1 184 [. 0.88
Alignments for each domain:
== domain 1 score: 118.0 bits; conditional E-value: 8.2e-38
TIGR00095 13 kiiggkykgrklkvvnsestRPttdrVreslFnilrkei..vgakvLdlfaGsgalglEALsRgakkvvfveqdkkvaktlkeNlstlklskeqatvl 108
+ii+gkyk+ kl++++s+ tRPt r++e +Fni+ +++ ++ Ldlf Gsg+l++E LsRg k +++ + +k + k++ Nl+++ s ++
MMSYN1_0202 2 HIISGKYKKMKLQTLDSSITRPTLTRIKEDMFNIISNYFifENKTSLDLFGGSGSLSIEGLSRGIKFAIINDLNKDANKIISFNLKKIPTSD-YVLYQ 98
6999*********************************95448999********************************************666.55555 PP
TIGR00095 109 ndaeralavlakketvfdiiylDPPfevkl.leailelllenkilnekalivveeeeeeelptspetlellkqkkyGktklel 190
+d l+ l ++ +d++ylDPPf++ + +++ l +n++ln+ a+i+ e++++ +l t+++ l+llk k y k l
MMSYN1_0202 99 KDYLELLNLLKIQHQKVDLVYLDPPFKEIDyYYVVFDFLINNNLLNDWAIIISETNQKLDL-TKIKDLNLLKFKDYNKKYLYI 180
5555555555555569**********9876478899*************************.56**********998876655 PP
>> TIGR01177 TIGR01177: putative methyltransferase, TIGR01177 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.3 0.0 3.8e-06 0.0043 182 258 .. 43 124 .. 25 132 .. 0.87
Alignments for each domain:
== domain 1 score: 14.3 bits; conditional E-value: 3.8e-06
TIGR01177 182 egdrvlDPfcGTGgilIEAgLlGikv.iglDidekmveGariNLehYgiedfkvkrldakklplr....sesvdaiatDpPY 258
e+++ lD f G G++ IE Gik i +D++++ + NL++ +d+++++ d +l +++vd + +DpP+
MMSYN1_0202 43 ENKTSLDLFGGSGSLSIEGLSRGIKFaIINDLNKDANKIISFNLKKIPTSDYVLYQKDYLELLNLlkiqHQKVDLVYLDPPF 124
678899************9999***72556**************************99876533323326***********8 PP
>> TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.8 0.0 1.3e-05 0.014 91 166 .. 46 124 .. 27 129 .. 0.86
Alignments for each domain:
== domain 1 score: 12.8 bits; conditional E-value: 1.3e-05
TIGR03534 91 kvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdlleal....eekgkfdlivsNPPY 166
+ lDl GsG + + +++ ++ i D++++A k+ + N+k+ ++ +++ d+le l +++k+dl+ PP+
MMSYN1_0202 46 TSLDLFGGSGSLSIEGLSRGIKFA-IINDLNKDANKIISFNLKKIPTSDYVLYQKDYLELLnllkIQHQKVDLVYLDPPF 124
679999****99888777766655.567*****************************9888878778999********96 PP
>> TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.4 0.0 3e-05 0.034 18 79 .. 42 102 .. 29 125 .. 0.77
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 3e-05
TIGR02469 18 kkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdap 79
++++ lD +G+Gs++ie + k + + n++a + i+ Nl++ s++++ ++d
MMSYN1_0202 42 FENKTSLDLFGGSGSLSIEGLSRGIKFA-IINDLNKDANKIISFNLKKIPTSDYVLYQKDYL 102
5578899999*********877766654.34488999999*************999998865 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (185 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 154 (0.0343137); expected 89.8 (0.02)
Passed bias filter: 77 (0.0171569); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 1398.25
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0202 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0203 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0203.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0203/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0203 [L=297]
Description: guanyl_kin: guanylate kinase 5=Equivalog Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.6e-67 222.4 0.0 1.3e-66 221.7 0.0 1.3 1 TIGR03263 guanyl_kin: guanylate kinase
1.3e-12 45.7 0.0 1.9e-12 45.2 0.0 1.2 1 TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-
0.0032 15.2 3.0 0.71 7.5 0.0 3.1 2 TIGR00017 cmk: cytidylate kinase
------ inclusion threshold ------
0.019 12.9 1.0 2.6 6.0 0.0 2.6 2 TIGR02173 cyt_kin_arch: putative cytidylate kinase
Domain annotation for each model (and alignments):
>> TIGR03263 guanyl_kin: guanylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 221.7 0.0 1.1e-69 1.3e-66 1 178 [. 4 182 .. 4 184 .. 0.98
Alignments for each domain:
== domain 1 score: 221.7 bits; conditional E-value: 1.1e-69
TIGR03263 1 gklivisgpsGvGKstlvkklle.ekeelklsvSattRkpRegEvdgkdYfFvskeefeekikeeeflEwaevvgnyyGtskkeveealkegkdvlle 97
gk+i+isgpsGvGK+++ +ll+ + +lk+svS+ttRkpR+gE++g++YfFvs+eef + i ++e++E+a++vgn yGt++k+ve+ lk+g++v+le
MMSYN1_0203 4 GKMIIISGPSGVGKGSVNGELLQnPDLRLKYSVSMTTRKPRNGEINGVNYFFVSNEEFAKAIVNDELIEYAHFVGNSYGTPRKYVEQELKKGNNVILE 101
689*******************978899********************************************************************** PP
TIGR03263 98 idvqGakqvkkklpeavsifilppsleeLeeRlkkRgtdseeviekRlekAkkelkaaeefdyvivNddlekaveelksii 178
i+v Ga+qv +k +++sif++pp+l+eL +R+++R+t++ee+i++Rl+kA e+ +++++yvi Nd++++av+++++++
MMSYN1_0203 102 IEVDGATQVLNKEANVLSIFLMPPNLTELANRIRGRQTEDEEKIKARLDKALLEIPLKHNYQYVIENDNVANAVAKITDVL 182
*****************************************************************************9886 PP
>> TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.2 0.0 1.7e-15 1.9e-12 1 177 [. 4 183 .. 4 185 .. 0.82
Alignments for each domain:
== domain 1 score: 45.2 bits; conditional E-value: 1.7e-15
TIGR02322 1 grlilvvGpsGaGKDtlldlarar..ladeprvlfarRvitReadaggEdhealseeeFeeredegafalsWqahGlkYgipve.idewleaGkvvvv 95
g++i++ GpsG GK ++ +++ ++ l+ + +v ++ R R+ ++ g + +s+eeF ++ ++ + + G +Yg p + ++++l++G++v++
MMSYN1_0203 4 GKMIIISGPSGVGKGSVNGELLQNpdLRLKYSVSMTTRK-PRNGEINGVNYFFVSNEEFAKAIVNDELIEYAHFVGNSYGTPRKyVEQELKKGNNVIL 100
89**************98877665113444446666664.688999999*****************999899999*******8659***********9 PP
TIGR02322 96 ngsRavlpeararyanllvvait.aspdvLaqRLaaRgResaeeieeRLarsaelaaeeadvttidnsgsleqagetllrllr 177
++ ++ an+l + + + + La+R++ R e++e+i++RL ++ +++ + + + ++++a++++ ++l+
MMSYN1_0203 101 EIEVDGATQVLNKEANVLSIFLMpPNLTELANRIRGRQTEDEEKIKARLDKALLEIPLKHNYQYVIENDNVANAVAKITDVLH 183
99998888888888887777665156788***********************9988777777766666678889999888876 PP
>> TIGR00017 cmk: cytidylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.5 0.0 0.00063 0.71 4 24 .. 6 26 .. 3 39 .. 0.81
2 ! 6.0 1.2 0.0017 2 75 174 .. 52 155 .. 44 210 .. 0.63
Alignments for each domain:
== domain 1 score: 7.5 bits; conditional E-value: 0.00063
TIGR00017 4 iiaiDGPsaaGKstvakalae 24
+i i GPs+ GK++v +l +
MMSYN1_0203 6 MIIISGPSGVGKGSVNGELLQ 26
688************988765 PP
== domain 2 score: 6.0 bits; conditional E-value: 0.0017
TIGR00017 75 vevllngedvseairtqevanlvskvaaeqkvReallkkqrklakndglvad.GRDigtvvl.pnae.lKifLdA.sveeRAkR.Rlkdlekkg.nev 166
+++ +e+ +ai ++e+ + + +v ++ + ++l+k ++++++ D +t+vl ++a+ l ifL + e A+R R +++e + ++
MMSYN1_0203 52 NYFFVSNEEFAKAIVNDELIEYAHFVGNSYGTPRKYV--EQELKKGNNVILEiEVDGATQVLnKEANvLSIFLMPpNLTELANRiRGRQTEDEEkIKA 147
56899999999*******9999999987766655554..47888999999983458899999456763579997513334444333333333332444 PP
TIGR00017 167 nleellae 174
l++ l e
MMSYN1_0203 148 RLDKALLE 155
44444433 PP
>> TIGR02173 cyt_kin_arch: putative cytidylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.0 0.0 0.0023 2.6 2 26 .. 6 30 .. 5 43 .. 0.81
2 ? 5.2 0.2 0.004 4.5 70 124 .. 93 151 .. 84 213 .. 0.60
Alignments for each domain:
== domain 1 score: 6.0 bits; conditional E-value: 0.0023
TIGR02173 2 iivisGpPGsGkttvakilaeklsl 26
+i+isGp G Gk +v +l ++ +l
MMSYN1_0203 6 MIIISGPSGVGKGSVNGELLQNPDL 30
699************9988776444 PP
== domain 2 score: 5.2 bits; conditional E-value: 0.004
TIGR02173 70 ekeknvvlesrlag..Wllk.eyaDvkiylkas.levraeriakrenksltealkeiie 124
+k +nv+le + g +l+ e ++i+l + l a+ri r+ + +++ +++ +
MMSYN1_0203 93 KKGNNVILEIEVDGatQVLNkEANVLSIFLMPPnLTELANRIRGRQTEDEEKIKARLDK 151
46677888877755113334144445788776524556788887777666555444433 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (297 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 354 (0.078877); expected 89.8 (0.02)
Passed bias filter: 148 (0.0329768); expected 89.8 (0.02)
Passed Vit filter: 26 (0.00579323); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 2030.98
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0203 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0213 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0213.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0213/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0213 [L=451]
Description: eno: phosphopyruvate hydratase 5=Equivalog Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-199 660.3 3.7 6.7e-199 658.8 3.7 1.6 1 TIGR01060 eno: phosphopyruvate hydratase
4.8e-09 33.7 0.3 0.00086 16.4 0.1 2.1 2 TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisom
------ inclusion threshold ------
0.024 11.6 0.2 0.041 10.9 0.0 1.4 2 TIGR01502 B_methylAsp_ase: methylaspartate ammonia-lyase
Domain annotation for each model (and alignments):
>> TIGR01060 eno: phosphopyruvate hydratase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 658.8 3.7 4.5e-202 6.7e-199 1 424 [. 4 448 .. 4 449 .. 0.95
Alignments for each domain:
== domain 1 score: 658.8 bits; conditional E-value: 4.5e-202
TIGR01060 1 ikdvearevldsrGnPtveveviledgtvgraivPsGastGekealelrdkdkkrylgkGvlkavenvneviapeliGldaldqaeidqilieldgte 98
i+++ are+ldsrG Ptvevev +e g +g a +PsGastG +ealelrd+dk ry+gkGvlkav+nvne+iap+liG+daldq ++d+i+++ldgte
MMSYN1_0213 4 IERIFAREILDSRGTPTVEVEVWTEFGGYGCAKAPSGASTGVNEALELRDGDKARYNGKGVLKAVKNVNEIIAPKLIGIDALDQLTVDRIMLDLDGTE 101
789*********************************************************************************************** PP
TIGR01060 99 nksklGanailavslavakaaakalelplyrylggvnalvlPvPllniinGGahadnkldlqefmivPvgaeslkealrlgaevfhalkkllkekgla 196
k+klGan ilavslavakaaa++l++ply+ylggv+a++lPvP+ln+inGG+had ++d+qefmi+Pvga+s++ealr+++e+f+alk+llk+k+
MMSYN1_0213 102 FKTKLGANGILAVSLAVAKAAASELDIPLYKYLGGVQAKKLPVPMLNVINGGEHADSAIDFQEFMIMPVGAKSFSEALRWSSETFQALKSLLKSKKDI 199
************************************************************************************************** PP
TIGR01060 197 tavGdeGGfaPnlksnee...............aleilveaiekagykpged.valaldvaasefydeekkkyvlkgeek......sltseelieyle 272
tavGdeGGfaPn++ + e al++lveai+kagykpg+d +++a+d+a+se+y e+k ky++k+ ek slt++e+i+yle
MMSYN1_0213 200 TAVGDEGGFAPNFEWAYEkhdlksfkaktpaeiALDLLVEAIKKAGYKPGKDgIMIAMDCASSELYLEDK-KYHFKKIEKvtnqewSLTTDEMISYLE 296
***********98643222222222223333349***************99879************9985.59998887778889999********** PP
TIGR01060 273 elvekypivsiedglseedwegfaeltkelGdkvqlvGddlfvtnaellkkGiekgvanailiklnqiGtltetleavklakkagytavishrsGete 370
+lv++ypi+siedgl+e dwegf++lt+++Gdkvq+vGddlf+tn++++k+Gi+k++an+ liklnqiGtl+et+ea+++ +kag+tav+shrsGete
MMSYN1_0213 297 KLVDNYPIISIEDGLAETDWEGFTKLTQKIGDKVQIVGDDLFTTNPKFIKQGISKKAANSTLIKLNQIGTLSETVEAITMTQKAGWTAVVSHRSGETE 394
************************************************************************************************** PP
TIGR01060 371 dttiadlavalnagqiktGslsrseriakynqLlrieeelgeeakyagkkafkk 424
dttiadlava+n+gqiktGs+srs+riakyn+Ll+ie+el+++a y g +af++
MMSYN1_0213 395 DTTIADLAVAFNTGQIKTGSMSRSDRIAKYNRLLQIESELEKNAVYDGLEAFYN 448
**************************************************9986 PP
>> TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.3 0.0 1.2e-06 0.0018 64 135 .. 69 146 .. 51 188 .. 0.75
2 ! 16.4 0.1 5.7e-07 0.00086 194 320 .. 280 413 .. 270 417 .. 0.82
Alignments for each domain:
== domain 1 score: 15.3 bits; conditional E-value: 1.2e-06
TIGR02534 64 vlidtylaPvlvgrkate...iaailadlekvvagnrf.ak..aavevalldaqakrlgvPvsellGGavrdkvdvlW 135
++++ +aP l+g++a + + i+ dl+ +++ a av a+ a a l++P+ + lGG +k++v
MMSYN1_0213 69 KNVNEIIAPKLIGIDALDqltVDRIMLDLDGTEFKTKLgANgiLAVSLAVAKAAASELDIPLYKYLGGVQAKKLPVPM 146
479999********9854455889******98777776243225899999**********************999853 PP
== domain 2 score: 16.4 bits; conditional E-value: 5.7e-07
TIGR02534 194 vnaaWd..elealkalkqlada.gvelieqPtaaedlealarltarl..evpimadeavtg.PedalelakksaadvialkiaksGGlleakevaaia 285
n+ W+ e + +l++l d + ie a d e++ +lt+++ +v i+ d+ t+ P+ + ++k+aa+ +k+++ G l+e+ e ++++
MMSYN1_0213 280 TNQEWSltTDEMISYLEKLVDNyPIISIEDGLAETDWEGFTKLTQKIgdKVQIVGDDLFTTnPKFIKQGISKKAANSTLIKLNQIGTLSETVEAITMT 377
5899972255799*****988636999******************98668*******987736667778999********************999999 PP
TIGR02534 286 kaag.ialyGatsleGpiGtiasahlfaaleelefG 320
+ ag a+ s e tia + ++ + +++ G
MMSYN1_0213 378 QKAGwTAVVSHRSGETEDTTIADLAVAFNTGQIKTG 413
888724556666777777788888887777777766 PP
>> TIGR01502 B_methylAsp_ase: methylaspartate ammonia-lyase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.8 0.0 0.79 1.2e+03 92 107 .. 71 86 .. 67 123 .. 0.70
2 ? 10.9 0.0 2.7e-05 0.041 293 373 .. 325 406 .. 292 414 .. 0.84
Alignments for each domain:
== domain 1 score: -3.8 bits; conditional E-value: 0.79
TIGR01502 92 vekavaekligrdvar 107
v++ +a+klig d+
MMSYN1_0213 71 VNEIIAPKLIGIDALD 86
6678889999888754 PP
== domain 2 score: 10.9 bits; conditional E-value: 2.7e-05
TIGR01502 293 drGvaaeivadewcntv.edvklfvdakaadlvqiktPdvGgvaesaravlyckandvgayvGGtcnetdlsaeasvhvala 373
+ G +++iv d+ t + +k + kaa+ ik +G++ e+ +a+ + + ++ a v et+ ++ a va+
MMSYN1_0213 325 KIGDKVQIVGDDLFTTNpKFIKQGISKKAANSTLIKLNQIGTLSETVEAITMTQKAGWTAVVSHRSGETEDTTIADLAVAFN 406
458899****999888625699****************************************99999998776555555544 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (451 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 153 (0.0340909); expected 89.8 (0.02)
Passed bias filter: 99 (0.0220588); expected 89.8 (0.02)
Passed Vit filter: 13 (0.00289661); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.22
# Mc/sec: 2943.89
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0213 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0214 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0214.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0214/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0214 [L=273]
Description: phosphatidylglycerophosphatase 3=Putative Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (273 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 331 (0.0737522); expected 89.8 (0.02)
Passed bias filter: 39 (0.00868984); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1782.00
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0214 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0215 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0215.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0215/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0215 [L=143]
Description: RNAse H domain protein, YqgF family 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.1e-24 82.0 0.2 1.1e-23 81.7 0.2 1.1 1 TIGR00250 RNAse_H_YqgF: putative transcription antiterminati
Domain annotation for each model (and alignments):
>> TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 81.7 0.2 2.4e-27 1.1e-23 1 130 [] 6 139 .. 6 139 .. 0.88
Alignments for each domain:
== domain 1 score: 81.7 bits; conditional E-value: 2.4e-27
TIGR00250 1 LalDlGtksiGvagqdetGltaqgleaikaqdaeqdy..eriekllkeykvdkivvGlPlnmdGtvgsltkrarkfakrleerf....gvevelqDer 92
+alD+G k+iG a ++ G++a +l++i+ ++++ + ++++ lk y++ ivvG+P+nm+ t+g++++ + + + + + ++ Der
MMSYN1_0215 6 IALDIGSKTIGLAYSS--GVIASSLDTIRFEEYNFNQglKQLDSYLKKYNPSIIVVGYPKNMNNTIGERAEMVDYVIEMFLDMYknfnEDQIIKIDER 101
58***********875..889***********9866555********************************998766655444411113568889*** PP
TIGR00250 93 LstveaeseliardgfralkkgkiDkvaavliLesyld 130
+t a++ li+++ r+++k+ D+ aa liLe yl+
MMSYN1_0215 102 RTTKIAKNILIQANLTREKQKKYKDSLAAQLILELYLE 139
************************************97 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (143 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 252 (0.0561497); expected 89.8 (0.02)
Passed bias filter: 94 (0.0209447); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1026.77
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0215 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0216 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0216.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0216/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0216 [L=190]
Description: HGPRTase: hypoxanthine phosphoribosyltransferase 5=Equivalog Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-59 197.6 0.8 3.2e-59 197.4 0.8 1.0 1 TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
2.4e-08 31.2 0.1 2.7e-08 31.1 0.1 1.2 1 TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
1.9e-06 25.9 0.1 3.1e-06 25.2 0.1 1.3 1 TIGR00201 comF: comF family protein
0.00014 19.6 0.0 0.00018 19.2 0.0 1.2 1 TIGR01091 upp: uracil phosphoribosyltransferase
0.0011 16.8 0.0 0.0037 15.0 0.0 1.7 1 TIGR00336 pyrE: orotate phosphoribosyltransferase
0.0052 14.4 0.0 0.009 13.6 0.0 1.3 1 TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
Domain annotation for each model (and alignments):
>> TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 197.4 0.8 4.3e-62 3.2e-59 1 166 [. 11 180 .. 11 181 .. 0.98
Alignments for each domain:
== domain 1 score: 197.4 bits; conditional E-value: 4.3e-62
TIGR01203 1 vliseeqikarikelakeieeeyagkke....lvvvgvLkGsilFladliralkvpvkvdfiavsSYgnsvessgevkilkdldedikdkdvLlveDi 94
vl + eqi++r+k +akeie+ y++k+ l+vvg+LkG+++F +d + ++++++df+ vsSY++s++s+ ++ki dl++d+kd+d+L+veDi
MMSYN1_0216 11 VLFTREQIQNRTKDIAKEIESYYKDKHLkdnsLLVVGLLKGCVPFYTDFCMVCDLTMEMDFMVVSSYHGSTSSNSAPKINLDLNTDVKDRDILIVEDI 108
78899********************8768899****************************************************************** PP
TIGR01203 95 vdtgltlkellellkarkpkslkivtlleKpsrrkvdvkvdfvgfeipdefvvGyglDyaelyRnlpyvgvl 166
+dtg+tlk+++e+l ++++ks+ki t+l+Kps rk+d+ +d+v+f+i+ fv+GyglDy+e+ Rnlpyv+v
MMSYN1_0216 109 IDTGFTLKYVKEYLLNKGAKSVKILTMLDKPSGRKIDLVADWVCFTIDPCFVIGYGLDYQEKIRNLPYVAVC 180
*********************************************************************986 PP
>> TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.1 0.1 3.6e-11 2.7e-08 203 245 .. 92 134 .. 19 148 .. 0.89
Alignments for each domain:
== domain 1 score: 31.1 bits; conditional E-value: 3.6e-11
TIGR01251 203 nllgdvegkdvvivDDiisTggTlvkaaelLkekGAkkvivaa 245
+l +dv+++d++iv Dii+Tg Tl e L +kGAk+v + +
MMSYN1_0216 92 DLNTDVKDRDILIVEDIIDTGFTLKYVKEYLLNKGAKSVKILT 134
5789***********************************8866 PP
>> TIGR00201 comF: comF family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.2 0.1 4.2e-09 3.1e-06 138 188 .. 84 135 .. 77 137 .. 0.91
Alignments for each domain:
== domain 1 score: 25.2 bits; conditional E-value: 4.2e-09
TIGR00201 138 nlenafklkvk.evqgrkivlvDDvvttGatlaeiaklllklgaaevqvlsL 188
n+ +++l ++ +v+ r i +v+D++ tG tl+ +++ ll++ga++v+ l++
MMSYN1_0216 84 NSAPKINLDLNtDVKDRDILIVEDIIDTGFTLKYVKEYLLNKGAKSVKILTM 135
6777899999889**********************************99986 PP
>> TIGR01091 upp: uracil phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.2 0.0 2.4e-07 0.00018 55 164 .. 27 141 .. 5 151 .. 0.79
Alignments for each domain:
== domain 1 score: 19.2 bits; conditional E-value: 2.4e-07
TIGR01091 55 tplgea.kakelkdkkvvlvpiLrAglglvegvlkllp...eakvglvglkRdeetlkievyys.klpedieerevivlDPmlAtGgtvvealellke 147
+++ k k+lkd+++++v++L+ +++ ++ +++ e +v+ + ++ + + l +d+++r++++++ ++ tG t+ + e l +
MMSYN1_0216 27 KEIESYyKDKHLKDNSLLVVGLLKGCVPFYTDFCMVCDltmEMDFMVVSSYHGSTSSNSAPKINlDLNTDVKDRDILIVEDIIDTGFTLKYVKEYLLN 124
4444331456788889*************9987766552227788899999988885555444326999***************************** PP
TIGR01091 148 kgakkikvlsivaapeg 164
kgak++k+l+++ p+g
MMSYN1_0216 125 KGAKSVKILTMLDKPSG 141
***********999988 PP
>> TIGR00336 pyrE: orotate phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.0 4.9e-06 0.0037 31 148 .. 19 139 .. 9 150 .. 0.68
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 4.9e-06
TIGR00336 31 antgkelanliaeliaa.lvkdelefdviaGpalkgiPiaaavsvklakpeg...diqllivRkeaKdhGeggkivG.elkegkkvvvveDvittGts 123
n k++a+ i+++ ++ +kd + + G+ + +P + +++ + ++ + + + + ++ +++ +++veD+i tG
MMSYN1_0216 19 QNRTKDIAKEIESYYKDkHLKD--NSLLVVGLLKGCVPFYTDFCMVCDLTMEmdfMVVSSYHGSTSSNSAPKINLDLnTDVKDRDILIVEDIIDTGFT 114
5666777777777765414566..6677888888888888877777776655422223333333333333333332212235567************* PP
TIGR00336 124 ileaveaiqeagaevagvivvldrq 148
++ e + + ga+ ++++ +ld+
MMSYN1_0216 115 LKYVKEYLLNKGAKSVKILTMLDKP 139
**********************985 PP
>> TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.6 0.0 1.2e-05 0.009 106 151 .. 100 145 .. 89 153 .. 0.89
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 1.2e-05
TIGR01367 106 ekvvvveDvvttGgsakeaikiieelGgqvvglaaiidrskgakld 151
+++veD++ tG ++k + + + ++G++ v + +++d+ g k+d
MMSYN1_0216 100 RDILIVEDIIDTGFTLKYVKEYLLNKGAKSVKILTMLDKPSGRKID 145
56899********************************997676665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (190 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 204 (0.0454545); expected 89.8 (0.02)
Passed bias filter: 168 (0.0374332); expected 89.8 (0.02)
Passed Vit filter: 15 (0.00334225); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1364.24
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0216 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0218 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0218.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0218/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0218 [L=505]
Description: glycerol_kin: glycerol kinase 5=Equivalog Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.5e-209 693.2 2.4 3.9e-209 693.0 2.4 1.0 1 TIGR01311 glycerol_kin: glycerol kinase
1e-65 220.1 0.2 1.2e-65 219.8 0.2 1.0 1 TIGR01312 XylB: xylulokinase
1.1e-43 147.4 1.5 3.8e-43 145.7 1.5 1.7 1 TIGR01314 gntK_FGGY: gluconate kinase
1.2e-29 101.5 1.4 1.5e-29 101.2 1.4 1.0 1 TIGR02628 fuculo_kin_coli: L-fuculokinase
1.3e-27 94.7 0.1 3.6e-13 47.0 0.0 2.1 2 TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase
5.5e-18 62.7 1.2 1.5e-11 41.5 0.4 2.1 2 TIGR02627 rhamnulo_kin: rhamnulokinase
9.6e-12 42.4 0.0 4e-09 33.7 0.0 2.2 2 TIGR01234 L-ribulokinase: ribulokinase
------ inclusion threshold ------
0.02 12.4 0.0 0.044 11.2 0.0 1.6 1 TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzym
Domain annotation for each model (and alignments):
>> TIGR01311 glycerol_kin: glycerol kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 693.0 2.4 7e-212 3.9e-209 1 496 [] 6 500 .. 6 500 .. 0.98
Alignments for each domain:
== domain 1 score: 693.0 bits; conditional E-value: 7e-212
TIGR01311 1 kliaaiDqGttssraivfdkegeevakaqkelsqifpkegwvEhdpleilesvvkvlaealekleikaeeiaaiGitnqREttvvWdketgkplvnai 98
k+i+++D+Gtts+ra++ dk+g+++a +q e++q+fpkegwvEhd+ ei+++++++l ++l+k++i++++i+aiGitnqREt+v+W+ketg p++nai
MMSYN1_0218 6 KYILTLDEGTTSARALITDKQGNIIAVEQSEFTQYFPKEGWVEHDAIEIWNTQRSALVQVLNKSGIDPSQIEAIGITNQRETAVIWNKETGLPIYNAI 103
69************************************************************************************************ PP
TIGR01311 99 vWqdtrtakiveelkeetkeeelrektGLplstYfsatKlrWlldnveevrkaaeegellfGtvdtwliykLtggkvhvtdvtNASRtlllnletlkw 196
vWqd+rta+++++ ++t e+++e++GL++++Yfs+tK++W+ldnv+++r+ a++g+l+fGt++twliy+Ltgg+v+vtd+tNA Rtll+n++t++w
MMSYN1_0218 104 VWQDQRTADYCQTFDKDTL-EMVKERSGLIINPYFSGTKVKWILDNVPNARQLAKDGKLMFGTINTWLIYRLTGGEVFVTDHTNAQRTLLYNIHTNDW 200
**************99865.799*************************************************************************** PP
TIGR01311 197 deellelfkipkellPeirsssevygeieeke...llkeevpitgvlGdqqaalvgqlclkkgeaKntYgtGcFlllntGekkviskhglLttvaykl 291
d+ell+lf+ip+++lPei+s+sevyg++ + +++++i++ +Gdqq+al+gqlcl+kg++K tYgtGcF+l+ntGe++v s+hglLttvay++
MMSYN1_0218 201 DDELLKLFDIPRNILPEIKSCSEVYGYTFKGLfskGNEQRIKIASSIGDQQSALFGQLCLEKGQVKVTYGTGCFILTNTGEEIVKSNHGLLTTVAYSF 298
**************************99999844455678********************************************************** PP
TIGR01311 292 ggkkptkyalEGsvavaGaavqwlrdnlklikkaeeveklaksvedsegvyfVPafsGLfaPyWdsdArgtivGltrkttkehiaraaleavafqard 389
++k +yalEGsv++aGaavqwlrdnl+++ +a e+e +a +v+d++ vy+VP+f+GL++PyWds rg+i+Gl r+t++ehi+ra+lea+a+qa+d
MMSYN1_0218 299 KDKV--YYALEGSVMIAGAAVQWLRDNLRIVYNAIETEWYAGQVKDDRRVYVVPSFTGLGSPYWDSFSRGAIFGLDRGTRREHIVRATLEAIAYQAND 394
9876..6******************************************************************************************* PP
TIGR01311 390 ileamekdagvevkvLkvDGglsknnllmqiqadilgvkverpkvaettalGaAlaaglavgvwkseeeleksaeaeektfepemdeeerekkykkwk 487
+++am kd+++ ++ +kvDGg+++n++lmq+q++i + kv +p+++etta+GaA++aglavg+w++ eel+k+ +++ +++pe ++ e +k +k wk
MMSYN1_0218 395 VVDAMGKDMKKPIEIFKVDGGAANNKFLMQFQSNISQSKVIKPTNVETTAMGAAFMAGLAVGYWENVEELKKTYKVH-FELTPELSKPEVDKLIKGWK 491
****************************************************************************8.99****************** PP
TIGR01311 488 eaverslkw 496
av+r+ kw
MMSYN1_0218 492 VAVQRTFKW 500
******998 PP
>> TIGR01312 XylB: xylulokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 219.8 0.2 2.2e-68 1.2e-65 3 455 .. 11 471 .. 9 491 .. 0.89
Alignments for each domain:
== domain 1 score: 219.8 bits; conditional E-value: 2.2e-68
TIGR01312 3 iDlgTssvKallvdekgeviasgsasltvispkpgwsEqdpeewlealeealkellekakeekkeikaisisGQmHglvlLDee.gkvlrpaiLWnDt 99
+D gT+s +al+ d++g++ia +++++t + pk+gw E d e ++ +al ++l+k+ ++++i+ai+i+ Q +v+ +e g ++++ai W D+
MMSYN1_0218 11 LDEGTTSARALITDKQGNIIAVEQSEFTQYFPKEGWVEHDAIEIWNTQRSALVQVLNKSGIDPSQIEAIGITNQRETAVIWNKEtGLPIYNAIVWQDQ 108
89******************************************************************************98763789********** PP
TIGR01312 100 rtaeeceeleeelgeeelleltgnlalegfTapKllWvrkhepev..fariakvlLP..kDylrykLtgev..vteysDAsGTllfdvkkrewskell 191
rta c++++++ e + e+ g ++ + f +K+ W+ ++ p++ a+ k++ +l y+Ltg vt++ A Tll+++++++w++ell
MMSYN1_0218 109 RTADYCQTFDKDT-LEMVKERSGLIINPYFSGTKVKWILDNVPNArqLAKDGKLMFGtiNTWLIYRLTGGEvfVTDHTNAQRTLLYNIHTNDWDDELL 205
**********999.59*************************99862256667888863368*******965459************************ PP
TIGR01312 192 kaldleesllPklvessekaGkvreevakklGleegvkvaaGggdnaagAiGlgivkegkvlvslGtSGvvlave.dkaesdpegavhsFchalpgk. 287
k +d+++++lP++ + se+ G + + + +k G e+ +k+a+ gd+ ++ G +++g+v v Gt +l+ + ++ +++++g +++ + + +k
MMSYN1_0218 206 KLFDIPRNILPEIKSCSEVYGYTFKGLFSK-GNEQRIKIASSIGDQQSALFGQLCLEKGQVKVTYGTGCFILTNTgEEIVKSNHGLLTTVAYSFKDKv 302
***********************9988776.89**********************************9877766515667788899999998876662 PP
TIGR01312 288 wypl.gvtlsatsalewlkellgeldveelneeaekvevg.aegvlllPylsGERtPhldpqargsliGltanttradlarAvlegvafalrdsldil 383
+y l g ++ a++a++wl+++l + +++++ e + +v v ++P ++G P+ d+ +rg ++Gl+ t r++++rA+le++a+ +d +d++
MMSYN1_0218 303 YYALeGSVMIAGAAVQWLRDNLR-IVYNAIETEWYAGQVKdDRRVYVVPSFTGLGSPYWDSFSRGAIFGLDRGTRREHIVRATLEAIAYQANDVVDAM 399
66675689999************.77777777655444432489****************************************************** PP
TIGR01312 384 kelkglkikeirliGGGaksevwrqiladilglevvvpeeeegaalGaAilAaialgekdlveecseavvkq 455
+ +i+ ++ GG a +++ q + +i++ +v +p++ e++a+GaA +A +a g ++vee++++ + +
MMSYN1_0218 400 GKDMKKPIEIFKVDGGAANNKFLMQFQSNISQSKVIKPTNVETTAMGAAFMAGLAVGYWENVEELKKTYKVH 471
*9887777777788888899999**********************************889999999877654 PP
>> TIGR01314 gntK_FGGY: gluconate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 145.7 1.5 6.8e-46 3.8e-43 1 472 [. 7 477 .. 7 499 .. 0.85
Alignments for each domain:
== domain 1 score: 145.7 bits; conditional E-value: 6.8e-46
TIGR01314 1 yligvdigttstkavlfeengkvvakesigyplytddvdvaeenleeifeavlvtikevskele.eekeikfvsfsaqmhs.lialdendkpltrlit 96
y++ +d gtts++a++ +++g+++a e+ + y ++ + e++ ei+++ ++ +v +++ + ++i+++ ++ q + +i e p+ ++i
MMSYN1_0218 7 YILTLDEGTTSARALITDKQGNIIAVEQSEFTQYFPKEGWVEHDAIEIWNTQRSALVQVLNKSGiDPSQIEAIGITNQRETaVIWNKETGLPIYNAIV 104
899************************************************999988888777615566*******998761556667778******* PP
TIGR01314 97 wadnraakyaekikeekngfeiykrtgtpihpmaplskiiwlkaerkdifqkaak....yleikeyifkrlfd..tyvidyslasatgllnlkeldwd 188
w d+r+a+y+++ +++ + +r+g i p +k+ w+ ++ ++ q a+ + i +++++rl + +v d++ a t l+n+++ dwd
MMSYN1_0218 105 WQDQRTADYCQTFDKDT-LEMVKERSGLIINPYFSGTKVKWILDNVPNARQLAKDgklmFGTINTWLIYRLTGgeVFVTDHTNAQRTLLYNIHTNDWD 201
**********9987543.456889********************999988877643344889*********96225678******************* PP
TIGR01314 189 kealelagikeeqlpklvetteilknlkeeyakkmgidketkfvigasdgvlsnlgvnaikkgevavtigtsgairtvidkpkt.dekg..rifcyal 283
+e l+l i ++ lp++ e+ + + g ++ k+ d + +g +++kg+v vt gt i t + ++g + +y++
MMSYN1_0218 202 DELLKLFDIPRNILPEIKSCSEVYGYTFKGLF-SKGNEQRIKIASSIGDQQSALFGQLCLEKGQVKVTYGTGCFILTNTGEEIVkSNHGllTTVAYSF 298
***********************987766654.5588999999999999999999********************99887654414556224567888 PP
TIGR01314 284 tee.hyviggpvnnggvvlrwlrdel..laseietakrlgvdpydvltkiakrvkpgadgllfhpylageraplwnanargsffgltlshkkehmira 378
+++ +y + g v g ++wlrd+l + + ie + y a +vk + p ++g +p w++ +rg++fgl+ + ++eh++ra
MMSYN1_0218 299 KDKvYYALEGSVMIAGAAVQWLRDNLriVYNAIE------TEWY------AGQVKDDR-RVYVVPSFTGLGSPYWDSFSRGAIFGLDRGTRREHIVRA 383
77636899****************9711334444......3334......55565443.34567999******************************* PP
TIGR01314 379 alegviynlytvalalvevvdetlkmikatggfaksevwrqllsdifesevvvpesyessclgaiilglkavgkiedlsavssmvgaterytpi 472
+le + y+ v+ a+ + ++++++ k gg a+ + q+ s+i +s+v+ p e++ +ga ++ avg e+++++++ + tp
MMSYN1_0218 384 TLEAIAYQANDVVDAMGKDMKKPIEIFKVDGGAANNKFLMQFQSNISQSKVIKPTNVETTAMGAAFMAGLAVGYWENVEELKKTYKVHFELTPE 477
******************************************************************************9998876666666665 PP
>> TIGR02628 fuculo_kin_coli: L-fuculokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 101.2 1.4 2.6e-32 1.5e-29 3 456 .. 8 469 .. 6 476 .. 0.81
Alignments for each domain:
== domain 1 score: 101.2 bits; conditional E-value: 2.6e-32
TIGR02628 3 vlvldcGatnlraiainekGkivasasvknetkqaiensdyhiwdleeilqklvecaqkv..qaevdekdilgiavttfGvdGapfdeq.gnqlypii 97
+l ld G+t ra+ +++G+i+a + e q + ++ + d ei++ + +v ++++d +i +i +t +++ g +y i
MMSYN1_0218 8 ILTLDEGTTSARALITDKQGNIIAVEQ--SEFTQYFPKEGWVEHDAIEIWNTQRSALVQVlnKSGIDPSQIEAIGITNQRETAVIWNKEtGLPIYNAI 103
899********************9875..5678899999***********877776644423589***********998766655554415568**** PP
TIGR02628 98 swkcprtvpvmenvereldakrlyrrnGiGdysfntlyklrwlkehkpql..lekmdkfvf..isslithrltG..efttditmaGtsmmtdltsrnf 189
w+ rt+ + +++ + +++r+G+ + + k++w+ ++ p+ l k k +f i + + rltG +f td+t a +++ ++ + ++
MMSYN1_0218 104 VWQDQRTADYCQTFDKDT-LEMVKERSGLIINPYFSGTKVKWILDNVPNArqLAKDGKLMFgtINTWLIYRLTGgeVFVTDHTNAQRTLLYNIHTNDW 200
***********9999874.5667889998888888889**********872255666777766999*******9667********************* PP
TIGR02628 190 dpailealGlseelfpplveaGekiGklrsdlakllGlnadvpvisaGhdtqfalfGsGa.eenqpvlssGtweilmarsqr.aelslealsaGvtve 285
d ++l+ ++++ +p ++ e+ G + l + G + + + s+ d q alfG e+ q ++ Gt +++ + + +s + l + v
MMSYN1_0218 201 DDELLKLFDIPRNILPEIKSCSEVYGYTFKGLFSK-GNEQRIKIASSIGDQQSALFGQLClEKGQVKVTYGTGCFILTNTGEeIVKSNHGLLTTV--A 295
**************************998888765.88888****************96526778889999988776655430333333333333..3 PP
TIGR02628 286 ldsqaglyn..pavqwlasgvvewvakllftaeta.sdelykvlieearkvangakgvvnletdlsslgqgaieGlslfttrGeiyraaleglakklk 380
+ + +y + +a + v+w+++ l +a e+y +++ r+v + +s +gai Gl t r +i ra+le +a + +
MMSYN1_0218 296 YSFKDKVYYalEGSVMIAGAAVQWLRDNLRIVYNAiETEWYAGQVKDDRRVYVVPSFTGLGSPYWDSFSRGAIFGLDRGTRREHIVRATLEAIAYQAN 393
33344444312466789999*****98765444331459999*******9988777766557889********************************9 PP
TIGR02628 381 rrldvlekvsqlkakelvvvGGGsknvlwnqiranaldlpvkvvddaeatvlGaalfafaGvGiyedveeaqaqlk 456
+ +d + k + + v GG ++n++ q ++n+ + v + e+t +Gaa++a vG +e+vee ++ k
MMSYN1_0218 394 DVVDAMGKDMKKPIEIFKVDGGAANNKFLMQFQSNISQSKVIKPTNVETTAMGAAFMAGLAVGYWENVEELKKTYK 469
99999988776555555556777788999*********99999999***********************9988766 PP
>> TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.6 0.1 1.7e-15 9.5e-13 3 206 .. 9 209 .. 7 216 .. 0.87
2 ! 47.0 0.0 6.4e-16 3.6e-13 378 504 .. 343 467 .. 302 487 .. 0.87
Alignments for each domain:
== domain 1 score: 45.6 bits; conditional E-value: 1.7e-15
TIGR01315 3 iGvdvGtGsaraaivdldGdvlelaaqkiktwrpssgleeqssdeiWqaicsvvkkvlaeakvdkssvkGiGfdatcslvvldkdgePlpvskegeae 100
+ +d Gt sara i d +G++ + + + + p+ g +e++ eiW++ s + +vl ++++d+s+++ iG +v+ +++ lp+
MMSYN1_0218 9 LTLDEGTTSARALITDKQGNIIAVEQSEFTQYFPKEGWVEHDAIEIWNTQRSALVQVLNKSGIDPSQIEAIGITNQRETAVIWNKETGLPI------- 99
56899************************************************************************99999999999998....... PP
TIGR01315 101 qniilWldhraeeeaekinatkhsllkyvGG.kvsvemevPkvlWlkenlpe..eleaagkf.f.dladfltyratGkeirslcsvvckwtflavdae 193
n i+W d r+ + ++ + +++k G + + kv W+ +n+p+ +l + gk+ f + l yr tG e+ + ++t l +
MMSYN1_0218 100 YNAIVWQDQRTADYCQTFDKDTLEMVKERSGlIINPYFSGTKVKWILDNVPNarQLAKDGKLmFgTINTWLIYRLTGGEVFVTDHTNAQRTLLYN-IH 196
599**************9998888888766615789999***********97224666666413268899*********9988888888887665.56 PP
TIGR01315 194 nksWdedflktig 206
++ Wd++ lk +
MMSYN1_0218 197 TNDWDDELLKLFD 209
6699999998766 PP
== domain 2 score: 47.0 bits; conditional E-value: 6.4e-16
TIGR01315 378 vkdlfvypdllGnrsPiadPnlrgviiGldmerdkdslallylatleaiaygtrqivealtaaG.aviksillsGgaaqnellvqlladicdlPvlip 474
+ ++v+p + G sP+ d rg+i Gld ++ ++ atleaiay+ ++v+a+ + ++i+ + Ggaa+n++l+q ++i + v+ p
MMSYN1_0218 343 DRRVYVVPSFTGLGSPYWDSFSRGAIFGLDRGTRREHIV---RATLEAIAYQANDVVDAMGKDMkKPIEIFKVDGGAANNKFLMQFQSNISQSKVIKP 437
4789**************************999999876...69****************98875888888899************************ PP
TIGR01315 475 dvqeavllGaailGakaagtaesleeamkr 504
e+ +Gaa + a g e +ee k
MMSYN1_0218 438 TNVETTAMGAAFMAGLAVGYWENVEELKKT 467
**********************99998775 PP
>> TIGR02627 rhamnulo_kin: rhamnulokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.5 0.4 2.7e-14 1.5e-11 3 244 .. 11 262 .. 9 287 .. 0.74
2 ! 20.2 0.0 7.9e-08 4.4e-05 361 454 .] 380 474 .. 375 474 .. 0.90
Alignments for each domain:
== domain 1 score: 41.5 bits; conditional E-value: 2.7e-14
TIGR02627 3 vdlGassGrvilaklenetkkltleeihrf..knklvsqdgyevWdidaleqeillGlkkvkeeGialdslGidtWgvdyvlldk.ngervgdpvsyr 97
+d G++s r +++ + + ++ e ++ k++ v++d e W+ ++ +++++ l+k +++++Gi v+ +k g + +++ ++
MMSYN1_0218 11 LDEGTTSARALITDKQGNIIAVEQSEFTQYfpKEGWVEHDAIEIWNTQR--SALVQVLNKSGIDPSQIEAIGITNQRETAVIWNKeTGLPIYNAIVWQ 106
5667777777777777776666666665543445666677777776553..56666677766667788999**99888888877516899******** PP
TIGR02627 98 dkrtdgvmakvqselgkeaiykktGiqflkfntlyqlkalkeenpdl..lekveklll..iPdylnyrltG..klvaeytnasttqllnieekkwdkd 189
d+rt + ++ ++ + e++ +++G+ ++ ++k + ++ p+ l+k kl++ i +l yrltG + v++ tna t l ni++++wd +
MMSYN1_0218 107 DQRTADYCQTFDKD-TLEMVKERSGLIINPYFSGTKVKWILDNVPNArqLAKDGKLMFgtINTWLIYRLTGgeVFVTDHTNAQRTLLYNIHTNDWDDE 203
******99877655.6799************9999***9999999861155555555355899*******94446789******************** PP
TIGR02627 190 lleylgvdaewfakitkpgsviG.....lleeldveevpvvavathdtasavvaaPlede 244
ll+ +++++++ +i++ +v G l+++ + +++++ a + d sa+ + ++
MMSYN1_0218 204 LLKLFDIPRNILPEIKSCSEVYGytfkgLFSKGNEQRIKI-ASSIGDQQSALFGQLCLEK 262
*********************9966554445555555554.4445677777766655555 PP
== domain 2 score: 20.2 bits; conditional E-value: 7.9e-08
TIGR02627 361 larcifdslallyrqvleelaelrgkdisklyivGGGsqnallnqliadlcgievia.GpveasalGnlgvqlialdeiedvaefrkivkksfel 454
+ r +++a ++v++ + + +k+i+ + + GG ++n++l q+ +++++ +vi ve++a+G + +a++ e+v+e +k k fel
MMSYN1_0218 380 IVRATLEAIAYQANDVVDAMGKDMKKPIEIFKVDGGAANNKFLMQFQSNISQSKVIKpTNVETTAMGAAFMAGLAVGYWENVEELKKTYKVHFEL 474
556677788888899****************************************983579***********************99998888876 PP
>> TIGR01234 L-ribulokinase: ribulokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 6.4 0.0 0.0014 0.77 1 94 [. 6 87 .. 6 106 .. 0.79
2 ! 33.7 0.0 7.1e-12 4e-09 363 495 .. 333 465 .. 312 482 .. 0.87
Alignments for each domain:
== domain 1 score: 6.4 bits; conditional E-value: 0.0014
TIGR01234 1 ayaiGvdfGtlsgralvvdvatGeelaaavkeyrravvdevldkteaklPadyalqhPadyievleaaikevlaelgvdpadvvGiGvdftast 94
+y++ +d Gt s+ral+ d ++G+ +a + e+ ++ +k + ++ + + ++ + a+ +vl++ g+dp ++ iG+ t
MMSYN1_0218 6 KYILTLDEGTTSARALITD-KQGNIIAVEQSEF-----TQYFPK------EGWVEHDAIEIWNTQRSALVQVLNKSGIDPSQIEAIGITNQRET 87
5888999999999999887.5688887665554.....566672......3577888888889999***************9999999766555 PP
== domain 2 score: 33.7 bits; conditional E-value: 7.1e-12
TIGR01234 363 sekaakqesgehglvaldWfnGnrsvlvdarlkGvlvgltlatkaeelyralveatafGtrmivetf.kesGvaveellaaGGiaeknplvmqiyadv 459
+e +a q + + ++ f G s+ d +G + gl t e++ ra +ea a+ + +v+++ k+ ++e + GG n+++mq +++
MMSYN1_0218 333 TEWYAGQVKDDRRVYVVPSFTGLGSPYWDSFSRGAIFGLDRGTRREHIVRATLEAIAYQANDVVDAMgKDMKKPIEIFKVDGGA-ANNKFLMQFQSNI 429
677788888888899999***********************************************9846677888877777775.89*********** PP
TIGR01234 460 lnlplkivasdqapalGaaifaavaageyadipkaa 495
+ ++ + ++a+Gaa a +a g ++++++ +
MMSYN1_0218 430 SQSKVIKPTNVETTAMGAAFMAGLAVGYWENVEELK 465
*****99********************999997654 PP
>> TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.2 0.0 7.9e-05 0.044 172 247 .. 370 449 .. 363 450 .. 0.65
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 7.9e-05
TIGR00241 172 llaagvkkedilagvaesvaervaellqrl..kveepi..vlv.GGvsklkalvkalekklg.kkvivpkesqlvgavGaal 247
l +g+++e i+ + e++a + +++ + ++++pi v GG++++k l+ +++++ kvi ++ +a+Gaa
MMSYN1_0218 370 GLDRGTRREHIVRATLEAIAYQANDVVDAMgkDMKKPIeiFKVdGGAANNKFLM-QFQSNISqSKVI-KPTNVETTAMGAAF 449
57789**************99877755544335566553155525555555555.555555515665.55556678999986 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (505 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 190 (0.0423351); expected 89.8 (0.02)
Passed bias filter: 151 (0.0336453); expected 89.8 (0.02)
Passed Vit filter: 16 (0.00356506); expected 4.5 (0.001)
Passed Fwd filter: 8 (0.00178253); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.25
# Mc/sec: 2900.81
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0218 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0220 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0220.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0220/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0220 [L=326]
Description: PFKA_ATP: 6-phosphofructokinase 5=Equivalog Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-127 422.5 6.7 2.1e-127 422.3 6.7 1.0 1 TIGR02482 PFKA_ATP: 6-phosphofructokinase
4.8e-81 270.3 6.1 1.8e-64 215.8 3.4 2.0 2 TIGR02483 PFK_mixed: phosphofructokinase
4.5e-77 257.8 5.0 1.3e-41 140.5 0.1 2.0 2 TIGR02478 6PF1K_euk: 6-phosphofructokinase
2.8e-19 66.9 3.3 6.8e-17 59.1 3.2 2.0 2 TIGR02477 PFKA_PPi: diphosphate--fructose-6-phosphate 1-phos
Domain annotation for each model (and alignments):
>> TIGR02482 PFKA_ATP: 6-phosphofructokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 422.3 6.7 1.8e-130 2.1e-127 1 300 [. 4 302 .. 4 303 .. 0.97
Alignments for each domain:
== domain 1 score: 422.3 bits; conditional E-value: 1.8e-130
TIGR02482 1 kigiLtsGGDapGmnaairavvktalaqglevygirkGykGliegeivkleskavseiiekGGtilksaRleeFkkeevrekavenlkklgiealvvi 98
kigiLtsGGDapGmn+ai+ vvkta ++g+evygi +GykGl++g+++kl+ ++ +i+++GGt l+saRl+eFk+ evr+kav+nlkk giealvvi
MMSYN1_0220 4 KIGILTSGGDAPGMNNAIAGVVKTAASKGIEVYGINDGYKGLVNGWFEKLNVEKTLDILSRGGTYLGSARLPEFKELEVRQKAVANLKKAGIEALVVI 101
8************************************************************************************************* PP
TIGR02482 99 GGdGsyaGakklaeeggikviglPgtiDnDiagtdytiGfDtalntileavdkirDtatsheraflvevmGreagdlallaaiatgaeiiivpeaeld 196
GGdGsy+Ga+kl+e+g i++iglPgtiDnDi +tdytiGf talnti+eavd+irDt++sh+ra +ve+mG+ +gdl++++a+atgaei+ e l+
MMSYN1_0220 102 GGDGSYMGAQKLTEMG-INCIGLPGTIDNDISSTDYTIGFHTALNTIVEAVDRIRDTMQSHNRADVVEIMGNGCGDLVTYTAVATGAEIFSPAEDLLT 198
*************999.********************************************************************************* PP
TIGR02482 197 ieelaekvkeqaekkkkksiiivaeeellgsakevakkieektgietRvtvlghvqRGGsPsafdRvlasrlgakaveallegksgvmigleenkiva 294
ie++ +k k+ + +kk+ ii+v e++ sa e+a+ki++ +g+et++tvlgh+qRGG+P+a+dR++a++ g+ ave+l egk g+ igle+nk+va
MMSYN1_0220 199 IEQMGQKAKQFRLLGKKSLIILVSEKSYGISAEEIAEKIQKISGYETKATVLGHIQRGGRPTAMDRYIAFTAGMFAVEKLAEGKGGLFIGLENNKLVA 296
***********9999986666666666666899***************************************************************** PP
TIGR02482 295 vpleea 300
+++ ++
MMSYN1_0220 297 RDIDST 302
**9875 PP
>> TIGR02483 PFK_mixed: phosphofructokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 215.8 3.4 1.6e-67 1.8e-64 1 224 [. 4 223 .. 4 226 .. 0.96
2 ! 56.4 0.0 5.2e-19 5.8e-16 246 322 .. 224 300 .. 222 303 .. 0.94
Alignments for each domain:
== domain 1 score: 215.8 bits; conditional E-value: 1.6e-67
TIGR02483 1 kigvltgGGDcpGLnaviravvkkaiaeygaevvgiregykGlleedlvklldledvegilarGGtilgssrtnpfkkeeeaedkikenlkelgldal 98
kig+lt+GGD+pG+n +i +vvk+a ++g ev+gi++gykGl++ + k l+ e++ +il rGGt+lgs+r fk+ e ++k+++nlk++g++al
MMSYN1_0220 4 KIGILTSGGDAPGMNNAIAGVVKTAA-SKGIEVYGINDGYKGLVNGWFEK-LNVEKTLDILSRGGTYLGSARLPEFKEL-EVRQKAVANLKKAGIEAL 98
8**********************776.89*************99976666.8************************965.67779************* PP
TIGR02483 99 iaiGGdgtlkiakelaekgglkvvGvPktiDnDleatdvtfGfdtaveiatealdrlkttaesheRvlvvevmGReaGwiaLesGlaggadviliPev 196
++iGGdg+ a++l+e g ++++G+P tiDnD+++td+t+Gf ta+++++ea+dr+++t +sh+R vve+mG G + ++ +a+ga++ e
MMSYN1_0220 99 VVIGGDGSYMGAQKLTEMG-INCIGLPGTIDNDISSTDYTIGFHTALNTIVEAVDRIRDTMQSHNRADVVEIMGNGCGDLVTYTAVATGAEIFSPAED 195
******************7.***********************************************************************99999** PP
TIGR02483 197 pfdidevvekveereergkkfaivvvae 224
i+++ +k ++ + gkk i++v+e
MMSYN1_0220 196 LLTIEQMGQKAKQFRLLGKKSLIILVSE 223
***************************9 PP
== domain 2 score: 56.4 bits; conditional E-value: 5.2e-19
TIGR02483 246 erlgGigkalaeeiekrlgkeaRavvLghlqRGgspsafDRvlatrfgvkavdlveegkfgkmvalkgedivavsie 322
+ +g ++++ae+i+k g e++a+vLgh+qRGg p+a+DR +a g+ av+ ++egk g ++ l ++++va +i+
MMSYN1_0220 224 KSYGISAEEIAEKIQKISGYETKATVLGHIQRGGRPTAMDRYIAFTAGMFAVEKLAEGKGGLFIGLENNKLVARDID 300
56777899***************************************************************998887 PP
>> TIGR02478 6PF1K_euk: 6-phosphofructokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 119.2 1.3 3.3e-38 3.7e-35 1 114 [. 3 114 .. 3 116 .. 0.98
2 ! 140.5 0.1 1.2e-44 1.3e-41 141 342 .. 118 308 .. 114 315 .. 0.90
Alignments for each domain:
== domain 1 score: 119.2 bits; conditional E-value: 3.3e-38
TIGR02478 1 kkiavltsGGDaqGmnaavravvraaiavgckvylireGyeGlvdGGdlikelkWedvsgilslGGtliGtarckefrereGrlkaaknlvkkgidal 98
kki++ltsGGDa+Gmn a+ vv++a ++g +vy i +Gy+Glv+G ++l+ e+ ils+GGt +G+ar ef+e e r ka++nl k gi+al
MMSYN1_0220 3 KKIGILTSGGDAPGMNNAIAGVVKTAASKGIEVYGINDGYKGLVNG--WFEKLNVEKTLDILSRGGTYLGSARLPEFKELEVRQKAVANLKKAGIEAL 98
79********************************************..************************************************** PP
TIGR02478 99 vviGGdGsLtgadlfr 114
vviGGdGs +ga+ +
MMSYN1_0220 99 VVIGGDGSYMGAQKLT 114
************9875 PP
== domain 2 score: 140.5 bits; conditional E-value: 1.2e-44
TIGR02478 141 LtivGlvgsiDnDlvgtDatiGadsalhriieavDaisstaashqrafvvevmGrhCGyLallaaiatgaDyvfiPeappeee.Wedelckklkrnrk 237
++ +Gl g iDnD+++tD tiG ++al+ i+eavD i +t +sh+ra vve+mG CG L +a+atga+ +f P e+ +++ +k k+ r
MMSYN1_0220 118 INCIGLPGTIDNDISSTDYTIGFHTALNTIVEAVDRIRDTMQSHNRADVVEIMGNGCGDLVTYTAVATGAE-IFSPA---EDLlTIEQMGQKAKQFRL 211
5789******************************************************************9.78774...3433689*********** PP
TIGR02478 238 kgkrktivivaeGaidselnkitsekvkevleerlkldtritvLGhvqrGGapsafDrllatlqGveavkavleatpetpskvislkenkivrkpLve 335
gk++ i++v+e ++ i++e++ e +++ +++t+ tvLGh+qrGG+p+a+Dr +a + G+ av+++ e + + i+l++nk+v +++ +
MMSYN1_0220 212 LGKKSLIILVSE-----KSYGISAEEIAEKIQKISGYETKATVLGHIQRGGRPTAMDRYIAFTAGMFAVEKLAEGK---GGLFIGLENNKLVARDIDS 301
**********98.....566799999999999889***********************************997765...6789999999999998888 PP
TIGR02478 336 aveqtke 342
+++++ke
MMSYN1_0220 302 TLNMKKE 308
7776665 PP
>> TIGR02477 PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.1 3.2 6e-20 6.8e-17 69 249 .. 4 173 .. 1 205 [. 0.88
2 ! 6.2 0.0 0.00062 0.7 396 455 .. 233 293 .. 210 309 .. 0.83
Alignments for each domain:
== domain 1 score: 59.1 bits; conditional E-value: 6e-20
TIGR02477 69 kvGvilsGgqapGGHnvilGlfdalkklnkeskLlGFlggpeGllknkyveltkelikeyrntGGfdiigsgr.tkieteeqfekaletvkklkldgl 165
k+G++ sGg+apG n i+G+ ++ ++ k +++G g +Gl++ +l+ e + GG +gs+r + + e +ka+ + kk +++l
MMSYN1_0220 4 KIGILTSGGDAPGMNNAIAGVVKT--AASKGIEVYGINDGYKGLVNGWFEKLNVEKTLDILSRGGT-YLGSARlPEFKELEVRQKAVANLKKAGIEAL 98
8*******************9876..4567789*******************99999999999996.6777773689999999*************** PP
TIGR02477 166 viiGGddsntnaalLAeyfakkklkikviGvPktidgDLknklietsfGFdtackvyseligniarDalsakkyyhFiklmGrs 249
v+iGGd s a L e + i+ iG+P tid D+ + + ++GF+ta + e + i rD++ +++ + +mG
MMSYN1_0220 99 VVIGGDGSYMGAQKLTE------MGINCIGLPGTIDNDISS--TDYTIGFHTALNTIVEAVDRI-RDTMQSHNRADVVEIMGNG 173
********999988876......68899**********987..5899*************9998.7888888889999999975 PP
== domain 2 score: 6.2 bits; conditional E-value: 0.00062
TIGR02477 396 kkegeykgk.FsavsHFfGYegRsalPsnFDsdYcyaLGytaalllangltGylstiknlk 455
+ e+ k++ +++ + +G+ R++ P++ D +++ G+ a+ la+g+ G + ++n k
MMSYN1_0220 233 IAEKIQKISgYETKATVLGHIQRGGRPTAMDRYIAFTAGMFAVEKLAEGKGGLFIGLENNK 293
33334455559999999***********************************999998855 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (326 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 264 (0.0588235); expected 89.8 (0.02)
Passed bias filter: 173 (0.0385472); expected 89.8 (0.02)
Passed Vit filter: 21 (0.00467914); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.22
# Mc/sec: 2127.95
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0220 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0221 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0221.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0221/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0221 [L=478]
Description: pyruv_kin: pyruvate kinase 5=Equivalog Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-154 511.9 2.6 3.8e-154 511.7 2.6 1.0 1 TIGR01064 pyruv_kin: pyruvate kinase
4.6e-05 21.1 0.1 7.2e-05 20.4 0.1 1.3 1 TIGR03239 GarL: 2-dehydro-3-deoxyglucarate aldolase
0.00031 18.2 0.0 0.00046 17.7 0.0 1.4 1 TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldol
Domain annotation for each model (and alignments):
>> TIGR01064 pyruv_kin: pyruvate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 511.7 2.6 2.5e-157 3.8e-154 1 458 [. 11 469 .. 11 477 .. 0.94
Alignments for each domain:
== domain 1 score: 511.7 bits; conditional E-value: 2.5e-157
TIGR01064 1 rrtkIvaTiGPateskevlkklldaGvnvvRlNfSHgsheehkkvienvrevaeklgkpvaillDtkGpeiRvgeikkeevklkkgekvilttdek.. 96
+rtk+++TiGP+t+s+e++k+l ++G++ +RlNfSHgs+eeh +i+ ++++++l+kp++i+lDtkGpeiR+g++k+++ ++ kg+ +++ td+
MMSYN1_0221 11 KRTKVITTIGPSTHSAEAIKELFNNGMTTIRLNFSHGSYEEHGYRIKAAKKISKALNKPISIILDTKGPEIRLGKFKDNKQEVVKGQSITIYTDTYsy 108
79*****************************************************************************************9998655 PP
TIGR01064 97 .keegseekvsvdykslvkdvkeGdkilvdDGkislkVveveedkvivevknggelkskkgvnlpgaevslpalsekDkkdlkfgveqgvdlvaaSFv 193
++e+ + +++v y+ + d+k+Gd il+dDGk++l+V +ve + +++++ n++ +k++k+vnlpg++ slp+lsekD kd+ fg+eqgvd++aaSFv
MMSYN1_0221 109 lNKECVQGEMTVAYD-MSVDLKPGDMILIDDGKLELTVDSVEPQIIKATAFNHHIVKTNKRVNLPGIDFSLPFLSEKDEKDILFGCEQGVDYIAASFV 205
67899999******9.999******************************************************************************* PP
TIGR01064 194 rkaedvkevrevleekgakdvkiiaKiEnqegvknideIikasdgimvARGDLGveipaeevpllQkklikkcreagkpvitATqmLdSmiknprPTR 291
++ae+v++++e+l++++a++++ii+KiE+q g++nideIi+ sdgim+ARGDLG+eip+++vp++ k +i+kcre gk vi+ATqmL++m++np PTR
MMSYN1_0221 206 NTAENVRQIKEILNKANANHIQIISKIESQVGLDNIDEIIEESDGIMIARGDLGLEIPYYDVPYWEKIIIRKCREKGKIVIVATQMLETMTENPSPTR 303
************************************************************************************************** PP
TIGR01064 292 AEvsDvanAvldGtdavMLSgEtakGkYPveaVkvmakiakeaekalekktelker.knskakkssieeavalaaveaaekakakaivvltesgrtar 388
AEv+Dv++A G+da+MLSgE+a+G+YP +V++m++i k+ae + +k ++ + n+++++s + ++a ++ +++ ++k+ +vl+++g+ +
MMSYN1_0221 304 AEVTDVYFATELGADATMLSGESAAGDYPFLTVHTMSTINKRAEVEFYNKIYYQVQlDNARNSTSGPRAEIADLLATKTKDGEYKYAIVLSKTGELLK 401
********************************************99876655555546777778889999**************************** PP
TIGR01064 389 llskyrpkapiiavtrnervarqlalsrGvfpvlvdeeeeelekalkkalellkekgilkkgdlvvviqa 458
+sk+rp+++i+ v++++++ ++ + ++f vd ++ l++ ++k e++k+ g g++v+v+
MMSYN1_0221 402 TISKFRPNVTILGVSPDKKLWTSFGVWHSIFMNKVDTLDN-LDNNIEKLSEIAKSWGAKL-GEKVLVVRS 469
***********************************75555.4888888888777777655.555555554 PP
>> TIGR03239 GarL: 2-dehydro-3-deoxyglucarate aldolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.4 0.1 4.8e-08 7.2e-05 117 179 .. 203 264 .. 130 282 .. 0.77
Alignments for each domain:
== domain 1 score: 20.4 bits; conditional E-value: 4.8e-08
TIGR03239 117 svaqrsnrygtvadyfkkindn.itvlvqiesrkgvdavdeiaavdgvdgvfvgpsdlaaalgy 179
s ++ +++ + + ++k n n i ++ +ies+ g+d++dei+ dg+++ +dl + y
MMSYN1_0221 203 SFVNTAENVRQIKEILNKANANhIQIISKIESQVGLDNIDEIIE--ESDGIMIARGDLGLEIPY 264
4445555667788889999977699*****************85..579*******99866655 PP
>> TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.7 0.0 3.1e-07 0.00046 120 184 .. 205 268 .. 132 327 .. 0.85
Alignments for each domain:
== domain 1 score: 17.7 bits; conditional E-value: 3.1e-07
TIGR02311 120 larasrfnripdylqqad.eeiclllqvetrealenleeiaaveGvdGvfiGPadlaaslGhlGnP 184
+ a + +i + l++a+ ++i ++ ++e++ +l+n++ei+ e dG++i dl ++ + P
MMSYN1_0221 205 VNTAENVRQIKEILNKANaNHIQIISKIESQVGLDNIDEII--EESDGIMIARGDLGLEIPYYDVP 268
456778899********945799****************95..788**********9888777666 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (478 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 286 (0.0637255); expected 89.8 (0.02)
Passed bias filter: 144 (0.0320856); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 3120.13
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0221 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0222 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0222.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0222/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0222 [L=639]
Description: thrRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.1e-173 574.1 6.9 1.1e-172 573.8 6.9 1.0 1 TIGR00418 thrS: threonine--tRNA ligase
7.8e-20 69.2 1.6 9.6e-11 39.2 0.6 2.4 2 TIGR00408 proS_fam_I: proline--tRNA ligase
2.8e-19 67.4 3.9 6.9e-12 43.0 0.0 3.2 3 TIGR00409 proS_fam_II: proline--tRNA ligase
4.5e-12 43.6 4.3 4.3e-08 30.5 0.0 3.1 3 TIGR00442 hisS: histidine--tRNA ligase
4.7e-10 36.6 0.5 1.5e-05 21.7 0.2 2.5 3 TIGR00389 glyS_dimeric: glycine--tRNA ligase
0.00086 16.8 0.1 0.28 8.6 0.0 2.4 2 TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC4
------ inclusion threshold ------
0.01 13.2 0.7 0.027 11.8 0.0 2.1 3 TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal r
Domain annotation for each model (and alignments):
>> TIGR00418 thrS: threonine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 573.8 6.9 1.8e-175 1.1e-172 24 564 .. 92 634 .. 77 635 .. 0.97
Alignments for each domain:
== domain 1 score: 573.8 bits; conditional E-value: 1.8e-175
TIGR00418 24 gpvvedgfyydvevekelaeedlekiekelkelakkklpvaklsvsleeakeafkvleklklelldeieeeeekvtvyeqgkafvdlckgphlselsr 121
+ + e +f +++e +l +dl++i+ ++++l +l+++ + +l++a+e+++ ++++++l +++ e+ + v vy+ ++ f + + + ++
MMSYN1_0222 92 YNADEMEFSTTFDTEPRLVLDDLKNIQTNINNLLTSNLEIKSNIYDLNKALEILN--NDYQKHLAKQMYEKYNYVKVYSIND-FYMVIDKALILNSNF 186
5677999**********************************************99..99***********************.66677777799**** PP
TIGR00418 122 ikafklekvagaywlgdekneelqriygiafekkkeLkeylkakeeakkrdHrklgkeleLfsfeeevgpGlvlwlpkGalirklledfvrekllkrg 219
ik ++ e+ g+ywl d++n +lqr+ g+ +++ eLk+ + +e++ +rdHr + k l++f f++ vg+Gl+lwlp+G ++++++e+++r+k +++
MMSYN1_0222 187 IKIIDIEQLTGSYWLNDKNNIMLQRVHGLCATSSSELKNKKVILEDRRSRDHRLINKTLNIFGFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYD 284
************************************************************************************************** PP
TIGR00418 220 yeevetPiladlelweisghldkykermfrfkeee...ekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEksGeLvGLkRvRgftldD 314
y +vetP + +el+++sgh+d+y e+mf+ + +++++l+pmnCp+hi+++k+++rsyrdLPlr++e ++ hR+E sG+L+GL+RvRg+ l D
MMSYN1_0222 285 YIPVETPPIGTVELYKTSGHWDHYGEDMFQPFNGGkgsDEQFILRPMNCPHHIAVYKQEQRSYRDLPLRICEHAIQHRFESSGSLTGLERVRGMKLTD 382
*****************************8755332448*********************************************************** PP
TIGR00418 315 aHifctedQikeEiknalrliqkvlkklglseekvelstrdpedk..yigedeewekaeakleealkeleveyeieegeaafygpKidfaikdaLkre 410
+Hif++ dQi++E+ ++++li +vlk+++++ + ++ls+rdp+dk ++ +d +w+kae++le++l +l+++ye+ g+aafygpK+d++ik+a + e
MMSYN1_0222 383 SHIFVRSDQIEDEFRSTYKLISEVLKTFNIQIDYLSLSLRDPNDKvkFYKDDLMWDKAESSLEKVLIDLGLKYEKRIGDAAFYGPKLDIQIKTAQNHE 480
*******************************9***********6558*************************************************** PP
TIGR00418 411 iqlaTvQlDfelperfdltyvdedekekrPviiHrailGsieRfiaiLlEkaagelPlwLaPvQvrvipvsekhldyakkvaeklkkegirvdvddrn 508
i+++T+QlDf +p++fdlty+d+d+k rP++iHr+++G++eRfia+LlE+++g l lwLaP Qv +ip+se+ l+ya+ + +klkke ir ++d r+
MMSYN1_0222 481 ITVSTIQLDFLMPNKFDLTYIDKDQKLVRPIMIHRGLIGTYERFIATLLEQTKGVLSLWLAPKQVEIIPISESNLEYANLIHQKLKKEFIRSHIDLRD 578
************************************************************************************************** PP
TIGR00418 509 eklgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleellekvrke 564
e+l++kiR+aq++k+py+lv+G+kEve++++t R+ ++ + +++++e++++++++
MMSYN1_0222 579 ERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQITVPIQEFIDMLKQQ 634
*****************************************************997 PP
>> TIGR00408 proS_fam_I: proline--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.4 0.0 2.8e-10 1.8e-07 29 182 .. 257 408 .. 246 429 .. 0.84
2 ! 39.2 0.6 1.5e-13 9.6e-11 233 383 .. 494 637 .. 472 639 .] 0.87
Alignments for each domain:
== domain 1 score: 28.4 bits; conditional E-value: 2.8e-10
TIGR00408 29 GlvvllpnsfkiwekiqkllddkldeieveevyfPllipeselekEkeHikGFepEvylitqaGkkkLeeklalRPtsEtvlynlykkwvksyrdLPl 126
Gl ++lpn+f ++++i k l++k e + v P + + el k H + + ++++ ++Gk +e+++lRP +yk+ +syrdLPl
MMSYN1_0222 257 GLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIGT-VELYKTSGHWDHYGEDMFQPFNGGKG-SDEQFILRPMNCPHHIAVYKQEQRSYRDLPL 352
8889*******************9999999999998655.56778999*********998887765.5999*************************** PP
TIGR00408 127 klnqivnvfRyEkkht.rPllRtrEflfkEaHtlhataeeaeeevlkildlYkelie 182
++ + R+E + l R+r + ++H +++ +++ e+e + +l e+++
MMSYN1_0222 353 RICEHAIQHRFESSGSlTGLERVRGMKLTDSH-IFVRSDQIEDEFRSTYKLISEVLK 408
************98552567788988888888.677777888887777777777766 PP
== domain 2 score: 39.2 bits; conditional E-value: 1.5e-13
TIGR00408 233 ktFeikfenkeg...ekayayqtsyGlstRvigaliliHsDdkGLvlPpkvapiqvvvipiifkkkenkkvlelarkveekLkkleiRvelderdnrp 327
+F++++ +k+ + ++ ++ G +R i++l+ kG vl +ap+qv +ip i ++ le+a+ +++kLkk iR ++d rd+r+
MMSYN1_0222 494 NKFDLTYIDKDQklvRPIMIHRGLIGTYERFIATLLE---QTKG-VLSLWLAPKQVEIIP-IS-----ESNLEYANLIHQKLKKEFIRSHIDLRDERL 581
5799999888876667788899999999****99995...4566.89999**********.43.....3447************************** PP
TIGR00408 328 GkkfskaElkGiPlrlevgpkdieknavvvlrRdekkKvevsldeleekvkellee 383
k +a k +P +l +g k++e+n+++ + ++ +++v+++e + +k+ +++
MMSYN1_0222 582 SYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQITVPIQEFIDMLKQQIND 637
*****************************999999999999999999999888775 PP
>> TIGR00409 proS_fam_II: proline--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.0 0.7 0.055 36 309 367 .. 137 194 .. 74 225 .. 0.74
2 ! 43.0 0.0 1.1e-14 6.9e-12 24 192 .. 243 414 .. 217 419 .. 0.85
3 ! 22.5 0.0 1.7e-08 1.1e-05 450 559 .. 523 625 .. 487 634 .. 0.78
Alignments for each domain:
== domain 1 score: 1.0 bits; conditional E-value: 0.055
TIGR00409 309 nelevaevlelateeeleakiaakkdllgavkinikievlvdrtvaaledfaaganadd 367
+ + +e+l+ + +++l +++ +k + +++ +in ++++++d++ + ++f + ++++
MMSYN1_0222 137 DLNKALEILNNDYQKHLAKQMYEKYNYVKVYSIN-DFYMVIDKALILNSNFIKIIDIEQ 194
2224678999999999999999999999999999.*********999999998777654 PP
== domain 2 score: 43.0 bits; conditional E-value: 1.1e-14
TIGR00409 24 klllraGfirrlasGlynylPlalrvlekvenivreemnkagaievllpalqsaelWqesgRwdkygeellr.lkDrk..erefvLgpthEEvitdlv 118
k l Gf + +++Gl +lP ++ v +++e+ +r++ + + i v p + + el+++sg wd+yge++++ ++ k + +f+L p ++
MMSYN1_0222 243 KTLNIFGFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIGTVELYKTSGHWDHYGEDMFQpFNGGKgsDEQFILRPMNCPHHIAVY 340
44556799999***********************************************************9856655422789*****99999999** PP
TIGR00409 119 kneiksYkqlPvnlYqiqtKfRDEiR.PRfGllRgREFimKDaYsFhsdeeslkatyqkldeaYkkifsrlgldf 192
k+e +sY++lP+ + ++R E Gl R R + D+ F + +++++++ +++ +++++ +++++
MMSYN1_0222 341 KQEQRSYRDLPLRICEHAIQHRFESSgSLTGLERVRGMKLTDSHIFVRS-DQIEDEFRSTYKLISEVLKTFNIQI 414
**************9877777777651568****************876.579999**********999887765 PP
== domain 3 score: 22.5 bits; conditional E-value: 1.7e-08
TIGR00409 450 RlvsaivEqkrDekGiiWpkaiAPyevvivvsnvkdeeqkklaeevyselkakgvdvllDdrneraGvkfrdseliGiplavvvGkksldnkeiEvkk 547
R +++ +Eq + G+ + +AP +v i++ + ++a+ ++++lk++ + +D r+er+ k+rd + +p+++v+G+k+++n+ i +++
MMSYN1_0222 523 RFIATLLEQTK---GV-LSLWLAPKQVEIIPISES---NLEYANLIHQKLKKEFIRSHIDLRDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQ 613
66666666654...33.234589*******98755...5999999*************************************************9987 PP
TIGR00409 548 rrngekqlikka 559
+ + ++ ++
MMSYN1_0222 614 YGSDAQITVPIQ 625
766555555555 PP
>> TIGR00442 hisS: histidine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.5 1.3 0.17 1.1e+02 124 234 .. 52 154 .. 49 181 .. 0.61
2 ! 12.6 0.0 1.8e-05 0.011 9 110 .. 261 364 .. 256 436 .. 0.85
3 ! 30.5 0.0 6.8e-11 4.3e-08 316 405 .. 534 623 .. 518 624 .. 0.86
Alignments for each domain:
== domain 1 score: -0.5 bits; conditional E-value: 0.17
TIGR00442 124 dvevvGsespladaeiialaaelleelglkevtleinslgilegrle..lsyreallryldkkldklgedsvrrleknplrildskaeklkellkeap 219
d e++ ++s ++d+ +++l+a+++++ + ns +++++ ++ +++ + +d + +l d +++++n ++l+s+ e ++ + +
MMSYN1_0222 52 DLELITNKSKEYDL-MLNLTAAFITSYAI-------NSFKSISQAENfyNADEMEFSTTFDT-EPRLVLDDLKNIQTNINNLLTSNLEIKSNIYDL-N 139
55555555555554.34455555555555.......55555555544422688999999999.889999999999999888888887777766666.4 PP
TIGR00442 220 kildflkeesleele 234
k l+ l+++ +++l
MMSYN1_0222 140 KALEILNNDYQKHLA 154
555666665555543 PP
== domain 2 score: 12.6 bits; conditional E-value: 1.8e-05
TIGR00442 9 llpeeaekrqkveetirevfesygfeeietPilEktellkrkvGeetdivekemYs.fed..kggrslaLRpelTapvvRavvenklelkk.pfklyy 102
+lp+ ++++++e+ +r+ +y + ++etP + ++el+k++ + d ++m++ f+ +++++ LRp + ++ +++++++ p+++ +
MMSYN1_0222 261 WLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIGTVELYKTSG--HWDHYGEDMFQpFNGgkGSDEQFILRPMNCPHHIAVYKQEQRSYRDlPLRICE 356
8999999********************************9984..6699******955444233699*****99888888888777766666899888 PP
TIGR00442 103 igpvFRyE 110
++ R E
MMSYN1_0222 357 HAIQHRFE 364
87777766 PP
== domain 3 score: 30.5 bits; conditional E-value: 6.8e-11
TIGR00442 316 glleeekkkadvlvvaldeeaeaealklaeklrkagirvevdlegkklkkqlkyadkkgakfvvilgedelekgkvtlkdletgeqeeva 405
g+l+ + ++v +++++e++ ++a + +kl+k+ ir ++dl++++l+ +++ a++k++++ ++lg++e+e++++t ++ +++q +v+
MMSYN1_0222 534 GVLSLWLAPKQVEIIPISESNLEYANLIHQKLKKEFIRSHIDLRDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQITVP 623
3333367889999********************************************************************999999887 PP
>> TIGR00389 glyS_dimeric: glycine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.4 0.0 1.5e-05 0.0096 33 86 .. 262 314 .. 250 326 .. 0.88
2 ? -3.6 0.0 1.1 6.8e+02 202 229 .. 371 397 .. 340 416 .. 0.54
3 ! 21.7 0.2 2.3e-08 1.5e-05 465 564 .. 536 634 .. 522 635 .. 0.91
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 1.5e-05
TIGR00389 33 gPlGaelknnikkawrkffileeevlevdspiltpeevlkasGHvdkFtDalve 86
P G +kn+i+k +r++ e + + v++p + + e++k+sGH d++ + + +
MMSYN1_0222 262 LPNGFIVKNEIEKYLRQKE-WEYDYIPVETPPIGTVELYKTSGHWDHYGEDMFQ 314
699999*****99999875.678899**********************988876 PP
== domain 2 score: -3.6 bits; conditional E-value: 1.1
TIGR00389 202 gllRvrEFeqaEiefFvdPeekshekFe 229
gl Rvr + + +Fv ++ +++F
MMSYN1_0222 371 GLERVRGMKLTDSHIFVRS-DQIEDEFR 397
4444444444444444444.33333333 PP
== domain 3 score: 21.7 bits; conditional E-value: 2.3e-08
TIGR00389 465 lkpkvaPikvlvlplvnkeelkeiakeiakaLrkeeiiikyddsgs.iGkrYaraDeiGtpfavtiDfetleDetvtlReRdslkqvRvkieelvsal 561
l +++aP +v ++p+++ +l e a+ i ++L+ke i+ ++d + + + + a +p+ + + + +e++t+t R+ s +q v i+e +++l
MMSYN1_0222 536 LSLWLAPKQVEIIPISES-NL-EYANLIHQKLKKEFIRSHIDLRDErLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQITVPIQEFIDML 631
4569***********998.55.67899***************988879999999999***************************************** PP
TIGR00389 562 kkl 564
k++
MMSYN1_0222 632 KQQ 634
986 PP
>> TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.5 0.2 0.0039 2.5 113 190 .. 86 164 .. 47 178 .. 0.73
2 ! 8.6 0.0 0.00044 0.28 113 158 .. 270 314 .. 264 325 .. 0.89
Alignments for each domain:
== domain 1 score: 5.5 bits; conditional E-value: 0.0039
TIGR00345 113 dellkelkeaenefDvvifDtAPTGhtlrlLqlpevlskflekliklkeklgellkllmgkee..eeevlekleelkeqi 190
+ + ++ e ef + fDt P l ++ +++++l+++ ++k++++ l k+l + ++ ++++ ++++e ++ +
MMSYN1_0222 86 SQAENFYNADEMEFST-TFDTEPRLVLDDLKNIQTNINNLLTSNLEIKSNIYDLNKALEILNNdyQKHLAKQMYEKYNYV 164
4555555555566655.57888876666677788899********************97766654666777777655544 PP
== domain 2 score: 8.6 bits; conditional E-value: 0.00044
TIGR00345 113 dellkelkeaenefDvvifDtAPTGhtlrlLqlpevlskfleklik 158
+e+ k+l ++e e+D++ ++t P G t+ l ++ + ++++ e + +
MMSYN1_0222 270 NEIEKYLRQKEWEYDYIPVETPPIG-TVELYKTSGHWDHYGEDMFQ 314
5789*********************.799*********99888765 PP
>> TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.5 0.2 0.96 6.2e+02 45 75 .. 129 159 .. 111 194 .. 0.64
2 ? 11.8 0.0 4.2e-05 0.027 77 122 .. 323 369 .. 270 416 .. 0.84
3 ? -3.3 0.0 1.7 1.1e+03 147 179 .. 441 472 .. 437 489 .. 0.77
Alignments for each domain:
== domain 1 score: -2.5 bits; conditional E-value: 0.96
TIGR02367 45 vevkspiliskellekmtideddelfkqvfr 75
+e+ks i ++le + d +++l kq++
MMSYN1_0222 129 LEIKSNIYDLNKALEILNNDYQKHLAKQMYE 159
6777777777788888888888888888763 PP
== domain 2 score: 11.8 bits; conditional E-value: 4.2e-05
TIGR02367 77 dekkclrpmlapnlynllrkldrllek.pirifeiGscyrkesdGse 122
de++ lrpm p ++++ +r + + p+ri e +r es Gs
MMSYN1_0222 323 DEQFILRPMNCPHHIAVYKQEQRSYRDlPLRICEHAIQHRFESSGSL 369
899******************9999766****************984 PP
== domain 3 score: -3.3 bits; conditional E-value: 1.7
TIGR02367 147 eelikevleelGideyeleadesvvyGdtvdvm 179
e+ +++vl +lG+ +ye ++ yG +d+
MMSYN1_0222 441 ESSLEKVLIDLGL-KYEKRIGDAAFYGPKLDIQ 472
5556788889999.8999999999999999985 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (639 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 263 (0.0586007); expected 89.8 (0.02)
Passed bias filter: 107 (0.0238414); expected 89.8 (0.02)
Passed Vit filter: 15 (0.00334225); expected 4.5 (0.001)
Passed Fwd filter: 7 (0.00155971); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.21
# Mc/sec: 4369.67
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0222 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0227 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0227.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0227/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0227 [L=441]
Description: pdhC 4=Probable Metabolic process
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-98 329.3 12.7 1.2e-98 329.1 12.7 1.0 1 TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyl
5.7e-78 261.1 13.0 7.7e-78 260.6 13.0 1.0 1 TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 comp
3.4e-75 251.7 11.4 1e-74 250.2 11.4 1.7 1 TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransfer
6.4e-74 247.6 13.2 1.2e-73 246.7 13.2 1.6 1 TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dih
7.7e-08 28.4 1.0 1.1e-07 28.0 1.0 1.1 1 TIGR02712 urea_carbox: urea carboxylase
7.9e-08 29.6 5.0 0.00012 19.1 1.0 2.3 2 TIGR01730 RND_mfp: efflux transporter, RND family, MFP subun
8.4e-08 28.1 1.9 1.1e-07 27.7 1.9 1.1 1 TIGR01235 pyruv_carbox: pyruvate carboxylase
1e-07 28.8 1.5 1e-07 28.8 1.5 1.7 2 TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
3.5e-05 22.3 3.6 3.5e-05 22.3 3.6 3.0 3 TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carr
0.00044 18.2 0.6 0.0011 17.0 0.6 1.6 1 TIGR03077 not_gcvH: glycine cleavage protein H-like protein
0.0016 15.5 5.4 0.016 12.1 0.2 2.2 2 TIGR01843 type_I_hlyD: type I secretion membrane fusion prot
0.0021 15.0 5.2 0.0045 13.9 1.2 2.2 2 TIGR00998 8a0101: efflux pump membrane protein
0.0027 14.6 4.1 0.22 8.3 0.7 2.2 2 TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion
0.0058 13.2 1.4 0.011 12.3 1.4 1.3 1 TIGR01945 rnfC: electron transport complex, RnfABCDGE type,
0.007 14.4 0.3 0.007 14.4 0.3 2.2 2 TIGR00527 gcvH: glycine cleavage system H protein
Domain annotation for each model (and alignments):
>> TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 329.1 12.7 4.1e-101 1.2e-98 157 586 .. 3 440 .. 1 441 [] 0.89
Alignments for each domain:
== domain 1 score: 329.1 bits; conditional E-value: 4.1e-101
TIGR01348 157 evkvPdiGd.aekvevievlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGdkvktGdlilvlevegaapaaaeapakaeaaaaapaa 253
+vk diG+ +++v evlvkvGd v+++qsl +e+dk e+Pap++G + +++k G ++k+Gd+++ ++ + a a+e +a+a+ +a+ +
MMSYN1_0227 3 KVKFADIGEgLTEGTVAEVLVKVGDVVKEGQSLYFVETDKVNSEIPAPVAGKIAVINIKAGQEIKVGDVVMEIDEGSGASVASEPKAEAKQEAKVEVV 100
68999***9999*************************************************************9887777777665666666666666 PP
TIGR01348 254 eaeeaaaapaaakaeakapvdantendakvdhaaPavrrlarelGvdlskvkgtgkkGrilredvqkfvkeav........kraeaaaaaaaggipgl 343
e++++ +++ + + +a+t+ ++ +a+P+ r++a +l +dls v tg++ ril d++++ ++ + + a+ a ++ p +
MMSYN1_0227 101 EENASVVGATPVSNDLIVRKQASTVTKSSTIKATPLARKVAADLNIDLSLVTPTGPNQRILVADIKNYHSSSAqpasqpapTPTLVASQPAPAPTPAI 198
6666655666556666677778887776666*************************************988774444333322233444455666677 PP
TIGR01348 344 lPlPk.vdfskfGeveevelsrikkisganlarnWvmiPhvtqfdkaditelealrkqqneeaakekegvkltvlaillkavaaalkklPkfnaslde 440
+P k v+ s +ev++ +++k++++ ++++ + i t + ++dite ++r ++++ aa+ g+klt la+++kava+ l+++P+ n d
MMSYN1_0227 199 TPAIKvVEPSAPLSWDEVPMNGVRKATVKAMTKSHTEIAAFTGMKNTDITETHKMRTELKDHAAA--SGIKLTYLAFIIKAVAKSLRDMPNINVRGDF 294
7755525778888899********************************************88876..6****************************** PP
TIGR01348 441 dgerlilkkyvniGvavdtPnGllvPvikdvdrkgivelarelsdlakkardkkltademqGacftisslGgiGgtaftPivnaPevailGvsksale 538
+++ + + +niG+avdtPnGl+vPvik +d+ ++ e+a ++s+la+ka+d+klt +em a+ft+s++G +G tPi+n+Pe ailGv +
MMSYN1_0227 295 ANNKIQFMHNINIGIAVDTPNGLMVPVIKGADHLSVFEIAIKISELANKAKDGKLTRAEMTEATFTVSNFGSVGLDYATPIINSPESAILGVGTMSQT 392
************************************************************************************************** PP
TIGR01348 539 PvWdgkefePrlllPlslsydhrvidGadaarflkylselladirrll 586
P++ + e++ r ++Pls++ dhr+idGada rfl +++ l+ + +l
MMSYN1_0227 393 PLYINGELQKRFIMPLSMTCDHRIIDGADAGRFLIKVQDYLSKPVLLF 440
*****************************************9887775 PP
>> TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 260.6 13.0 2.6e-80 7.7e-78 129 568 .. 4 433 .. 2 437 .. 0.85
Alignments for each domain:
== domain 1 score: 260.6 bits; conditional E-value: 2.6e-80
TIGR02927 129 vempelGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspvaGtlleilaeeddtvevGavlakiGddagaedepkeeekpekseakseek 226
v+ ++Ge +teGtv++ l vGd v+ + l v tdkv++eip+pvaG + i ++ + ++vG v+ +i + +ga+ + e+ k+eak+e k
MMSYN1_0227 4 VKFADIGEGLTEGTVAEVLVKVGDVVKEGQSLYFVETDKVNSEIPAPVAGKIAVINIKAGQEIKVGDVVMEIDEGSGAS--VASEP---KAEAKQEAK 96
78889*******************************************************************9844444..34444...356666777 PP
TIGR02927 227 peaaepkaekkeepkpepkaeekapaakaatektaadsspyvtplvrklakekGvdlssvkGtGvGGrirkqdvlaaaeaaeeakeaaaaeaa....a 320
e+ e++a + p ++ + +a++ t+ s+ tpl rk+a++ +dls v+ tG ri d++ +++ +++ +a ++
MMSYN1_0227 97 VEVVEENASVVG-ATPVSNDLIVRKQASTVTK----SSTIKATPLARKVAADLNIDLSLVTPTGPNQRILVADIKNYHSSSAQPASQPAPTPTlvasQ 189
777777777776.6676666655555555333....455668*******************************9976665555555444443311002 PP
TIGR02927 321 aapaapaaakka...pepekaklrGttqkvnrirqitakktveslqisaqltqvhevdvtrvaalrarakaefaekeGvnltflpffvkavvealkah 415
apa + a ++a +ep a l +n +r+ t k + +s a +t +++ d+t ++r+ k+ a+ G++lt+l f++kav ++l+
MMSYN1_0227 190 PAPAPTPAITPAikvVEPS-APLSWDEVPMNGVRKATVKAMTKSHTEIAAFTGMKNTDITETHKMRTELKD-HAAASGIKLTYLAFIIKAVAKSLRDM 285
2222222444444325554.55999999**************************************99885.67889********************* PP
TIGR02927 416 pnvnasyneetkevtyhdaehlgiavdtprGllspviknagdlslpglakaiadlaarardnklkpdelsGgtftitniGseGalfdtpilvppqaai 513
pn+n + ++ + ++giavdtp+Gl++pvik a+ ls+ ++a +i++la++a+d+kl e++ +tft++n Gs G + tpi++ p+ ai
MMSYN1_0227 286 PNINVRGDFANNKIQFMHNINIGIAVDTPNGLMVPVIKGADHLSVFEIAIKISELANKAKDGKLTRAEMTEATFTVSNFGSVGLDYATPIINSPESAI 383
*******9999*************************************************************************************** PP
TIGR02927 514 lGtGaivkrprvikdedGnesiairsvvylpltydhrlvdGadagrflttikkrl 568
lG+G++ + p i+ + r ++ l++t dhr++dGadagrfl+ +++ l
MMSYN1_0227 384 LGVGTMSQTPLYING-----ELQKRFIMPLSMTCDHRIIDGADAGRFLIKVQDYL 433
*************93.....4677999************************9987 PP
>> TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succiny
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 250.2 11.4 3.3e-77 1e-74 2 400 .. 3 439 .. 2 441 .] 0.84
Alignments for each domain:
== domain 1 score: 250.2 bits; conditional E-value: 3.3e-77
TIGR01347 2 eikvPelaesvteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaeleessaaaeaasekskeekeekaaak 99
++k +++e +te+tvae kvGd+vk+++ + +etDkv+ e++++++G ++ ++ k g+ +++g+v+ e++e+s a+ ase+++e+k+e++++
MMSYN1_0227 3 KVKFADIGEGLTEGTVAEVLVKVGDVVKEGQSLYFVETDKVNSEIPAPVAGKIAVINIKAGQEIKVGDVVMEIDEGSGASV-ASEPKAEAKQEAKVEV 99
588899********************************************************************9554433.3334444444444444 PP
TIGR01347 100 aekakeaaekk....................kalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaak...aakaaena.... 170
+e++++ ++ +++p ark+a++ +idl+ v+ t++++r+ +di++++++ a++a+++a + a+++ a
MMSYN1_0227 100 VEENASVVGATpvsndlivrkqastvtksstIKATPLARKVAADLNIDLSLVTPTGPNQRILVADIKNYHSSSAQPASQPAPTptlVASQP--Apapt 195
444333332223345566666677777777799********************************99988877444333322200011111..11223 PP
TIGR01347 171 .............atrseeRvkmtRlrqriaerLleaknstamLttFnevdmsavmelRkkykeefekkhgvklGFmsffvkavvealkefPevnaei 255
a s + v+m+ +r+ + + +++ ++a t ++ d+++ ++R + k++ + g+kl +++f +kav+++l+++P++n
MMSYN1_0227 196 paitpaikvvepsAPLSWDEVPMNGVRKATVKAMTKSHTEIAAFTGMKNTDITETHKMRTELKDHA-AASGIKLTYLAFIIKAVAKSLRDMPNINVRG 292
44445444445444455678*******************************************986.578*************************776 PP
TIGR01347 256 d..gddivykkylDisvavstdkGLvvPvvRdadalsladiekeikelakkaregklaledltgGtFtitnGGvfGsllstPiinppqsaiLGmhaik 351
d +++i + ++++i++av t++GL+vPv++ ad+ls+ +i +i+ela+ka++gkl+ ++t tFt++n G G ++tPiin+p saiLG+ ++
MMSYN1_0227 293 DfaNNKIQFMHNINIGIAVDTPNGLMVPVIKGADHLSVFEIAIKISELANKAKDGKLTRAEMTEATFTVSNFGSVGLDYATPIINSPESAILGVGTMS 390
522799******************************************************************************************** PP
TIGR01347 352 eRPvavngkieirPmmYlaLsYDhRliDGkeavtFLvkikelledperl 400
+ P+ +ng+++ r +m l+++ DhR+iDG +a FL+k+++ l +p l
MMSYN1_0227 391 QTPLYINGELQKRFIMPLSMTCDHRIIDGADAGRFLIKVQDYLSKPVLL 439
******************************************9998655 PP
>> TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 246.7 13.2 4.1e-76 1.2e-73 9 436 .. 11 440 .. 3 441 .] 0.87
Alignments for each domain:
== domain 1 score: 246.7 bits; conditional E-value: 4.1e-76
TIGR01349 9 PtmeeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknyklessasapkpkekaeqs 106
++eG++a+ +k GD vkeG+ + +etDk ++ + g +a i +++g + ++v+ ++ + e +s as+pk+++k+e +
MMSYN1_0227 11 EGLTEGTVAEVLVKVGDVVKEGQSLYFVETDKVNSEIPAPVAGKIAVINIKAGQE-IKVGDVVMEIDEG--S---------GASVASEPKAEAKQEAK 96
5689************************************************977.****976433222..2.........22233334444444433 PP
TIGR01349 107 aeesaesakseasaekakessseaeaskkeskdrifasPlAkklAkekgidLsavkGsGPngRivkkDiesfvpkkkesaqeaaaaktpatk...... 198
e +e a+ +++ +++ + +as+ +++ i a+PlA+k+A + +idLs v+ +GPn Ri+ +Di+++++++ ++a++ a + t ++
MMSYN1_0227 97 VEVVEENASVVGATPVSNDLIVRKQASTVTKSSTIKATPLARKVAADLNIDLSLVTPTGPNQRILVADIKNYHSSSAQPASQPAPTPTLVASqpapap 194
4444555666677778888888888888888889****************************************977777753333333333466677 PP
TIGR01349 199 ........kaaapvetgeyedvplsniRkviakRLleskqtiPhyylsvevnvdkllklrkelnaaaee.rvklsvnDlivkAvalAlrevPevns.. 285
k+++p+ + ++ +vp++ +Rk + k +++s++ i + + ++ + k+r+el+ a +kl +i+kAva+ lr++P++n+
MMSYN1_0227 195 tpaitpaiKVVEPSAPLSWDEVPMNGVRKATVKAMTKSHTEIAAFTGMKNTDITETHKMRTELKDHAAAsGIKLTYLAFIIKAVAKSLRDMPNINVrg 292
88888888888999999**********************************************98765548************************843 PP
TIGR01349 286 swtddvirkyknvDisvAvaipaGlitPivrnaeakgleeisnevkelakkArenkLkpeefqgGtftisnlGmlgikqFaaiinpPqaailavgase 383
+ ++ i+ +n++i++Av +p+Gl+ P+++ a+ ++ ei+ ++ ela+kA+++kL+ e tft+sn+G +g++ + iin+P++ail+vg+
MMSYN1_0227 293 DFANNKIQFMHNINIGIAVDTPNGLMVPVIKGADHLSVFEIAIKISELANKAKDGKLTRAEMTEATFTVSNFGSVGLDYATPIINSPESAILGVGTMS 390
599*********************************************************************************************** PP
TIGR01349 384 dkavvknkeekglevasilsvtlsvDHRviDGavgAeflkelkkllenPiell 436
++++ n e l+ i+ + +++DHR+iDGa + +fl +++++l +P+ l+
MMSYN1_0227 391 QTPLYINGE---LQKRFIMPLSMTCDHRIIDGADAGRFLIKVQDYLSKPVLLF 440
*********...999**********************************9886 PP
>> TIGR02712 urea_carbox: urea carboxylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.0 1.0 3.6e-10 1.1e-07 1140 1200 .. 15 75 .. 8 76 .. 0.95
Alignments for each domain:
== domain 1 score: 28.0 bits; conditional E-value: 3.6e-10
TIGR02712 1140 agrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvl 1200
+g++ +vlv+vgd v++g++l ve+ k++ ++ apvaGk++ i++k+G++++ Gd+++ +
MMSYN1_0227 15 EGTVAEVLVKVGDVVKEGQSLYFVETDKVNSEIPAPVAGKIAVINIKAGQEIKVGDVVMEI 75
688999***************************************************9876 PP
>> TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.0 0.1 2.9e-05 0.0088 34 64 .. 15 45 .. 12 48 .. 0.91
2 ! 19.1 1.0 4.2e-07 0.00012 28 83 .. 46 100 .. 43 142 .. 0.74
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 2.9e-05
TIGR01730 34 aGkvtkisvkeGqkVkkGqlLakldddelql 64
+G v++++vk G+ Vk+Gq L+ +++d+++
MMSYN1_0227 15 EGTVAEVLVKVGDVVKEGQSLYFVETDKVNS 45
79**********************9999875 PP
== domain 2 score: 19.1 bits; conditional E-value: 4.2e-07
TIGR01730 28 eiaaevaGkvtkisvkeGqkVkkGqlLakldddelqlaldaakaqlaaaeaqlela 83
ei a vaGk++ i++k+Gq++k G++ +++d+ + + ++ a+ ea++e
MMSYN1_0227 46 EIPAPVAGKIAVINIKAGQEIKVGDVVMEIDEGSGASV-ASEPKAEAKQEAKVEVV 100
78899**************************9887664.33333333344444333 PP
>> TIGR01235 pyruv_carbox: pyruvate carboxylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.7 1.9 3.8e-10 1.1e-07 1082 1142 .. 15 75 .. 4 76 .. 0.93
Alignments for each domain:
== domain 1 score: 27.7 bits; conditional E-value: 3.8e-10
TIGR01235 1082 pGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllvl 1142
G+v ev+vk+G+ v++G+ l +e+ k++ + ap +G+++ +++k+G++i+ d+++++
MMSYN1_0227 15 EGTVAEVLVKVGDVVKEGQSLYFVETDKVNSEIPAPVAGKIAVINIKAGQEIKVGDVVMEI 75
59*******************************************************9987 PP
>> TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.8 1.5 3.4e-10 1e-07 525 581 .. 15 71 .. 5 72 .. 0.94
2 ? -2.8 0.2 1.2 3.7e+02 509 509 .. 130 130 .. 77 202 .. 0.54
Alignments for each domain:
== domain 1 score: 28.8 bits; conditional E-value: 3.4e-10
TIGR01108 525 aGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavgev 581
G++ +v v+ Gd vkeG+ l +e+ k+++ei a++aG ++ i +k+G++++vg+v
MMSYN1_0227 15 EGTVAEVLVKVGDVVKEGQSLYFVETDKVNSEIPAPVAGKIAVINIKAGQEIKVGDV 71
599****************************************************98 PP
== domain 2 score: -2.8 bits; conditional E-value: 1.2
TIGR01108 509 t 509
t
MMSYN1_0227 130 T 130
1 PP
>> TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.3 3.6 1.2e-07 3.5e-05 98 155 .. 19 76 .. 15 77 .. 0.94
2 ? -1.7 0.5 2.9 8.7e+02 26 56 .. 95 125 .. 80 152 .. 0.52
3 ? 1.2 1.7 0.35 1.1e+02 47 69 .. 176 199 .. 160 233 .. 0.51
Alignments for each domain:
== domain 1 score: 22.3 bits; conditional E-value: 1.2e-07
TIGR00531 98 akpfvevGdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLivie 155
a+ v+vGd vk+g+ + ve k+ ei a vagk+ i ++ gq + g+ ++ i+
MMSYN1_0227 19 AEVLVKVGDVVKEGQSLYFVETDKVNSEIPAPVAGKIAVINIKAGQEIKVGDVVMEID 76
6778*********************************************999998875 PP
== domain 2 score: -1.7 bits; conditional E-value: 2.9
TIGR00531 26 eevevklkkeaaaakksvlqqaaapvvaqvp 56
+vev+ + ++ +++++v + + ++a ++
MMSYN1_0227 95 AKVEVVEENASVVGATPVSNDLIVRKQASTV 125
3334444444444444444444444444444 PP
== domain 3 score: 1.2 bits; conditional E-value: 0.35
TIGR00531 47 aaapvvaqvp.avasaavpaaava 69
a p++ ++ a ++a +p++a++
MMSYN1_0227 176 ASQPAPTPTLvASQPAPAPTPAIT 199
333333333222222222222222 PP
>> TIGR03077 not_gcvH: glycine cleavage protein H-like protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.0 0.6 3.7e-06 0.0011 37 82 .. 22 67 .. 11 88 .. 0.87
Alignments for each domain:
== domain 1 score: 17.0 bits; conditional E-value: 3.7e-06
TIGR03077 37 lpsvgslikegevlvilessksaievlspvsgevievnlalkddiq 82
l vg ++keg+ l +e+ k e+ +pv+g++ +n++ ++i+
MMSYN1_0227 22 LVKVGDVVKEGQSLYFVETDKVNSEIPAPVAGKIAVINIKAGQEIK 67
5689**********************************98877765 PP
>> TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.1 0.2 5.4e-05 0.016 49 83 .. 13 47 .. 11 52 .. 0.91
2 ! 5.6 1.0 0.0053 1.6 52 90 .. 53 91 .. 46 134 .. 0.72
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 5.4e-05
TIGR01843 49 legGivreIlVreGdrVkaGqvLveLdatsveada 83
l+ G+v+e+lV+ Gd Vk+Gq L ++ +v++++
MMSYN1_0227 13 LTEGTVAEVLVKVGDVVKEGQSLYFVETDKVNSEI 47
789********************999998888876 PP
== domain 2 score: 5.6 bits; conditional E-value: 0.0053
TIGR01843 52 GivreIlVreGdrVkaGqvLveLdatsveadaaelesqv 90
G ++ I ++ G+++k G+v +e+d+ s + a+e ++++
MMSYN1_0227 53 GKIAVINIKAGQEIKVGDVVMEIDEGSGASVASEPKAEA 91
78999*******************977666555544443 PP
>> TIGR00998 8a0101: efflux pump membrane protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.9 0.1 0.016 4.9 51 71 .. 16 36 .. 7 50 .. 0.65
2 ! 13.9 1.2 1.5e-05 0.0045 38 91 .. 38 95 .. 36 143 .. 0.73
Alignments for each domain:
== domain 1 score: 3.9 bits; conditional E-value: 0.016
TIGR00998 51 GkvievlkddtdaVkqGdvLv 71
G v+evl++ +d Vk+G+ L
MMSYN1_0227 16 GTVAEVLVKVGDVVKEGQSLY 36
667777777777777776653 PP
== domain 2 score: 13.9 bits; conditional E-value: 1.5e-05
TIGR00998 38 vkadel..svlsqvsGkvievlkddtdaVkqGdvLvklDptd.aelale.kaeaklaa 91
v++d++ ++ + v+Gk++ ++ + ++ +k Gdv +++D+ a +a e kaeak a
MMSYN1_0227 38 VETDKVnsEIPAPVAGKIAVINIKAGQEIKVGDVVMEIDEGSgASVASEpKAEAKQEA 95
5555541145669**************************9652333322255555444 PP
>> TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.3 0.1 0.00074 0.22 261 288 .. 15 42 .. 11 48 .. 0.62
2 ! 8.3 0.7 0.00073 0.22 60 93 .. 46 79 .. 37 122 .. 0.80
Alignments for each domain:
== domain 1 score: 8.3 bits; conditional E-value: 0.00074
TIGR03794 261 dGrvlevsltkGdlVeagaslasleved 288
+G+v ev ++ Gd+V++g sl +e +
MMSYN1_0227 15 EGTVAEVLVKVGDVVKEGQSLYFVETDK 42
5666666666666666666666666554 PP
== domain 2 score: 8.3 bits; conditional E-value: 0.00073
TIGR03794 60 tiqskgsGqvidlkvkvGdqvkkgdvvarieqpe 93
+i ++ +G++ +++k G+ +k gdvv i++ +
MMSYN1_0227 46 EIPAPVAGKIAVINIKAGQEIKVGDVVMEIDEGS 79
6788999999999999999999999999998755 PP
>> TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.3 1.4 3.5e-05 0.011 40 126 .. 16 101 .. 13 111 .. 0.72
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 3.5e-05
TIGR01945 40 Gapaepivkvgdkvlkgqliaka.eglvsapvHapvsGtvvaieeivaphasglpveaivieadg.eekwielealkkeeklskeeile 126
G+ ae +vkvgd v+ gq + + v++++ apv+G++ i+ + + +v +v+e d+ + + +e++ + ++ +k e++e
MMSYN1_0227 16 GTVAEVLVKVGDVVKEGQSLYFVeTDKVNSEIPAPVAGKIAVINIKAGQ---EIKVGDVVMEIDEgSGASVASEPKAEAKQEAKVEVVE 101
78899*************99765156799***********998876664...4555666666665455555566666666666656555 PP
>> TIGR00527 gcvH: glycine cleavage system H protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 0.3 2.3e-05 0.007 43 80 .. 22 59 .. 11 64 .. 0.91
2 ? 0.2 0.7 0.56 1.7e+02 47 108 .. 63 125 .. 60 134 .. 0.76
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 2.3e-05
TIGR00527 43 lPevGaevsaeeslgsvesvkaaselyaPvdGtvvevn 80
l vG+ v+ ++sl ve+ k se+ aPv G++ +n
MMSYN1_0227 22 LVKVGDVVKEGQSLYFVETDKVNSEIPAPVAGKIAVIN 59
6689******************************9998 PP
== domain 2 score: 0.2 bits; conditional E-value: 0.56
TIGR00527 47 GaevsaeeslgsvesvkaaselyaP.vdGtvvevnealedsPelvnedPygegWlikvklsdv 108
G+e++ ++ + ++ as +P ++ + +++ e +e++ +v P+++ +++ ++s v
MMSYN1_0227 63 GQEIKVGDVVMEIDEGSGASVASEPkAEAKQEAKVEVVEENASVVGATPVSNDLIVRKQASTV 125
788888888888888888888877734455666778899999999999999999998887765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (441 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 185 (0.041221); expected 89.8 (0.02)
Passed bias filter: 87 (0.019385); expected 89.8 (0.02)
Passed Vit filter: 23 (0.00512478); expected 4.5 (0.001)
Passed Fwd filter: 15 (0.00334225); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 15 [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.24
# Mc/sec: 2638.73
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0227 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0228 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0228.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0228/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0228 [L=629]
Description: lipoamide_DH: dihydrolipoyl dehydrogenase 5=Equivalog Metabolic process
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.8e-175 580.1 17.1 6.8e-175 580.1 17.1 1.5 2 TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
3.4e-87 291.3 9.7 4.7e-87 290.9 9.7 1.1 1 TIGR02053 MerA: mercury(II) reductase
2.4e-75 252.4 10.5 3.3e-75 252.0 10.5 1.1 1 TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
4.7e-71 237.6 8.1 6.5e-71 237.2 8.1 1.1 1 TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
1.8e-65 219.5 6.2 2.8e-65 218.9 6.2 1.3 1 TIGR03452 mycothione_red: mycothione reductase
3.2e-47 159.4 9.6 4.5e-47 158.9 9.6 1.1 1 TIGR01438 TGR: thioredoxin and glutathione reductase
6.1e-40 135.1 8.0 9.2e-40 134.5 8.0 1.2 1 TIGR01423 trypano_reduc: trypanothione-disulfide reductase
3.5e-24 83.3 12.4 3.5e-24 83.3 12.4 1.6 1 TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
5.9e-20 69.2 5.0 1.1e-15 55.2 1.8 2.4 2 TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
3.2e-19 66.9 10.9 5e-19 66.2 10.9 1.3 1 TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyl
4.4e-17 60.0 12.3 7.1e-17 59.3 12.3 1.2 1 TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 comp
1.1e-16 58.4 5.5 1.2e-16 58.3 2.8 2.3 2 TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large
1.5e-15 54.8 7.2 2.9e-14 50.6 7.1 2.4 1 TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidored
4e-15 53.3 3.8 1.2e-10 38.6 0.8 2.2 2 TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reducta
4.4e-14 49.9 6.7 8.1e-10 35.8 3.7 2.3 2 TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F
7.8e-14 49.6 5.9 7.8e-14 49.6 5.9 2.0 2 TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransfer
2.5e-08 31.1 8.8 5.1e-06 23.5 0.8 3.6 3 TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
5.4e-08 28.7 1.0 8.8e-08 28.0 1.0 1.3 1 TIGR01235 pyruv_carbox: pyruvate carboxylase
8.8e-08 29.8 1.7 1.4e-06 25.9 0.1 2.6 2 TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxido
1.5e-07 27.5 0.5 2.2e-07 26.9 0.5 1.2 1 TIGR02712 urea_carbox: urea carboxylase
3.3e-07 28.3 4.3 6.4e-07 27.3 0.1 2.9 3 TIGR02032 GG-red-SF: geranylgeranyl reductase family
8e-07 25.8 0.8 1.6e-06 24.8 0.8 1.5 1 TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
2e-06 24.9 6.5 0.002 15.1 0.1 2.8 3 TIGR01730 RND_mfp: efflux transporter, RND family, MFP subun
2e-06 25.1 4.3 4e-06 24.2 4.3 1.5 1 TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dih
2.9e-05 21.3 4.0 0.0088 13.1 0.2 3.0 4 TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03
8.1e-05 19.1 1.3 0.015 11.6 0.2 2.6 2 TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE famil
0.00012 19.1 2.6 0.0056 13.6 0.1 2.2 2 TIGR01843 type_I_hlyD: type I secretion membrane fusion prot
0.00015 18.6 3.1 0.012 12.4 0.2 2.7 2 TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
0.00022 19.7 1.9 0.00022 19.7 1.9 2.2 1 TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carr
0.00032 17.7 1.6 0.0057 13.6 0.2 2.5 2 TIGR00998 8a0101: efflux pump membrane protein
0.00039 18.4 0.4 0.0011 16.9 0.4 1.8 1 TIGR03077 not_gcvH: glycine cleavage protein H-like protein
0.00044 17.2 2.2 0.12 9.2 0.4 2.5 2 TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion
0.00057 16.9 0.4 0.00057 16.9 0.4 1.9 2 TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
0.00089 16.1 0.4 0.00089 16.1 0.4 2.0 3 TIGR02730 carot_isom: carotene isomerase
0.0016 15.4 0.7 0.0016 15.4 0.7 2.2 2 TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenas
0.0028 14.3 6.6 0.059 10.0 1.6 2.3 2 TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
0.0031 14.7 0.4 0.0031 14.7 0.4 2.1 2 TIGR00292 TIGR00292: thiazole biosynthesis enzyme
0.0045 13.5 0.0 0.011 12.2 0.0 1.6 2 TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE famil
0.0065 14.5 0.3 0.021 12.8 0.3 1.9 1 TIGR00527 gcvH: glycine cleavage system H protein
0.0067 13.1 6.0 0.017 11.8 0.5 2.2 2 TIGR02734 crtI_fam: phytoene desaturase
0.0079 13.0 12.4 0.27 7.9 0.7 3.9 4 TIGR00275 TIGR00275: flavoprotein, HI0933 family
------ inclusion threshold ------
0.015 12.1 0.0 0.021 11.5 0.0 1.2 1 TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreduct
0.033 11.0 3.2 0.87 6.3 0.3 2.5 2 TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, U
0.043 10.8 6.6 0.56 7.2 0.7 2.6 2 TIGR02352 thiamin_ThiO: glycine oxidase ThiO
0.1 9.2 5.6 0.15 8.7 0.0 3.3 4 TIGR00551 nadB: L-aspartate oxidase
0.12 9.6 2.6 1 6.5 0.1 2.6 3 TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
0.27 8.3 2.9 0.26 8.3 0.2 2.0 2 TIGR01790 carotene-cycl: lycopene cyclase family protein
0.5 7.1 6.9 0.59 6.8 0.2 2.9 3 TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
0.82 6.3 14.0 0.026 11.2 1.1 3.5 4 TIGR01813 flavo_cyto_c: flavocytochrome c
2.1 5.2 5.9 1.3 6.0 0.6 2.4 2 TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiour
Domain annotation for each model (and alignments):
>> TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.1 0.1 3.1 2.8e+02 84 119 .. 68 103 .. 52 125 .. 0.78
2 ! 580.1 17.1 7.6e-177 6.8e-175 2 460 .. 164 628 .. 163 629 .] 0.97
Alignments for each domain:
== domain 1 score: -2.1 bits; conditional E-value: 3.1
TIGR01350 84 kekvvkklvgGvkaLlkknkvevikGeaklldkkev 119
vv ++ +G + ++ kvev++ +a++++++ v
MMSYN1_0228 68 VGDVVIEIDDGTSSSTTEPKVEVVEENASVVGATPV 103
357888999999999999999999999999887766 PP
== domain 2 score: 580.1 bits; conditional E-value: 7.6e-177
TIGR01350 2 ydvvviGgGpgGYvaAiraaqlglkvalvekeklGGtClnvGCiPtKalLksaevveelke.akelgieven...vkldlekllerkekvvkklvgGv 95
+dv+v+G+G+gGYv+Ai++aqlglk++++eke++GG+ClnvGCiPtK+lLk+++v++++ + akelgi ++n v +d++++l+rk+ vvkkl+gGv
MMSYN1_0228 164 FDVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEYYGGVCLNVGCIPTKTLLKTSHVYHDIMHkAKELGIVLQNtekVVIDWAQVLQRKNGVVKKLTGGV 261
8*******************************************************************9877788*********************** PP
TIGR01350 96 kaLlkknkvevikGeaklldkkevevkkekkekkleakniiiAtGseprelplk.leedek..vvitseealelkevpeslvivGgGviGvEfasifa 190
k+Ll+knkv++ikGea ldk++++v+++++ +++n+iiA+Gs+p++lpl+ +++ +k ++i+s+ +l+++++pe+lv++GgGviG+Ef+++fa
MMSYN1_0228 262 KYLLDKNKVTQIKGEAVALDKNTISVNNKNY----RVNNLIIASGSTPNHLPLPgFDQGRKdgIIIDSTRILSVPKIPETLVVIGGGVIGIEFSCLFA 355
*****************************95....6*******************99988888*********************************** PP
TIGR01350 191 klGvkvtvielldrilpaldaevskvlkkklkkkg.vkiltnakvtevekeedevvveakkkevetleaekvLvavGrkpnleelgleklgvelderg 287
+lG+kvtv++ l++il++ld+++ ++++k+lk++ ++++tna+v+ e ++ +vv+e+++k+ +++++e+vL +vGrk++++ g+e++g+el+ r+
MMSYN1_0228 356 SLGTKVTVLQGLPTILEMLDKDIIDAMTKELKNRYnIEVITNASVK--EFKNGSVVYEIDGKD-QMIKGEYVLESVGRKTSIT--GFENIGLELTPRK 448
********************************9877**********..89999*****99995.9******************..************* PP
TIGR01350 288 aikvdeelrtnvpgiyaiGDvigklmLAhvAskegvvaaekiagkeks......eidykavPsviytePevasvGlteeqakeegievkvgkfpfaan 379
ai+v+e+ +tn++g+yaiGDv+gk+mLAh+A+k ++vaa++ia+k+++ +dy+ +Ps+iyt+Pev+++G+te+q+k+e+ie+k+ kfpf+a+
MMSYN1_0228 449 AIVVNEYQETNLDGVYAIGDVVGKVMLAHTAVKGAIVAANRIAKKANKdhaediVMDYDRIPSCIYTHPEVSMIGKTEQQLKQENIEYKTFKFPFSAI 546
*******************************************998888999999******************************************* PP
TIGR01350 380 gkalaleetdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaikeaalaal.gkaih 460
gkala ++t+ fvk+i+++k+++ilGahi+g++a+e+ise+a+++e+e+t++e+a+tihpHPt+sEai eaa+a+ gkaih
MMSYN1_0228 547 GKALADDDTSEFVKIIIEPKYKTILGAHIIGNRATEMISEIAAVIECEGTITEIANTIHPHPTMSEAIGEAAEALEtGKAIH 628
************************************************************************9975156777 PP
>> TIGR02053 MerA: mercury(II) reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 290.9 9.7 5.2e-89 4.7e-87 1 453 [. 164 621 .. 164 625 .. 0.92
Alignments for each domain:
== domain 1 score: 290.9 bits; conditional E-value: 5.2e-89
TIGR02053 1 ydlviiGsGaaafaaaikaaelgakvvlverGilGGtCvnvGCvPSKallraaevaklakkas.....vgllaaevevdleelleqkkevveelRk.e 92
+d+ ++G G ++ +aik a+lg k +++e+ GG C nvGC+P K+ll++++v++ + ++ v +++v +d +++l++k+ vv++l
MMSYN1_0228 164 FDVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEYYGGVCLNVGCIPTKTLLKTSHVYHDIMHKAkelgiVLQNTEKVVIDWAQVLQRKNGVVKKLTGgV 261
589****************************************************99765544354433445678899***************97524 PP
TIGR02053 93 KYedvlesydavdllegkakfkdektvkvdlgkevvgakrvliAtGarpavPeipGLkeae....yltseelleldkipeslvviGggaiavElaqlf 186
KY +l++ + v ++g+a+ d++t++v+ +k+ + ++ ++iA G+ p+ ++pG ++ +++s+++l+ kipe lvviGgg+i++E++ lf
MMSYN1_0228 262 KY--LLDKNK-VTQIKGEAVALDKNTISVN-NKNYRVNN-LIIASGSTPNHLPLPGFDQGRkdgiIIDSTRILSVPKIPETLVVIGGGVIGIEFSCLF 354
66..899996.*******************.78888888.*****************99888999********************************* PP
TIGR02053 187 arlGsevtllqrserllkeeepeisaaveellae.eGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLnLekvgvkld 283
a lG +vt+lq ++l+ +++i a+++ l++ +ev+++a+vk+ +++ v +e +++++ ++ +++l GRk + + e++g +l
MMSYN1_0228 355 ASLGTKVTVLQGLPTILEMLDKDIIDAMTKELKNrYNIEVITNASVKEFKNG-----SVVYEIDGKDQMIKGEYVLESVGRKTSIT--GFENIGLELT 445
******************************9999789*******99999885.....467899999*******************9..99******** PP
TIGR02053 284 erGeilvdeklrtsnpkiyAAGDvikglqlesvAakeGvvaAenalggaeak......ldlevlPkvvFtdPevAsvGlteeelakagievesrtvkl 375
r i+v+e+ +t+ ++yA GDv+++++l + A k vaA+ + ++a+++ +d++ +P+ ++t+Pev +G te++l+++ ie+++ +
MMSYN1_0228 446 PRKAIVVNEYQETNLDGVYAIGDVVGKVMLAHTAVKGAIVAANRIAKKANKDhaedivMDYDRIPSCIYTHPEVSMIGKTEQQLKQENIEYKTFKFPF 543
*******************************9998766666666666565433334449*************************************** PP
TIGR02053 376 eavpralinretrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEglklAAlaF 453
+a+ +al+ +t ++K+++e++ k +lg+++++++A e+i+e a++i+ t+ ++++t+h+++tm+E++ AA a
MMSYN1_0228 544 SAIGKALADDDTSEFVKIIIEPKYKTILGAHIIGNRATEMISEIAAVIECEGTITEIANTIHPHPTMSEAIGEAAEAL 621
**************************************************************************9886 PP
>> TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 252.0 10.5 3.6e-77 3.3e-75 2 445 .. 163 613 .. 162 616 .. 0.89
Alignments for each domain:
== domain 1 score: 252.0 bits; conditional E-value: 3.6e-77
TIGR01421 2 eydylviGGGsGGiasarraaeyGakallveekklGGtcvnvGcvPkkvmwyaasl.aelledaadyGfkse..kenkfnfkelkekrdayvdrlngi 96
++d+ v+G G GG +a ++a++G k+l++e++ GG c+nvGc+P k + +++++ +++++a++ G+ + ++ +++++ ++++ v++l g
MMSYN1_0228 163 TFDVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEYYGGVCLNVGCIPTKTLLKTSHVyHDIMHKAKELGIVLQntEKVVIDWAQVLQRKNGVVKKLTGG 260
69************************************************999986267899******86552144589******************* PP
TIGR01421 97 yqknlekekvelieGyaeftkdetvevngkeytakhiliatGgkpsipeniPGaelg......ldsdgffaleelPkrvvivGaGyiavelaGvlhgl 188
+ l+k+kv i+G a +++t++vn+k+y+ + ++ia+G++p+ + +PG++ g +ds ++ + ++P+ v++G G i++e++ ++ +l
MMSYN1_0228 261 VKYLLDKNKVTQIKGEAVALDKNTISVNNKNYRVNNLIIASGSTPNHL-PLPGFDQGrkdgiiIDSTRILSVPKIPETLVVIGGGVIGIEFSCLFASL 357
**********************************************99.9***998744444468999****************************** PP
TIGR01421 189 Gsktdlvirrervlrsfdelisekvveelek.aglevhklskvvkvektvegklvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyi 285
G+k ++ ++l +d+ i + +++el++ ++ev +++ v++ + g +v ++ ++ + + ++ ++Grk + g e++g++l + i
MMSYN1_0228 358 GTKVTVLQGLPTILEMLDKDIIDAMTKELKNrYNIEVITNASVKEFKN---GSVVYEIDGKDQMIKGEYVLESVGRKTS--ITGFENIGLELTPRKAI 450
****************************975279******99988764...4556666666678999**********55..56789************ PP
TIGR01421 286 kvdeyqntnvegiyalGdvvGkveltPvaiaaGrklserlfegk.....edakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftam 378
v+eyq+tn +g+ya+GdvvGkv l+ a++ ++r+ ++ ed +dy+ +P+ +++hPe++ +G te++ ++ + + k++k f+a+
MMSYN1_0228 451 VVNEYQETNLDGVYAIGDVVGKVMLAHTAVKGAIVAANRIAKKAnkdhaEDIVMDYDRIPSCIYTHPEVSMIGKTEQQLKQE--NIEYKTFKFPFSAI 546
*************************8877665555555554332222358889***********************985443..34569********* PP
TIGR01421 379 yyaltkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtssee 445
al+ + + +k++ k + ++G hiiG + e++ a i t ++ nt+ hPt se
MMSYN1_0228 547 GKALADDDTSEFVKIIIEPKYKTILGAHIIGNRATEMISEIAAVIECEGTITEIANTIHPHPTMSEA 613
*****************************************************************96 PP
>> TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 237.2 8.1 7.2e-73 6.5e-71 3 441 .. 164 613 .. 162 616 .. 0.90
Alignments for each domain:
== domain 1 score: 237.2 bits; conditional E-value: 7.2e-73
TIGR01424 3 ydlfviGaGsGGvraarlaaalGakvaiaeedlvGGtcvirGcvPkkllvyase.faeeledakgyGwe...vekaefdwkkllakkdkeiarlsgly 96
+d+ v+GaG GG +a +a+lG k i e++++GG c+ Gc+P k l+ +s+ + + +++ak+ G ek+ +dw+++l++k+ +++l g
MMSYN1_0228 164 FDVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEYYGGVCLNVGCIPTKTLLKTSHvYHDIMHKAKELGIVlqnTEKVVIDWAQVLQRKNGVVKKLTGGV 261
9************************************************9999934567899*****7533478999********************* PP
TIGR01424 97 kkllakagvellegraelvdantvevledgktytaekiliavGgrpvkpelPGaela......itsdeafdletlPksilvvGgGyiavefagifrGl 188
k ll+k v ++g+a d+nt+ v++ k+y ++++ia G+ p + lPG + + i s +++++++P++++v+GgG i++ef+ +f+ l
MMSYN1_0228 262 KYLLDKNKVTQIKGEAVALDKNTISVNN--KNYRVNNLIIASGSTPNHLPLPGFDQGrkdgiiIDSTRILSVPKIPETLVVIGGGVIGIEFSCLFASL 357
**************************99..9**********************88644444448999******************************* PP
TIGR01424 189 Gvkvtllyrgekilrgfdddvraelaeeleer.GirillktvlksiekvddGlkvtls..kdeeivadvvllatGrvPnvkglgleaaGvelndagai 283
G+kvt l +il+ +d+d+ +++el++r i++++++++k+ ++G +v kd+ i + vl ++Gr+ + g+e++G+el + ai
MMSYN1_0228 358 GTKVTVLQGLPTILEMLDKDIIDAMTKELKNRyNIEVITNASVKEF---KNGSVVYEIdgKDQMIKGEYVLESVGRKTSIT--GFENIGLELTPRKAI 450
******************************9856999998877665...56644443323889999**********97776..68************* PP
TIGR01424 284 avdeysrtsvpsiyavGdvtdrinltPvaikeaaafaet....efknnptk..adhdlvatavfsqPevatvGlseeearekftddievyraefrPmk 375
+v+ey +t+ +++ya+Gdv ++ l+ a+k a + a+ + k++ + +d+d + + ++++Pev+++G +e++ +++ + ++++ +f +
MMSYN1_0228 451 VVNEYQETNLDGVYAIGDVVGKVMLAHTAVKGAIVAANRiakkANKDHAEDivMDYDRIPSCIYTHPEVSMIGKTEQQLKQEN-IEYKTFKFPFSAIG 547
*************************999999887776641100333322223379**********************999888.899*********** PP
TIGR01424 376 atlsGrqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaee 441
++l+ ++k++++ k + +lGah++G+ a+e+i +a + + t ++ +t+ hP+ +e
MMSYN1_0228 548 KALADDDTSEFVKIIIEPKYKTILGAHIIGNRATEMISEIAAVIECEGTITEIANTIHPHPTMSEA 613
**************************************************************9985 PP
>> TIGR03452 mycothione_red: mycothione reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 218.9 6.2 3.1e-67 2.8e-65 2 448 .. 163 617 .. 162 621 .. 0.85
Alignments for each domain:
== domain 1 score: 218.9 bits; conditional E-value: 3.1e-67
TIGR03452 2 hydliiiGtGsGnsilderfed..kriaivekGtfGGtclnvGciptkmfvyaaevakevke.sarlgid.aeids..vrwpdivsrvfedridpiaa 93
++d+ ++G+G G ++ + ++ + i+ek +GG clnvGciptk + +++v +++ + ++ lgi + ++ ++w ++ +r + + +
MMSYN1_0228 163 TFDVCVVGAGIGGYVTAIKSAQlgLKTLIIEKEYYGGVCLNVGCIPTKTLLKTSHVYHDIMHkAKELGIVlQNTEKvvIDWAQVLQRKNG--VVKKLT 258
79*********98776655544115778*****************************99875166799852334442269*******988..777889 PP
TIGR03452 94 sGeeyrrgdktpnidvyesharfvgrktlrtedgeeitadqvviaaGsrpv.ipeaiaesgvr...yytnedimrlpelpeslvivGgGyialefahv 187
+G +y + ++ + +a +++t+++++ +++ ++++ia+Gs p +p + g + + i+ +p++pe+lv++GgG+i +ef+ +
MMSYN1_0228 259 GGVKYLLDK--NKVTQIKGEAVALDKNTISVNN-KNYRVNNLIIASGSTPNhLPLPGFDQGRKdgiIIDSTRILSVPKIPETLVVIGGGVIGIEFSCL 353
9****9887..789999*************986.578999********996244333444443121456788************************** PP
TIGR03452 188 fsalGtkvtlvarsekllrkldediserftelakkkfdvrlgrnvtaaeqdddgvtlelddG.stveadvllvatGrvpngdlldaeaaGvevdedgr 284
f +lGtkvt+++ ++l ld+di + +t+ k+++++ +n + e ++ v+ e+d + ++++ +l ++Gr + e+ G+e++ +
MMSYN1_0228 354 FASLGTKVTVLQGLPTILEMLDKDIIDAMTKELKNRYNIEVITNASVKEFKNGSVVYEIDGKdQMIKGEYVLESVGRKTS--ITGFENIGLELTPRKA 449
*****************************************9998877777777999998641679***********865..678899********** PP
TIGR03452 285 vkvdeyqrtsaegvfalGdvsspyqlkhvanaearvvkhnllkd.....edlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqdygdva 377
+ v+eyq t +gv+a+Gdv + +l h a + a v ++ ++k+ ++ ++d+d +p++++t+p ++++G teq+ +++ i k ++ a
MMSYN1_0228 450 IVVNEYQETNLDGVYAIGDVVGKVMLAHTAVKGAIVAANRIAKKankdhAEDIVMDYDRIPSCIYTHPEVSMIGKTEQQLKQEN--IEYKTFKFPFSA 545
*******************************999888888887776666555689************************99875..555666665556 PP
TIGR03452 378 yGwam..edteglakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpevvena 448
G a+ +dt++++k+i + + +lGahiiG++a+ +i ++ ++ + ++ e+a+ hp+++e + +a
MMSYN1_0228 546 IGKALadDDTSEFVKIIIEPKYKTILGAHIIGNRATEMISEIAAVIECEGTITEIANT-IHPHPTMSEAIGEA 617
555542278899*******************************************986.679******99776 PP
>> TIGR01438 TGR: thioredoxin and glutathione reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 158.9 9.6 5e-49 4.5e-47 2 465 .. 163 614 .. 162 627 .. 0.84
Alignments for each domain:
== domain 1 score: 158.9 bits; conditional E-value: 5e-49
TIGR01438 2 dydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaallGk.alkdskkyGwnveeq..vkhdweklskavq 96
+d+ v+G+G GG +a ++a+lg k l+++ GG c nvGcip k + +++++ + +++++k+ G +++ v dw ++ + +
MMSYN1_0228 163 TFDVCVVGAGIGGYVTAIKSAQLGLKTLIIEK---------EYYGGVCLNVGCIPTKTLLKTSHVYHdIMHKAKELGIVLQNTekVVIDWAQVLQRKN 251
59**************************9973.........4579**********99888888776516679*****98888766999********** PP
TIGR01438 97 drikslnfsyrvalrekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlrpkypddieG....ake.lsitsddlfslkkvpGktlvvGa 189
+k l + + l ++kv+ i + a dk++i+ +k+ + ++++ia+G p+ + ++G k+ + i s ++s++k+p +v+G+
MMSYN1_0228 252 GVVKKLTGGVKYLLDKNKVTQIKGEAVALDKNTISVNNKN-----YRVNNLIIASGSTPNHLP-LPGfdqgRKDgIIIDSTRILSVPKIPETLVVIGG 343
***********************************98876.....557899********9873.66522224543678999**********9999*** PP
TIGR01438 190 syvalecaGflaalgldvtvlvr.sillrGfdqdcavkvkeylkeq.GvkfkeqvlpkkvekveakvlvkftdkdntieeeydtvlyaiGrkadlkkl 285
+ + +e + ++a+lg +vtvl +l +d+d++ +++ lk++ + ++ + +k ++ v+ + kd+ i++ey vl ++Grk+++
MMSYN1_0228 344 GVIGIEFSCLFASLGTKVTVLQGlPTILEMLDKDIIDAMTKELKNRyNIEVITNASVKEFKN--GSVVYEIDGKDQMIKGEY--VLESVGRKTSIT-- 435
********************97526789**********999998862566666665555443..3567778889999***99..9*******9997.. PP
TIGR01438 286 nlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdske......ivdyenvpttvftpleygavGlseekave 377
++en+g+++ ++ i+++e+++tn++++ya+Gd+v k l+ a+k + a+r+ k++++ ++dy+ +p++++t e + +G +e++
MMSYN1_0228 436 GFENIGLELTPRK-AIVVNEYQETNLDGVYAIGDVVG-KVMLAHTAVKGAIVAANRIAKKANKdhaediVMDYDRIPSCIYTHPEVSMIGKTEQQL-- 529
579*****99886.599******************96.567999999988888888887653322223379*******************999764.. PP
TIGR01438 378 kyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeef 465
+en+e +f + + +d++ ++k++ + + ++G h++G a+e++ +a+ + ++ + ++ nti hp+ +e
MMSYN1_0228 530 --KQENIEYKTFKFPFSAIGKALADDDTSEFVKIIIEPK-YKTILGAHIIGNRATEMISEIAAVIECEGTITEIANTIHPHPTMSEAI 614
..5678886555554444444555565678999998765.678******************************************976 PP
>> TIGR01423 trypano_reduc: trypanothione-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 134.5 8.0 1e-41 9.2e-40 3 467 .. 163 614 .. 161 620 .. 0.84
Alignments for each domain:
== domain 1 score: 134.5 bits; conditional E-value: 1e-41
TIGR01423 3 aydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkk.lmvtgaqymdtlresagfgweld.aesvkanwkaliaak 98
++d+ v+gag gg + ++a l k + + + k + gg c+nvgc+p k l+ t y d + ++ +g l+ +e v +w ++ k
MMSYN1_0228 163 TFDVCVVGAGIGGYVTAIKSAQLGLKTLII-E--K----EY---YGGVCLNVGCIPTKtLLKTSHVYHDIMHKAKELGIVLQnTEKVVIDWAQVLQRK 250
69999********99999999998886543.2..2....23...49**********7637778999************99962689************ PP
TIGR01423 99 nkavldindsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqmlkiegiel......cissneafyleeapkrv 190
n v ++ + + d + ++ +g dkn++ v + + + +++a+gs p++l ++g ++ i s + + + p+
MMSYN1_0228 251 NGVVKKLTGGVKYL-LDKNKVTQIKGEAVALDKNTISVNNK---------NYRVNNLIIASGSTPNHLPLPGFDQgrkdgiIIDSTRILSVPKIPETL 338
******99988765.57788888999888889999988653.........3456789**************9875333333689999999******** PP
TIGR01423 191 ltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkqlvan.gidvrtnenpakveknadgskhvvfe.sgke..ldvdvvmlai 284
+++ggg i +ef+ +f + g kv++ +il +d+++ + +tk+l+ i+v tn a v+ +gs vv+e gk+ + + v+ ++
MMSYN1_0228 339 VVIGGGVIGIEFSCLFA---SLGTKVTVLQGLPTILEMLDKDIIDAMTKELKNRyNIEVITN---ASVKEFKNGS--VVYEiDGKDqmIKGEYVLESV 428
***************97...579****************************85325666665...3466666776..566523443115668899999 PP
TIGR01423 285 grlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdrvmltpvainegaavvdtvf...askprk....tdhtkvasavfsippigvcg 375
gr +++ ++++g+el+ + ai v+ey +tn+d +yaigdv ++vml+ a++ ga v + a+k + d+ ++ s++++ p + + g
MMSYN1_0228 429 GR--KTSITGFENIGLELTPRKAIVVNEYQETNLDGVYAIGDVVGKVMLAHTAVK-GAIVAANRIakkANKDHAedivMDYDRIPSCIYTHPEVSMIG 523
99..6788899******************************************97.55555544402244544423334789**************** PP
TIGR01423 376 lveeeaakkyekvavyessftplmhnisgskykkfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeel 467
+e++ ++ + ++ f+ + + ++ fv ki+ + ++lg h++g+ + e+i +a ++ + i+++ nti hpt +e +
MMSYN1_0228 524 KTEQQLKQENIEYKTFKFPFSAIGKALADDDTSEFV-KIIIEPKYKTILGAHIIGNRATEMISEIAAVIECEGTITEIANTIHPHPTMSEAI 614
*****999999999***************9999995.89999999******************************************99875 PP
>> TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 83.3 12.4 3.9e-26 3.5e-24 64 419 .. 263 602 .. 232 608 .. 0.79
Alignments for each domain:
== domain 1 score: 83.3 bits; conditional E-value: 3.9e-26
TIGR03385 64 kfiekkkidvktksevikvdkeektvvvknnktnekyeesyDkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyig 161
++ +k+k++ ++k e +++ +++t++v n ++y ++Li+++G p++l+++g d+ + d+++i ++ k e++vviGgG ig
MMSYN1_0228 263 YLLDKNKVT-QIKGEAVAL--DKNTISVNN----KNYR--VNNLIIASGSTPNHLPLPG--FDQGRKDGIIIDSTRILSVP--KIPETLVVIGGGVIG 347
444555443.344444444..556666654....4455..678****************..56666667788999998876..77899********** PP
TIGR03385 162 lemvealkergkevtliersekilnkllDeeiakiveeelekk.eielrlneevksvegeekvevltsg.kvyqaDlvilavGvkPnselikssqlkl 257
+e + + g +vt+++ +i ++lD++i + ++ el+++ +ie+ +n +vk+ ++ +v + + + ++ + v+++vG k + ++ +l+l
MMSYN1_0228 348 IEFSCLFASLGTKVTVLQGLPTI-LEMLDKDIIDAMTKELKNRyNIEVITNASVKEFKNGSVVYEIDGKdQMIKGEYVLESVGRKTSITGFENIGLEL 444
**********************9.89**************99869************9999998887661567999********************** PP
TIGR03385 258 gkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGk.diefkGvlGtsivk.....fldltiaktGltenelkkl 349
+ + ai+vne+ +t+ + +yaiGDv+ v lA +a k + ++a++ia k + + + + +++ +G te++lk++
MMSYN1_0228 445 TPRKAIVVNEYQETNLDGVYAIGDVVGK----------VMLAHTAVKGAIVAANRIAKKaNKDHAEDIVMDYDRipsciYTHPEVSMIGKTEQQLKQE 532
************************9853..........4466666666666666666554333333322222220000034568999*********** PP
TIGR03385 350 nidyktvevkakakanYYP.gakdlllklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkdlte 419
ni+ykt + a + +++ ++k+i+e + k ilga ++G+ + + i +aa+i+ + t+ ++++
MMSYN1_0228 533 NIEYKTFKFPFSAIGKALAdDDTSEFVKIIIEPKYKTILGAHIIGNR-ATEMISEIAAVIECEGTITEIAN 602
*******9988777665541566779*******************98.999***********999999865 PP
>> TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.8 0.1 2.5e-05 0.0022 2 37 .. 165 200 .. 164 242 .. 0.91
2 ! 55.2 1.8 1.2e-17 1.1e-15 90 297 .. 283 491 .. 252 493 .. 0.81
Alignments for each domain:
== domain 1 score: 14.8 bits; conditional E-value: 2.5e-05
TIGR01292 2 dviiiGaGpaGltaaiYaaranlktlliegkeaggq 37
dv ++GaG +G+ +ai +a+ +lktl+ie++ gg
MMSYN1_0228 165 DVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEYYGGV 200
899**************************9999985 PP
== domain 2 score: 55.2 bits; conditional E-value: 1.2e-17
TIGR01292 90 kvltedekeykakaviiAtGakarklgikgeeeflgrGvsyCavCDgalfk.nkevavvGggdsAveealyLskiakkVtlvhrrdkl......raek 180
++ ++k+y+ + +iiA+G+++ +l ++g ++ + G+ ++ ++ k +++v+Ggg +e + ++++++kVt+++ ++ +
MMSYN1_0228 283 NTISVNNKNYRVNNLIIASGSTPNHLPLPGFDQGRKDGIIIDSTRILSVPKiPETLVVIGGGVIGIEFSCLFASLGTKVTVLQGLPTIlemldkDIID 380
233335799******************************98888766666624589*************************98765431111113456 PP
TIGR01292 181 illerlkknekievllnstveeikGdekvesvkikntktkeeeelkvdgvFiaiGhepntellkel.leldeegyivvdeemrTsveGvfaaGDvrdk 277
+++++lk++ +iev++n+ v+e k + v +++ k ++ +k + v +G +++ +++ lel+ + ivv+e ++T+++Gv+a GDv
MMSYN1_0228 381 AMTKELKNRYNIEVITNASVKEFKNGSVVYEIDGK------DQMIKGEYVLESVGRKTSITGFENIgLELTPRKAIVVNEYQETNLDGVYAIGDVVG- 471
7999999999**************99999988655......666777788889***99999999999******************************. PP
TIGR01292 278 slrQvvtaagdGaiAalsve 297
+++ + ta+ ++Aa++++
MMSYN1_0228 472 KVMLAHTAVKGAIVAANRIA 491
67789999998899998876 PP
>> TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 66.2 10.9 5.6e-21 5e-19 3 151 .. 4 147 .. 2 181 .. 0.60
Alignments for each domain:
== domain 1 score: 66.2 bits; conditional E-value: 5.6e-21
TIGR01348 3 ikvPdiGd.ieevevievlvkvGdkveaeqslitlesdkasmevPsskaGivkeikvkvGdtlkeGavilllevadgaaddaeekaeaasaaagaada 99
+k diG+ + e++v evlvkvGd v+++q+l +e+dk e+Ps+ aG + i+++ G ++k+G+v+++++ ++ +++ +e+k e+ +a
MMSYN1_0228 4 VKFADIGEgLTEGTVAEVLVKVGDVVKEGQPLYFVETDKVNSEIPSPVAGKIAVINISTGQEIKVGDVVIEIDDGT-SSSTTEPKVEVVEENA----- 95
6778999988999999999999999999999999999999999999999999999999999999999999998874.4447777777665444..... PP
TIGR01348 100 akdveaeqalisveadkaaqevq.dafketvkageagaaadaakkeaaPaeaq 151
+ v a++ + v ++a + + + ++e+v+++ + a+ +++ P+ a+
MMSYN1_0228 96 -SVVGATPVSNDVLPSRAPKPKAeTKKTEQVEENASVVGATPVSNDVLPSRAP 147
.2222222222222222222221022223333333333333333333343333 PP
>> TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.3 12.3 7.9e-19 7.1e-17 129 293 .. 4 175 .. 2 182 .. 0.71
Alignments for each domain:
== domain 1 score: 59.3 bits; conditional E-value: 7.9e-19
TIGR02927 129 vempelGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspvaGtlleilaeeddtvevGavlakiGd.dagaedepkeeekpekseaksee 225
v+ ++Ge +teGtv++ l vGd v+ +pl v tdkv++eipspvaG + i + + ++vG v+ +i d ++++++epk e e++ + +
MMSYN1_0228 4 VKFADIGEGLTEGTVAEVLVKVGDVVKEGQPLYFVETDKVNSEIPSPVAGKIAVINISTGQEIKVGDVVIEIDDgTSSSTTEPKVEVV-EENASVVGA 100
78889********************************************************************955566677776654.556666777 PP
TIGR02927 226 kpeaaepkaekkeepkpepkaeekapaakaatektaa..dsspyvtplvrklakekGvdls.....svkGtGvGG 293
+p + + + + ++pk e+k+ e+ + + +t + d p +p + a + v ++ +v G+G+GG
MMSYN1_0228 101 TPVSNDVLPSRAPKPKAETKKTEQVEENASVVGATPVsnDVLPSRAPKPKAEAPKVDVQIEdtfdvCVVGAGIGG 175
777777677777766767666666655555444443322333444444444444433333222222466777776 PP
>> TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.7 0.0 0.9 81 142 170 .. 165 193 .. 157 196 .. 0.89
2 ! 58.3 2.8 1.3e-18 1.2e-16 63 285 .. 264 477 .. 238 627 .. 0.76
Alignments for each domain:
== domain 1 score: -0.7 bits; conditional E-value: 0.9
TIGR02374 142 kaaviGgGLLGLeaaraLknlGldvsvie 170
+ v+G+G+ G a +lGl++ +ie
MMSYN1_0228 165 DVCVVGAGIGGYVTAIKSAQLGLKTLIIE 193
568**********************9998 PP
== domain 2 score: 58.3 bits; conditional E-value: 1.3e-18
TIGR02374 63 yyekhgikllvnervikidreeksvitdagrtlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLk 160
+k++++ + +e v + +k+ i+ ++ + ++Li+a Gs+p lP+pG D+ + i D + ++ k + +viGgG++G+e + +
MMSYN1_0228 264 LLDKNKVTQIKGEAV-AL---DKNTISVNNKNYRVNNLIIASGSTPNHLPLPGFDQGRKDG--IIIDSTRILSVPKIPETLVVIGGGVIGIEFSCLFA 355
445555555554433.33...456677778888999*******************987766..5889999**************************** PP
TIGR02374 161 nlGldvsvielapllmakqlDqtagrlLqrelekk.GltvlleketveivkesvekaerlrfkDGssleadlvvlaaGirPrdeLaaeaGlkvndrrG 257
lG +v v++ p++++ lD+ + +el+++ + v ++ +v+ k++ +++ ++ kD + ++ + v+ ++G + ++ + Gl++++r+
MMSYN1_0228 356 SLGTKVTVLQGLPTILE-MLDKDIIDAMTKELKNRyNIEVITN-ASVKEFKNG-SVVYEIDGKD-QMIKGEYVLESVGRKTSITGFENIGLELTPRKA 449
**************996.6999999999999987514444444.444444444.6888888887.68******************************* PP
TIGR02374 258 iivndsmqtsdPdiyavGecaehngrvy 285
i+vn++ +t+ +ya+G++ ++
MMSYN1_0228 450 IVVNEYQETNLDGVYAIGDVVGKVMLAH 477
******************9975544433 PP
>> TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 50.6 7.1 3.2e-16 2.9e-14 1 312 [. 165 493 .. 165 497 .. 0.80
Alignments for each domain:
== domain 1 score: 50.6 bits; conditional E-value: 3.2e-16
TIGR04018 1 dviiiGaGPiGlaaaieakkaglsyliiek...galvnsiykyPtnmtffstseklei....geiPfi...senekptrkealeYYrrvaekkklnik 88
dv+++GaG G +ai+ + gl++liiek g + + Pt+ + ++ +i e+ ++ +e+ + + l+ v++k + +k
MMSYN1_0228 165 DVCVVGAGIGGYVTAIKSAQLGLKTLIIEKeyyGGVCLNVGCIPTKTLLKTSHVYHDImhkaKELGIVlqnTEKVVIDWAQVLQRKNGVVKKLTGGVK 262
89****************************54456888888899998777665444441111334444000444445667788888888888887777 PP
TIGR04018 89 ly...eevekvkkke...ekfevktekeeyeakkvvvatGyydipnllnvpGedlpkvshyykeah.....pyvkqkvvvvGgknsavdaalelyrkg 175
++v+++k ++ +k +++ ++++y+ +++++a G +pn+l +pG d+ + ++ p + + +vv+Gg ++ + g
MMSYN1_0228 263 YLldkNKVTQIKGEAvalDKNTISVNNKNYRVNNLIIASG--STPNHLPLPGFDQGRKDGIIIDSTrilsvPKIPETLVVIGGGVIGIEFSCLFASLG 358
6533357888877775445667777***************..59**********999888877765111114566789******************** PP
TIGR04018 176 aevtlvvrgeelsekvkyWvkpdlenrikeg.kikalfesevkeieeesvtletpegeveeiendfvlaltGyrpdlelleklgveleedekipvyde 272
++vt++ ++ e + + ++ +k++ +i++ +++vke ++ sv++e +g+ + i+ ++vl +G + ++ +e++g+el+ ++ +++ +
MMSYN1_0228 359 TKVTVLQGLPTILEMLDKDIIDAMTKELKNRyNIEVITNASVKEFKNGSVVYEI-DGKDQMIKGEYVLESVGRKTSITGFENIGLELTPRK--AIVVN 453
*********999999987777777777765438********************9.78888*****************************96..44445 PP
TIGR04018 273 etmEtnveglylaGvvaagletnkifiEngrlhakaiies 312
e Etn++g+y G v++ + + + + + a++i+++
MMSYN1_0228 454 EYQETNLDGVYAIGDVVGKVMLAHTAVKGAIVAANRIAKK 493
668**************99999999998888888888876 PP
>> TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.6 0.1 1.2e-05 0.0011 2 90 .. 161 246 .. 160 258 .. 0.89
2 ! 38.6 0.8 1.3e-12 1.2e-10 86 310 .. 277 496 .. 254 540 .. 0.79
Alignments for each domain:
== domain 1 score: 15.6 bits; conditional E-value: 1.2e-05
TIGR03143 2 eelydlvviGgGpaglsaGiyagraklkvliiekdelGGqititsevvnyPgireitGeelmqemrkqaqdfgvkflqaevldvdlegd 90
e+ +d+ v+G+G g + i +++ lk+liiek+ GG +v P+ + + +++ +++ ++a+++g+ + + e + +d ++
MMSYN1_0228 161 EDTFDVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEYYGGV---CLNVGCIPTKTLLKTSHVYHDIMHKAKELGIVLQNTEKVVIDWAQV 246
6789***********************************5...5788899999999999999999999999999999999888887765 PP
== domain 2 score: 38.6 bits; conditional E-value: 1.3e-12
TIGR03143 86 dlegdiktvktakgdlkalavliatGasprklGfeGeeeftGrGvaycatcdGefftGld.vlviGgGfaaaeeavfltkyakkvtvivrepdf..tc 180
++ d t+ ++++++ ++ia+G++p +l ++G ++ + G+ +t + + ++viGgG e + ++ + kvtv+ p
MMSYN1_0228 277 AVALDKNTISVNNKNYRVNNLIIASGSTPNHLPLPGFDQGRKDGIIIDSTRILSVPKIPEtLVVIGGGVIGIEFSCLFASLGTKVTVLQGLPTIleML 374
4555678999*****************************999********988888766615689***********************9999863235 PP
TIGR03143 181 akaiaekvkanPkievkfnvelkevtGddvlreakfvnnatGeeteykakkdegtfGvfvfvGyvPsselfkgk.velderGyvvtnedletnveGvy 277
+k i +++ ++ ++ ++n+e+ + + ++ ++v + G+ + k e v+ vG + s f+++ +el r +v ne+ etn++Gvy
MMSYN1_0228 375 DKDIIDAMTKE--LKNRYNIEVITNASVKEFKNGSVVYEIDGKDQMIK---GE---YVLESVGRKTSITGFENIgLELTPRKAIVVNEYQETNLDGVY 464
66676666554..66799999987776666677777777777666655...22...25566999999888888559********************** PP
TIGR03143 278 aaGdlrvkelrqvvtavadGaiaateleryvke 310
a+Gd+ k + tav +aa ++ + +++
MMSYN1_0228 465 AIGDVVGKVM-LAHTAVKGAIVAANRIAKKANK 496
*****88865.5679998777788877765543 PP
>> TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.7 0.0 2.1e-05 0.0019 203 248 .. 154 199 .. 126 240 .. 0.83
2 ! 35.8 3.7 9e-12 8.1e-10 285 488 .. 265 471 .. 254 494 .. 0.79
Alignments for each domain:
== domain 1 score: 14.7 bits; conditional E-value: 2.1e-05
TIGR03140 203 aeeaeeekekydvlvvGgGPagaaaaiyaarkGlkvalvaeriGGq 248
+ + + +++dv vvG+G g ai +a+ Glk+ ++ + G
MMSYN1_0228 154 PKVDVQIEDTFDVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEYYGG 199
4556667899***************************998654333 PP
== domain 2 score: 35.8 bits; conditional E-value: 9e-12
TIGR03140 285 leeqkvkkie...teeeakevelesGevlkaksvivatGakWrelgvpGekeylgkGvayCphCdGPlfk.gkkvaviGGGnsGieaaidlaGivehv 378
l+++kv++i+ + +++++++++ + + + +i+a+G+ +l +pG ++ ++ G+ + + k ++ viGGG Gie + +a + ++v
MMSYN1_0228 265 LDKNKVTQIKgeaVALDKNTISVNNKN-YRVNNLIIASGSTPNHLPLPGFDQGRKDGIIIDSTRILSVPKiPETLVVIGGGVIGIEFSCLFASLGTKV 361
556666666643334466677777655.89999************************98866544444441456789********************* PP
TIGR03140 379 tvle....fadelkadkv..lveklkslsnvdiltsaktkeivgdgdkvtglkykdrsseeekkleldGvfvqiGlvpnteflkdavelnrrGeivid 470
tvl+ ++ l d + + ++lk++ n++++t+a+ ke + +g+ v ++ kd+ + e le G i f + +el+ r iv++
MMSYN1_0228 362 TVLQglptILEMLDKDIIdaMTKELKNRYNIEVITNASVKEFK-NGSVVYEIDGKDQMIKGEYVLESVGRKTSIT-----GFENIGLELTPRKAIVVN 453
*997222234556666443378999****************86.6799999999999999988888777766664.....4444459*********** PP
TIGR03140 471 ergrtsvkGifaaGdvtt 488
e +t+++G++a Gdv
MMSYN1_0228 454 EYQETNLDGVYAIGDVVG 471
***************965 PP
>> TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succiny
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.6 5.9 8.7e-16 7.8e-14 2 131 .. 3 131 .. 2 163 .. 0.77
2 ? -2.2 0.1 4.7 4.3e+02 336 354 .. 562 580 .. 558 588 .. 0.86
Alignments for each domain:
== domain 1 score: 49.6 bits; conditional E-value: 8.7e-16
TIGR01347 2 eikvPelaesvteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaeleessaaaeaasekskeekeekaaak 99
++k +++e +te+tvae kvGd+vk+++ + +etDkv+ e++s+++G ++ ++ ++g+ +++g+v+ e+++++++++++++ + e++ +++ +
MMSYN1_0228 3 KVKFADIGEGLTEGTVAEVLVKVGDVVKEGQPLYFVETDKVNSEIPSPVAGKIAVINISTGQEIKVGDVVIEIDDGTSSSTTEPKVEVVEENASVVGA 100
5888999*******************************************************************988888888877766666666666 PP
TIGR01347 100 aekakeaaekkkalspaarklakeegidleav 131
+ +++ +++++ +a +k +e++ ++++v
MMSYN1_0228 101 TPVSNDVLPSRAPKPKAETK-KTEQVEENASV 131
66666666665555444444.33333333333 PP
== domain 2 score: -2.2 bits; conditional E-value: 4.7
TIGR01347 336 iinppqsaiLGmhaikeRP 354
ii p +iLG h i +R
MMSYN1_0228 562 IIEPKYKTILGAHIIGNRA 580
899999*********9996 PP
>> TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.6 0.6 0.0038 0.34 133 201 .. 163 234 .. 152 250 .. 0.80
2 ? 2.7 0.0 0.12 11 118 166 .. 317 368 .. 310 402 .. 0.71
3 ! 23.5 0.8 5.7e-08 5.1e-06 367 427 .. 412 472 .. 390 496 .. 0.78
Alignments for each domain:
== domain 1 score: 7.6 bits; conditional E-value: 0.0038
TIGR01316 133 kkkvaviGaGpaGlavaselakkGhevtvfealhkpGGvlayG.ipefrlpk.eivetev.kklkklGvkfr 201
+ v v+GaG G a + a+ G + + e G l G ip l k + v +++ +k k lG+ ++
MMSYN1_0228 163 TFDVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEYYGGVCLNVGcIPTKTLLKtSHVYHDImHKAKELGIVLQ 234
5789***************************98877777777768988776624566665278899999775 PP
== domain 2 score: 2.7 bits; conditional E-value: 0.12
TIGR01316 118 rehGieee...eekapstkkkvaviGaGpaGlavaselakkGhevtvfealh 166
r++Gi+++ p + + viG G G+ + a G +vtv + l+
MMSYN1_0228 317 RKDGIIIDstrILSVPKIPETLVVIGGGVIGIEFSCLFASLGTKVTVLQGLP 368
6667766622222345556677888888888888888888888888888776 PP
== domain 3 score: 23.5 bits; conditional E-value: 5.7e-08
TIGR01316 367 vtdeevkleadavivaiGqeankiiaedsslktskrGtivvdedletsieGvfaGGdvirG 427
+ +++ +++ + v+ ++G+++ e+ +l+ ++r +ivv+e +et+++Gv+a Gdv+
MMSYN1_0228 412 IDGKDQMIKGEYVLESVGRKTSITGFENIGLELTPRKAIVVNEYQETNLDGVYAIGDVVGK 472
4566788999999********99999*******************************9843 PP
>> TIGR01235 pyruv_carbox: pyruvate carboxylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.0 1.0 9.8e-10 8.8e-08 1082 1142 .. 15 75 .. 4 76 .. 0.93
Alignments for each domain:
== domain 1 score: 28.0 bits; conditional E-value: 9.8e-10
TIGR01235 1082 pGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllvl 1142
G+v ev+vk+G+ v++G++l +e+ k++ + +p +G+++ ++++ G++i+ d+++++
MMSYN1_0228 15 EGTVAEVLVKVGDVVKEGQPLYFVETDKVNSEIPSPVAGKIAVINISTGQEIKVGDVVIEI 75
59*******************************************************9987 PP
>> TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.9 0.1 0.29 26 143 215 .. 161 239 .. 127 258 .. 0.65
2 ! 25.9 0.1 1.5e-08 1.4e-06 143 282 .. 333 470 .. 264 497 .. 0.75
Alignments for each domain:
== domain 1 score: 1.9 bits; conditional E-value: 0.29
TIGR03169 143 kqkakvaviGgGvaGvElalamahr.lkealke........aevtliergeellsglnakvrkklekalkekgvelleeaev 215
+ + +v v+G+G++G a+ a+ lk+ e ++v i + l +++v + + ++ ke g+ l++ ++v
MMSYN1_0228 161 EDTFDVCVVGAGIGGYVTAIKSAQLgLKTLIIEkeyyggvcLNVGCIPTKTLL---KTSHVYHDIMHKAKELGIVLQNTEKV 239
678899*********88777655432655544445566655445555443333...33445555555666666666665555 PP
== domain 2 score: 25.9 bits; conditional E-value: 1.5e-08
TIGR03169 143 kqkakvaviGgGvaGvElalamahrlkealkeaevtliergeellsglnakvrkklekalkek.gvelleeaevaevteeavrle...dgeeleadlv 236
k + +++viGgGv G+E+ a l ++vt+++ ++l+ l++ + ++++k+lk++ ++e++++a+v e ++ +v+ e +++ ++ ++v
MMSYN1_0228 333 KIPETLVVIGGGVIGIEFSCLFA-SL-----GTKVTVLQGLPTILEMLDKDIIDAMTKELKNRyNIEVITNASVKEFKNGSVVYEidgKDQMIKGEYV 424
467899***********975443.23.....3689*********************999987549***************998864334567888888 PP
TIGR03169 237 lg.vagaraqkwlaesgleldekGfievdetLqslsdpeifAaGDvA 282
l v + ++ + +++ glel+ + i v+e+ ++ + + ++A GDv
MMSYN1_0228 425 LEsVGRKTSITGFENIGLELTPRKAIVVNEYQET-NLDGVYAIGDVV 470
7625566777899***************998777.999*******95 PP
>> TIGR02712 urea_carbox: urea carboxylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.9 0.5 2.4e-09 2.2e-07 1140 1200 .. 15 75 .. 8 76 .. 0.95
Alignments for each domain:
== domain 1 score: 26.9 bits; conditional E-value: 2.4e-09
TIGR02712 1140 agrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvl 1200
+g++ +vlv+vgd v++g++l ve+ k++ ++ +pvaGk++ i+++ G++++ Gd+++ +
MMSYN1_0228 15 EGTVAEVLVKVGDVVKEGQPLYFVETDKVNSEIPSPVAGKIAVINISTGQEIKVGDVVIEI 75
688999***************************************************9977 PP
>> TIGR02032 GG-red-SF: geranylgeranyl reductase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.3 0.1 7.2e-09 6.4e-07 1 99 [. 164 255 .. 164 311 .. 0.77
2 ? -0.5 0.3 2.1 1.9e+02 4 29 .. 339 364 .. 338 370 .. 0.93
3 ? 0.1 0.0 1.3 1.2e+02 94 153 .. 380 436 .. 368 465 .. 0.68
Alignments for each domain:
== domain 1 score: 27.3 bits; conditional E-value: 7.2e-09
TIGR02032 1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelprekeCggalskraveelelpkelivnevrkariispngekveieeeeeealvidRkefDelLa 98
+Dv vvGaG+ G +A + a+ Gl++l++ek+ ++ g ++++ + ++ +i+ ++++ i+++n ekv i++ v++R + ++
MMSYN1_0228 164 FDVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEYYGGVCLNVGCIPTKTLLKTSHVYHDIMHKAKELGIVLQNTEKVVIDWA----QVLQR---KNGVV 254
7************************************99999*******9999999*******************999996....56666...33444 PP
TIGR02032 99 e 99
+
MMSYN1_0228 255 K 255
4 PP
== domain 2 score: -0.5 bits; conditional E-value: 2.1
TIGR02032 4 vvvGaGpaGssaAlrlakkGlrVlll 29
vv+G+G G + a+ G +V +l
MMSYN1_0228 339 VVIGGGVIGIEFSCLFASLGTKVTVL 364
9**********************998 PP
== domain 3 score: 0.1 bits; conditional E-value: 1.3
TIGR02032 94 DelLaekAqeagaelllettvlsveiedekvkvevredekkevtakivigAdGakskvak 153
D + e ++ +e+ +++ v++ +++ +v+ e+++ + + +++++v + G k+ +
MMSYN1_0228 380 DAMTKELKNRYNIEVITNASVKE--FKNGSVVYEIDG-KDQMIKGEYVLESVGRKTSITG 436
44444445555667777777776..777788888887.5899***********9998875 PP
>> TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.8 0.8 1.8e-08 1.6e-06 525 581 .. 15 71 .. 5 72 .. 0.94
Alignments for each domain:
== domain 1 score: 24.8 bits; conditional E-value: 1.8e-08
TIGR01108 525 aGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavgev 581
G++ +v v+ Gd vkeG+ l +e+ k+++ei +++aG ++ i + +G++++vg+v
MMSYN1_0228 15 EGTVAEVLVKVGDVVKEGQPLYFVETDKVNSEIPSPVAGKIAVINISTGQEIKVGDV 71
599****************************************************98 PP
>> TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.6 0.1 6.4e-05 0.0057 34 64 .. 15 45 .. 12 49 .. 0.91
2 ! 15.1 0.1 2.2e-05 0.002 28 65 .. 46 83 .. 44 100 .. 0.81
3 ? -3.4 0.0 9.6 8.6e+02 246 275 .. 386 415 .. 383 421 .. 0.77
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 6.4e-05
TIGR01730 34 aGkvtkisvkeGqkVkkGqlLakldddelql 64
+G v++++vk G+ Vk+Gq+L+ +++d+++
MMSYN1_0228 15 EGTVAEVLVKVGDVVKEGQPLYFVETDKVNS 45
79***********************999876 PP
== domain 2 score: 15.1 bits; conditional E-value: 2.2e-05
TIGR01730 28 eiaaevaGkvtkisvkeGqkVkkGqlLakldddelqla 65
ei + vaGk++ i++ Gq++k G++ +++dd + + +
MMSYN1_0228 46 EIPSPVAGKIAVINISTGQEIKVGDVVIEIDDGTSSST 83
677889**************************988876 PP
== domain 3 score: -3.4 bits; conditional E-value: 9.6
TIGR01730 246 lkerssaivVPeeAviedqkgkiVyvvknd 275
lk+r + v+ + +v e ++g++Vy ++ +
MMSYN1_0228 386 LKNRYNIEVITNASVKEFKNGSVVYEIDGK 415
567777778888889999999999998874 PP
>> TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.2 4.3 4.4e-08 4e-06 9 123 .. 11 139 .. 3 163 .. 0.72
Alignments for each domain:
== domain 1 score: 24.2 bits; conditional E-value: 4.4e-08
TIGR01349 9 PtmeeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknyklessas........... 95
++eG++a+ +k GD vkeG+ + +etDk ++ s g +a i + +g + ++v+ ++ + + ++ k +e++as
MMSYN1_0228 11 EGLTEGTVAEVLVKVGDVVKEGQPLYFVETDKVNSEIPSPVAGKIAVINISTGQE-IKVGDVVIEIDDGTSSSTTEPKVEVVEENASvvgatpvsndv 107
5689************************************************977.****98765555555555455555566666678887888888 PP
TIGR01349 96 ....apkpkekaeqsaeesaesakseasaeka 123
apkpk++ +++ + ++++++ a+ ++
MMSYN1_0228 108 lpsrAPKPKAETKKTEQVEENASVVGATPVSN 139
88888888887776666666644433333333 PP
>> TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.1 0.2 9.8e-05 0.0088 2 32 .. 165 195 .. 164 208 .. 0.93
2 ? -3.2 0.0 9 8e+02 153 200 .. 262 308 .. 261 309 .. 0.78
3 ! 8.0 0.3 0.0034 0.3 3 30 .. 338 365 .. 336 370 .. 0.93
4 ? -2.5 0.0 5.2 4.7e+02 146 178 .. 377 409 .. 371 430 .. 0.79
Alignments for each domain:
== domain 1 score: 13.1 bits; conditional E-value: 9.8e-05
TIGR03364 2 dvvvvGaGivGlahAlaaarrGlkVtviers 32
dv vvGaGi G +A++ a+ Glk +ie++
MMSYN1_0228 165 DVCVVGAGIGGYVTAIKSAQLGLKTLIIEKE 195
99***************************97 PP
== domain 2 score: -3.2 bits; conditional E-value: 9
TIGR03364 153 eyLaeekgveflwntavtevetstvrtsrGevhaeqvlVcsgadfetL 200
+yL ++++v+ + ++ + +++++t++ ++++ ++ ++ sg++ ++L
MMSYN1_0228 262 KYLLDKNKVTQIKGE-AVALDKNTISVNNKNYRVNNLIIASGSTPNHL 308
578888777765554.55789999999999999999999999887665 PP
== domain 3 score: 8.0 bits; conditional E-value: 0.0034
TIGR03364 3 vvvvGaGivGlahAlaaarrGlkVtvie 30
+vv+G+G++G+ ++ a+ G kVtv++
MMSYN1_0228 338 LVVIGGGVIGIEFSCLFASLGTKVTVLQ 365
89***********************985 PP
== domain 4 score: -2.5 bits; conditional E-value: 5.2
TIGR03364 146 eaipalaeyLaeekgveflwntavtevetstvr 178
+ i a+++ L++++++e+++n +v+e++++ v
MMSYN1_0228 377 DIIDAMTKELKNRYNIEVITNASVKEFKNGSVV 409
677888888999999999999999999888654 PP
>> TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.6 0.2 0.00017 0.015 381 467 .. 165 254 .. 147 274 .. 0.79
2 ? 5.7 0.1 0.01 0.92 466 537 .. 296 368 .. 255 493 .. 0.51
Alignments for each domain:
== domain 1 score: 11.6 bits; conditional E-value: 0.00017
TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgreela..elvrdlaselkelgvevklGvea..daelvlaekPDav 467
v+vvG+G +G a+++a+ G + +++e+e GG + +p+++ l+ ++ +d++++ kelg+ ++ ++ d ++vl++k +v
MMSYN1_0228 165 DVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEY-YGGVCLNVGCIPTKTLLKtsHVYHDIMHKAKELGIVLQNTEKVviDWAQVLQRKNGVV 254
699*************************9976.6777777788888876642278999999999999998876543115566666666665 PP
== domain 2 score: 5.7 bits; conditional E-value: 0.01
TIGR03997 466 avvlatGsrparpdlagadser....vvtvrevltgeaevggrvlvvDelGfhqatsvaellaargkkveiitsal 537
+++a+Gs p++ +l+g+d+ r +++ + +l+ + + v++ G + + l+a+ g+kv+++
MMSYN1_0228 296 NLIIASGSTPNHLPLPGFDQGRkdgiIIDSTRILSVPKIPETLVVI---GGGVIGIEFSCLFASLGTKVTVLQGLP 368
5666666666666666655433233356666666666555544444...344455555566666666666655443 PP
>> TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.6 0.1 6.2e-05 0.0056 49 83 .. 13 47 .. 11 50 .. 0.91
2 ? 5.5 0.3 0.018 1.6 51 83 .. 52 84 .. 46 100 .. 0.84
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 6.2e-05
TIGR01843 49 legGivreIlVreGdrVkaGqvLveLdatsveada 83
l+ G+v+e+lV+ Gd Vk+Gq+L ++ +v++++
MMSYN1_0228 13 LTEGTVAEVLVKVGDVVKEGQPLYFVETDKVNSEI 47
789********************999998888875 PP
== domain 2 score: 5.5 bits; conditional E-value: 0.018
TIGR01843 51 gGivreIlVreGdrVkaGqvLveLdatsveada 83
G ++ I ++ G+++k G+v +e+d+ + ++ +
MMSYN1_0228 52 AGKIAVINISTGQEIKVGDVVIEIDDGTSSSTT 84
588999*******************98777655 PP
>> TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.4 0.2 0.00013 0.012 1 31 [. 164 194 .. 164 198 .. 0.95
2 ? 5.8 0.2 0.013 1.2 145 202 .. 244 307 .. 213 310 .. 0.71
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 0.00013
TIGR01377 1 fDvivvGaGvmGsaaayqLakrgkkvLLleq 31
fDv vvGaG+ G ++a + a+ g k+L++e+
MMSYN1_0228 164 FDVCVVGAGIGGYVTAIKSAQLGLKTLIIEK 194
9***************************996 PP
== domain 2 score: 5.8 bits; conditional E-value: 0.013
TIGR01377 145 ekalralqelaeal.Gai..vrdgtkvveikrd...ellvtvktkkksyqakklvvtaGaWtsk 202
+ l+ + ++++l G++ ++d++kv++ik + + t+ +++k+y+ ++l+++ G+ ++
MMSYN1_0228 244 AQVLQRKNGVVKKLtGGVkyLLDKNKVTQIKGEavaLDKNTISVNNKNYRVNNLIIASGSTPNH 307
4555555555555413333378*********9755455679*****************987666 PP
>> TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.7 1.9 2.4e-06 0.00022 98 155 .. 19 76 .. 15 77 .. 0.94
Alignments for each domain:
== domain 1 score: 19.7 bits; conditional E-value: 2.4e-06
TIGR00531 98 akpfvevGdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLivie 155
a+ v+vGd vk+g+ + ve k+ ei vagk+ i + gq + g+ +i i+
MMSYN1_0228 19 AEVLVKVGDVVKEGQPLYFVETDKVNSEIPSPVAGKIAVINISTGQEIKVGDVVIEID 76
6778*********************************************999988875 PP
>> TIGR00998 8a0101: efflux pump membrane protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.2 0.1 0.092 8.2 212 233 .. 15 36 .. 7 45 .. 0.77
2 ! 13.6 0.2 6.3e-05 0.0057 38 77 .. 38 79 .. 36 126 .. 0.84
Alignments for each domain:
== domain 1 score: 3.2 bits; conditional E-value: 0.092
TIGR00998 212 dGvvarrkvqvGqvvsagqplm 233
+G va+ v+vG+vv+ gqpl+
MMSYN1_0228 15 EGTVAEVLVKVGDVVKEGQPLY 36
5788888888888888888876 PP
== domain 2 score: 13.6 bits; conditional E-value: 6.3e-05
TIGR00998 38 vkadel..svlsqvsGkvievlkddtdaVkqGdvLvklDptd 77
v++d++ ++ s v+Gk++ ++ ++ +k Gdv +++D+
MMSYN1_0228 38 VETDKVnsEIPSPVAGKIAVINISTGQEIKVGDVVIEIDDGT 79
5555542157789**************************865 PP
>> TIGR03077 not_gcvH: glycine cleavage protein H-like protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.9 0.4 1.3e-05 0.0011 37 81 .. 22 66 .. 11 79 .. 0.90
Alignments for each domain:
== domain 1 score: 16.9 bits; conditional E-value: 1.3e-05
TIGR03077 37 lpsvgslikegevlvilessksaievlspvsgevievnlalkddi 81
l vg ++keg+ l +e+ k e+ spv+g++ +n++ ++i
MMSYN1_0228 22 LVKVGDVVKEGQPLYFVETDKVNSEIPSPVAGKIAVINISTGQEI 66
5689**********************************9877766 PP
>> TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.8 0.1 0.0036 0.32 261 290 .. 15 44 .. 9 47 .. 0.75
2 ! 9.2 0.4 0.0013 0.12 60 95 .. 46 81 .. 38 105 .. 0.81
Alignments for each domain:
== domain 1 score: 7.8 bits; conditional E-value: 0.0036
TIGR03794 261 dGrvlevsltkGdlVeagaslaslevedat 290
+G+v ev ++ Gd+V++g +l +e + +
MMSYN1_0228 15 EGTVAEVLVKVGDVVKEGQPLYFVETDKVN 44
788888888888888888888877776655 PP
== domain 2 score: 9.2 bits; conditional E-value: 0.0013
TIGR03794 60 tiqskgsGqvidlkvkvGdqvkkgdvvarieqpelr 95
+i s+ +G++ +++++G+ +k gdvv i++
MMSYN1_0228 46 EIPSPVAGKIAVINISTGQEIKVGDVVIEIDDGTSS 81
6889999********************999986655 PP
>> TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.9 0.4 6.3e-06 0.00057 2 45 .. 164 206 .. 163 231 .. 0.82
2 ? -1.7 0.5 2.7 2.5e+02 4 30 .. 338 364 .. 337 367 .. 0.92
Alignments for each domain:
== domain 1 score: 16.9 bits; conditional E-value: 6.3e-06
TIGR00031 2 fdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevd 45
fd+ +vGaG+ G v a a+l+ + l++ek + GG c + +
MMSYN1_0228 164 FDVCVVGAGIGGYVTAIKSAQLGLKTLIIEK-EYYGGVCLNVGC 206
9*****************************9.567999877555 PP
== domain 2 score: -1.7 bits; conditional E-value: 2.7
TIGR00031 4 yiivGaGlsGivlaeilaklnkrvlvv 30
++++G G+ Gi ++ a l+ +v v+
MMSYN1_0228 338 LVVIGGGVIGIEFSCLFASLGTKVTVL 364
589*********************987 PP
>> TIGR02730 carot_isom: carotene isomerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.1 0.4 9.9e-06 0.00089 1 32 [. 164 195 .. 164 203 .. 0.92
2 ? -2.8 1.1 5.5 5e+02 4 30 .. 339 365 .. 337 367 .. 0.92
3 ? -3.4 0.0 8 7.2e+02 452 481 .. 454 482 .. 447 492 .. 0.60
Alignments for each domain:
== domain 1 score: 16.1 bits; conditional E-value: 9.9e-06
TIGR02730 1 ydaivigsgigglvtatqlaakgakvlvleky 32
+d+ v+g+gigg vta + a g+k+l++ek
MMSYN1_0228 164 FDVCVVGAGIGGYVTAIKSAQLGLKTLIIEKE 195
89***************************985 PP
== domain 2 score: -2.8 bits; conditional E-value: 5.5
TIGR02730 4 ivigsgigglvtatqlaakgakvlvle 30
+vig g+ g+ ++ +a+ g+kv vl+
MMSYN1_0228 339 VVIGGGVIGIEFSCLFASLGTKVTVLQ 365
89*********************9996 PP
== domain 3 score: -3.4 bits; conditional E-value: 8
TIGR02730 452 pfnrtaidglycvgdstfpgqglnavafsg 481
++ t +dg+y +gd + l a g
MMSYN1_0228 454 EYQETNLDGVYAIGDVVGK-VMLAHTAVKG 482
5788999999999997532.2233344444 PP
>> TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.4 0.7 1.8e-05 0.0016 1 31 [. 164 194 .. 164 199 .. 0.96
2 ? -0.8 0.4 1.5 1.4e+02 4 29 .. 339 364 .. 337 373 .. 0.87
Alignments for each domain:
== domain 1 score: 15.4 bits; conditional E-value: 1.8e-05
TIGR03378 1 fDviiiGgGlaGlscalrlaeaGkktaiiaa 31
fDv ++G+G+ G+ +a++ a+ G kt+ii +
MMSYN1_0228 164 FDVCVVGAGIGGYVTAIKSAQLGLKTLIIEK 194
9***************************975 PP
== domain 2 score: -0.8 bits; conditional E-value: 1.5
TIGR03378 4 iiiGgGlaGlscalrlaeaGkktaii 29
++iGgG+ G+ + a G+k+ ++
MMSYN1_0228 339 VVIGGGVIGIEFSCLFASLGTKVTVL 364
89********9999999999998876 PP
>> TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.0 1.6 0.00066 0.059 3 39 .. 165 201 .. 163 206 .. 0.92
2 ! 6.8 0.3 0.0062 0.56 3 31 .. 337 365 .. 335 369 .. 0.92
Alignments for each domain:
== domain 1 score: 10.0 bits; conditional E-value: 0.00066
TIGR02733 3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGC 39
+v v+GaGi+G +a a+ Gl+ ++e++ G C
MMSYN1_0228 165 DVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEYYGGVC 201
699***************************9998888 PP
== domain 2 score: 6.8 bits; conditional E-value: 0.0062
TIGR02733 3 svvviGaGiaGltaaallakrGlevtlle 31
++vviG+G+ G+ + l+a G +vt+l+
MMSYN1_0228 337 TLVVIGGGVIGIEFSCLFASLGTKVTVLQ 365
689***********************985 PP
>> TIGR00292 TIGR00292: thiazole biosynthesis enzyme
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.7 0.4 3.5e-05 0.0031 22 92 .. 164 238 .. 155 288 .. 0.69
2 ? -2.0 0.2 4.4 3.9e+02 24 50 .. 338 364 .. 333 366 .. 0.87
Alignments for each domain:
== domain 1 score: 14.7 bits; conditional E-value: 3.5e-05
TIGR00292 22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGGGswgGGmlfskivveke..akelL...delgiryedegd 92
Dv +vGaG G +a a+ glk++++e++ GG G + +k ++ ++++ +elgi ++++++
MMSYN1_0228 164 FDVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEYY-GGVCLNVGCIPTKTLLKTShvYHDIMhkaKELGIVLQNTEK 238
59****************************9975.44444444444444433321134554222567777666665 PP
== domain 2 score: -2.0 bits; conditional E-value: 4.4
TIGR00292 24 viivGaGpsGLtaayylakeglkvvvl 50
+++G+G G+ + +a g kv vl
MMSYN1_0228 338 LVVIGGGVIGIEFSCLFASLGTKVTVL 364
5788999**************999998 PP
>> TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.9 0.0 4.5 4e+02 368 413 .. 159 203 .. 150 263 .. 0.63
2 ! 12.2 0.0 0.00012 0.011 451 576 .. 286 411 .. 249 431 .. 0.77
Alignments for each domain:
== domain 1 score: -2.9 bits; conditional E-value: 4.5
TIGR03996 368 raatpgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvri 413
++ + dv vvG G G +a +a G + ++e+ +GG+
MMSYN1_0228 159 QIEDTFDVCVVGAGIGGYVTAIKSAQLGLKTLIIEKE-YYGGVCLN 203
5666778999999999999998888888887777764.45665444 PP
== domain 2 score: 12.2 bits; conditional E-value: 0.00012
TIGR03996 451 eldaaraaGevvvlatGsvarplpapvdatvrvldaaevleaddalaeGpvvvidplGGpvgvavaealaarGrdvsivtpdsvvGsrlgasGdlada 548
+++++ + + +++a+Gs+++ lp p + r ++ + ++++ p ++ GG +g+ ++ +a++G +v+++ + + l d++da
MMSYN1_0228 286 SVNNKNYRVNNLIIASGSTPNHLPLPGFDQGRKDGIIIDSTRILSVPKIPETLVVIGGGVIGIEFSCLFASLGTKVTVLQGLPTILEMLDK--DIIDA 381
345666677889**************6666665555444444445999999999999**********************999999988887..99999 PP
TIGR03996 549 ntrl..qragvtrqlasrvveiardglvle 576
t+ +r ++ +++v+e +++++v e
MMSYN1_0228 382 MTKElkNRYNIEVITNASVKEFKNGSVVYE 411
987412466777777888888888887765 PP
>> TIGR00527 gcvH: glycine cleavage system H protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.8 0.3 0.00024 0.021 43 81 .. 22 60 .. 11 70 .. 0.90
Alignments for each domain:
== domain 1 score: 12.8 bits; conditional E-value: 0.00024
TIGR00527 43 lPevGaevsaeeslgsvesvkaaselyaPvdGtvvevne 81
l vG+ v+ +++l ve+ k se+ +Pv G++ +n
MMSYN1_0228 22 LVKVGDVVKEGQPLYFVETDKVNSEIPSPVAGKIAVINI 60
6689******************************99985 PP
>> TIGR02734 crtI_fam: phytoene desaturase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.8 0.5 0.00019 0.017 1 31 [. 166 196 .. 166 201 .. 0.91
2 ? 3.9 0.6 0.047 4.2 2 28 .. 339 365 .. 338 369 .. 0.94
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 0.00019
TIGR02734 1 avViGaGlgGLAlAirLaaaGievtvlekrd 31
++V+GaG+gG +Ai+ a+ G ++ ++ek+
MMSYN1_0228 166 VCVVGAGIGGYVTAIKSAQLGLKTLIIEKEY 196
68**************************974 PP
== domain 2 score: 3.9 bits; conditional E-value: 0.047
TIGR02734 2 vViGaGlgGLAlAirLaaaGievtvle 28
vViG+G+ G+ + + a+ G++vtvl+
MMSYN1_0228 339 VVIGGGVIGIEFSCLFASLGTKVTVLQ 365
8************************96 PP
>> TIGR00275 TIGR00275: flavoprotein, HI0933 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.9 0.7 0.0031 0.27 1 30 [. 166 195 .. 166 206 .. 0.92
2 ? 3.5 0.1 0.07 6.3 126 159 .. 267 303 .. 208 309 .. 0.81
3 ? 0.5 0.2 0.55 50 2 33 .. 339 370 .. 338 375 .. 0.87
4 ! 7.5 0.1 0.0041 0.37 105 166 .. 375 436 .. 349 459 .. 0.81
Alignments for each domain:
== domain 1 score: 7.9 bits; conditional E-value: 0.0031
TIGR00275 1 viiiGgGaaGlmaAitaaeegakVlllEkn 30
v ++G+G G ++Ai+ a+ g+k l++Ek+
MMSYN1_0228 166 VCVVGAGIGGYVTAIKSAQLGLKTLIIEKE 195
679*************************97 PP
== domain 2 score: 3.5 bits; conditional E-value: 0.07
TIGR00275 126 eskvksikkee...ekfevetekkeleakkvilatGg 159
+ kv++ik e+ +k ++++++k+++++++i+a G+
MMSYN1_0228 267 KNKVTQIKGEAvalDKNTISVNNKNYRVNNLIIASGS 303
567888866651124466777***************9 PP
== domain 3 score: 0.5 bits; conditional E-value: 0.55
TIGR00275 2 iiiGgGaaGlmaAitaaeegakVlllEknkki 33
++iGgG G+ + a+ g kV++l i
MMSYN1_0228 339 VVIGGGVIGIEFSCLFASLGTKVTVLQGLPTI 370
8************99999*******9876655 PP
== domain 4 score: 7.5 bits; conditional E-value: 0.0041
TIGR00275 105 aksvldaLlkelke.lgvevlteskvksikkeeekfevetekkeleakkvilatGgksypklG 166
k+++da++kelk+ +++ev t+++vk++k+ +e++ +++ ++ + v+ ++G + +G
MMSYN1_0228 375 DKDIIDAMTKELKNrYNIEVITNASVKEFKNGSVVYEIDGKDQMIKGEYVLESVGR-KTSITG 436
589********985379*******************************99999887.444555 PP
>> TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.0 0.00024 0.021 19 75 .. 158 210 .. 145 308 .. 0.69
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 0.00024
TIGR03329 19 lkgdteadvaivGGGftGlwtaillkqaepkldvlvleadlcGaGasGrnGGclltw 75
++ + + dv++vG G G tai k a+ l+ l++e++ G+ n Gc+ t
MMSYN1_0228 158 VQIEDTFDVCVVGAGIGGYVTAI--KSAQLGLKTLIIEKEYYGG--VCLNVGCIPTK 210
4556789**************97..67778999*******9876..45788998664 PP
>> TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.3 0.3 0.0097 0.87 1 32 [. 165 195 .. 165 202 .. 0.91
2 ? 4.7 0.2 0.029 2.6 2 34 .. 338 369 .. 337 433 .. 0.67
Alignments for each domain:
== domain 1 score: 6.3 bits; conditional E-value: 0.0097
TIGR01988 1 divIvGgGlvGlalAlaLassadlkvalveak 32
d+ +vG+G+ G ++A++ a+ + lk++++e++
MMSYN1_0228 165 DVCVVGAGIGGYVTAIKSAQLG-LKTLIIEKE 195
89***************99777.******986 PP
== domain 2 score: 4.7 bits; conditional E-value: 0.029
TIGR01988 2 ivIvGgGlvGlalAlaLassadlkvalveakaa 34
+v++GgG++G +++ +as + kv++++ ++
MMSYN1_0228 338 LVVIGGGVIGIEFSCLFASLG-TKVTVLQGLPT 369
599***************777.99999887654 PP
>> TIGR02352 thiamin_ThiO: glycine oxidase ThiO
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.0 0.7 0.014 1.3 1 31 [. 166 196 .. 166 202 .. 0.91
2 ? 7.2 0.7 0.0062 0.56 2 28 .. 339 365 .. 338 369 .. 0.93
Alignments for each domain:
== domain 1 score: 6.0 bits; conditional E-value: 0.014
TIGR02352 1 vlviGgGviGlsvAveLakrghkvtllekde 31
v v+G+G+ G ++A++ a+ g k+ ++ek+
MMSYN1_0228 166 VCVVGAGIGGYVTAIKSAQLGLKTLIIEKEY 196
68************************99985 PP
== domain 2 score: 7.2 bits; conditional E-value: 0.0062
TIGR02352 2 lviGgGviGlsvAveLakrghkvtlle 28
+viGgGviG a+ g kvt+l+
MMSYN1_0228 339 VVIGGGVIGIEFSCLFASLGTKVTVLQ 365
8***********************986 PP
>> TIGR00551 nadB: L-aspartate oxidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.8 0.1 0.4 36 2 30 .. 163 191 .. 162 202 .. 0.79
2 ? -1.7 0.1 2.2 2e+02 4 30 .. 337 364 .. 336 369 .. 0.82
3 ? -0.9 0.0 1.3 1.2e+02 128 155 .. 376 403 .. 367 425 .. 0.85
4 ? 8.7 0.0 0.0016 0.15 336 356 .. 450 470 .. 448 529 .. 0.75
Alignments for each domain:
== domain 1 score: 0.8 bits; conditional E-value: 0.4
TIGR00551 2 eadvvviGsGaagLsaalalaekyrvvvl 30
++dv v+G+G+ g a+ a+ + +++
MMSYN1_0228 163 TFDVCVVGAGIGGYVTAIKSAQLGLKTLI 191
689***************99887764333 PP
== domain 2 score: -1.7 bits; conditional E-value: 2.2
TIGR00551 4 dvvviGsGaagLsaalalaekyr.vvvl 30
++vviG+G+ g+ + +a+ ++ v+vl
MMSYN1_0228 337 TLVVIGGGVIGIEFSCLFASLGTkVTVL 364
579*********9988888777668887 PP
== domain 3 score: -0.9 bits; conditional E-value: 1.3
TIGR00551 128 revistLlkkakaepkveilerevaldl 155
+ +i++++k+ k++ ++e+++++ + +
MMSYN1_0228 376 KDIIDAMTKELKNRYNIEVITNASVKEF 403
7899999*************99887765 PP
== domain 4 score: 8.7 bits; conditional E-value: 0.0016
TIGR00551 336 isvdaygrtevkGLYaiGeva 356
i+v++y +t++ G+YaiG+v
MMSYN1_0228 450 IVVNEYQETNLDGVYAIGDVV 470
89****************974 PP
>> TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.5 0.1 0.012 1 1 37 [. 166 201 .. 166 225 .. 0.87
2 ? 2.4 0.3 0.2 18 2 29 .. 339 366 .. 338 370 .. 0.91
3 ? -2.8 0.0 7.6 6.8e+02 270 346 .. 485 558 .. 472 586 .. 0.71
Alignments for each domain:
== domain 1 score: 6.5 bits; conditional E-value: 0.012
TIGR03467 1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRa 37
v vvG+G+ G A++ a+ G+++ ++E ++ GG +
MMSYN1_0228 166 VCVVGAGIGGYVTAIKSAQLGLKTLIIEK-EYYGGVC 201
78***********************9996.4667766 PP
== domain 2 score: 2.4 bits; conditional E-value: 0.2
TIGR03467 2 vvvGgGlAGLaAAveLaraGvrvtllEa 29
vv+GgG+ G+ + a+ G +vt+l
MMSYN1_0228 339 VVIGGGVIGIEFSCLFASLGTKVTVLQG 366
8************************875 PP
== domain 3 score: -2.8 bits; conditional E-value: 7.6
TIGR03467 270 lpeedlaaklaalesspIttvhlrldrevklpaplvglvgglaqWlfdrgelageegllavvvSaar.dledlereel 346
++++++a+k+++ +++ I+ + r ++ + ++p v ++g++ q l +++ +e + +++ Sa + +l+d + +e
MMSYN1_0228 485 VAANRIAKKANKDHAEDIVMDYDRIPSCI-YTHPEVSMIGKTEQQLKQEN---IEYKTFKFPFSAIGkALADDDTSEF 558
44457777888888888888888888888.88999999999998877766...4556666666664313445555555 PP
>> TIGR01790 carotene-cycl: lycopene cyclase family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.3 0.2 0.0029 0.26 1 30 [. 165 194 .. 165 201 .. 0.93
2 ? -0.3 0.2 1.2 1.1e+02 2 33 .. 338 369 .. 337 372 .. 0.91
Alignments for each domain:
== domain 1 score: 8.3 bits; conditional E-value: 0.0029
TIGR01790 1 DliviGgGlAglaiAlelakpglrvqliea 30
D+ v+G+G g + A ++a+ gl+ +ie
MMSYN1_0228 165 DVCVVGAGIGGYVTAIKSAQLGLKTLIIEK 194
99************************9994 PP
== domain 2 score: -0.3 bits; conditional E-value: 1.2
TIGR01790 2 liviGgGlAglaiAlelakpglrvqlieaapk 33
l+viGgG g+ + a g +v ++++ p+
MMSYN1_0228 338 LVVIGGGVIGIEFSCLFASLGTKVTVLQGLPT 369
79***********************9998876 PP
>> TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.8 0.2 0.0066 0.59 1 32 [. 165 195 .. 165 203 .. 0.94
2 ? 2.1 0.7 0.17 16 2 29 .. 338 364 .. 337 372 .. 0.91
3 ? -0.6 0.0 1.2 1e+02 106 164 .. 377 434 .. 371 453 .. 0.79
Alignments for each domain:
== domain 1 score: 6.8 bits; conditional E-value: 0.0066
TIGR01984 1 dviivGgglvGlslAlaLsrksklkialieak 32
dv +vG+g+ G ++A+ ++ + lk+ +ie++
MMSYN1_0228 165 DVCVVGAGIGGYVTAIKSAQLG-LKTLIIEKE 195
899*******************.*******97 PP
== domain 2 score: 2.1 bits; conditional E-value: 0.17
TIGR01984 2 viivGgglvGlslAlaLsrksklkiali 29
++++Ggg++G+ ++ +++ + k++++
MMSYN1_0228 338 LVVIGGGVIGIEFSCLFASLG-TKVTVL 364
689******************.999887 PP
== domain 3 score: -0.6 bits; conditional E-value: 1.2
TIGR01984 106 dlkqallkrlaekkkiklyapaelkeierekdeaevkldneqkleakLlvaAdGanskv 164
d+ a++k+l++ +i+++++a++ke ++ + +e+ +++ ++++ + G + +
MMSYN1_0228 377 DIIDAMTKELKNRYNIEVITNASVKEFKNGSVVYEIDGKDQM-IKGEYVLESVGRKTSI 434
677899999*****************9999988888876654.8888777777766655 PP
>> TIGR01813 flavo_cyto_c: flavocytochrome c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.2 1.1 0.00028 0.026 1 37 [. 165 199 .. 165 225 .. 0.87
2 ? -3.3 0.1 7.2 6.4e+02 131 158 .. 377 405 .. 375 424 .. 0.78
3 ? 3.2 0.1 0.079 7.1 395 421 .. 447 473 .. 439 488 .. 0.88
4 ? -1.6 0.0 2.2 2e+02 153 219 .. 558 625 .. 553 629 .] 0.69
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 0.00028
TIGR01813 1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGG 37
dv vvG+G+ G+ +a++ + g + +++eK+ ++GG
MMSYN1_0228 165 DVCVVGAGIGGYVTAIKSAQLG-LKTLIIEKE-YYGG 199
799*******************.889999*96.5676 PP
== domain 2 score: -3.3 bits; conditional E-value: 7.2
TIGR01813 131 eivqklskkakk.egvelrlnskvedlik 158
+i+++++k++k+ +++e+ +n++v ++ +
MMSYN1_0228 377 DIIDAMTKELKNrYNIEVITNASVKEFKN 405
78999999988625799999999988754 PP
== domain 3 score: 3.2 bits; conditional E-value: 0.079
TIGR01813 395 tkaeVldensekpikgLfAaGEvtGgv 421
ka V++e +e+ ++g++A G+v G v
MMSYN1_0228 447 RKAIVVNEYQETNLDGVYAIGDVVGKV 473
58999***9*9*************987 PP
== domain 4 score: -1.6 bits; conditional E-value: 2.2
TIGR01813 153 ved.likddqgqvtGvkvkekgkkikikaakaVvlatGGfgsnkelikkydPelke.lestnqkgatgd 219
+++ +i+ + ++ G ++ +++ + i + aV+ + G ++ + i + +P+++e ++ ++++ tg
MMSYN1_0228 558 FVKiIIEPKYKTILGAHIIGNRATEMISEIAAVIECEGTITEIANTI-HPHPTMSEaIGEAAEALETGK 625
4451456677899**************999****9999877644433.345666665666666666665 PP
>> TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.0 0.6 0.014 1.3 1 31 [. 165 195 .. 165 200 .. 0.92
2 ? 1.2 0.5 0.39 35 2 29 .. 338 365 .. 337 370 .. 0.92
Alignments for each domain:
== domain 1 score: 6.0 bits; conditional E-value: 0.014
TIGR03197 1 kvavIGaGiAgaalalsLarrGvqvtllekd 31
+v v+GaGi g ++a + a+ G++ ++ek+
MMSYN1_0228 165 DVCVVGAGIGGYVTAIKSAQLGLKTLIIEKE 195
589*********************9999986 PP
== domain 2 score: 1.2 bits; conditional E-value: 0.39
TIGR03197 2 vavIGaGiAgaalalsLarrGvqvtlle 29
+vIG+G+ g+ a+ G +vt+l+
MMSYN1_0228 338 LVVIGGGVIGIEFSCLFASLGTKVTVLQ 365
58************************86 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (629 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 355 (0.0790998); expected 89.8 (0.02)
Passed bias filter: 162 (0.0360963); expected 89.8 (0.02)
Passed Vit filter: 66 (0.0147059); expected 4.5 (0.001)
Passed Fwd filter: 50 (0.0111408); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 50 [number of targets reported over threshold]
# CPU time: 0.63u 0.17s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 2316.08
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0228 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0229 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0229.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0229/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0229 [L=322]
Description: pta: phosphate acetyltransferase 5=Equivalog Metabolic process
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.1e-96 320.0 0.5 4.7e-96 319.8 0.5 1.0 1 TIGR00651 pta: phosphate acetyltransferase
1.5e-12 45.2 0.1 2.2e-12 44.7 0.1 1.2 1 TIGR02706 P_butyryltrans: phosphate butyryltransferase
2.4e-12 45.0 0.1 6.2e-12 43.6 0.0 1.6 2 TIGR02709 branched_ptb: branched-chain phosphotransacylase
0.00022 18.4 0.2 0.00043 17.5 0.1 1.5 2 TIGR00182 plsX: fatty acid/phospholipid synthesis protein Pl
Domain annotation for each model (and alignments):
>> TIGR00651 pta: phosphate acetyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 319.8 0.5 4.1e-99 4.7e-96 1 303 [. 20 317 .. 20 318 .. 0.97
Alignments for each domain:
== domain 1 score: 319.8 bits; conditional E-value: 4.1e-99
TIGR00651 1 ivlPEgseervlkAaallaekkiaekvllvnkeeevknkakevnlklgkvvvedpdvskdiekyverlyekrkhkGvtekeareqlrDevslaallve 98
iv+PEg++e + a++l+++k+ ++ll+++++ev++++k+ n +++++ +++ d++ ++ e+++++rk k +t + a++ ++ +++++a+lv+
MMSYN1_0229 20 IVFPEGESEIIQSVAKTLVDEKLGLPILLFKSSKEVPSEIKN-NSSIKTICLDEFDTK----EFSEEFVKLRKGK-ATIEVAHQVMQLPNYVGAMLVK 111
8************************************77665.778899999999998....9************.99******************** PP
TIGR00651 99 lgeadglvsGavsttaktlrpalqiiktlegvklvssvfimekeeevlvfaDCavavdPnaeeLAeiAlqsaksakslgeeepkvallsystkgsgkg 196
l++ad + sG +tta+t+rpalqii+t++g +++ss+fim+k++e ++f+DCa++++P++e+L ei ++++ak+l+ +++ allsyst+gsgkg
MMSYN1_0229 112 LNQADCMLSGLNNTTADTIRPALQIIGTKPGYNIASSIFIMSKGDENYIFTDCALNIKPTSEQLVEITQMAVDFAKTLNVKNVEAALLSYSTNGSGKG 209
************************************************************************************************** PP
TIGR00651 197 eevekvkeAvkilkekepdllldGelqfDaAlvekvaekkapesevagk.anvfvFPdLdaGnigYkivqRladaeaiGPilqGlakPvnDLsRGasv 293
e+v++v++Av+ilk + d + +Ge+qfDaA+ +k + kk ++ ++ + ++fvFPd++aGnigYki+qR++++eaiGP+++Gl++PvnDLsRGa+
MMSYN1_0229 210 EDVDRVHKAVEILKSSQNDYVCEGEIQFDAAFDKKTRDKKFKNCLLTKQtPDIFVFPDINAGNIGYKIAQRMGGFEAIGPFVLGLNQPVNDLSRGATF 307
*******************************************987665169********************************************** PP
TIGR00651 294 edivnvviit 303
d++n++i+t
MMSYN1_0229 308 IDVLNTAIMT 317
*******998 PP
>> TIGR02706 P_butyryltrans: phosphate butyryltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.7 0.1 2e-15 2.2e-12 81 280 .. 108 307 .. 79 320 .. 0.83
Alignments for each domain:
== domain 1 score: 44.7 bits; conditional E-value: 2e-15
TIGR02706 81 rlvsegkadvlmkGlvd.tatllksvlnkevGlrtgkvlshvavfevpefdrllfltdaalniaPelkekvdiinnavkvahaiGievPkvavlaave 177
lv+ ++ad ++ Gl + ta ++ l+ +G + g ++ ++f + + d + td+alni P ++ v+i + av+ a+++ +++ +a l+
MMSYN1_0229 108 MLVKLNQADCMLSGLNNtTADTIRPALQ-IIGTKPGYNIAS-SIFIMSKGDENYIFTDCALNIKPTSEQLVEITQMAVDFAKTLNVKNVEAALLS-YS 202
58999*********98725789999996.69****999874.7999999999999********************************99988776.55 PP
TIGR02706 178 vvnpkmeatvdaallakmserGqikgcivdGPlaldnavseeaakhkgvegeva.GkadilllPdieagnvlyksltylak.akvgailvGakaPvvl 273
+ + vd a + ++ + +G + +d a ++++ +k + ++ +di+++Pdi+agn+ yk + +g + G ++Pv
MMSYN1_0229 203 TNGSGKGEDVDRVHKAVEILKSSQNDYVCEGEIQFDAAFDKKTRDKKFKNCLLTkQTPDIFVFPDINAGNIGYKIAQRMGGfEAIGPFVLGLNQPVND 300
666666778998888877777777899*************987655544444431458****************999998625688999999999999 PP
TIGR02706 274 tsradsa 280
sr ++
MMSYN1_0229 301 LSRGATF 307
8887666 PP
>> TIGR02709 branched_ptb: branched-chain phosphotransacylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.9 0.0 0.42 4.7e+02 11 42 .. 27 58 .. 22 100 .. 0.77
2 ! 43.6 0.0 5.5e-15 6.2e-12 108 255 .. 154 304 .. 103 311 .. 0.76
Alignments for each domain:
== domain 1 score: -1.9 bits; conditional E-value: 0.42
TIGR02709 11 peilqlvkkalkeaeqplqfivfdtnenldte 42
ei+q v k+l + + l +++f + +++ +e
MMSYN1_0229 27 SEIIQSVAKTLVDEKLGLPILLFKSSKEVPSE 58
68999999999998888888888877766544 PP
== domain 2 score: 43.6 bits; conditional E-value: 5.5e-15
TIGR02709 108 pagktflltdcamniaptqatlieivenakevaqklglhhpkiallsaaenfnpkmps.svlakevtahfndqqeatvfgplsldlatseeavahkry 204
+++tdca+ni pt l+ei + a + a+ l ++ alls + n k + k v q++ g + +d a +++ k++
MMSYN1_0229 154 KGDENYIFTDCALNIKPTSEQLVEITQMAVDFAKTLNVKNVEAALLSYSTNGSGKGEDvDRVHKAVEILKSSQNDYVCEGEIQFDAAFDKKT-RDKKF 250
3456899*********************************************999765156788888888899999999******8887665.56677 PP
TIGR02709 205 sgpimgd..adilvvptidvgnclyksltlf.ghakvggtivgtkvpvvltsrs 255
++ di+v p i+ gn yk + g +g ++g + pv sr
MMSYN1_0229 251 KNCLLTKqtPDIFVFPDINAGNIGYKIAQRMgGFEAIGPFVLGLNQPVNDLSRG 304
7776654226****************8765516788999999*99999887775 PP
>> TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.5 0.1 3.8e-07 0.00043 82 202 .. 104 227 .. 22 242 .. 0.68
2 ? -3.5 0.0 0.95 1.1e+03 270 292 .. 276 298 .. 273 315 .. 0.83
Alignments for each domain:
== domain 1 score: 17.5 bits; conditional E-value: 3.8e-07
TIGR00182 82 qvalnlvkegrAdavisAGn..sgalmslallrlgrikgierpAlvtllPtvnkkkfvlLDvGAnvdckpkeLvqfalmgsvyakkvlevksPkvgLL 177
+v++ lvk ++Ad ++s n ++ ++ al ++g g + + ++ ++ +++ ++ D n + ++++Lv+ + m+ +ak +l+vk+ +LL
MMSYN1_0229 104 YVGAMLVKLNQADCMLSGLNntTADTIRPALQIIGTKPGYNIA-SSIFIMSKGDENYIFTDCALNIKPTSEQLVEITQMAVDFAK-TLNVKNVEAALL 199
567779999****999976511333445566667766665543.33344566788999*************************97.7899******** PP
TIGR00182 178 niGeE.ekKGndl..vketfklLkedke 202
+ ++ + KG d+ v+++ ++Lk+ ++
MMSYN1_0229 200 SYSTNgSGKGEDVdrVHKAVEILKSSQN 227
998763568876522779999**99875 PP
== domain 2 score: -3.5 bits; conditional E-value: 0.95
TIGR00182 270 slkkkvdyanygGAvllGlnklv 292
++++++ + G +lGln++v
MMSYN1_0229 276 KIAQRMGGFEAIGPFVLGLNQPV 298
57889999999999999999887 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (322 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 172 (0.0383244); expected 89.8 (0.02)
Passed bias filter: 117 (0.0260695); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 2433.71
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0229 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0230 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0230.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0230/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0230 [L=393]
Description: ackA: acetate kinase 5=Equivalog Metabolic process
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-154 510.9 6.0 5.4e-154 510.7 6.0 1.0 1 TIGR00016 ackA: acetate kinase
2.1e-17 61.1 4.3 1.1e-16 58.8 4.3 1.9 1 TIGR02707 butyr_kinase: butyrate kinase
Domain annotation for each model (and alignments):
>> TIGR00016 ackA: acetate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 510.7 6.0 2.4e-157 5.4e-154 6 404 .. 2 392 .. 1 393 [] 0.97
Alignments for each domain:
== domain 1 score: 510.7 bits; conditional E-value: 2.4e-157
TIGR00016 6 ilvlnaGssslkfalldaensekvllsglverikleeariktvedgekkeeeklaiedheeavkkllntlkkdkkilkelseialiGHRvvhGgekft 103
ilv+n+Gsss+kf+l+d++++ + +l+gl+eri ++++ + e++++k +++ +dhe+a++ +ln+l + ki+ + +ei+ +G RvvhGge +
MMSYN1_0230 2 ILVINSGSSSIKFKLFDTSKTIEPILDGLAERIGIDGF--LKFEHNNQKYKFEDTLPDHEHAIQLILNKLL-ELKIISNIDEINGVGFRVVHGGEI-S 95
9******************999999*************..6679999************************.7*********************97.6 PP
TIGR00016 104 esvivtdevlkkikdiselAPlHnpaelegieavlklkvllkaknvavFDtafHqtipeeaylYalPyslykelgvRrYGfHGtshkyvtqraaklln 201
+s i+tde+l+ki+d ++lAPlHnpa++++i+av+ k +++++ va+FDtafHqt+pe +ylY++Py++y+e+gvR+YGfHG+s++y+ ++++++ln
MMSYN1_0230 96 HSSIITDEILSKIQDSVKLAPLHNPAAIIAIKAVK--KLMPNTNMVACFDTAFHQTMPEVNYLYTVPYKWYEEFGVRKYGFHGISYEYIVNKSSEILN 191
77899******************************..6677778****************************************************** PP
TIGR00016 202 kplddlnlivcHlGnGasvsavknGksidtsmGltPLeGlvmGtRsGdiDpaiisylaetlglsldeieetlnkksGllgisglssDlRdildkkeeg 299
k+ ++lnlivcHlGnGas+s +k+Gks+dtsmGltPL+Gl+mGtRsGdiD +i y+a+++++ + i++tlnk+sGllg+s++s+D+Rd+l++++++
MMSYN1_0230 192 KKKENLNLIVCHLGNGASISCIKDGKSYDTSMGLTPLAGLMMGTRSGDIDVSICEYIAKQTNTDIFTITQTLNKQSGLLGLSQVSADMRDVLEQYDKN 289
************************************************************************************************** PP
TIGR00016 300 neeaklAlkvyvhRiakyigkyiaslegelDaivFtgGiGenaaevrelvleklevlGlkldlelnnaarsgkesvisteeskvkvlviptneelvia 397
+++a +A++ yv+ +a++i ky++ l+ +Da+vFt+GiGena +r+l+++k+++l l++d+++n+ a++ + ++is+eesk+ v++i+tnee++i
MMSYN1_0230 290 DKKAVIAVEKYVQIVADFIVKYANYLDS-IDAVVFTAGIGENADVIRDLICKKVKLLDLQIDQDKNQ-AKYSDYKLISSEESKIPVYAIRTNEEKMIC 385
**************************66.*************************************9.9***************************** PP
TIGR00016 398 eDalrla 404
D+l+l+
MMSYN1_0230 386 LDTLNLI 392
****997 PP
>> TIGR02707 butyr_kinase: butyrate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 58.8 4.3 4.9e-20 1.1e-16 2 318 .. 2 343 .. 1 349 [. 0.71
Alignments for each domain:
== domain 1 score: 58.8 bits; conditional E-value: 4.9e-20
TIGR02707 2 vlvinPGststklavfedekll..leetl..rhsveelakfekvidqlefr.....kevilevleekGidls...kldavvgrGGllkPiegG....t 83
+lvin Gs s k +f+ k++ + + l r ++ + kfe+ ++++f +e+ +++ +k ++l+ ++d + g G ++ ++gG
MMSYN1_0230 2 ILVINSGSSSIKFKLFDTSKTIepILDGLaeRIGIDGFLKFEHNNQKYKFEdtlpdHEHAIQLILNKLLELKiisNIDEINGVG--FRVVHGGeishS 97
89**************99988733223331133455556666666666554111112333344444444444000445444444..677888833224 PP
TIGR02707 84 yvvnekmledlkkakrgehasnlGaiiakeladelniPafiv...dPvvvdeledvarisGlp......eierksifhalnqkavarklakelgkkye 172
++++++l ++++++ n aiia + ++l + +v d + + +v + +p rk fh + +++k ++ l+kk e
MMSYN1_0230 98 SIITDEILSKIQDSVKLAPLHNPAAIIAIKAVKKLMPNTNMVacfDTAFHQTMPEVNYLYTVPykwyeeFGVRKYGFHGISYEYIVNKSSEILNKKKE 195
578999999999999999999999***9887777653333332227777778888877766652211113358999********************** PP
TIGR02707 173 elnlivahlGGGisvaahkkGrvvdvnnaldG.eGPfsPersGtlPlvdlvelcysgkyt.leelkkkivGkgGlvayl.GtndvrevekkieaGdek 267
+lnliv+hlG G s++ +k G+ d +l G rsG + + + e + ++ t + +++ ++ ++Gl++ +d+r+v ++ ++ d+k
MMSYN1_0230 196 NLNLIVCHLGNGASISCIKDGKSYDTSMGLTPlAGLMMGTRSGDIDVS-ICEYIAKQTNTdIFTITQTLNKQSGLLGLSqVSADMRDVLEQYDKNDKK 292
*****************************9863788999****99764.3343333332213455566666666665431468*************** PP
TIGR02707 268 aklildamayqvakeiGkaavvlkGkvdaivltGGlayskelvse.ikekve 318
a ++++ + va i k a l ++da+v+t G+ + ++++ i +kv+
MMSYN1_0230 293 AVIAVEKYVQIVADFIVKYANYLD-SIDAVVFTAGIGENADVIRDlICKKVK 343
*********************997.7**************999862556666 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (393 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 242 (0.0539216); expected 89.8 (0.02)
Passed bias filter: 87 (0.019385); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 2687.45
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0230 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0233 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0233.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0233/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0233 [L=573]
Description: phosphoenolpyruvate-protein phosphotransferase 4=Probable Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.2e-223 739.5 15.5 5.9e-223 739.3 15.5 1.0 1 TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotran
8.8e-60 200.8 0.2 2.8e-38 129.7 0.0 2.7 3 TIGR01418 PEP_synth: phosphoenolpyruvate synthase
3.3e-42 142.4 1.1 5.3e-26 88.8 0.1 3.0 2 TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase
Domain annotation for each model (and alignments):
>> TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 739.3 15.5 3.9e-226 5.9e-223 1 565 [] 5 566 .. 5 566 .. 0.99
Alignments for each domain:
== domain 1 score: 739.3 bits; conditional E-value: 3.9e-226
TIGR01417 1 isGigvskGialgkalllkksdlrikrkklsaeeveseisrfskalkkakedLeelkkkalkklgqekasifeahllileDpelteeviekikkdrvn 98
i+Gi +s+Gi+l+kal++k+ +l+++ k +++v+++i+++++a+++++ dL++++k++l+klg+eka+if+ah i +Dp ++eev+++ik+++vn
MMSYN1_0233 5 IKGIAASDGISLAKALVIKEIKLDVQ--KQLIDDVDQQIAKLEQAINQTITDLKKIQKITLEKLGEEKAAIFDAHQDIANDPAIKEEVVQLIKTEKVN 100
79************************..8999****************************************************************** PP
TIGR01417 99 aefavkevleelaksleelddeylkerasDikDiskRlishllgvkisdlseikedvilvaedLtPsetaqlnkkyvkGFlteeGgktsHaailarsl 196
ae+a+ v+++ +++++l+d+y+ker +DikD+s R+ish+lg++i+dls+i+++vi++++dLtPs+taql+kk+vkGFlt++Gg+tsHaai+arsl
MMSYN1_0233 101 AEYALFIVSNNYFEMFSQLEDPYFKERSADIKDVSSRIISHILGLEIHDLSTIDKEVIIISDDLTPSQTAQLDKKFVKGFLTNVGGRTSHAAIMARSL 198
************************************************************************************************** PP
TIGR01417 197 eiPavvgtkaetsqvkngdtviidgekgevivnpsseeikkyeekkeavseekaelaklkdkdaktkdgtkvelaanigtvkdlesvereggegiGLf 294
eiPa+ g+k++t+ vk +d++ +dg +g+v ++ + ++ik+y++k ++++e k++l+k kdk++ tkd+ k + anig+ +d++sv g+egiGLf
MMSYN1_0233 199 EIPAILGLKNITELVKTDDLIALDGSSGIVELDLNDNDIKNYQTKVKQYLELKDQLKKFKDKPSLTKDKIKKLIEANIGSTNDIQSVLDSGAEGIGLF 296
************************************************************************************************** PP
TIGR01417 295 RtEFlymssdqlPteeeqfeaYkkvvekaesdvvvvRtlDiGgDkelpylqfpkeenPflgyRaiRlllekeeilrtqlrAilrAsayGklkvliPmv 392
RtEFlym++d++PteeeqfeaYkkvv ++ ++vv RtlDiGgDk+l y++f +e+nPflgyRaiR++l++++i+++q+rA+lrAsa+Gkl +++Pm+
MMSYN1_0233 297 RTEFLYMNNDHFPTEEEQFEAYKKVVSQID-HLVVFRTLDIGGDKKLSYFKFDEEMNPFLGYRAIRFTLDRKDIFKDQIRALLRASAFGKLGIMFPMI 393
**************************9875.699**************************************************************** PP
TIGR01417 393 ltveEikevkqlleeekqelkeegkaisenievGvmiEiPsaaliaeklakevdFfsiGtnDLiqYtlavdRenekvsnlyqplnPavlrliklviea 490
+t++E+k++k+++ee k el +e ++++++G+m+EiPsaa++a+++ak dFfsiGtnDLiqY++a dR+n++vs+lyqplnP++lrli+l i
MMSYN1_0233 394 ATIDEFKQAKAFVEECKLELDKENIKYDKQVQIGMMVEIPSAAILADQFAKYADFFSIGTNDLIQYSFASDRMNQNVSYLYQPLNPSLLRLIQLTISG 491
************************************************************************************************** PP
TIGR01417 491 akkegiwvgvCGElagDelaillllGlGlrelsmsassilkikmllkkltikeaeslaekvLkastkeevlklvn 565
a+k+++wvg+CGE+agD a+++llGl l+ +smsa+s+lk++ l++k+++ a++la+k+L+ +t+++v lv+
MMSYN1_0233 492 AHKHNKWVGMCGEMAGDSKALPILLGLDLDAFSMSATSVLKARSLMSKIESIKAKELANKALECQTSQQVNDLVE 566
**********************************************************************99986 PP
>> TIGR01418 PEP_synth: phosphoenolpyruvate synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.7 0.1 0.11 1.6e+02 354 375 .. 5 26 .. 4 96 .. 0.80
2 ! 68.4 0.0 6.7e-23 1e-19 373 515 .. 146 306 .. 128 345 .. 0.78
3 ! 129.7 0.0 1.9e-41 2.8e-38 590 783 .. 348 541 .. 325 542 .. 0.89
Alignments for each domain:
== domain 1 score: -1.7 bits; conditional E-value: 0.11
TIGR01418 354 vkGlavsskiasGkvkvildlk 375
+kG+a+s++i+ k+ vi+++k
MMSYN1_0233 5 IKGIAASDGISLAKALVIKEIK 26
5788888888888888888776 PP
== domain 2 score: 68.4 bits; conditional E-value: 6.7e-23
TIGR01418 373 dlkeldkleeGdilvtdmtdPDwePvm..kkasaivtdeGGrtshaaivarelGiPavvGtgdatkklkdgeevtvscaegdeGvvyeg......... 459
++++l+ +++ i+++d +P + k + +t+ GGrtshaai+ar l iPa+ G ++ t+ +k+++ ++++++ G+v +
MMSYN1_0233 146 EIHDLSTIDKEVIIISDDLTPSQTAQLdkKFVKGFLTNVGGRTSHAAIMARSLEIPAILGLKNITELVKTDDLIALDGSS---GIVELDlndndikny 240
5677888899999999999998887763245789********************************************99...999888677888866 PP
TIGR01418 460 ........kleeeve.......evelealpetatkilmnvgnPekaerfaelpadGvGLariefiisnvik 515
+l + + + ++ + + i n+g+ + ++++ + +a+G+GL+r ef+ +n +
MMSYN1_0233 241 qtkvkqylEL----KdqlkkfkDKPSLTKDKIKKLIEANIGSTNDIQSVLDSGAEGIGLFRTEFLYMN-ND 306
6665544422....144434322333344555666889**************************9887.34 PP
== domain 3 score: 129.7 bits; conditional E-value: 1.9e-41
TIGR01418 590 peeenPmlGfrGvsrylseeyeeafrlevkalkkvreemGltnvkvmiPfvrtveevkkvleileeeglkkgkngle......vyvmvevPsnvllad 681
ee nP lG+r ++ l++ ++ f+ ++al + + + +m+P++ t++e k++++ +ee l+ +k++++ + +mve+Ps+++lad
MMSYN1_0233 348 DEEMNPFLGYRAIRFTLDR--KDIFKDQIRALLRAS---AFGKLGIMFPMIATIDEFKQAKAFVEECKLELDKENIKydkqvqIGMMVEIPSAAILAD 440
4689*************99..***********9988...77789****************9999988888777654322222289************* PP
TIGR01418 682 efaklvDgfsiGsnDltqltLgvDrdselvaklfderneavlkliekaikaakekgkkvsiCGqapsdypelvefLveeGidsislnpDavlkvrlev 779
+fak+ D+fsiG+nDl q++ + Dr +++v++l++ n+++l+li+ +i a++++k v++CG + d +l L+ +d+ s+ +vlk r +
MMSYN1_0233 441 QFAKYADFFSIGTNDLIQYSFASDRMNQNVSYLYQPLNPSLLRLIQLTISGAHKHNKWVGMCGEMAGDSKAL-PILLGLDLDAFSMSATSVLKARSLM 537
****************************************************************99987776.6899999*************99988 PP
TIGR01418 780 aeve 783
++e
MMSYN1_0233 538 SKIE 541
8876 PP
>> TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 50.4 0.1 1.5e-17 2.2e-14 330 569 .. 73 310 .. 18 336 .. 0.65
2 ! 88.8 0.1 3.6e-29 5.3e-26 651 854 .. 349 531 .. 339 540 .. 0.86
Alignments for each domain:
== domain 1 score: 50.4 bits; conditional E-value: 1.5e-17
TIGR01828 330 llqtrtgkrtakaavriavdlveeglitkeeailrvepesldqllhprldesakkevlakglpasPGaavGkvvfsaeeavelaekgkkvilvreets 427
++ + + + a + v+l++ ++++ e a+ v+ + ++ ++ +l++ + ke+ a s + + e ++l+ +k+vi++ + +
MMSYN1_0233 73 IFDAHQDIANDPAIKEEVVQLIKTEKVNAEYALFIVSNNYFE--MFSQLEDPYFKERSADIKDVSSRIISHILG---LEIHDLSTIDKEVIIISDDLT 165
555555555555555555666666666666666666666555..455666665555555544444443333333...344556666799********* PP
TIGR01828 428 pedieGmav..aegiltarGGmtshaavvargmGkccvsGaeelkvdeekktlkigdkelkeGdiisidGstGevyl....Gevkliepevsedfe.. 517
p + + + +g+lt GG+tshaa++ar++ +++ G ++++ +k d+i++dGs+G v l ++k +++v++++e
MMSYN1_0233 166 PSQTAQLDKkfVKGFLTNVGGRTSHAAIMARSLEIPAILGLKNITE------------LVKTDDLIALDGSSGIVELdlndNDIKNYQTKVKQYLElk 251
**99998652279***************************999863............3455566666666665543111133444444444444444 PP
TIGR01828 518 ....elle....wadkvrklkvranadtpedakkalkfGaeGiGlcrtehmffdeerika 569
++ + dk++kl + an ++d++ l GaeGiGl rte +++++++ ++
MMSYN1_0233 252 dqlkKFKDkpslTKDKIKKL-IEANIGSTNDIQSVLDSGAEGIGLFRTEFLYMNNDHFPT 310
42223322111123555555.899999***************************998775 PP
== domain 2 score: 88.8 bits; conditional E-value: 3.6e-29
TIGR01828 651 eevnPmlGhrGvrlgvtyPeiyemqvraileaavevkkegievkpeimiPlvaekeelkilkeeveevaeeveeek.gvkleyeiGtmieipraalta 747
ee+nP lG+r +r+++ +i++ q+ra+l+a k im P++a+ +e+k+ k+ vee e+ +e+ +++ + +iG m+eip aa+ a
MMSYN1_0233 349 EEMNPFLGYRAIRFTLDRKDIFKDQIRALLRASAF-------GKLGIMFPMIATIDEFKQAKAFVEECKLELDKENiKYDKQVQIGMMVEIPSAAILA 439
69****************************99876.......5789************************9988763677899*************** PP
TIGR01828 748 dkiaeeadffsfGtndltqmtfgfsrddae.kflekylekkilekdPfesldqeGvGelirlavekgrktrpnlkvGiCGehgGdPesieflhkigld 844
d+ a++adffs Gtndl q f+ r + + ++l + l+ + +li+l++ ++k n vG+CGe +Gd +++ l ++ld
MMSYN1_0233 440 DQFAKYADFFSIGTNDLIQYSFASDRMNQNvSYLYQPLNP--------------SLLRLIQLTISGAHKH--NKWVGMCGEMAGDSKALPILLGLDLD 521
*******************888877766554444433333..............34589***99988765..5579*********************9 PP
TIGR01828 845 yvscspyrvP 854
s s+ v
MMSYN1_0233 522 AFSMSATSVL 531
9999987665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (573 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 357 (0.0795455); expected 89.8 (0.02)
Passed bias filter: 121 (0.0269608); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.24
# Mc/sec: 3428.55
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0233 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0234 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0234.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0234/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0234 [L=154]
Description: glucose-specific phosphotransferase enzyme IIA component 4=Probable Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.2e-47 156.0 0.2 1.3e-46 155.5 0.2 1.2 1 TIGR00830 PTBA: PTS system, glucose subfamily, IIA component
1e-42 144.4 1.8 1.2e-42 144.2 1.8 1.0 1 TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specif
Domain annotation for each model (and alignments):
>> TIGR00830 PTBA: PTS system, glucose subfamily, IIA component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 155.5 0.2 5.9e-50 1.3e-46 1 121 [] 10 130 .. 10 130 .. 0.99
Alignments for each domain:
== domain 1 score: 155.5 bits; conditional E-value: 5.9e-50
TIGR00830 1 ilspvsGelvsleeVpdevfaeklvGdGiAikPsdgkvvaPvdgkvekifktkHalglesdeGveiliHiGidTvklngegFkskveegekvkkgdkl 98
+l+p++G++++l+eV+d+vf e+++GdG+Ai P++++++aPv+gk+ ++f+tkHa+g+++++Gveil+HiG+dTv+l+g+gF+s+v ++++v++gdkl
MMSYN1_0234 10 VLAPCDGKIITLDEVEDDVFRERMLGDGFAIYPTSNDFHAPVSGKLVTAFPTKHAFGIQTKNGVEILLHIGLDTVSLDGNGFESYVIQDQEVNAGDKL 107
589*********************************************************************************************** PP
TIGR00830 99 vefdlkalkkkakdlttlvvvtn 121
v++dl+ ++kk ++++++++tn
MMSYN1_0234 108 VTVDLQEVSKKVPSIKSPIIFTN 130
*********************98 PP
>> TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 144.2 1.8 5.3e-46 1.2e-42 472 616 .. 9 152 .. 4 154 .] 0.95
Alignments for each domain:
== domain 1 score: 144.2 bits; conditional E-value: 5.3e-46
TIGR01995 472 elkapvaGevlslaevkDevFssgllGkGvailPsegevvaPvdGevtavfetkHAiglksdngveiliHvGiDTVelkGeyFeilvekgdkvkaGql 569
++ ap G++++l ev+D+vF +lG+G+ai P++ aPv G++++ f+tkHA+g++++ngveil+H+G+DTV l+G++Fe+ v + ++v+aG++
MMSYN1_0234 9 KVLAPCDGKIITLDEVEDDVFRERMLGDGFAIYPTSNDFHAPVSGKLVTAFPTKHAFGIQTKNGVEILLHIGLDTVSLDGNGFESYVIQDQEVNAGDK 106
689*********************************************************************************************** PP
TIGR01995 570 LlkvdldkikeaGydvttlvvvtNskdlldvivedkeevtkedklle 616
L++vdl++++++ +++++++ tN + +++ +++ ev+k+d++
MMSYN1_0234 107 LVTVDLQEVSKKVPSIKSPIIFTN-NGGKTLEIVKMGEVKKGDVVAI 152
************************.6677888888889999998865 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (154 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 154 (0.0343137); expected 89.8 (0.02)
Passed bias filter: 100 (0.0222816); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1105.75
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0234 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0235 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0235.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0235/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0235 [L=96]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.043 11.5 16.4 0.046 11.4 16.4 1.1 1 TIGR01218 Gpos_tandem_5TM: tandem five-TM protein
0.049 11.1 4.7 0.056 11.0 4.7 1.1 1 TIGR02866 CoxB: cytochrome c oxidase, subunit II
5.1 4.9 12.3 1 7.2 0.4 2.1 2 TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
5.2 3.8 9.2 3.2 4.5 0.7 2.0 2 TIGR03503 TIGR03503: TIGR03503 family protein
Domain annotation for each model (and alignments):
>> TIGR01218 Gpos_tandem_5TM: tandem five-TM protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.4 16.4 4.1e-05 0.046 87 172 .. 8 91 .. 1 96 [] 0.61
Alignments for each domain:
== domain 1 score: 11.4 bits; conditional E-value: 4.1e-05
TIGR01218 87 dyfdislsilikiilflisillvlllrliiskkskkklynrlgnnkkkekiiirpksfkklifilflyifflglsillfylfitng 172
++ +s+ + ii++l+sill++ll+l i +k kl+++ ++ + +i ++k+ +k ++i f+ i++ ++ ++l ++f+ g
MMSYN1_0235 8 TILNNEISKSWAIIFILVSILLAILLILAIFIIKKIKLKQQ--HEQARSFYINTTKKSDKKFWINFTIICCYLVGVVLSVTFLIIG 91
55666677777778888888888888877777778888887..4455555555555555555555555555555566666665555 PP
>> TIGR02866 CoxB: cytochrome c oxidase, subunit II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.0 4.7 5e-05 0.056 7 74 .. 12 85 .. 7 95 .. 0.61
Alignments for each domain:
== domain 1 score: 11.0 bits; conditional E-value: 5e-05
TIGR02866 7 eeiaklyll.llava.vliallvaalliyvvfkfrkksdee.....kpskisenrkleivwtvipviivvgliaa 74
+ei k++ + +++v+ +l++ll+ a++i k +++ +++ +++k ++++k i +t+i +v +++ +
MMSYN1_0235 12 NEISKSWAIiFILVSiLLAILLILAIFIIKKIKLKQQHEQArsfyiNTTK-KSDKKFWINFTIICCYLVGVVLSV 85
66777775413444414566788999999999999977776667643333.456667777777774444444333 PP
>> TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.5 6.8 0.026 29 121 150 .. 15 44 .. 8 47 .. 0.61
2 ? 7.2 0.4 0.00092 1 98 144 .. 44 90 .. 41 95 .. 0.82
Alignments for each domain:
== domain 1 score: 2.5 bits; conditional E-value: 0.026
TIGR03927 121 ktssilllvliaglillliagiyflirkvk 150
++s++++ +l+ l+ +l + +f+i+k+k
MMSYN1_0235 15 SKSWAIIFILVSILLAILLILAIFIIKKIK 44
556666666666666666666666666654 PP
== domain 2 score: 7.2 bits; conditional E-value: 0.00092
TIGR03927 98 qLFsseyeqtssssesteeeetektssilllvliaglillliagiyf 144
+L ++ +++s+ +t++++++ ++ ++++ + + ++l + ++++
MMSYN1_0235 44 KLKQQHEQARSFYINTTKKSDKKFWINFTIICCYLVGVVLSVTFLII 90
777788888888888888999999************99998888776 PP
>> TIGR03503 TIGR03503: TIGR03503 family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.2 5.1 0.0075 8.4 342 373 .. 12 44 .. 3 45 .. 0.69
2 ? 4.5 0.7 0.0029 3.2 325 364 .. 42 90 .. 39 96 .] 0.52
Alignments for each domain:
== domain 1 score: 3.2 bits; conditional E-value: 0.0075
TIGR03503 342 akkekel.iiiivgnlvllllvlvglivlrkkk 373
++ +k + ii+i++ ++l +l+++ +++++k+k
MMSYN1_0235 12 NEISKSWaIIFILVSILLAILLILAIFIIKKIK 44
455666756667777777777888888888887 PP
== domain 2 score: 4.5 bits; conditional E-value: 0.0029
TIGR03503 325 aakvkeeqekali...eereakkekel....iiiivgnlvllll....vlv 364
+ k+k+++e+a+ +++++ ++k++ i i lv ++l +++
MMSYN1_0235 42 KIKLKQQHEQARSfyiNTTKKSDKKFWinftI--ICCYLVGVVLsvtfLII 90
45666766666655568999999999977531..22222222221122333 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (96 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 566 (0.126114); expected 89.8 (0.02)
Passed bias filter: 165 (0.0367647); expected 89.8 (0.02)
Passed Vit filter: 20 (0.00445633); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 656.48
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0235 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0238 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0238.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0238/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0238 [L=208]
Description: rpsD_bact: ribosomal protein S4 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-76 253.5 2.7 3.5e-76 253.4 2.7 1.0 1 TIGR01017 rpsD_bact: ribosomal protein uS4
5.2e-14 50.5 0.1 8.7e-14 49.7 0.1 1.4 1 TIGR01018 uS4_arch: ribosomal protein uS4
6.6e-07 26.8 0.2 1.4e-06 25.8 0.2 1.6 1 TIGR00478 tly: TlyA family rRNA methyltransferase/putative h
0.00026 18.2 0.0 0.00058 17.0 0.0 1.6 1 TIGR03069 PS_II_S4: photosystem II S4 domain protein
0.0043 14.3 0.0 0.0067 13.7 0.0 1.3 1 TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
Domain annotation for each model (and alignments):
>> TIGR01017 rpsD_bact: ribosomal protein uS4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 253.4 2.7 3.9e-79 3.5e-76 1 200 [] 3 204 .. 3 204 .. 0.95
Alignments for each domain:
== domain 1 score: 253.4 bits; conditional E-value: 3.9e-79
TIGR01017 1 rylgpklklsRrlgvsllgkskklllkrk..yppgqhgk..rkkklsdYglqLqekqklkllYGitekqlrklfkeakklkgntgenllellesRLDn 94
r++g+++k sRr+g+s+l++ k++++ +k ++pgqhgk +k k s+Yg+qLqekqk+k++YG++e+q+r++f++akk++g g n+l llesRLDn
MMSYN1_0238 3 RFIGSTFKKSRRFGFSILETGKEFSKGKKriTTPGQHGKerAKVKVSEYGQQLQEKQKVKFMYGLSERQFRNTFAKAKKMQGILGTNFLVLLESRLDN 100
7899*****************99995444459*******7677899**************************************************** PP
TIGR01017 95 vvyrlgfaktraaArQLvsHghilvngkkvdipsyqvkpgdlisikekskklklvkealelkeersipsylevdkkklkgkvlrvpereelpleines 192
+vyrlgf++tr+ ArQLv+Hghilvngkkvdipsy+++ gdl+++k++ kk+++v eal++ ++ + ++++v+k+++kg+++r+per+el+ ei es
MMSYN1_0238 101 IVYRLGFSATRQGARQLVNHGHILVNGKKVDIPSYLLSVGDLVEVKASMKKNEKVLEALQN--NEATLEFVKVNKNEVKGEFVRLPERTELSSEISES 196
************************************************************7..55889****************************** PP
TIGR01017 193 lvvEyysk 200
l+vE+y++
MMSYN1_0238 197 LIVEWYNR 204
******87 PP
>> TIGR01018 uS4_arch: ribosomal protein uS4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.7 0.1 9.7e-17 8.7e-14 87 148 .. 79 140 .. 41 153 .. 0.88
Alignments for each domain:
== domain 1 score: 49.7 bits; conditional E-value: 9.7e-17
TIGR01018 87 naklddvlslkvedvlerrlqtlvykkGlaktikqarqlivhghiavdgrvvtsPsylvkke 148
k++ +l+ + +le rl +vy+ G++ t + arql+ hghi v+g++v++Psyl++++
MMSYN1_0238 79 AKKMQGILGTNFLVLLESRLDNIVYRLGFSATRQGARQLVNHGHILVNGKKVDIPSYLLSVG 140
56889999999999********************************************9865 PP
>> TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.8 0.2 1.5e-09 1.4e-06 1 54 [. 97 150 .. 97 179 .. 0.87
Alignments for each domain:
== domain 1 score: 25.8 bits; conditional E-value: 1.5e-09
TIGR00478 1 rLdvlLvkrglvesRekakrlilkgevlvnkkkvdkPsalvdkdakielvqeel 54
rLd++ + g+ +R+ a++l+ g++lvn+kkvd Ps l+ + +e+++
MMSYN1_0238 97 RLDNIVYRLGFSATRQGARQLVNHGHILVNGKKVDIPSYLLSVGDLVEVKASMK 150
8*****************************************999999987655 PP
>> TIGR03069 PS_II_S4: photosystem II S4 domain protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.0 0.0 6.4e-07 0.00058 184 233 .. 96 146 .. 80 162 .. 0.89
Alignments for each domain:
== domain 1 score: 17.0 bits; conditional E-value: 6.4e-07
TIGR03069 184 lRiDAia.sAGFglsRskiveqikegelrlnwktvtkaskelkvGDrlqle 233
R+D i GF R+ + +++g++ +n+k+v+ +s l vGD+++++
MMSYN1_0238 96 SRLDNIVyRLGFSATRQGARQLVNHGHILVNGKKVDIPSYLLSVGDLVEVK 146
5888876257**************************************987 PP
>> TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.7 0.0 7.5e-06 0.0067 5 69 .. 95 158 .. 92 170 .. 0.86
Alignments for each domain:
== domain 1 score: 13.7 bits; conditional E-value: 7.5e-06
TIGR00005 5 gqrldevlaselkdlsrskikklieegqVkvnkkkvtanlklkikdgdlvtveveeeeeaevpve 69
+ rld+++ ++ + r+ + +l+++g++ vn +k+++ +++ + gdlv+v+ + +++++v
MMSYN1_0238 95 ESRLDNIVYRLGFSATRQGARQLVNHGHILVN-GKKVDIPSYLLSVGDLVEVKASMKKNEKVLEA 158
579999999988889*****************.7999999************9999877777654 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (208 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 272 (0.0606061); expected 89.8 (0.02)
Passed bias filter: 149 (0.0331996); expected 89.8 (0.02)
Passed Vit filter: 16 (0.00356506); expected 4.5 (0.001)
Passed Fwd filter: 5 (0.00111408); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1493.48
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0238 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0239 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0239.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0239/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0239 [L=595]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (595 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 540 (0.120321); expected 89.8 (0.02)
Passed bias filter: 53 (0.0118093); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 4068.79
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0239 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0240 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0240.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0240/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0240 [L=395]
Description: thiI 4=Probable tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-111 369.9 8.5 4e-111 369.6 8.5 1.0 1 TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI
2.9e-05 21.7 0.2 0.00077 17.0 0.2 2.6 1 TIGR00364 TIGR00364: queuosine biosynthesis protein QueC
------ inclusion threshold ------
0.013 13.4 1.8 0.094 10.6 0.1 2.9 2 TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
Domain annotation for each model (and alignments):
>> TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 369.6 8.5 2.7e-114 4e-111 1 368 [. 4 371 .. 4 377 .. 0.94
Alignments for each domain:
== domain 1 score: 369.6 bits; conditional E-value: 2.7e-114
TIGR00342 1 ilvrygEiaiKgkvRkrfekkLkknikkalkkleitkevkyefdklvvieiekeqrealkdllkkipGissfsllvkaeleldeikklkkalkelrke 98
il+rygE+++Kg++R +f+ kL++nik lk+++++ ++ + ++ ei+ e + ++ ++lk ++Gi s s++ + +l++i +k l+ +++
MMSYN1_0240 4 ILIRYGELTLKGNNRFQFIDKLISNIKFKLKQFDKEDIKFIKDHNSLTLEIKDELETQIVEQLKTVFGIYSISIINYVNKDLEQI--KKTVLQIAKNS 99
89******************************998776666666679999***************************99999999..44444433333 PP
TIGR00342 99 .kktFkvevkRrdkdFalnsvevnkkvgeklvekie.lkvdlenPditvhiEiledelliikeryeGiGGLPvgsqgkvlaLlSgGiDSpVaaflvmk 194
+ktFk+ev+R+dk+F+ +s+e+++ ++++++++++ l vd++nP+++++i +++d++ ++ +r++G GLPvg ++k l+LlSgGiDSpV+afl +k
MMSYN1_0240 100 kTKTFKLEVSRKDKSFNYTSIELKQILATEILKNTNhLSVDVHNPELVIEIVVKKDHVDVFDNRIDGLKGLPVGISDKGLCLLSGGIDSPVSAFLTLK 197
489*********************************9************************************************************* PP
TIGR00342 195 RGcrvvavhfknepaasekakekveklaekslaelevsvklvvvdfeevqeeikkkikekytivllkrlmlkiAekvaekegakalvtGesLgQVaSQ 292
RG++v+++hf + p +s +a +kv +la+k + ++kl++ df+ +++e+++ i+++y+i++++r++l+iA+ +a++++ ka++tGesLgQVaSQ
MMSYN1_0240 198 RGMQVDFIHFMTPPHTSYQALDKVFNLAKKIAKYNLSNFKLHICDFNLLLQELQHLIDPSYKITIMRRMFLRIANIIAKNNNNKAIITGESLGQVASQ 295
*****************************966667789************************************************************ PP
TIGR00342 293 TlenlkviqavvntpilrPLIgldKeeIielakeigTyeisiekeedcctvfkakkPttkakleevekleeklkll 368
T+++++vi++v++ pilrP I++dKeeIi++ak i+Tye+si ++ d c++f++k+P k kl +klee++ +
MMSYN1_0240 296 TIQSINVINNVSDLPILRPVITYDKEEIIKIAKFIDTYETSILPFDDVCSMFVPKDPIIKPKLDIATKLEENIYWK 371
**********************************************************************998754 PP
>> TIGR00364 TIGR00364: queuosine biosynthesis protein QueC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.0 0.2 5.2e-07 0.00077 3 172 .. 180 331 .. 178 347 .. 0.74
Alignments for each domain:
== domain 1 score: 17.0 bits; conditional E-value: 5.2e-07
TIGR00364 3 vvlSGGlDSttvllialkegeeveavtFdYgqr.hskElevAkkiaealgiketvidlsllkelgksaLtkeeeeleqkeeeedelpktfVpgRNlvf 99
++lSGG+DS + +++ lk+g +v + F + + l++ ++a+++ + + l+ + L++e ++l + + + ++++ +f
MMSYN1_0240 180 CLLSGGIDSPVSAFLTLKRGMQVDFIHFMTPPHtSYQALDKVFNLAKKI--AKYNLSNFKLHICDFNLLLQELQHLIDPSYKITIMRR--------MF 267
68**************************887664556666666666653..3333333344555557888888888877766444443........68 PP
TIGR00364 100 lslaasyAealgaeavilgvneedfsgyPDcreefvkalnkalelgtkkkvkieaPlieltKaeivklakelg 172
l +a + A++ + +a+i+g + ++ ++ ++++n++ +++ ++ i P+i+ +K+ei+k+ak ++
MMSYN1_0240 268 LRIANIIAKNNNNKAIITGESLGQVA------SQTIQSINVINNVS---DLPILRPVITYDKEEIIKIAKFID 331
89999999999999999998877654......56788888776664...778899999999999999998665 PP
>> TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.3 0.1 0.27 4.1e+02 111 156 .. 56 100 .. 53 114 .. 0.51
2 ? 10.6 0.1 6.3e-05 0.094 127 161 .. 295 328 .. 179 333 .. 0.92
Alignments for each domain:
== domain 1 score: -1.3 bits; conditional E-value: 0.27
TIGR02432 111 DqiEtillrllrgsglkglsglkeirele.kkiqivRPLlkiskkei 156
D +Et +++ l+ g+ +++ i+ ++ + qi + +l+i k+
MMSYN1_0240 56 DELETQIVEQLKTV--FGIYSISIINYVNkDLEQIKKTVLQIAKNSK 100
66666665555443..3333333333333234555555666665544 PP
== domain 2 score: 10.6 bits; conditional E-value: 6.3e-05
TIGR02432 127 kglsglkeirelekkiqivRPLlkiskkeieeylk 161
+ +++++ i+++ ++ i+RP+++++k+ei++++k
MMSYN1_0240 295 QTIQSINVINNV-SDLPILRPVITYDKEEIIKIAK 328
556677788888.699****************997 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (395 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 367 (0.0817736); expected 89.8 (0.02)
Passed bias filter: 98 (0.021836); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 2836.18
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0240 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0247 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0247.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0247/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0247 [L=196]
Description: GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC, bsub homolog is essential 5=Equivalog Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4e-67 223.5 1.3 4.5e-67 223.3 1.3 1.0 1 TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding prote
7.7e-22 75.8 0.4 9.6e-22 75.5 0.4 1.0 1 TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
5e-13 47.0 2.2 3.1e-12 44.4 1.4 2.0 1 TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding prote
6.5e-13 46.2 0.1 7.7e-13 46.0 0.1 1.1 1 TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation
1.1e-12 45.9 0.8 1.3e-12 45.6 0.8 1.1 1 TIGR00436 era: GTP-binding protein Era
7.3e-12 43.3 0.8 1e-11 42.8 0.8 1.2 1 TIGR00231 small_GTP: small GTP-binding protein domain
2.7e-09 34.6 2.0 3.2e-09 34.3 2.0 1.1 1 TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
6.9e-09 33.3 0.4 6.9e-09 33.3 0.4 2.0 2 TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
4.9e-07 27.0 0.1 6.8e-07 26.6 0.1 1.1 1 TIGR02729 Obg_CgtA: Obg family GTPase CgtA
2.1e-06 24.7 0.1 3.1e-06 24.1 0.1 1.3 1 TIGR00437 feoB: ferrous iron transport protein B
5.4e-05 20.8 0.8 0.00015 19.4 0.0 1.8 2 TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase
0.00051 17.0 1.1 0.0022 14.9 0.1 1.9 2 TIGR03156 GTP_HflX: GTP-binding protein HflX
0.0008 15.6 0.0 0.00096 15.4 0.0 1.1 1 TIGR00993 3a0901s04IAP86: chloroplast protein import compone
0.005 13.9 0.3 0.028 11.5 0.0 1.9 2 TIGR00092 TIGR00092: GTP-binding protein YchF
Domain annotation for each model (and alignments):
>> TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 223.3 1.3 1.4e-69 4.5e-67 1 185 [. 5 189 .. 5 190 .. 0.97
Alignments for each domain:
== domain 1 score: 223.3 bits; conditional E-value: 1.4e-69
TIGR03598 1 aeflksaaklkqlpedklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevne.elrlvDlPGYGyakvskeekekwqklieeYLek 97
a+f++saa+ +++++d+++ei+++GrSNvGKSs+iN+Ltn++kla++S+tPG+T+l+nffe+n+ e+rlvD PGYGyakv+++ k +++k++eeY+ +
MMSYN1_0247 5 ASFITSAANKSNWINDDVSEICLIGRSNVGKSSFINSLTNNNKLAKISNTPGKTRLLNFFEINKgEYRLVDAPGYGYAKVDDNLKIQFAKMMEEYFIN 102
58************************************************************99899******************************* PP
TIGR03598 98 renLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelkael 185
r+nLkgv+ll+D+rh+++++D +++++lk+++ipv+++ tK+Dklkkse+ k+ k++k++++ +e+ +++ +S+l+k++i ++ + +
MMSYN1_0247 103 RKNLKGVFLLLDLRHKPSNDDIMMYQFLKHYNIPVVIIGTKLDKLKKSEYIKNEKMIKETINFYQED-DFIKISNLDKTNIIKCYELI 189
****************************************************************887.9***********99887766 PP
>> TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.5 0.4 3e-24 9.6e-22 172 345 .. 19 192 .. 2 195 .. 0.87
Alignments for each domain:
== domain 1 score: 75.5 bits; conditional E-value: 3e-24
TIGR03594 172 eeepikiaiiGrpNvGKStLvNallgeervi.vsdiaGtTrDsidievevkgkkylliDTAGirrkkkveekve.klsvlrtlkaieradv..vllvl 265
+++ +i++iGr NvGKS+++N+l++++++ +s+++G Tr +e+++ +y+l+D G +kv++++ +++ + i+r ++ v+l+l
MMSYN1_0247 19 NDDVSEICLIGRSNVGKSSFINSLTNNNKLAkISNTPGKTR--LLNFFEINKGEYRLVDAPGYGY-AKVDDNLKiQFAKMMEEYFINRKNLkgVFLLL 113
345679*********************997659*******9..67899**************975.56666665367777778889999887799*** PP
TIGR03594 266 DategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikev 345
D +++ s+ D + +++++ + ++vi+ K D++ +++e+ + +k ++e+++f + +++ iS l+++++ k +e i+++
MMSYN1_0247 114 DLRHKPSNDDIMMYQFLKHYNIPVVIIGTKLDKL-KKSEYIKNEKMIKETINFYQEDDFIKISNLDKTNIIKCYELIDKL 192
**********************************.88999999*******************************999986 PP
>> TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.4 1.4 9.6e-15 3.1e-12 108 272 .. 12 173 .. 1 176 [. 0.68
Alignments for each domain:
== domain 1 score: 44.4 bits; conditional E-value: 9.6e-15
TIGR03596 108 klkakglkkkairalvvGiPNvGKStliNrlakk.kvakvgnkpgvTksqqwiklsk.eleLlDtPGilwpkledeevglkLaltgaikdeildkeev 203
++k+ ++ +++ +G NvGKS++iN+l+++ k ak n+pg T+ + ++++k e+ L+D+PG + k++d+ lk+ + +++++ ++ +++
MMSYN1_0247 12 ANKSNWINDDVSEICLIGRSNVGKSSFINSLTNNnKLAKISNTPGKTRLLNFFEINKgEYRLVDAPGYGYAKVDDN---LKIQFAKMMEEYFINRKNL 106
4556677778889999***************9762679*****************99789***********99985...7788888888888888877 PP
TIGR03596 204 alfllel.lkek.ypeelkerykleeeeeeeeelleeiakkrglllkggeldleraaeillkelrkgklgk 272
+l l l++k +++ ++ +y++ ++ + + i+ k + l+k++ + e++++ ++ ++++ + k
MMSYN1_0247 107 KGVFLLLdLRHKpSNDDIM-MYQFLKHYN---IPVVIIGTKLDKLKKSEYIKNEKMIKETINFYQEDDFIK 173
5443333032221222332.233333222...233445555556666677777777777777766666655 PP
>> TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.0 0.1 2.4e-15 7.7e-13 9 165 .. 24 191 .. 18 196 .] 0.77
Alignments for each domain:
== domain 1 score: 46.0 bits; conditional E-value: 2.4e-15
TIGR03918 9 hialfGrrNaGKSsliNaltgq.dvaivsdvpGtTtDpvekamEllplGpvvliDTaG.....ldDegeLGelRvektrevlektdl..allvvdaea 98
+i l+Gr N+GKSs+iN lt++ ++a +s++pG T +E+ + G l+D +G +dD+ ++ ++ +++ +l + l++d ++
MMSYN1_0247 24 EICLIGRSNVGKSSFINSLTNNnKLAKISNTPGKTR--LLNFFEINK-GEYRLVDAPGygyakVDDNLKIQFAKMMEEY-FINRKNLkgVFLLLDLRH 117
799****************986268*********95..788999976.*********9666556887777766655544.445544433788999999 PP
TIGR03918 99 eleeleeelleelkekkipvivvlnkidlkeeeke.......keklekkkeeevvlvsakekegieelkealie 165
++++ + +++ lk+ +ipv+++ +k d+ ++++ ke+++ +e++++++s+ +k++i + e + +
MMSYN1_0247 118 KPSNDDIMMYQFLKHYNIPVVIIGTKLDKLKKSEYiknekmiKETINFYQEDDFIKISNLDKTNIIKCYELIDK 191
****************************9988755433233344444556677888888888888777776655 PP
>> TIGR00436 era: GTP-binding protein Era
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.6 0.8 4.1e-15 1.3e-12 3 157 .. 25 187 .. 23 195 .. 0.76
Alignments for each domain:
== domain 1 score: 45.6 bits; conditional E-value: 4.1e-15
TIGR00436 3 vailGrpnvGKSTLlNkllgq.kisivSpkaqTTrnrisgiltegasqiifiDtPGlhekkhkln.....ellvkeirkalsevdlilfvvdsdeknk 94
+ ++Gr+nvGKS ++N+l+++ k + +S+ + Tr+ ++ +g++ ++D PG k + n ++ e +++ + +++d +k
MMSYN1_0247 25 ICLIGRSNVGKSSFINSLTNNnKLAKISNTPGKTRLLNFFEINKGEY--RLVDAPGYGYAKVDDNlkiqfAKMMEEYFINRKNLKGVFLLLDLRHKPS 120
789***************98615677999999998765555555555..589****987664332111112344444334456666788889999998 PP
TIGR00436 95 e.dellleklqklkapvvlalnkldnkekdkllelidkeasllefk...eiveisalkgenveelka 157
+ d ++ + l++ ++pvv++ kld+ +k + +++++ + +++f + ++is l ++n+ + +
MMSYN1_0247 121 NdDIMMYQFLKHYNIPVVIIGTKLDKLKKSEYIKNEKMIKETINFYqedDFIKISNLDKTNIIKCYE 187
868899999******************99999999999999999877789******99999876655 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.8 0.8 3.2e-14 1e-11 5 163 .. 24 190 .. 21 191 .. 0.75
Alignments for each domain:
== domain 1 score: 42.8 bits; conditional E-value: 3.2e-14
TIGR00231 5 kivivGhvdvGKstLlnsllkn.kisiteskpgvtrdyvteqieedGktykvnllDTaG.....qedfdairrlyvreversl..evvdivilvldve 94
i ++G+++vGKs+ +nsl+ n k ++ + +pg tr ++ +e++ + l+D +G +d +i+ + + + e ++ + + +v+l+ld++
MMSYN1_0247 24 EICLIGRSNVGKSSFINSLTNNnKLAKISNTPGKTRLLNF--FEINK--GEYRLVDAPGygyakVDDNLKIQFAKM-MEEYFInrKNLKGVFLLLDLR 116
5899***************986256677777788887777..66665..4689*******9753222223333332.2233442257899******** PP
TIGR00231 95 eglekqtkeiiheakkkgvpiilvvnKiDlkd.....dlktkvkslfaklnaep.iielsaetgknidklfklve 163
++ +++ + +k +++p+++ ++K D+ + + +k ++ + ++e+ +i++s + +ni k ++l+
MMSYN1_0247 117 HKPSNDDIMMYQFLKHYNIPVVIIGTKLDKLKkseyiKN-EKMIKETINFYQEDdFIKISNLDKTNIIKCYELID 190
*****************************9988876433.344444444455555**************999875 PP
>> TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.3 2.0 1e-11 3.2e-09 208 346 .. 21 164 .. 3 192 .. 0.74
Alignments for each domain:
== domain 1 score: 34.3 bits; conditional E-value: 1e-11
TIGR00450 208 dglklaivGktNvGKSSLlNallkkdr.aiVsdikGttRDvvEedleleGilvkllDtAGi..ReaadkvEklGiekslka..ikeadl..vlyvlDa 298
d + ++G+ NvGKSS +N l ++++ a +s+ +G tR + +e++ +l+D G + +d++ k+ k ++ i++ +l v ++lD+
MMSYN1_0247 21 DVSEICLIGRSNVGKSSFINSLTNNNKlAKISNTPGKTRL--LNFFEINKGEYRLVDAPGYgyAKVDDNL-KIQFAKMMEEyfINRKNLkgVFLLLDL 115
44579******************9998789*********5..589************9986214556665.56655655432255555555******* PP
TIGR00450 299 skpltkdd.eliitlkkkkkdlllvlNKiDLaeleilkselkltvslls 346
++ +dd + ++lk+ + +++++ K D +++++ ++ k+ +++
MMSYN1_0247 116 RHKPSNDDiMMYQFLKHYNIPVVIIGTKLDKLKKSEYIKNEKMIKETIN 164
998888885677889999***********96655444444444444444 PP
>> TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.3 0.4 2.2e-11 6.9e-09 156 216 .. 23 80 .. 4 114 .. 0.76
2 ? -0.0 2.5 0.28 90 85 119 .. 126 165 .. 81 194 .. 0.52
Alignments for each domain:
== domain 1 score: 33.3 bits; conditional E-value: 2.2e-11
TIGR03597 156 kdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTT..ldlieipldkesvllDtpGii 216
+++ ++G +NVGKSs+iN+l ++nk k +S+ pg T l++ ei+ e l+D+pG+
MMSYN1_0247 23 SEICLIGRSNVGKSSFINSLTNNNKLAK----ISNTPGKTrlLNFFEINK-GEYRLVDAPGYG 80
37889***************97666444....699999886678888887.7778******85 PP
== domain 2 score: -0.0 bits; conditional E-value: 0.28
TIGR03597 85 lkrfvken..kvllvvNKidllpks...vklekikewlkk 119
+ +f+k++ +v++++ K+d l ks ++++ ike ++
MMSYN1_0247 126 MYQFLKHYniPVVIIGTKLDKLKKSeyiKNEKMIKETINF 165
4555554412678889999999887222234444444443 PP
>> TIGR02729 Obg_CgtA: Obg family GTPase CgtA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.6 0.1 2.1e-09 6.8e-07 157 324 .. 22 189 .. 19 194 .. 0.76
Alignments for each domain:
== domain 1 score: 26.6 bits; conditional E-value: 2.1e-09
TIGR02729 157 ladvglvGlpnaGkStllsavsaak..pkiadYpFtTlvPnLGvveveeeksfvlaDiPgliegasegagLGleFLkHie.....rt..rvllhlidl 245
++++ l+G +n+GkS++++++++ + +ki++ p T L e+++ ++ l+D Pg a+ +L ++F k +e r + + l+dl
MMSYN1_0247 22 VSEICLIGRSNVGKSSFINSLTNNNklAKISNTPGKTRL--LNFFEINK-GEYRLVDAPGY-GYAKVDDNLKIQFAKMMEeyfinRKnlKGVFLLLDL 115
6899*****************987523567776666654..55667776.7899******7.6788889*******9876222224311446777888 PP
TIGR02729 246 seedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeel....ekkvlaisaltkegleellkkl 324
+++ p +d ++ + Lk+y+ p +++ +k+d l+++e + k +ke++ e+++++is l+k+++ + ++ +
MMSYN1_0247 116 RHK----PSNDDIMMYQFLKHYNI-----PVVIIGTKLDKLKKSEYIKNEKMIKETInfyqEDDFIKISNLDKTNIIKCYELI 189
777....66666677788999987.....8999********99888877777777766677899*******999988776655 PP
>> TIGR00437 feoB: ferrous iron transport protein B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.1 0.1 9.6e-09 3.1e-06 1 51 [. 29 79 .. 29 104 .. 0.87
Alignments for each domain:
== domain 1 score: 24.1 bits; conditional E-value: 9.6e-09
TIGR00437 1 GnpNvGKstlfnaLtgsn..qkvgNwpGvTVekkegklelkgedieivDlPGi 51
G NvGKs+++n Lt++n +k++N pG+T + +e++ + ++vD PG
MMSYN1_0247 29 GRSNVGKSSFINSLTNNNklAKISNTPGKT--RLLNFFEINKGEYRLVDAPGY 79
889************9884469********..7778888999999******94 PP
>> TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.4 0.0 4.6e-07 0.00015 126 198 .. 26 94 .. 6 110 .. 0.76
2 ? -0.1 0.2 0.41 1.3e+02 68 100 .. 133 165 .. 104 193 .. 0.60
Alignments for each domain:
== domain 1 score: 19.4 bits; conditional E-value: 4.6e-07
TIGR00157 126 vfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhlqgG..liiDtPGfneldlenleeeqlaq 198
++G+S VGKSS iN l+ + +k+ ++s++ ++ T+ + f+++ G ++D+PG ++ + + q a+
MMSYN1_0247 26 CLIGRSNVGKSSFINSLTNN--NKLAKISNTPGK----TRLLNFFEINKGeyRLVDAPGYGYAKVDDNLKIQFAK 94
589**************875..556668876654....8999999998773459****98777665544444444 PP
== domain 2 score: -0.1 bits; conditional E-value: 0.41
TIGR00157 68 kniepiivlnkkdlleeedaekeqleelknlgY 100
ni +i+ +k d+l++ + k+ + + +++
MMSYN1_0247 133 YNIPVVIIGTKLDKLKKSEYIKNEKMIKETINF 165
466677777777877776655444434444432 PP
>> TIGR03156 GTP_HflX: GTP-binding protein HflX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.9 0.1 6.7e-06 0.0022 185 217 .. 18 50 .. 8 54 .. 0.86
2 ? 1.0 0.1 0.12 39 297 330 .. 130 163 .. 117 193 .. 0.69
Alignments for each domain:
== domain 1 score: 14.9 bits; conditional E-value: 6.7e-06
TIGR03156 185 kksevptvalvGYTNaGKstllnaltkaevlae 217
+++v ++ l+G N GKs+++n+lt+++ la+
MMSYN1_0247 18 INDDVSEICLIGRSNVGKSSFINSLTNNNKLAK 50
567899*********************998775 PP
== domain 2 score: 1.0 bits; conditional E-value: 0.12
TIGR03156 297 lgaeeipvllvlNkidkleeeeleeleekkeeav 330
l+ +ipv+++ k+dkl+++e+ ++e+ +e++
MMSYN1_0247 130 LKHYNIPVVIIGTKLDKLKKSEYIKNEKMIKETI 163
667789999999999*999887777776654433 PP
>> TIGR00993 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.4 0.0 3e-06 0.00096 120 186 .. 24 89 .. 5 128 .. 0.82
Alignments for each domain:
== domain 1 score: 15.4 bits; conditional E-value: 3e-06
TIGR00993 120 nilvlGkaGvGksatinsilgevkasidafglattsvreieGlvdGvkirvidtpGlkssaldqskn 186
+i ++G++ vGks+ ins+ +++k + + ++ t++ + + +G + r++d+pG + +d+
MMSYN1_0247 24 EICLIGRSNVGKSSFINSLTNNNKLAKISNTPGKTRLLNFFEINKG-EYRLVDAPGYGYAKVDDNLK 89
68899**********************************9998887.89*******99999887654 PP
>> TIGR00092 TIGR00092: GTP-binding protein YchF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.5 0.0 8.7e-05 0.028 7 36 .. 27 57 .. 23 77 .. 0.83
2 ? 0.4 0.0 0.21 66 45 73 .. 137 167 .. 124 186 .. 0.76
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 8.7e-05
TIGR00092 7 ivGLpnvGkstlfqaitka.klgeaanyPfa 36
++G +nvGks + +++t++ kl++++n P
MMSYN1_0247 27 LIGRSNVGKSSFINSLTNNnKLAKISNTPGK 57
6899*************85278999998865 PP
== domain 2 score: 0.4 bits; conditional E-value: 0.21
TIGR00092 45 vnvpderldkL..aeivksekvvpttlefvD 73
v ++ ++ldkL e +k+ek+++ t++f+
MMSYN1_0247 137 VVIIGTKLDKLkkSEYIKNEKMIKETINFYQ 167
5566677887733367788888888888774 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (196 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 296 (0.0659537); expected 89.8 (0.02)
Passed bias filter: 146 (0.0325312); expected 89.8 (0.02)
Passed Vit filter: 33 (0.00735294); expected 4.5 (0.001)
Passed Fwd filter: 14 (0.00311943); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 14 [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1172.77
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0247 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0248 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0248.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0248/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0248 [L=186]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (186 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 353 (0.0786542); expected 89.8 (0.02)
Passed bias filter: 60 (0.013369); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.18
# Mc/sec: 1483.91
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0248 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0249 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0249.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0249/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0249 [L=192]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (192 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 410 (0.0913547); expected 89.8 (0.02)
Passed bias filter: 138 (0.0307487); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.18
# Mc/sec: 1531.78
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0249 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0250 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0250.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0250/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0250 [L=229]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (229 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 376 (0.083779); expected 89.8 (0.02)
Passed bias filter: 85 (0.0189394); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1730.81
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0250 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0253 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0253.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0253/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0253 [L=157]
Description: greA 4=Probable Transcription
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-49 165.9 7.7 1.7e-49 165.7 7.7 1.0 1 TIGR01462 greA: transcription elongation factor GreA
6.1e-26 89.0 1.9 6.8e-26 88.8 1.9 1.0 1 TIGR01461 greB: transcription elongation factor GreB
Domain annotation for each model (and alignments):
>> TIGR01462 greA: transcription elongation factor GreA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 165.7 7.7 7.7e-53 1.7e-49 2 151 .] 7 157 .] 6 157 .] 0.98
Alignments for each domain:
== domain 1 score: 165.7 bits; conditional E-value: 7.7e-53
TIGR01462 2 ltqegleklkeeleelktvkrpeiseeikeAreeGDLsENaeYdaAkeeqaqleariaeleellenakvieesklstd.kvslGskvtikdedtdeee 98
ltqegle+lk+el++l +v rp+++ee+ eAr++GDLsENa+YdaA+++qa++eari+e+e+l+++akvi++sk ++ +v++Gs+v+ +++ +
MMSYN1_0253 7 LTQEGLEELKAELKYLLEVVRPKVIEELVEARNQGDLSENADYDAARNRQAEVEARIKEVETLINRAKVIDDSKTHSTgEVKIGSTVQFVSSLDNKLK 104
8***********************************************************************9987766******************* PP
TIGR01462 99 kytivgsleadvkegkiSveSPlgkaLlgkkvgdevevkvpkgekevkilkie 151
+++ivg ead++++ iS+eSP++ka++gkkv+ +ve+k ++ ++++i +i+
MMSYN1_0253 105 EIKIVGAIEADPFSNLISNESPIAKAIIGKKVNTTVEIKDISKPYKITIKSIK 157
**************************************************996 PP
>> TIGR01461 greB: transcription elongation factor GreB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.8 1.9 3e-29 6.8e-26 4 142 .. 6 146 .. 3 157 .] 0.91
Alignments for each domain:
== domain 1 score: 88.8 bits; conditional E-value: 3e-29
TIGR01461 4 litpeGaeklkdelyelvrkerPevtqavswaaalGdrsenadylygkkrlreidrrvrfltkrlenlkvvdeelree.dkvffGawvelede.dGee 99
++t+eG e+lk+el++l+++ rP+v++ + +a +Gd senady +++r e++ r++ + ++ +kv+d++ ++ ++v G++v++ + d +
MMSYN1_0253 6 ILTQEGLEELKAELKYLLEVVRPKVIEELVEARNQGDLSENADYDAARNRQAEVEARIKEVETLINRAKVIDDSKTHStGEVKIGSTVQFVSSlDNKL 103
689********************************************************************99888776*********9765449999 PP
TIGR01461 100 arvrivGideidtrknkisidsPlaralvkkevgdevvvntPa 142
+ ++ivG e d n is +sP+a+a+++k+v+ v ++
MMSYN1_0253 104 KEIKIVGAIEADPFSNLISNESPIAKAIIGKKVNTTVEIKDIS 146
*********************************9999877655 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (157 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 297 (0.0661765); expected 89.8 (0.02)
Passed bias filter: 98 (0.021836); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1127.29
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0253 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0254 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0254.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0254/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0254 [L=584]
Description: uvrC: excinuclease ABC subunit C 5=Equivalog DNA repair
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-144 479.7 35.8 3.6e-144 479.5 35.8 1.0 1 TIGR00194 uvrC: excinuclease ABC subunit C
3.4e-05 21.9 8.3 3.4e-05 21.9 8.3 3.5 3 TIGR01453 grpIintron_endo: group I intron endonuclease
0.0026 15.6 5.8 0.011 13.5 5.4 2.2 2 TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit
Domain annotation for each model (and alignments):
>> TIGR00194 uvrC: excinuclease ABC subunit C
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 479.5 35.8 2.4e-147 3.6e-144 1 574 [] 3 564 .. 3 564 .. 0.94
Alignments for each domain:
== domain 1 score: 479.5 bits; conditional E-value: 2.4e-147
TIGR00194 1 lkkklkklpkepGvYlmkdkngkvlYvGKaknlkkRvksYFrennsakiqllvkqiaeievivtksekeALlLEanlIkqykPkyNvlLkddkkYpyi 98
lk+++ lp++pG+Yl+++k++ v+YvGKaknlkkRv+ YF++ + k+ lv++i ++ ++++++eke LlLE+nlIk+y+PkyNvlL ddk+Ypyi
MMSYN1_0254 3 LKQQVDLLPNKPGCYLFFNKDNDVIYVGKAKNLKKRVSTYFNKAYNIKTTRLVREITDLKYFIVDNEKESLLLEKNLIKKYHPKYNVLLNDDKTYPYI 100
5789999******************************************************************************************* PP
TIGR00194 99 litkekyprllitRklkkdkskyfGPftnakalretlkllqklfplrkcekkkkkrpClyyqigrClapCveeiteeeyrkivekveeflqgkkqevl 196
+it++k p +Rk+ k++ k +GP + + r +l lq+lfplr c+ + ++pClyy++++C++ C ++ y+ ++++v++f++g+ ++v+
MMSYN1_0254 101 IITNQKDPMYKYVRKYDKKALKNYGPLPIGSNARSILLTLQRLFPLRMCQG-NLNKPCLYYHLNQCSGACFKQVDLSYYEYQIKQVDKFFKGEINQVK 197
**************************************************9.9********************************************* PP
TIGR00194 197 keLeekmekasenleFEeAarlrdqikavrevaekqkvslakkidlDiiavafdknvaavvvlfirqgkligkdekvekleqtekkEvvetfliqfyq 294
++L ++m+kas+nl+FE+A+r++dqi ++ +++kq v++ +++++D+i ++ ++++ + v+lf+r g+l+ kde++++ e+++ +E++++ l+q yq
MMSYN1_0254 198 QTLIKQMQKASDNLQFEQAQRIKDQITSLDFITAKQNVDIVTNKNIDVINYEINQDKICFVMLFYRLGQLTYKDEYIQNYEGQNLSELFNSYLQQIYQ 295
***********************************************************************************************999 PP
TIGR00194 295 qkvetrelPseilvslkeedkklleellselkgrkievskpkkgekkkllelaikNAklaLkekkkqsek....ktealeelaelLkleki.krleif 387
+ ++ P+ +l++ + +++ l++ l e + ++ +++ +++la++NA +L++ + + ++e+le+l+++ + k kr+eif
MMSYN1_0254 296 K----NIYPDVLLIPNE-IELLDLDQNLLEFSS------YSLNKQDDVFIKLAKQNAIDSLNKSVISHNVnsgdEIEILEQLKQISNASKYlKRIEIF 382
9....899999999887.555566666633333......3445566789************99876544346779*************9998****** PP
TIGR00194 388 DishikgeqtvasmvvfedgkplkeeyRrYkiksikkgDdyaamkevlrrryssilkknklplpdliliDGGkgQlnaalevlkslkvvnkvivigla 485
Dis+i ++ +++++v+++ kp+++e+R+Y+i+s dya mk +l++r+ + +k++ ++lpdli++DGG Q++aa+evl++l++ k+ vigl
MMSYN1_0254 383 DISNIYNQFITGACIVYINAKPIRNEFRKYNIDSSYT-SDYARMKFMLEKRFLKRIKEK-EQLPDLIIVDGGIIQIHAAKEVLNKLNL--KIDVIGLS 476
*********************************6655.57***************9955.8899**********************99..9******* PP
TIGR00194 486 KakreegdeiliiekeekeiklnspalqllqkirdEahrfAisfhrkkrekkslqselekieGvGekrkkkLLkyfgslkkikkasvee 574
K+++++++ ++ i +++++ik+ ++ ++l+ ++ ++++A+s rkk ++ +l+ +++ i+GvG+k++ kL k+f+++++ik+as +e
MMSYN1_0254 477 KDDHHKTRYLIDIFEQTIDIKNFKKLYNFLTSLQIRVDEYAKSGFRKKYHN-QLNDQILLIKGVGKKTNLKLYKHFKTIDNIKNASFDE 564
******99999999*****************************99998877.78888889**************************876 PP
>> TIGR01453 grpIintron_endo: group I intron endonuclease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.9 8.3 2.2e-08 3.4e-05 1 115 [. 13 117 .. 13 126 .. 0.80
2 ? -3.0 1.1 0.96 1.4e+03 73 73 .. 374 374 .. 319 438 .. 0.59
3 ? -0.4 5.9 0.15 2.3e+02 72 156 .. 492 574 .. 457 583 .. 0.70
Alignments for each domain:
== domain 1 score: 21.9 bits; conditional E-value: 2.2e-08
TIGR01453 1 ksGiYiitnkingkiYvGssknlekRlkehlknskkknksliskalikyGlenFsfeileyyinkedlkerEtyyikllkplalYNilkeagsslgyk 98
k G Y+++nk n iYvG +knl+kR+ +++++ ++ ++ ++ + ++ l+ F+++ n ++ E+ +ik+ +p +YN+l +++ y
MMSYN1_0254 13 KPGCYLFFNKDNDVIYVGKAKNLKKRVSTYFNKAYNIKTTRLVREITD--LKYFIVD------NEKESLLLEKNLIKKYHP--KYNVLLNDDKTYPYI 100
6699*******************************9988899999986..3444433......556666779999999999..999998888888888 PP
TIGR01453 99 hseetkakmskllkgek 115
++++k m k++++
MMSYN1_0254 101 IITNQKDPMYKYVRKYD 117
88888888877776654 PP
== domain 2 score: -3.0 bits; conditional E-value: 0.96
TIGR01453 73 t 73
+
MMSYN1_0254 374 K 374
1 PP
== domain 3 score: -0.4 bits; conditional E-value: 0.15
TIGR01453 72 EtyyikllkplalYNilkeagssl.gykhseetkakmskllkgekknlllgk.thseetkakiskkklgeknskfgkkhseetkkki 156
+t ik +k+ lYN+l+ + y +s +k+ ++l++++ l +g ++++++ k +k++++ kn f + ++ kki
MMSYN1_0254 492 QTIDIKNFKK--LYNFLTSLQIRVdEYAKSGFRKKYHNQLNDQI--LLIKGVgKKTNLKLYKHFKTIDNIKNASFDELNKVINNKKI 574
3333455555..99999988855548888888888888888887..67777777788999999999999997777766666666655 PP
>> TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.9 0.0 0.35 5.3e+02 94 140 .. 77 123 .. 75 147 .. 0.72
2 ! 13.5 5.4 7.2e-06 0.011 110 228 .. 176 299 .. 158 303 .. 0.79
Alignments for each domain:
== domain 1 score: -1.9 bits; conditional E-value: 0.35
TIGR01146 94 snvlkkveeklkelkeegkevklvviGkkgkeffkrreiniaasvtg 140
+n++kk + k++ l + +k++ +++i ++ ++k + ++++++
MMSYN1_0254 77 KNLIKKYHPKYNVLLNDDKTYPYIIITNQKDPMYKYVRKYDKKALKN 123
68999999999999999999999999888877777655444555555 PP
== domain 2 score: 13.5 bits; conditional E-value: 7.2e-06
TIGR01146 110 egkevklvviGkkgkeffkrreiniaasvtglseqptfeeaqeiadklleafesgevdkveivynkfvsllsqeptvkkllplseke..eek..klee 203
+ e+++ + k k ++ ++ +++++++ s++++fe+aq+i d+++++ + ++v iv nk + ++++e+++ k+ + + + k e
MMSYN1_0254 176 SYYEYQIKQVDKFFKGEINQVKQTLIKQMQKASDNLQFEQAQRIKDQITSLDFITAKQNVDIVTNKNIDVINYEINQDKICFVMLFYrlGQLtyKDEY 273
55667777777777777888899999************************99999999**********************997777755444234445 PP
TIGR01146 204 klefepd.eeeilesLlprylesqiy 228
++e + +e+++s+l++ + +iy
MMSYN1_0254 274 IQNYEGQnLSELFNSYLQQIYQKNIY 299
55566555778888888888888888 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (584 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 431 (0.0960339); expected 89.8 (0.02)
Passed bias filter: 87 (0.019385); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.22
# Mc/sec: 3812.04
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0254 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0257 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0257.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0257/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0257 [L=583]
Description: rnjB 4=Probable RNA metabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.1e-131 435.4 16.5 6.9e-131 435.2 16.5 1.0 1 TIGR00649 MG423: beta-CASP ribonuclease, RNase J family
------ inclusion threshold ------
0.01 13.2 0.0 0.027 11.8 0.0 1.7 1 TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase
Domain annotation for each model (and alignments):
>> TIGR00649 MG423: beta-CASP ribonuclease, RNase J family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 435.2 16.5 3.1e-134 6.9e-131 1 545 [. 4 552 .. 4 553 .. 0.92
Alignments for each domain:
== domain 1 score: 435.2 bits; conditional E-value: 3.1e-134
TIGR00649 1 ikilalGGleEvGkNmtvvevddevvildvGiklpedellgvdvviPdfsylkenedkvkgivlthghedhiGaveyllkkleippiygtkltialik 98
ik++alGG++E+GkN +v+e+d++ +ild+G+k+pe+++lg+d+viP f y+k+n++k+kgi+lt++ ++Gav+yllk++e +piy ++t + k
MMSYN1_0257 4 IKFTALGGQDERGKNLYVLEIDNDFFILDAGVKYPEKDILGIDTVIPKFDYIKQNKKKIKGIFLTNPSAYNMGAVPYLLKEIE-APIYCNEITELIAK 100
79********************************************************************************5.55************ PP
TIGR00649 99 sklkekklnvktd.lkeinekeivelseniaiefirvthSipdSvglalhTpeGsivyagDFkfdntpviaeeadlkklaelgkkgvllLlsdstnve 195
k+++ +l+ k + lk+++ k+i+++ n+++e +r+t+S p+S+g ++hT+ GsivyagD+++d +++ + +d+++l ++ k+gvl+L+sd+ +
MMSYN1_0257 101 IKFQKLRLKNKDHiLKVVHDKDILKI-GNTKVEIFRTTSSSPQSFGYVFHTELGSIVYAGDYIIDGKEQSYFSTDYTHLSQIAKNGVLALISDAEFAS 197
****99988777769***********.77********************************************************************* PP
TIGR00649 196 kegkTpseakvseeledilkeakgrvivatfaSniarvqqiieiAekqgRkvvvlgrsleklleiarklgliklpealfislkevnkspkeevliitt 293
++ +T +++k+ + + +ke+k ++iva+f+ +i+++ qi +A++++Rk++v+gr + +l + ++ + +s++e +s ++ ++i+
MMSYN1_0257 198 RKDFTVPNHKIDKYILAPFKEKKTKIIVAIFEEDIHKLSQICMAAKENNRKIAVYGRTMDAVLRSNLIHENLVIKPEDLMSIQEYVNS--DNGVLIIS 293
*************************************************************997665555555556667888999999..78888899 PP
TIGR00649 294 gsqgeplaaLtrianneheqikirkgDtvvfsakpipgneeiavsklldvrlaeagarvikr...ihvSghasqEdhklllrllkPkyiiPvhGeyrm 388
g ++++++L +ia+ ++ +++ ++D +++ +p++g e+ +++l++ la+++ar + + S +as Ed k+l ++l+Pky+iPv+ y++
MMSYN1_0257 294 GTGDDLYSKLAKIATSNDSLVEFTEKDLIILTNTPVAGVEKRHAQILDE--LARTDARLLALsdkNIWSMRASYEDIKMLTSILNPKYFIPVKALYKD 389
****************************************888888777..77777777665557999****************************** PP
TIGR00649 389 lakytklaeeeGvkeedifilenGevlelegkkikvakk.vlsgnklvDsaglqeigasilreReqlsedGvvivvialdkkksellaepelsslGvv 485
+ + k a e+Gv++++i i++nGe+l+l+++++ ++++ +gn++vD++g++++g+++l+eR+ql+ dGv+iv +++d++++el++ ++ +++Gv
MMSYN1_0257 390 FLNAEKAAIEAGVNNQNIGIIDNGEILKLSKNHLAISEHsAEHGNVYVDGSGIGDVGSIVLNERKQLATDGVIIVGATIDSRNKELISLIDTQMRGVL 487
******************************999987765167899***************************************************** PP
TIGR00649 486 lvkeekelik....ekqe.likkqiseikeisneeskelkkeikdalaklltkktkkaPlilsii 545
+ +e+++ k e+++ +++ q ke ++ +e+kk+i++ +++l++++ k+P++l ii
MMSYN1_0257 488 YIQEDNPIFKilqrEITNlILEGQALYKKEPKKYDLNEIKKDITSKIKQLIKQESGKTPIVLVII 552
***997655511114444333344555566677999**************************998 PP
>> TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.8 0.0 1.2e-05 0.027 32 128 .. 50 162 .. 24 178 .. 0.80
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 1.2e-05
TIGR03413 32 pvlealeekglkleaillTHhHaDHvggvaellekfpvkvvgpaee..............ripgltkevkegdevellelevevlevpGHtlgHiayy 115
p +++++++ k++ i+lT a +g+v ll++++++++ ++ + + +++ k v+++d +++++++ve+++++ + y+
MMSYN1_0257 50 PKFDYIKQNKKKIKGIFLTNPSAYNMGAVPYLLKEIEAPIYCNEITeliakikfqklrlkNKDHILKVVHDKDILKIGNTKVEIFRTTSSSPQSFGYV 147
56789************************************998766777443443422112233345677888888999999999999999999999 PP
TIGR03413 116 leee..kvlFcgDtL 128
+++e +++++gD +
MMSYN1_0257 148 FHTElgSIVYAGDYI 162
998788899999965 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (583 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 244 (0.0543672); expected 89.8 (0.02)
Passed bias filter: 75 (0.0167112); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.21
# Mc/sec: 3986.73
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0257 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0259 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0259.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0259/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0259 [L=265]
Description: nadK 3=Putative Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (265 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 225 (0.0501337); expected 89.8 (0.02)
Passed bias filter: 108 (0.0240642); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1812.15
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0259 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0260 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0260.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0260/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0260 [L=872]
Description: valRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.9e-296 981.5 36.9 9.3e-296 981.3 36.9 1.0 1 TIGR00422 valS: valine--tRNA ligase
2.4e-108 361.4 36.0 9.3e-51 170.9 9.9 3.5 4 TIGR00392 ileS: isoleucine--tRNA ligase
1.3e-49 167.0 41.5 2e-20 70.5 3.4 7.1 7 TIGR00396 leuS_bact: leucine--tRNA ligase
1.6e-41 140.2 35.1 1e-21 74.6 3.1 4.0 4 TIGR00395 leuS_arch: leucine--tRNA ligase
2.8e-31 106.8 37.4 1.3e-22 78.2 16.5 3.6 3 TIGR00398 metG: methionine--tRNA ligase
Domain annotation for each model (and alignments):
>> TIGR00422 valS: valine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 981.3 36.9 1e-298 9.3e-296 3 862 .. 7 852 .. 5 853 .. 0.94
Alignments for each domain:
== domain 1 score: 981.3 bits; conditional E-value: 1e-298
TIGR00422 3 kkYdpkevekklyekweesgvfkpdedeekesfiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkklkaegkt 100
kYd +vek+ y+ w ++++fk+d +++k++f+i++PPPnvTG+lHiGHa+++slqD +iR+k++ g+++lflpG+Dh gi+tqv+vE klk++g +
MMSYN1_0260 7 PKYDHLQVEKDKYQYWLDKNLFKADINSNKPKFSIILPPPNVTGKLHIGHAWDTSLQDAIIRFKKLTGYDTLFLPGMDHSGISTQVKVEAKLKQQGID 104
68************************************************************************************************ PP
TIGR00422 101 kedlgreefvekilewkeesgetikeqlkrLGvsldwsrerfTldeelskavkeaFvrlyeeglIyrgkrlvnwdpkletaisdlEveykevkgklyy 198
k+ lgre+f+ ++++wkee++++i++q+ +LG+sld+s e+fTlde+++++vke Fv++y++ +Iy++k++vnwdp+ +tais++Ev+yke+++k+yy
MMSYN1_0260 105 KNKLGREKFLLEAWKWKEEYANIIRKQWAKLGLSLDYSTEKFTLDEDINQIVKEIFVKFYNDQIIYKDKQIVNWDPEQKTAISNVEVIYKETQSKMYY 202
************************************************************************************************** PP
TIGR00422 199 ikyklangsgkdklvvATTRPEtllgdtavaVhPeDerykelvgkkvilPlvnrkipiiaDeevdkefGtGvvkvtpahDknDyevgkrhklelinil 296
+ky l++++ ++l+vATTRPEt+++d +++V+P+D ry++ ++kkvi+P+ ++ ipii+De+vd efGtGv+k+tpahD nDy++ +h+l++ +l
MMSYN1_0260 203 FKYMLEDSN--EYLTVATTRPETMFVDQCLVVNPNDSRYQKYINKKVINPVNKQVIPIISDEYVDIEFGTGVMKCTPAHDLNDYHLAIKHNLKMPICL 298
*******88..9************************************************************************************** PP
TIGR00422 297 dedgklneeageyqglerfearkkvvedlkeegllvkieplkqnvgtceRsktvvEpllskQWfVkvekLadkaleaaekegeikfvPkrfekeylsW 394
+ dg++n+ g+yqgl+rf ark+++++ +e+l+vk e++ ++vg++eRs+++vEp+ls+QWfVk++k+++++++ ++ +++i+f+P+rf+ +++W
MMSYN1_0260 299 NIDGSVNQLGGKYQGLDRFVARKEIIKNAINEDLFVKEEDIINQVGFSERSNAIVEPYLSDQWFVKMDKFKNMVIDLQNSDNKINFYPNRFSDVLNRW 396
************************************************************************************************** PP
TIGR00422 395 leelkdWcISRQliwghriPvwyeketgevvvakeeaeekektklgskeleqdeDVLDTWfsSslwplstlgWp..eekkdlkkfyptsllvtgfDIi 490
+++ +dWcISRQl+wgh+iP wy+k+t e++v+ + + + + +++qd+DVLDTWfsS+lw++stl + e++ +k+++pts+lvtg+DIi
MMSYN1_0260 397 MTNAHDWCISRQLWWGHQIPCWYHKKTNEMYVGINPP-SDIE------NWTQDQDVLDTWFSSGLWAFSTLLNNkgLESEYFKNYFPTSVLVTGYDII 487
*********************************4433.3333......7*********************866522345789**************** PP
TIGR00422 491 ffWvarmillslaltgqvPfkevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkveaarkFlnKlwnasrfvl 588
ffWvarmi+++l+ t+q+Pfk+vlihglvrde +rKmSKSlgN+idP+d+i++ G D+lR++l +++++G+Di+++ +k+ a+++F+nKlwnasr+v
MMSYN1_0260 488 FFWVARMIFQTLEYTKQIPFKDVLIHGLVRDELNRKMSKSLGNGIDPMDVINNNGCDSLRLFLLTNSTPGQDIRYSNEKILASSNFINKLWNASRYVF 585
************************************************************************************************** PP
TIGR00422 589 mnledk..keleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwyiElvKkelyeeeeeekkeakstlaivLdkllrll 684
nl+++ + + ++ l+ +++wil++l+++ + v e+++ky+f+ a ++l +F+Wn++c wyiE++K++l++++ ++++k+tl +vL+++l ++
MMSYN1_0260 586 LNLDKDfkFDQNFYKTDLEITNQWILTELSKTQAYVYEKMNKYEFSLAGNHLWDFVWNKYCSWYIEFSKVNLNNDK--FNHQTKQTLFYVLKEILIMI 681
****99654445567789999***************************************************7766..88999*************** PP
TIGR00422 685 hpfiPflteeiyqklkekadsimlasyPeveeelvdekaekefelvkeiikevRnlkaesnialnaklevllkleeaeeeaerlkksaedlkk.likl 781
hp+iPf++eeiy ++ k +si l+++ + +++ ++ ++ v+++i+++R++k+ +ni++ + l+v ++++++ ++++ +kk+ +++ + li++
MMSYN1_0260 682 HPLIPFVSEEIYLNMMLK-ESILLEQWTNLNSN----YDTSFIDDVIKMITSIREFKNTKNIKNDVCLSVNVSNTNQ-NHTKLFKKHFDQIYSfLINF 773
***************999.9*******999995....45678999*****************************999.56666776666665415677 PP
TIGR00422 782 eevevvsekeeeeeavakvvpevevlipvkelenkakelaklqkelekekkekeriekkleneafvkkapkevvekekekl 862
+ ++v ++++++ + ++e + i +++nk++ +++l++++++ ++e +r++k l+n++f+kka+ e++++ek+k
MMSYN1_0260 774 CNTKLVDYVIKNKTSL-S-IDEYFIEIANDSFINKNELIKELEQKQNHLNNEITRSQKILNNQEFIKKAKPEKIQSEKIKY 852
7777776666533333.3.344444444479**********************************************9985 PP
>> TIGR00392 ileS: isoleucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 108.6 6.5 6.8e-35 6.1e-32 5 250 .. 8 241 .. 4 254 .. 0.92
2 ! 96.3 2.2 3.6e-31 3.2e-28 295 487 .. 239 427 .. 235 441 .. 0.81
3 ! 170.9 9.9 1e-53 9.3e-51 526 836 .. 436 742 .. 429 760 .. 0.86
4 ? -1.9 0.1 0.17 1.5e+02 727 775 .. 783 832 .. 756 866 .. 0.66
Alignments for each domain:
== domain 1 score: 108.6 bits; conditional E-value: 6.8e-35
TIGR00392 5 kanlskkeekilkkweekdifekvkkkkedkkefvlhdGPPyanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekklgiekk 102
k++ ++e++ +++w +k++f+ + ++k++f++ PP +G++h+gha+ l D i+r+k+++G+++ + pG D G+ +kve kl++++
MMSYN1_0260 8 KYDHLQVEKDKYQYWLDKNLFKADIN--SNKPKFSIILPPPNVTGKLHIGHAWDTSLQDAIIRFKKLTGYDTLFLPGMDHSGISTQVKVEAKLKQQGI 103
56777899*************98666..66779999999*********************************************************99 PP
TIGR00392 103 eeiesleveefrekcrefalkaieeqkeqfqrlgvlvDfekpYltldkeyeesvlellkelaekgllkrdlkvvywspeletaLaeaEveykeykdvk 200
++ + e+f ++ + +++++ ++q +lg+ +D++++ tld++ + v e++ + ++ +++d+++v+w pe +ta+++ Ev yke +
MMSYN1_0260 104 DKNKLGR-EKFLLEAWKWKEEYANIIRKQWAKLGLSLDYSTEKFTLDEDINQIVKEIFVKFYNDQIIYKDKQIVNWDPEQKTAISNVEVIYKE---TQ 197
9888877.**********************************************************************************665...99 PP
TIGR00392 201 dpsiyvkfkvkkeekteakvklslliWTtTPWTLpsNlaiavnp.dleYal 250
+ y k+ ++ +++++ l + Tt P T+ + + vnp d Y +
MMSYN1_0260 198 SKMYYFKYMLE-DSNEY------LTVATTRPETMFVDQCLVVNPnDSRYQK 241
99999999999.56666......8999****************84556654 PP
== domain 2 score: 96.3 bits; conditional E-value: 3.6e-31
TIGR00392 295 yehplsekkeq.leevafvvlggdhVttedGtGivHtAPghGeeDyevgkkygleevllpvdekgvyteevadlkgrfvkdadkdvlkankaiiekLk 391
y++ +++k+ + +++ ++++++V e GtG+ P+h +Dy ++ k++l+ + + ++ +g +++ + +++ d + a k+ii++
MMSYN1_0260 239 YQKYINKKVINpVNKQVIPIISDEYVDIEFGTGVMKCTPAHDLNDYHLAIKHNLK-MPICLNIDGSVNQLGGK-------YQGLDRFVARKEIIKNAI 328
55555555543123556678899*******************************6.66666667743444344.......344443444467777788 PP
TIGR00392 392 eknlllkaekikHsyPhcwRtkkPviyrateqwFikvkeikeelle...eikkvkwvpekgekRlkkmlenrkdWciSRqRyWGvPipvwvaekteel 486
+++l++k+e i + ++ R++ v + ++qwF+k+ ++k+ +++ + +k+++ p++ + l+ ++ n++dWciSRq WG ip w+++kt+e+
MMSYN1_0260 329 NEDLFVKEEDIINQVGFSERSNAIVEPYLSDQWFVKMDKFKNMVIDlqnSDNKINFYPNRFSDVLNRWMTNAHDWCISRQLWWGHQIPCWYHKKTNEM 426
999**********************99**********999998876322668******************************************9987 PP
TIGR00392 487 i 487
MMSYN1_0260 427 Y 427
3 PP
== domain 3 score: 170.9 bits; conditional E-value: 1e-53
TIGR00392 526 ggeykreedvlDvWfdSGsspyav.leyk.lenekkkevfpadlilEGsDQtrGWFyssllisvalsdkapykkvithGfvldekGrKMSKslgNvvd 621
+++++ +dvlD Wf SG ++ l++k le+e +k+ fp +++ G D W ++++p+k v++hG+v de rKMSKslgN +d
MMSYN1_0260 436 IENWTQDQDVLDTWFSSGLWAFSTlLNNKgLESEYFKNYFPTSVLVTGYDIIFFWVARMIFQTLEYTKQIPFKDVLIHGLVRDELNRKMSKSLGNGID 533
4778899***********86554404443144499*********************99999999999******************************* PP
TIGR00392 622 pekvikkyGaDvlRlyvass.dpaedlkfseeilkevaekllkilnntlrFlllyanLdkfkpeekslkveklkelDrwilsklnslveeveealeky 718
p++vi++ G D+lRl+++++ p +d+++s+e + + +++ l+n+ r++ nLdk + ++++ +++l+ +wil++l ++++ v e+++ky
MMSYN1_0260 534 PMDVINNNGCDSLRLFLLTNsTPGQDIRYSNEKILASSN-FINKLWNASRYVF--LNLDKDFKFDQNFYKTDLEITNQWILTELSKTQAYVYEKMNKY 628
******************9999*********99987665.9999999****99..99*987668888888999************************* PP
TIGR00392 719 eflkvlraledfvseeLsnwYlriskdrlyaekkdedkraaqttlyeiletlvkllapilpflaeeiyqnlkeekkeesvhlnefpevdeeavdeale 816
ef+ + ++l dfv ++ +wY+++sk l +k ++++ +tl+++l++++ ++ p++pf++eeiy n+ +es+ l+++++ ++++ +++++
MMSYN1_0260 629 EFSLAGNHLWDFVWNKYCSWYIEFSKVNLNNDKFNHQT---KQTLFYVLKEILIMIHPLIPFVSEEIYLNMML---KESILLEQWTNLNSNYDTSFID 720
****************************9888887766...89*****************************9...68*********98888777877 PP
TIGR00392 817 asmklvkeivea..vlalrdkv 836
+ +k++++i e+ + +++++v
MMSYN1_0260 721 DVIKMITSIREFknTKNIKNDV 742
7777766665431133444444 PP
== domain 4 score: -1.9 bits; conditional E-value: 0.17
TIGR00392 727 ledfvseeLsnwYlriskdrlyaekkdedkr.aaqttlyeiletlvklla 775
++++ s + +++++i+ d++ +++ +++ ++q+ l++ +++ k+l+
MMSYN1_0260 783 IKNKTSLSIDEYFIEIANDSFINKNELIKELeQKQNHLNNEITRSQKILN 832
45555555666666666666666666666655666666666666555554 PP
>> TIGR00396 leuS_bact: leucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 70.5 3.4 2.2e-23 2e-20 1 171 [. 9 195 .. 9 201 .. 0.87
2 ! 10.9 0.0 2.3e-05 0.021 224 271 .. 198 245 .. 196 247 .. 0.88
3 ! 29.7 0.1 4.8e-11 4.3e-08 303 397 .. 244 327 .. 240 336 .. 0.79
4 ! 9.2 0.1 7.6e-05 0.069 162 221 .. 334 397 .. 316 401 .. 0.74
5 ! 7.6 2.1 0.00022 0.2 412 437 .. 401 426 .. 397 431 .. 0.88
6 ? 0.9 0.0 0.024 22 467 568 .. 425 517 .. 421 522 .. 0.73
7 ! 61.1 6.1 1.5e-20 1.4e-17 603 827 .. 521 763 .. 513 784 .. 0.74
Alignments for each domain:
== domain 1 score: 70.5 bits; conditional E-value: 2.2e-23
TIGR00396 1 ykleeieekwqqkwkekkvkkveedsekkkyYiLsmfPYPsgalHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPae........naaierg 90
y++ ++e+ q+w +k+ +k+ +s+k+k+ i+ P g+lH+GH + D++ R+k+l gy+ l G D G+ + i+++
MMSYN1_0260 9 YDHLQVEKDKYQYWLDKNLFKADINSNKPKFSIILPPPNVTGKLHIGHAWDTSLQDAIIRFKKLTGYDTLFLPGMDHSGISTQvkveaklkQQGIDKN 106
678899**99***********************99999999**************************************9864222222335677777 PP
TIGR00396 91 t........aPakwteeniakmkkqlqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevidsd 171
+ + kw ee + ++kq +lg+s d++ e t d++ + + iF++++++ ++yk++ vnw+pe+kt + n evi +
MMSYN1_0260 107 KlgrekfllEAWKWKEEYANIIRKQWAKLGLSLDYSTEKFTLDEDINQIVKEIFVKFYNDQIIYKDKQIVNWDPEQKTAISNVEVIYKE 195
533222222455899999999****************************************************************9555 PP
== domain 2 score: 10.9 bits; conditional E-value: 2.3e-05
TIGR00396 224 seGveleFkiedekekiavfttrpdtlfgvtylalaaehplvkkvake 271
s+ ++++ +ed++e ++v ttrp+t+f + l++ +++ +k++++
MMSYN1_0260 198 SKMYYFKYMLEDSNEYLTVATTRPETMFVDQCLVVNPNDSRYQKYINK 245
556678999****************************99988888765 PP
== domain 3 score: 29.7 bits; conditional E-value: 4.8e-11
TIGR00396 303 glkainPltkekiPiyvanyvlaeYGtgavmgvpahderDfeFakkyklkikevikkaekdlkeealteegvlvnsgefsglkseeakekiikll 397
+ k inP++k+ iPi +yv e+Gtg + pahd +D++ a k++lk+ + ++++++ v+ g+++gl+ +a+++iik
MMSYN1_0260 244 NKKVINPVNKQVIPIISDEYVDIEFGTGVMKCTPAHDLNDYHLAIKHNLKMPICLNIDGS-----------VNQLGGKYQGLDRFVARKEIIKNA 327
6789************************9999*****************99887775422...........233346666666666666666655 PP
== domain 4 score: 9.2 bits; conditional E-value: 7.6e-05
TIGR00396 162 LaneevidsdGrseRgdasvekkelkqwvlkitkyae...kLledLeeLe.WpesvkemqrnWi 221
+ e++i+ G seR++a+ve qw++k+ k+ + +L + ++++ +p++ ++ + W+
MMSYN1_0260 334 VKEEDIINQVGFSERSNAIVEPYLSDQWFVKMDKFKNmviDLQNSDNKINfYPNRFSDVLNRWM 397
4579999999*************************88222355566667777777776666665 PP
== domain 5 score: 7.6 bits; conditional E-value: 0.00022
TIGR00396 412 rDWlvsRqRYWGePiPiihledgnav 437
+DW +sRq +WG iP + +++n +
MMSYN1_0260 401 HDWCISRQLWWGHQIPCWYHKKTNEM 426
7***************9999888765 PP
== domain 6 score: 0.9 bits; conditional E-value: 0.024
TIGR00396 467 kewvkvkkpslgkkakretdtmdtfidss.WYylryldpknkekaldkeklekylPvDlYiGGieHavlHLLYaRFfhkllrdlglvstkePfkkLlt 563
+ +v ++ ps ++ ++ d +dt+ s W + l ++k l++e++++y+P + + G + ++ aR + + l +++ Pfk +l
MMSYN1_0260 425 EMYVGINPPSDIENWTQDQDVLDTWFSSGlWAFSTLL----NNKGLESEYFKNYFPTSVLVTGYD--IIFFWVARMIFQTLE----YTKQIPFKDVLI 512
556666666666677889999****999735554444....35678899*************975..777777777777665....455669999999 PP
TIGR00396 564 qGmvl 568
G+v
MMSYN1_0260 513 HGLVR 517
99886 PP
== domain 7 score: 61.1 bits; conditional E-value: 1.5e-20
TIGR00396 603 lekmskskkngidPqeivkkyGaDalRlyilFasPieksleWdesgleGaeRfldrvynlvkeilsekea....ktelkeealeeaekelrrevhkal 696
kmsks +ngidP +++++ G D+lRl++l +s + +++ ++++++ + f+++++n + + ++ ++++ +++le +++ + +e+ k+
MMSYN1_0260 521 NRKMSKSLGNGIDPMDVINNNGCDSLRLFLLTNSTPGQDIRYSNEKILASSNFINKLWNASRYVFLNLDKdfkfDQNFYKTDLEITNQWILTELSKTQ 618
57*********************************************************987766666654455778888999999999999999999 PP
TIGR00396 697 kkvtedlekke...........slntviselmkllnallkakk.....eelllealkalvtvlspiaPhlaeelaeklgeeeseikqakwpkvde... 775
+ v+e+++k e n s ++++ l++ k ++ l lk+++ +++p++P+++ee+ ++ +es++ ++ w+++++
MMSYN1_0260 619 AYVYEKMNKYEfslagnhlwdfVWNKYCSWYIEFSKVNLNNDKfnhqtKQTLFYVLKEILIMIHPLIPFVSEEIYLNMMLKESILLEQ-WTNLNSnyd 715
99999999998777777777666788888888887655555545555457888899*****************998888788766665.777664111 PP
TIGR00396 776 talvedkvkivvqvngkvkakievakead.eeeveelakkdeevkkylenkki 827
t +++d +k++ +++ +k+++++++++ +v ++ ++++ +l +k+
MMSYN1_0260 716 TSFIDDVIKMITSIR-EFKNTKNIKNDVClSVNVSNTNQNHT----KLFKKHF 763
456677777777776.57777777766541334444433333....3333333 PP
>> TIGR00395 leuS_arch: leucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 74.6 3.1 1.2e-24 1e-21 3 234 .. 14 236 .. 12 241 .. 0.90
2 ! 23.7 0.1 2.9e-09 2.6e-06 272 324 .. 240 293 .. 235 308 .. 0.84
3 ! 5.9 1.1 0.00069 0.62 426 500 .. 336 416 .. 300 425 .. 0.67
4 ! 50.4 12.2 2.5e-17 2.2e-14 567 918 .. 470 836 .. 441 870 .. 0.68
Alignments for each domain:
== domain 1 score: 74.6 bits; conditional E-value: 1.2e-24
TIGR00395 3 iekkyqkrWeeekifeadpddre.kffltvayPylnGvlhaGhlrtftivevvarfermkgknvLfplgfhvtGtPilglaekikrrdektikvytev 99
+ek + W ++++f+ad +++ kf + ++ P + G lh+Gh+ + ++++rf+++ g+ Lf G+ g++ ++k ++++ + ++
MMSYN1_0260 14 VEKDKYQYWLDKNLFKADINSNKpKFSIILPPPNVTGKLHIGHAWDTSLQDAIIRFKKLTGYDTLFL-----PGMDHSGISTQVKVEAKLKQQGIDK- 105
67766678**********998766*****************************************96.....5666667899999999888877776. PP
TIGR00395 100 havPkeellkladpekiveyfsreaesalkslGysidWrrefkttdevydrfieWqlrkLkelGlikkGehpvrycpkdenpvedhdllsGegvtive 197
+++ +e++ l ++ k+ e +++ ++++ +lG s+d+ e t de ++ ++ + k+ + i k ++ v++ p+++ ++ + ++ e +
MMSYN1_0260 106 NKLGREKF--LLEAWKWKEEYANIIRKQWAKLGLSLDYSTEKFTLDEDINQIVKEIFVKFYNDQIIYKDKQIVNWDPEQKTAISNVEVIYKET--QSK 199
57888887..46899***********************************************************************9999885..556 PP
TIGR00395 198 yilikfkledgalylvaatlrPetvyGvtnvfvnPei 234
+ k+ led++ yl +at rPet++ ++ vnP+
MMSYN1_0260 200 MYYFKYMLEDSNEYLTVATTRPETMFVDQCLVVNPND 236
6668*******************************74 PP
== domain 2 score: 23.7 bits; conditional E-value: 2.9e-09
TIGR00395 272 kqligkkvkaPvvgkevpiLPaefvdaekatGvvlsvPahaPady.ialkdLkr 324
+++i+kkv +Pv ++ +pi+ e+vd e +tGv+ + Pah +dy +a+k ++
MMSYN1_0260 240 QKYINKKVINPVNKQVIPIISDEYVDIEFGTGVMKCTPAHDLNDYhLAIKHNLK 293
689*****************************************9456765554 PP
== domain 3 score: 5.9 bits; conditional E-value: 0.00069
TIGR00395 426 ekkvicrcG....dkCvvk.vledqWflkysdeeWkekalkcl...ekmrlipeevkeafeekidWlkdkavarrkGLGtrlP 500
e+++i + G ++ +v+ l dqWf+k +++k+ +++ +k++++p+ + ++++ + +d+ ++r+ G ++P
MMSYN1_0260 336 EEDIINQVGfserSNAIVEpYLSDQWFVKM--DKFKNMVIDLQnsdNKINFYPNRFSDVLNRWMTNAHDWCISRQLWWGHQIP 416
3333333332222345554379******97..789999886442226899999999999999999999*********999999 PP
== domain 4 score: 50.4 bits; conditional E-value: 2.5e-17
TIGR00395 567 efeyfyPldlrisakdLipnhLtfyifthvaifPeefWPrgivvnGyvlle.gkklskskGnlltlkeavekfGadvarlylldaaelvedadfkese 663
f+ ++P + +++ d+i + if+ + ++ + + ++G v e ++k+sks Gn + +++++ G d rl+ll+ + + +d+ + +++
MMSYN1_0260 470 YFKNYFPTSVLVTGYDIIFFWVARMIFQTLE-YTKQIPFKDVLIHGLVRDElNRKMSKSLGNGIDPMDVINNNGCDSLRLFLLTNSTPGQDIRYSNEK 566
58999***************99999998764.77778789*******9987689******************************************** PP
TIGR00395 664 veaakkrlerlkefaeeiakksd.........levgeelsfldrwllsrlnkaikevkealenlelrkavkaalfel..kkdvdyyrrrsgenvkd.. 748
+ a + +++l + ++ + ++d l++ ++w+l++l k+ v+e+++++e+ a + l+++ +k +y + s++n ++
MMSYN1_0260 567 ILASSNFINKLWNASRYVFLNLDkdfkfdqnfY--KTDLEITNQWILTELSKTQAYVYEKMNKYEFSLAGN-HLWDFvwNKYCSWYIEFSKVNLNNdk 661
************999999998885555543211..24577889***************************5.566652267889*****999987668 PP
TIGR00395 749 .......vlaevleaiikLlaPfaPhlaeelyeevGkegfvseakfPevseeavdkevekaeeylrnlvrdike...iakiaaskpkkvylltsedWk 836
l vl++i+ ++ P++P+++ee+y ++ + ++ ++++ +++ + + ++++++ + +i+e ++i+++ v + +++ +
MMSYN1_0260 662 fnhqtkqTLFYVLKEILIMIHPLIPFVSEEIYLNMMLKESILLEQWTNLNSNY---DTSFIDDVIKM-ITSIREfknTKNIKNDVCLSVNVSNTNQNH 755
999989899999***********************9999999****9998873...44444444443.334444222444444444444433333222 PP
TIGR00395 837 vevlk.vvkelesedvkeamkkvreeeelrkrakevaelvkkilkdekkedelliseievlkaaaefikke.vgakkiieskei 918
+++ k + s ++ + k+ + +k++ + e+ +i +d+ ++ +li+e+e ++++++e + +ki++++e
MMSYN1_0260 756 TKLFKkHFDQIYSFLINFCNTKLVDYVIKNKTSLSIDEYFIEIANDSFINKNELIKELEQ---KQNHLNNEiTRSQKILNNQEF 836
222210111122222222233333222222233333333333333333333333333322...222222220122233333322 PP
>> TIGR00398 metG: methionine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.7 1.6 8.4e-15 7.6e-12 8 173 .. 46 233 .. 39 249 .. 0.76
2 ! 78.2 16.5 1.4e-25 1.3e-22 180 504 .. 357 699 .. 339 727 .. 0.80
3 ? -2.5 2.1 0.41 3.7e+02 186 406 .. 804 839 .. 770 871 .. 0.41
Alignments for each domain:
== domain 1 score: 42.7 bits; conditional E-value: 8.4e-15
TIGR00398 8 yYangkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkA....esegltPkel.....v.......dklaeefkklfkllnisfdrFi 89
+ + gk+H+Gh+ t l D++ r+k+l G+++lf+ g D G +++k +++g++ ++l +++a++++k+++ l++s d+ +
MMSYN1_0260 46 PNVTGKLHIGHAWDTSLQDAIIRFKKLTGYDTLFLPGMDHSGISTQVKVeaklKQQGIDKNKLgrekfLleawkwkEEYANIIRKQWAKLGLSLDYST 143
56789********9999*************************76665541122688999765422222122233337899**********99988765 PP
TIGR00398 90 r..TtdeehkeivqkifekllenGyiyekeikglYcvecesflpdr...yvegecpkckeedargdqcekcg.rllePlelieprcvvsk 173
T de+ ++iv++if k ++ iy++++ +++e+++ + + y+e + + + + d e ++ ++ P ++ ++c v++
MMSYN1_0260 144 EkfTLDEDINQIVKEIFVKFYNDQIIYKDKQIVNWDPEQKTAISNVeviYKETQSKMYYFKYMLEDSNEYLTvATTRPETMFVDQCLVVN 233
44499**********************************998888777766655555555556777777765245677777777777765 PP
== domain 2 score: 78.2 bits; conditional E-value: 1.4e-25
TIGR00398 180 eeehyFfrlskfekkleelikknpeskklasevknvlenflkegLkdlaitRdlvewGipvPkd...pnkvvYVWldAligYisalseeknatekfkk 274
++++F++++kf++++ +l + +++ ++ +++ ++vl+ ++ + +d++i+R+l wG ++P + + +YV ++ + i +++++++ ++
MMSYN1_0260 357 LSDQWFVKMDKFKNMVIDLQNSDNKINFYPNRFSDVLNRWMTN-AHDWCISRQLW-WGHQIPCWyhkKTNEMYVGINPPSD-IENWTQDQD---VLDT 448
57899****************999999999*************.9**********.******765448888***9987754.444444444...5666 PP
TIGR00398 275 ywkek....................edaelihliGkdivrfHt..iywPamllalelklpkqlvahgyltve.gkkmSkSkgnvvdpedllarygadi 349
+++ + + G di+ f +++ ++ +++ +k+++ hg + e ++kmSkS+gn++dp d++++ g d
MMSYN1_0260 449 WFSSGlwafstllnnkgleseyfknYFPTSVLVTGYDIIFFWVarMIFQTLEYTKQIP-FKDVLIHGLVRDElNRKMSKSLGNGIDPMDVINNNGCDS 545
6666666666777777777666654344557789*****9975224555555444444.689************************************ PP
TIGR00398 350 lRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvkea.seedekllkkieealekidealekfefkkaleeilklv 446
lR +ll ++ ++D+++s e++ + + +nkl N ++ k f+ +++k + + + + +l ++++++ + e+++k+ef+ a ++++ v
MMSYN1_0260 546 LRLFLLTNSTPGQDIRYSNEKILASS--NFINKLWNASRYVFLNLDKDFKFDQNFYKTDlEITNQWILTELSKTQAYVYEKMNKYEFSLAGNHLWDFV 641
**********************9998..69******999999999**9999999998884455667899***************************87 PP
TIGR00398 447 ..segnklideekPwelakeeekekellavllelirvlsillkpilpklsekilkllnle 504
++ + +i+ +k +l++++ +++ ++l ++++ + i+++p++p +se+i+ + l+
MMSYN1_0260 642 wnKYCSWYIEFSK-VNLNNDK-FNHQTKQTLFYVLKEILIMIHPLIPFVSEEIYLNMMLK 699
3234455555444.3444444.78899999999******************997555443 PP
== domain 3 score: -2.5 bits; conditional E-value: 0.41
TIGR00398 186 frlskfekkleelikknpeskklasevknvlenflkegLkdlaitRdlvewGipvPkdpnkvvYVWldAligYisalseeknatekfkkywkekedae 283
+ +++ k+le++
MMSYN1_0260 804 INKNELIKELEQKQ------------------------------------------------------------------------------------ 817
22222222222222.................................................................................... PP
TIGR00398 284 lihliGkdivrfHtiywPamllalelklpkqlvahgyltvegkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvn 381
MMSYN1_0260 - -------------------------------------------------------------------------------------------------- -
.................................................................................................. PP
TIGR00398 382 klgNllnRtlgfikkyfegklksvk 406
N+ln ++ +k+++++ +k
MMSYN1_0260 818 ---NHLNNEITRSQKILNNQEFIKK 839
...3333333333333332222222 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (872 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 343 (0.076426); expected 89.8 (0.02)
Passed bias filter: 75 (0.0167112); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 5 (0.00111408); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.46u 0.44s 00:00:00.90 Elapsed: 00:00:00.71
# Mc/sec: 1763.70
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0260 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0262 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0262.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0262/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0262 [L=255]
Description: ribulose-phosphate 3-epimerase 5=Equivalog Metabolic process
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-65 219.0 1.0 1.3e-65 218.7 1.0 1.0 1 TIGR01163 rpe: ribulose-phosphate 3-epimerase
0.00014 19.5 0.0 0.00018 19.2 0.0 1.2 1 TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase
------ inclusion threshold ------
0.025 11.8 0.1 0.046 10.9 0.1 1.4 1 TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carbo
Domain annotation for each model (and alignments):
>> TIGR01163 rpe: ribulose-phosphate 3-epimerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 218.7 1.0 8.4e-69 1.3e-65 2 207 .. 6 218 .. 5 221 .. 0.94
Alignments for each domain:
== domain 1 score: 218.7 bits; conditional E-value: 8.4e-69
TIGR01163 2 iapsilsadfarlgeevkkveeaGadliHvDvmDghfvPnltlGpavlealrkltklpldvHlmv....envdkyiekfakagadlitvHvea...se 92
iaps+lsa+f++l++e++ ++++ ++iH+DvmD fvPnlt+G ++l+ ++k +++ +dvH mv ++ +++ ++++ka+++++t+H+e+ +
MMSYN1_0262 6 IAPSVLSANFMELKNELELCKKNNINWIHYDVMDFDFVPNLTFGSKILHDIKKNIDINVDVHFMVsvktKQFEDFFSDYIKAKPEMMTMHIESlkdDN 103
9***************************************************************933333567899999*************822245 PP
TIGR01163 93 hikrllklikelGvkagvvlnPatplealeevlekvdlvllmsvnPGFggqkFipevlekirevrklidekekeilievDGGvkeeniaevaeaGadv 190
i++ ++l k++ + a ++++P+t ++++ l+k+d vl+msv+PGFggqkFi ++leki+ + +l ++k+++ +ievDGG++e++ v++aG+d+
MMSYN1_0262 104 TINKFIDLCKQNNILASLAISPKTDVSLVYPYLDKLDNVLVMSVEPGFGGQKFISSSLEKIQILDQLRNTKNYKYTIEVDGGINEQTSVLVKQAGVDM 201
689999******************************************************************************************** PP
TIGR01163 191 lvagsaifkaddykeai 207
+vags++f++dd +++
MMSYN1_0262 202 IVAGSYLFGSDDFTKRA 218
************98775 PP
>> TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.2 0.0 1.2e-07 0.00018 82 202 .. 96 221 .. 47 225 .. 0.79
Alignments for each domain:
== domain 1 score: 19.2 bits; conditional E-value: 1.2e-07
TIGR03128 82 vlgvaddatikeavkaAkkegkevlvDlinvkDkakrakelkelG.vdiiavHtGlDeqakgkkpledLetllkvvk..evkv..avAGGikldtike 174
+ ++ dd+ti++ ++ k++++ + +D+ l++l v ++ v G q+ ++le+++ l ++++ + k v GGi+++t
MMSYN1_0262 96 IESLKDDNTINKFIDLCKQNNILASLAISPKTDVSLVYPYLDKLDnVLVMSVEPGFGGQKFISSSLEKIQILDQLRNtkNYKYtiEVDGGINEQTSVL 193
4567899999999999999999888888888898888888988862666789999999*999999999997766554113332449************ PP
TIGR03128 175 viklgadvvivGsaitkAedpaeaakki 202
v ++g d+++ Gs + +d ++ ak +
MMSYN1_0262 194 VKQAGVDMIVAGSYLFGSDDFTKRAKGL 221
**************99999998888865 PP
>> TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.9 0.1 3.1e-05 0.046 216 255 .. 167 206 .. 159 212 .. 0.79
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 3.1e-05
TIGR00078 216 avellkekapsvlvEaSGgitldnveeyaetgvdvisvga 255
+l + k+ + ++E+ Ggi++++ +++ gvd+i g+
MMSYN1_0262 167 LDQLRNTKNYKYTIEVDGGINEQTSVLVKQAGVDMIVAGS 206
33444555559*************************9886 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (255 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 265 (0.0590463); expected 89.8 (0.02)
Passed bias filter: 154 (0.0343137); expected 89.8 (0.02)
Passed Vit filter: 17 (0.00378788); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1743.77
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0262 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0263 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0263.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0263/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0263 [L=300]
Description: ribosome small subunit-dependent GTPase A, bsub rsgA is not essential 5=Equivalog Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.5e-64 214.6 1.3 4.4e-64 214.3 1.3 1.1 1 TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase
1.6e-09 35.3 7.9 2.6e-09 34.6 7.9 1.2 1 TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
3e-06 25.0 4.3 0.00013 19.7 0.6 2.3 2 TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding prote
0.00012 19.4 0.1 0.00018 18.8 0.1 1.2 1 TIGR01420 pilT_fam: twitching motility protein
0.00029 18.6 3.1 0.00089 17.0 0.4 2.4 2 TIGR00231 small_GTP: small GTP-binding protein domain
0.00029 18.2 0.6 0.00058 17.2 0.6 1.5 1 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
0.00045 16.2 0.2 0.00056 15.9 0.2 1.1 1 TIGR01448 recD_rel: helicase, RecD/TraA family
0.00061 17.2 1.0 0.00061 17.2 1.0 2.2 2 TIGR00436 era: GTP-binding protein Era
0.0016 15.4 0.1 0.0023 14.9 0.1 1.2 1 TIGR00634 recN: DNA repair protein RecN
0.006 14.6 0.0 0.01 13.8 0.0 1.3 1 TIGR03499 FlhF: flagellar biosynthesis protein FlhF
0.01 13.9 0.7 0.056 11.5 0.2 2.1 2 TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
------ inclusion threshold ------
0.025 11.2 0.0 0.035 10.7 0.0 1.1 1 TIGR02533 type_II_gspE: type II secretion system protein E
0.042 10.7 3.2 0.084 9.7 1.2 2.2 2 TIGR03156 GTP_HflX: GTP-binding protein HflX
Domain annotation for each model (and alignments):
>> TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 214.3 1.3 1.3e-66 4.4e-64 3 246 .. 38 289 .. 36 290 .. 0.90
Alignments for each domain:
== domain 1 score: 214.3 bits; conditional E-value: 1.3e-66
TIGR00157 3 vGDkVvlekgkeaegeveviekyeRknvltRpivaNvdqivlvsslvePelslalldrlLvvaeakniepiivlnkkdlleeedae...keqleelkn 97
vGD V + ++ +g+++ ++ +Rkn l Rp++aNvdq+++v +l eP +s +ll+++++++e+ +i+pi++++k+dll++++ ++++ +++
MMSYN1_0263 38 VGDIVEFSILEDGNGYIK-EI-KPRKNSLDRPKIANVDQVLIVTALYEPLFSSFLLNKYIMMLETLKIKPILIFTKVDLLKQTPYYqevMHKINWYEK 133
8*********99999999.44.5************************************************************9983333455679** PP
TIGR00157 98 lgYkvllvsvkn.....eegleelkeklkkrisvfaGqSGVGKSSLiNl.ldpevkqkvkevseklklGkhTTtsvelfhl.qgGliiDtPGfneldl 188
+ Y+vl++ +k+ + +e+lk l+++isvf+Gq G GKS +N+ ld + + k++e+s+kl++GkhTTts +l++l ++ +i+DtPGf+ +dl
MMSYN1_0263 134 MHYEVLIINNKDnlenkKAIIEKLKSFLENKISVFTGQTGAGKSTTLNNfLDMNNQIKTNEISKKLNRGKHTTTSIQLYNLeNNIFIADTPGFSAFDL 231
********998622211345788999999***************9887615666667899*********************88999************ PP
TIGR00157 189 enleeeqlaqlfvefrellseCkfkdClHqsepdCavkeaveegkisklryesylkli 246
+n++ e++ + ++ f +l +Ckf dC+H++e +C vk+av e+ ++++ y++y+k+
MMSYN1_0263 232 NNIDIEHILYSWETFIPFLNKCKFVDCTHTHESKCEVKKAVAEHLLPTFIYNDYVKVY 289
*******************************************************976 PP
>> TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.6 7.9 7.6e-12 2.6e-09 92 216 .. 103 227 .. 89 240 .. 0.80
Alignments for each domain:
== domain 1 score: 34.6 bits; conditional E-value: 7.6e-12
TIGR03597 92 nkvllvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellelikkarekkdvyvvGvtNVGKSsliNkllklnkgkkkvittS 189
k +l++ K+dll ++ +++ + ++ + k + + ++++ + ++ k ++e++k + e+k +++ G+t GKS+ +N+ l++n++ k+ +S
MMSYN1_0263 103 IKPILIFTKVDLLKQTPYYQEVMHKINWYEKMH---YEVLIINNKDNLENKKAIIEKLKSFLENKISVFTGQTGAGKSTTLNNFLDMNNQIKT-NEIS 196
46689***********99999999888665443...23355566666678889**********************************999887.4555 PP
TIGR03597 190 kfpg....TTldlieipldkesvllDtpGii 216
k + TT + +l+++ ++ DtpG+
MMSYN1_0263 197 KKLNrgkhTTTSIQLYNLENNIFIADTPGFS 227
5443334499999999*************86 PP
>> TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 6.5 0.3 0.004 1.4 121 176 .. 94 147 .. 90 158 .. 0.73
2 ! 19.7 0.6 3.8e-07 0.00013 22 75 .. 167 227 .. 152 256 .. 0.78
Alignments for each domain:
== domain 1 score: 6.5 bits; conditional E-value: 0.004
TIGR03598 121 llellkeakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkke 176
+ +l++ ki+ ++++tK+D lk++ + +++ + + +k+ + evl++ ++++
MMSYN1_0263 94 YIMMLETLKIKPILIFTKVDLLKQTPYYQEVMHKINWYEKM--HYEVLIINNKDNL 147
567899999**************999888777666666666..3466666665554 PP
== domain 2 score: 19.7 bits; conditional E-value: 3.8e-07
TIGR03598 22 afaGrSNvGKSsliNaLtnrk...klartSkt..PGr..TqlinffevneelrlvDlPGYG 75
+f+G+ +GKS+ +N +++ + k ++Sk+ G+ T +i ++++++++++ D PG+
MMSYN1_0263 167 VFTGQTGAGKSTTLNNFLDMNnqiKTNEISKKlnRGKhtTTSIQLYNLENNIFIADTPGFS 227
69*************987655111556678873245466899*****************95 PP
>> TIGR01420 pilT_fam: twitching motility protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.8 0.1 5.2e-07 0.00018 124 154 .. 165 195 .. 136 197 .. 0.78
Alignments for each domain:
== domain 1 score: 18.8 bits; conditional E-value: 5.2e-07
TIGR01420 124 lilvtGptGsGKsttlAslidyinkekakhi 154
+ ++tG+tG+GKsttl ++d n+ k+++i
MMSYN1_0263 165 ISVFTGQTGAGKSTTLNNFLDMNNQIKTNEI 195
5579********************9888776 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.4 0.1 0.16 57 109 143 .. 99 132 .. 69 159 .. 0.72
2 ! 17.0 0.4 2.6e-06 0.00089 7 66 .. 167 229 .. 162 242 .. 0.79
Alignments for each domain:
== domain 1 score: 1.4 bits; conditional E-value: 0.16
TIGR00231 109 kkkgvpiilvvnKiDlkddlktkvkslfaklnaep 143
++ +++ il ++K+Dl + + ++++++k n
MMSYN1_0263 99 ETLKIKPILIFTKVDLLK-QTPYYQEVMHKINWYE 132
456788899999999877.4555666666655444 PP
== domain 2 score: 17.0 bits; conditional E-value: 2.6e-06
TIGR00231 7 vivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt.....ykvnllDTaGqedf 66
v+ G+ ++GKst+ln++l+ + i+ ++++++ +++ +++ + + DT+G +f
MMSYN1_0263 167 VFTGQTGAGKSTTLNNFLDMNNQIKT--NEISKKLNRGKHTTTSIQlynleNNIFIADTPGFSAF 229
67899*************98833333..47888888888888888887777889999****6666 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.2 0.6 1.7e-06 0.00058 12 62 .. 148 198 .. 138 219 .. 0.80
Alignments for each domain:
== domain 1 score: 17.2 bits; conditional E-value: 1.7e-06
TIGR00972 12 gekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGk 62
+k+a+ + ++ +nk+ ++ G +G+Gkst l + +n+++++ +i+ k
MMSYN1_0263 148 ENKKAIIEKLKSFLENKISVFTGQTGAGKSTTLNNFLDMNNQIKTNEISKK 198
45666666667899**************************99998877655 PP
>> TIGR01448 recD_rel: helicase, RecD/TraA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.9 0.2 1.6e-06 0.00056 313 367 .. 138 192 .. 90 209 .. 0.82
Alignments for each domain:
== domain 1 score: 15.9 bits; conditional E-value: 1.6e-06
TIGR01448 313 ilevekklelelseeqkealktaiqdkvviltGGPGtGKtTvtkaiielaeeleg 367
+l +++k +le ++ e lk+ ++k+ ++tG G GK+T+ + +++ +++++
MMSYN1_0263 138 VLIINNKDNLENKKAIIEKLKSFLENKISVFTGQTGAGKSTTLNNFLDMNNQIKT 192
45566666677777777999*****************************999984 PP
>> TIGR00436 era: GTP-binding protein Era
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.5 1.7 0.22 76 101 159 .. 96 154 .. 65 167 .. 0.58
2 ! 17.2 1.0 1.8e-06 0.00061 6 59 .. 169 227 .. 163 236 .. 0.85
Alignments for each domain:
== domain 1 score: 0.5 bits; conditional E-value: 0.22
TIGR00436 101 eklqklkapvvlalnkldnkekdkllelidkeasllefk..eiveisalkgenveelkaiv 159
l +lk++ +l+ k+d ++ +++ ++ + +e e++ i+ ++n+e+ kai+
MMSYN1_0263 96 MMLETLKIKPILIFTKVDLLKQTPYYQEVMHKINWYEKMhyEVLIINN--KDNLENKKAII 154
347888888899999998887777666666666655554355555543..33333333333 PP
== domain 2 score: 17.2 bits; conditional E-value: 1.8e-06
TIGR00436 6 lGrpnvGKSTLlNkllgqkisi....vSpkaqTTrnrisgiltegasqiifi.DtPGlh 59
G++ +GKST lN+ l+ ++ i +S+k + ++ +i + ++ ifi DtPG++
MMSYN1_0263 169 TGQTGAGKSTTLNNFLDMNNQIktneISKKLNRGKHTTTSIQLYNLENNIFIaDTPGFS 227
49**************9999986666899999999999999999988888887*****8 PP
>> TIGR00634 recN: DNA repair protein RecN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.9 0.1 6.7e-06 0.0023 11 40 .. 152 181 .. 146 207 .. 0.90
Alignments for each domain:
== domain 1 score: 14.9 bits; conditional E-value: 6.7e-06
TIGR00634 11 alieelevefergltvltGETGaGKsivid 40
a+ie+l+ +e+ ++v tG TGaGKs +++
MMSYN1_0263 152 AIIEKLKSFLENKISVFTGQTGAGKSTTLN 181
89************************9986 PP
>> TIGR03499 FlhF: flagellar biosynthesis protein FlhF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.8 0.0 2.9e-05 0.01 169 215 .. 135 180 .. 115 182 .. 0.72
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 2.9e-05
TIGR03499 169 daeeareklreaLekklsvkkeedeilekggviaLvGptGvGKTTTl 215
+ e + + ++ Le+k + ++ +++le++ + ++ G+tG GK TTl
MMSYN1_0263 135 HYEVLIINNKDNLENKKAIIEKLKSFLENK-ISVFTGQTGAGKSTTL 180
555555566667777776667777787777.***************8 PP
>> TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.5 0.2 0.00016 0.056 26 75 .. 120 164 .. 110 174 .. 0.84
2 ? 1.0 0.0 0.28 96 43 68 .. 164 191 .. 162 200 .. 0.80
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 0.00016
TIGR01662 26 lypevidalaelkkeGykvvivtNqsgigrgkesveevsekveslleelg 75
y+ev+ ++ ++k+ y+v i+ N++++ +k +++ek++s+le+ +
MMSYN1_0263 120 YYQEVMHKINWYEKMHYEVLIINNKDNLENKK----AIIEKLKSFLEN-K 164
6899**********************999987....488999998887.3 PP
== domain 2 score: 1.0 bits; conditional E-value: 0.28
TIGR01662 43 kvvivtNqsgigrgk..esveevsekve 68
k+ ++t+q+g g+ +++ ++++++
MMSYN1_0263 164 KISVFTGQTGAGKSTtlNNFLDMNNQIK 191
799******7777668989999988876 PP
>> TIGR02533 type_II_gspE: type II secretion system protein E
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.7 0.0 0.0001 0.035 230 273 .. 152 193 .. 135 197 .. 0.75
Alignments for each domain:
== domain 1 score: 10.7 bits; conditional E-value: 0.0001
TIGR02533 230 ellesleklikrphGiiLvtGPtGsGktttLyaalsklnteern 273
+e+l++ +++ i + tG tG+Gk+ttL l+ n+ ++n
MMSYN1_0263 152 AIIEKLKSFLENK--ISVFTGQTGAGKSTTLNNFLDMNNQIKTN 193
4555566665544..6678************9999988877766 PP
>> TIGR03156 GTP_HflX: GTP-binding protein HflX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.1 0.1 0.24 82 285 320 .. 116 153 .. 104 168 .. 0.66
2 ? 9.7 1.2 0.00024 0.084 194 247 .. 168 226 .. 146 231 .. 0.78
Alignments for each domain:
== domain 1 score: -0.1 bits; conditional E-value: 0.24
TIGR03156 285 eqieaveevLeelgaeei..pvllvlNkidkleeeele 320
+q+ +ev++++++ e+ +l++N d+le++++
MMSYN1_0263 116 KQTPYYQEVMHKINWYEKmhYEVLIINNKDNLENKKAI 153
56666788999999877744456677888888855433 PP
== domain 2 score: 9.7 bits; conditional E-value: 0.00024
TIGR03156 194 lvGYTNaGKstllnaltk.aevlaedklFATLdp...ttrrlklpee.eevlltDTVGF 247
+ G T aGKst+ln++ + ++ ++ +++ L+ tt ++l + +++ ++DT GF
MMSYN1_0263 168 FTGQTGAGKSTTLNNFLDmNNQIKTNEISKKLNRgkhTTTSIQLYNLeNNIFIADTPGF 226
4699******9999887735777888888888643337777887665268999****99 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (300 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 364 (0.0811052); expected 89.8 (0.02)
Passed bias filter: 185 (0.041221); expected 89.8 (0.02)
Passed Vit filter: 39 (0.00868984); expected 4.5 (0.001)
Passed Fwd filter: 13 (0.00289661); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 13 [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 1873.10
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0263 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0264 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0264.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0264/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0264 [L=371]
Description: kinase domain protein 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.5e-21 72.8 0.0 4.4e-21 72.4 0.0 1.0 1 TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase fusion pr
1e-10 39.4 0.7 1e-10 39.4 0.7 1.7 2 TIGR03724 arch_bud32: Kae1-associated kinase Bud32
0.00049 16.7 0.1 0.00082 16.0 0.1 1.3 1 TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
Domain annotation for each model (and alignments):
>> TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase fusion protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.4 0.0 2.9e-24 4.4e-21 6 234 .. 56 294 .. 52 310 .. 0.76
Alignments for each domain:
== domain 1 score: 72.4 bits; conditional E-value: 2.9e-24
TIGR03903 6 vaikllRedaa.eeerlvaRFrReialCarLshP.nivaLlDsGeaedgllFavFeyveGrtlrevLaa.dGaLpaaetgrLmlqvLDalaaahdaGv 100
va+k++ + + + e +R e++ a+Ls niv++ D ++ + v e++eG l + +a + +L+ +e lq+ +l hd+ +
MMSYN1_0264 56 VAVKIILKAKNkNIETIKKRLFLETNTFAKLSFSkNIVKMKDVFSWQN-YYVIVMELIEGADLSKKFNAyNNVLSNKEFLYYFLQITKGLKEIHDNNI 152
8888766555526677889999*********97539******999888.7789**********988765389************************** PP
TIGR03903 101 vhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqL.....RgepvtaksDlYaWGLivleCLtGkrvv..qG 191
+hRD+kP ni++++ +s+ ++ DFGi+ + + + d +++++ G+P Y+aPeq R ++ +sD+Y+ G+i+ e LtG + G
MMSYN1_0264 153 IHRDVKPANILITN---DSKVRISDFGISKIKSIILDDHHNHI-----SPGTPRYTAPEQFinfesRKDAFYFESDIYSIGVIMYEFLTGSMLYlnYG 242
************96...467889**********9999554444.....56**********8666668899999*****************96432212 PP
TIGR03903 192 a...s...vaevlykqLsPvdvslPsaia...ghpLgevLRkalnkdvrqRa 234
s ++q +d++ P i+ + L +++ k l kd ++R
MMSYN1_0264 243 SnhtSskeKERTNFQQHILKDITRPREINpniSQALENIIMKCLAKDYKNRY 294
2111101022345666666666666666533345666666666666666665 PP
>> TIGR03724 arch_bud32: Kae1-associated kinase Bud32
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.4 0.7 6.8e-14 1e-10 64 141 .. 98 183 .. 63 190 .. 0.82
2 ? -1.8 0.0 0.28 4.2e+02 163 191 .. 278 306 .. 258 310 .. 0.76
Alignments for each domain:
== domain 1 score: 39.4 bits; conditional E-value: 6.8e-14
TIGR03724 64 vydvdpeekkivmeyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkske 141
v++ + + + ivme ieg +l++ +++ ++ ++ ++ + + ++H+++i+h D+ ++Ni++ +d+k+ + DfG++k+++
MMSYN1_0264 98 VFSWQ-NYYVIVMELIEGADLSKKFNAYNNvlsnkeflYYFLQITKGLKEIHDNNIIHRDVKPANILItNDSKVRISDFGISKIKSI 183
55444.4599****************9888899998888999************************99457788899*****98765 PP
== domain 2 score: -1.8 bits; conditional E-value: 0.28
TIGR03724 163 laeelieaflegYkeeveeekavlekvke 191
l++ +++ +++ Yk+ +++ ++++e +++
MMSYN1_0264 278 LENIIMKCLAKDYKNRYHRFDQIIEDLEQ 306
45567777888888888888888887776 PP
>> TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.0 0.1 5.5e-07 0.00082 230 302 .. 103 177 .. 81 182 .. 0.88
Alignments for each domain:
== domain 1 score: 16.0 bits; conditional E-value: 5.5e-07
TIGR01982 230 servltlewidgipvsdleklkeaGldlkalaenlvesf..lkqvlrdgfFHaDlHpGNilvakdgkiialDfGi 302
v+++e i+g +s + + ++ l k+ ++++ lk++ ++++ H D+ p Nil+++d+k+ + DfGi
MMSYN1_0264 103 NYYVIVMELIEGADLSKKFNAYNNVLSNKEFLYYFLQITkgLKEIHDNNIIHRDVKPANILITNDSKVRISDFGI 177
55799*********99998888888999999999887754599*******************************9 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (371 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 304 (0.0677362); expected 89.8 (0.02)
Passed bias filter: 86 (0.0191622); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 2421.69
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0264 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0270 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0270.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0270/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0270 [L=138]
Description: T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 5=Equivalog tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.8e-27 92.4 0.3 5.5e-27 92.2 0.3 1.0 1 TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modific
0.00014 19.2 0.1 0.0002 18.6 0.1 1.2 1 TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and
0.00046 17.2 0.4 0.00066 16.7 0.4 1.2 1 TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
0.0005 17.0 0.0 0.00064 16.6 0.0 1.1 1 TIGR02928 TIGR02928: orc1/cdc6 family replication initiation
0.00088 16.7 0.1 0.0011 16.5 0.1 1.4 1 TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CT
0.0052 13.6 0.1 0.0063 13.3 0.1 1.1 1 TIGR00959 ffh: signal recognition particle protein
0.0074 13.9 0.0 0.0074 13.9 0.0 1.2 1 TIGR00678 holB: DNA polymerase III, delta' subunit
------ inclusion threshold ------
0.013 12.8 0.0 0.016 12.4 0.0 1.4 1 TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
0.017 12.3 0.0 0.017 12.2 0.0 1.1 1 TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood A
0.28 8.7 7.2 0.024 12.1 1.6 1.9 2 TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-
Domain annotation for each model (and alignments):
>> TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 92.2 0.3 1.2e-29 5.5e-27 6 129 .. 12 133 .. 5 138 .] 0.83
Alignments for each domain:
== domain 1 score: 92.2 bits; conditional E-value: 1.2e-29
TIGR00150 6 kallklgkklakaldlatvvlLkGdlGaGKttlvkgllkglGiqgevkSPtftlveeYneaklklyHlDlYrledkeelEllgleeylekegiilvEW 103
+++k kk++++ ++ +lLkGdlGaGKtt++k+ll+++ i+ +++SP f ++++Y +++lk+ H+D Yrl++ e+E ++l+e+l++ + ++EW
MMSYN1_0270 12 YKIAKKIKKIIQNQKIPFYILLKGDLGAGKTTFTKALLEQFNIKDNITSPSFVIMNQYFIDDLKINHMDAYRLNNDSEIE-MYLDEFLDG--LNIIEW 106
3444444555566666677*******************************************************999998.578888865..999*** PP
TIGR00150 104 pekkleklp.eedlqikikevgderei 129
e+ l ++l i+ik+ ++++
MMSYN1_0270 107 YENLDLDLNaINKLIIEIKIIDENQRL 133
**9988888788999999999987665 PP
>> TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.6 0.1 4.5e-07 0.0002 21 66 .. 13 58 .. 4 67 .. 0.88
Alignments for each domain:
== domain 1 score: 18.6 bits; conditional E-value: 4.5e-07
TIGR02397 21 hvvktLknaikknkiahayLfsGprGvGKTsiArilAkalNCenke 66
++k +k+ i+++ki L+ G G GKT+ + l + N +++
MMSYN1_0270 13 KIAKKIKKIIQNQKIPFYILLKGDLGAGKTTFTKALLEQFNIKDNI 58
68999******************************99999988765 PP
>> TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.7 0.4 1.5e-06 0.00066 124 169 .. 5 53 .. 1 60 [. 0.83
Alignments for each domain:
== domain 1 score: 16.7 bits; conditional E-value: 1.5e-06
TIGR02788 124 llellkagdikeFlklaiaakk...niiisGgtgsgKTTflkalvkliP 169
+ +l ++ +i++ +k+ i+++k i++ G g+gKTTf+kal++++
MMSYN1_0270 5 VNNLEQTYKIAKKIKKIIQNQKipfYILLKGDLGAGKTTFTKALLEQFN 53
56778888999999*****9995555*******************9875 PP
>> TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.6 0.0 1.4e-06 0.00064 22 66 .. 9 54 .. 6 77 .. 0.87
Alignments for each domain:
== domain 1 score: 16.6 bits; conditional E-value: 1.4e-06
TIGR02928 22 eqieelakalkpilrgsr.psnvliyGktGtGKtavtkkvlkelee 66
eq ++ak +k+i+++++ p +l+ G G GKt+ tk++l++++
MMSYN1_0270 9 EQTYKIAKKIKKIIQNQKiPFYILLKGDLGAGKTTFTKALLEQFNI 54
5777899*******9654499*********************9875 PP
>> TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.5 0.1 2.3e-06 0.0011 45 75 .. 30 60 .. 22 133 .. 0.84
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 2.3e-06
TIGR03015 45 filitGevGaGkttlvrnllkkleaekvvla 75
+il+ G++GaGktt+ + ll++ + ++ + +
MMSYN1_0270 30 YILLKGDLGAGKTTFTKALLEQFNIKDNITS 60
79*******************9886665554 PP
>> TIGR00959 ffh: signal recognition particle protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.3 0.1 1.4e-05 0.0063 84 125 .. 13 55 .. 1 69 [. 0.77
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 1.4e-05
TIGR00959 84 llgeesaelklaekkpavillvGLqGsGKtttaaKlakk.lkk 125
++++ +++ +++k p +ill G G+GKtt++ l ++ + k
MMSYN1_0270 13 KIAKKIKKIIQNQKIPFYILLKGDLGAGKTTFTKALLEQfNIK 55
567888889999*******************998776653444 PP
>> TIGR00678 holB: DNA polymerase III, delta' subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.9 0.0 1.7e-05 0.0074 2 43 .. 16 56 .. 15 130 .. 0.83
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 1.7e-05
TIGR00678 2 kalkralekgrlahAlLfaGpeGvGkealaealakallCeke 43
k++k+++++++++ +L++G+ G Gk+++ +al ++++ + +
MMSYN1_0270 16 KKIKKIIQNQKIPFYILLKGDLGAGKTTFTKALLEQFNIK-D 56
578999*****************************99887.3 PP
>> TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.4 0.0 3.7e-05 0.016 128 164 .. 17 56 .. 5 105 .. 0.78
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 3.7e-05
TIGR02782 128 vlreavaark...nilvvGGtgsGkttLanallaeiaksa 164
++++++ +k il+ G g+Gktt++ all++ ++
MMSYN1_0270 17 KIKKIIQNQKipfYILLKGDLGAGKTTFTKALLEQFNIKD 56
455555555533369*******************987643 PP
>> TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.2 0.0 3.8e-05 0.017 155 207 .. 6 57 .. 1 85 [. 0.77
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 3.8e-05
TIGR03819 155 delvaagaiapevaelleaivaarlallvsGgtGsGkttLLsalLalvaedeR 207
++l ++ ia+++++++++ + +l+ G G+Gktt alL + + ++
MMSYN1_0270 6 NNLEQTYKIAKKIKKIIQNQ-KIPFYILLKGDLGAGKTTFTKALLEQFNIKDN 57
55666666666666666542.333567899***************98876665 PP
>> TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.1 1.6 5.4e-05 0.024 19 33 .. 14 28 .. 10 29 .. 0.90
2 ? -1.0 0.4 0.66 2.9e+02 23 32 .. 117 126 .. 116 132 .. 0.82
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 5.4e-05
TIGR02433 19 gsKklKklfidakvP 33
Kk+Kk+++++k+P
MMSYN1_0270 14 IAKKIKKIIQNQKIP 28
56************9 PP
== domain 2 score: -1.0 bits; conditional E-value: 0.66
TIGR02433 23 lKklfidakv 32
+ kl+i+ k+
MMSYN1_0270 117 INKLIIEIKI 126
789****998 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (138 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 363 (0.0808824); expected 89.8 (0.02)
Passed bias filter: 228 (0.0508021); expected 89.8 (0.02)
Passed Vit filter: 58 (0.0129234); expected 4.5 (0.001)
Passed Fwd filter: 10 (0.00222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 10 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 990.87
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0270 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0271 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0271.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0271/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0271 [L=187]
Description: T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5=Equivalog tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-26 91.4 0.0 2.1e-26 91.2 0.0 1.1 1 TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modific
0.002 15.2 0.0 0.0028 14.8 0.0 1.1 1 TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine mo
------ inclusion threshold ------
0.012 12.8 0.0 0.021 12.0 0.0 1.3 1 TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 fam
0.016 12.6 0.0 0.021 12.2 0.0 1.2 1 TIGR04151 exosort_VPDSG: exosortase C, VPDSG-CTERM-specific
Domain annotation for each model (and alignments):
>> TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 91.2 0.0 1.9e-29 2.1e-26 2 161 .. 3 151 .. 2 184 .. 0.88
Alignments for each domain:
== domain 1 score: 91.2 bits; conditional E-value: 1.9e-29
TIGR03725 2 LaiDTsteacsvalledgevvaesiedsgrrhselllpaieellaeaglslqdldaiavglGPGsFTGlRiGlatakgLala.lgipvvgvssldala 98
L+iDT++ +++ l +d++++++ i ++++ s + + +ee+l++++l+l+dl+a++ ++GPGs+TG+R+Gl+++k+L + v+ ++sl a
MMSYN1_0271 3 LFIDTTNWKLIYLLEKDNQIIDSLIILNNKKLSDIAILKLEEFLKNNNLTLNDLKAFYLTIGPGSYTGVRVGLTIVKTLKVLnNNFDVFIINSLLYQA 100
99************66***************************************************************98747799*****999887 PP
TIGR03725 99 aaalaantagrvlvildarrgevYwarYdadglgdiqrlsedallapeellealkesnrvilv 161
+ ++++++dar +++Y++++ ++ ++l e++l++ +++++ +++ +++ l+
MMSYN1_0271 101 GL-----N--KIISCIDARSNKYYVSVF-----NNAKQLLEISLIDQDQINNLINQYQDYKLI 151
77.....3..79****************.....778999999999999999888877654444 PP
>> TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.8 0.0 2.5e-06 0.0028 57 101 .. 42 86 .. 31 101 .. 0.86
Alignments for each domain:
== domain 1 score: 14.8 bits; conditional E-value: 2.5e-06
TIGR03723 57 veealeeagvkledidaiAvtagPGLvgaLlvGvsvakalalalk 101
+ee l++ +++l+d++a +t gPG +++ vG+++ k+l + +
MMSYN1_0271 42 LEEFLKNNNLTLNDLKAFYLTIGPGSYTGVRVGLTIVKTLKVLNN 86
7899************************************98654 PP
>> TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.0 0.0 1.9e-05 0.021 56 99 .. 42 85 .. 31 96 .. 0.90
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 1.9e-05
TIGR00329 56 lekalkesnvelseidliavtagPGlagaLlvgatvArsLalal 99
le+ lk++n++l+++++ +t gPG +vg+t+ ++L +
MMSYN1_0271 42 LEEFLKNNNLTLNDLKAFYLTIGPGSYTGVRVGLTIVKTLKVLN 85
68899***********************************8865 PP
>> TIGR04151 exosort_VPDSG: exosortase C, VPDSG-CTERM-specific
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.2 0.0 1.8e-05 0.021 244 287 .. 77 120 .. 51 129 .. 0.90
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 1.8e-05
TIGR04151 244 lviplGiirnGirvlilaelcvqiGpeqinsaihnrGGqylfvl 287
+v l ++ n + v+i+ l +q G ++i s i r +y+ +
MMSYN1_0271 77 IVKTLKVLNNNFDVFIINSLLYQAGLNKIISCIDARSNKYYVSV 120
6778999******************************9998765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (187 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 250 (0.0557041); expected 89.8 (0.02)
Passed bias filter: 98 (0.021836); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1278.76
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0271 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0281 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0281.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0281/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0281 [L=226]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (226 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 198 (0.0441176); expected 89.8 (0.02)
Passed bias filter: 70 (0.0155971); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1545.46
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0281 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0282 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0282.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0282/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0282 [L=474]
Description: proRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-173 576.3 5.6 1.4e-173 576.2 5.6 1.0 1 TIGR00408 proS_fam_I: proline--tRNA ligase
4.9e-27 93.0 3.4 2.9e-16 57.4 0.5 2.3 2 TIGR00409 proS_fam_II: proline--tRNA ligase
1.3e-23 81.6 5.7 6.3e-14 49.7 1.1 2.1 2 TIGR00418 thrS: threonine--tRNA ligase
1.2e-06 25.3 5.0 5e-06 23.3 2.6 2.3 3 TIGR00389 glyS_dimeric: glycine--tRNA ligase
4.7e-05 20.5 0.2 0.0021 15.1 0.0 2.2 2 TIGR00442 hisS: histidine--tRNA ligase
0.005 15.2 0.2 0.016 13.6 0.2 1.8 1 TIGR03367 queuosine_QueD: queuosine biosynthesis protein Que
Domain annotation for each model (and alignments):
>> TIGR00408 proS_fam_I: proline--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 576.2 5.6 1.8e-176 1.4e-173 3 475 .] 10 474 .] 8 474 .] 0.98
Alignments for each domain:
== domain 1 score: 576.2 bits; conditional E-value: 1.8e-176
TIGR00408 3 ekeedfseWydqilekaelldyydvkGlvvllpnsfkiwekiqkllddkldeieveevyfPllipeselekEkeHikGFepEvylitqaGkkkLeekl 100
++ dfs+Wy++i+ +++l++y++vkG+++++p++++iwe iqk ld+ +++i+v++vyfPllipes+++kEk+Hi+GF+pE++ +t++G+k+Lee+l
MMSYN1_0282 10 PRNIDFSQWYTDIVLNTKLASYGPVKGTMIFRPYGYRIWELIQKYLDEEFKKINVDNVYFPLLIPESLFNKEKDHIEGFSPEIATVTKVGEKQLEENL 107
5778********************************************************************************************** PP
TIGR00408 101 alRPtsEtvlynlykkwvksyrdLPlklnqivnvfRyEkkhtrPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiPvlvgrkseke 198
+RPtsE+v++++++ ++syrdLPl++nq+ nv+R+Ek trP+lRt+Efl++E+Ht+h+ +eae+ lkil++Y+++ ++ L +Pv++g+k+eke
MMSYN1_0282 108 FIRPTSEVVMMDYFSNEINSYRDLPLIYNQWCNVMRWEKT-TRPFLRTSEFLWQEGHTVHSSYNEAEDFCLKILNIYEKFAKDILLLPVICGKKTEKE 204
***************************************9.********************************************************* PP
TIGR00408 199 kFaGaeytvaieaimpdgralqiatsHdLgqnFaktFeikfenkegekayayqtsyGlstRvigaliliHsDdkGLvlPpkvapiqvvvipiifkkke 296
kFaGa+ t++ie++m dg+alq++tsH ++nF+k ++ikf+nke++ + ay+ts+G+stR+igali++HsDd GLvlP k++piq+ +i k++
MMSYN1_0282 205 KFAGAKDTYTIESLMFDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGVSTRLIGALIMTHSDDNGLVLPSKISPIQIQIIQ--IKNT- 299
******************************************************************************************9..3433. PP
TIGR00408 297 nkkvlelarkveekLkkleiRvelderdnrpGkkfskaElkGiPlrlevgpkdieknavvvlrRdekk.KvevsldeleekvkelleelkedlfkkAk 393
+++ ++ + +++kL R+ +d++d++ G+k s+aE+kGiP+r+e+gp+d+e+n+++++rRd+++ K++++++++++ v ++++++ +l+++A
MMSYN1_0282 300 -EQIDQVVEIIKDKLSDY--RIDVDNSDKSFGFKISEAEIKGIPIRIEIGPRDLENNQITISRRDQQEnKIKIDYKDVKKVVDQMIKDYDLALYNNAL 394
.579999999*****998..*********************************************9888***************************** PP
TIGR00408 394 elveekvkeveeleeikqalnekkgvvlvalkgeeeleeelkekvkatircieedldvldlgqkCikcerkakkyvllakay 475
e +++++ +++++ee ++l++ +g+vlv+++g e+e+++k+k+++++rci++d++ + kC +c++ + v++a+ay
MMSYN1_0282 395 ENRKNRTFKADTIEEYIEILKQNQGFVLVPFCGRVECEQDIKTKTATNSRCIPFDQKEVKA--KCFNCKKDTCLQVIFARAY 474
******************************************************9877766..*****************99 PP
>> TIGR00409 proS_fam_II: proline--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.1 0.1 1.1e-12 8.3e-10 38 188 .. 36 190 .. 31 197 .. 0.88
2 ! 57.4 0.5 3.9e-19 2.9e-16 419 565 .. 235 378 .. 220 381 .. 0.88
Alignments for each domain:
== domain 1 score: 36.1 bits; conditional E-value: 1.1e-12
TIGR00409 38 GlynylPlalrvlekvenivreemnkagaievllpalqsaelW.qesgRwdkygeellrlkDrker....efvLgpthEEvitdlvkneiksYkqlPv 130
G + P ++r+ e +++ + ee +k + +v +p l +++l+ +e + + +++e+ + +e+ ++ + pt E v+ d nei+sY++lP+
MMSYN1_0282 36 GTMIFRPYGYRIWELIQKYLDEEFKKINVDNVYFPLLIPESLFnKEKDHIEGFSPEIATVTKVGEKqleeNLFIRPTSEVVMMDYFSNEINSYRDLPL 133
556688*********************************9998356899******9988876555411116789************************ PP
TIGR00409 131 nlYqiqtKfRDEiRPRfGllRgREFimKDaYsFhsdeeslkatyqkldeaYkkifsrl 188
q + R E+ R lR+ EF+ +++ hs+ +++++ k+ + Y+k +++
MMSYN1_0282 134 IYNQWCNVMRWEKTTRP-FLRTSEFLWQEGHTVHSSYNEAEDFCLKILNIYEKFAKDI 190
************98885.89**********************999**99999988876 PP
== domain 2 score: 57.4 bits; conditional E-value: 3.9e-19
TIGR00409 419 tkYskalkatfldeegkeqvlemGCYGiGvsRlvsaivEqkrDekGiiWpkaiAPyevvivvsnvkdeeqkklaeevyselkakgvdvllDdrneraG 516
++++k +++f+++e+k + +G+ +Rl++a + ++D++G++ p++i P +++i+ + + + +++e ++ +l +dv D+ ++ +G
MMSYN1_0282 235 DNFTKVYDIKFQNKENKLEHAYSTSWGVS-TRLIGALIMTHSDDNGLVLPSKISPIQIQIIQIKNTE-QIDQVVEIIKDKLSDYRIDV--DNSDKSFG 328
567888999**********9999999996.8******************************998776.8999***********99997..******** PP
TIGR00409 517 vkfrdseliGiplavvvGkksldnkeiEvkkrrngekq.likkaelkevl 565
k+ + e+ Gip+++ +G + l+n++i + +r ++e++ +i +++k+v+
MMSYN1_0282 329 FKISEAEIKGIPIRIEIGPRDLENNQITISRRDQQENKiKIDYKDVKKVV 378
***************************99988777654156666666665 PP
>> TIGR00418 thrS: threonine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.5 0.3 3.5e-12 2.6e-09 190 334 .. 34 182 .. 19 217 .. 0.79
2 ! 49.7 1.1 8.4e-17 6.3e-14 422 562 .. 237 379 .. 184 382 .. 0.79
Alignments for each domain:
== domain 1 score: 34.5 bits; conditional E-value: 3.5e-12
TIGR00418 190 gpGlvlwlpkGalirklledfvrekllkrgyeevetPiladlelwei.sghldkykermfrfkeee....ekelvlkpmnCpghilifksslrsyrdL 282
+G +++ p G +i +l+++++ e+ +k + ++v+ P l+ +l+++ + h++ ++ + ++++ e++l+++p + + f++++ syrdL
MMSYN1_0282 34 VKGTMIFRPYGYRIWELIQKYLDEEFKKINVDNVYFPLLIPESLFNKeKDHIEGFSPEIATVTKVGekqlEENLFIRPTSEVVMMDYFSNEINSYRDL 131
4699************************************9999865278******999888776545567899************************ PP
TIGR00418 283 PlrlaelgvvhRyEksGeLvGLkRvRgftldDaHifct.edQikeEiknalrl 334
Pl + v R Ek + R +f + H++ + + +++ ++l++
MMSYN1_0282 132 PLIYNQWCNVMRWEKTT--RPFLRTSEFLWQEGHTVHSsYNEAEDFCLKILNI 182
**************964..4566666666666666665444444444555555 PP
== domain 2 score: 49.7 bits; conditional E-value: 8.4e-17
TIGR00418 422 lperfdltyvdedekekrPviiHrailGsieRfiaiLlEkaagel....PlwLaPvQvrvipvs..ekhldyakkvaeklkkegirvdvddrneklgk 513
+ +d+++ ++++k ++ + G R+i++L+ ++ + P ++P+Q+++i ++ e+ + ++ +++kl+ + r+dvd+++ + g+
MMSYN1_0282 237 FTKVYDIKFQNKENKLEHAY---STSWGVSTRLIGALIMTHSDDNglvlPSKISPIQIQIIQIKntEQIDQVVEIIKDKLS--DYRIDVDNSDKSFGF 329
45679999999999999976...56677788999999876655444455**************874445556666677776..789************ PP
TIGR00418 514 kiReaqkekipyvlvvGdkEveeeavtvRerk.eekkekmsleellekvr 562
ki ea+++ ip+ + +G +++e++++t+ +r+ +e+k k++ +++ + v
MMSYN1_0282 330 KISEAEIKGIPIRIEIGPRDLENNQITISRRDqQENKIKIDYKDVKKVVD 379
****************************7766367778999999888775 PP
>> TIGR00389 glyS_dimeric: glycine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.5 0.0 0.11 79 23 89 .. 31 97 .. 26 101 .. 0.83
2 ? 0.1 0.0 0.071 53 147 229 .. 96 176 .. 89 196 .. 0.79
3 ! 23.3 2.6 6.6e-09 5e-06 462 564 .. 279 381 .. 243 382 .. 0.86
Alignments for each domain:
== domain 1 score: -0.5 bits; conditional E-value: 0.11
TIGR00389 23 YgGlaglvDygPlGaelknnikkawrkffileeevlevdspiltpeevl.kasGHvdkFtDalveckk 89
Yg + g++ + P G + + i+k + + f ++ +v +v p+l+pe ++ k H++ F+ + k
MMSYN1_0282 31 YGPVKGTMIFRPYGYRIWELIQKYLDEEF-KKINVDNVYFPLLIPESLFnKEKDHIEGFSPEIATVTK 97
99999************998888888877.677899999******99984567999999987766655 PP
== domain 2 score: 0.1 bits; conditional E-value: 0.071
TIGR00389 147 teiGvsg.kkkgylRPEtAqGiFinFkkllefkreklPFgvaqiGksfRnEisprqgllRvrEFeqaEiefFvdPeekshekFe 229
t++G ++ +++ ++RP + F + +++ + lP q R E ++r + lR+ EF E + v+ ++ e+F+
MMSYN1_0282 96 TKVGEKQlEENLFIRPTSEVVMMDYFSNEINSY-RDLPLIYNQWCNVMRWEKTTRPF-LRTSEFLWQE-GHTVHSSYNEAEDFC 176
888888878888999966666666677777665.579**************999998.6*****9988.577888888888887 PP
== domain 3 score: 23.3 bits; conditional E-value: 6.6e-09
TIGR00389 462 vlrlkpkvaPikvlvlplvnkeelkeiakeiakaLrkeeiiikyddsgs.iGkrYaraDeiGtpfavtiDfetleDetvtlReRdslk.qvRvkieel 557
l l+ k++Pi++ ++ + n e++ ++ + i+ +L++ +i++d+s+ G + a+ G+p + i le++ +t+ Rd+ + + ++ +++
MMSYN1_0282 279 GLVLPSKISPIQIQIIQIKNTEQIDQVVEIIKDKLSDY--RIDVDNSDKsFGFKISEAEIKGIPIRIEIGPRDLENNQITISRRDQQEnKIKIDYKDV 374
4789*******************************987..6777888766**********************************98761457888899 PP
TIGR00389 558 vsalkkl 564
+++++++
MMSYN1_0282 375 KKVVDQM 381
9988775 PP
>> TIGR00442 hisS: histidine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3.4 0.0 0.0097 7.2 2 79 .. 33 113 .. 32 154 .. 0.76
2 ! 15.1 0.0 2.7e-06 0.0021 321 401 .. 285 365 .. 256 369 .. 0.74
Alignments for each domain:
== domain 1 score: 3.4 bits; conditional E-value: 0.0097
TIGR00442 2 aprGtrDllpeeaekrqkveetirevfesygfeeietPilEktellkrkvGeetdivekemYsfedkgg....rslaLRpel 79
+++Gt + p ++++ +++ + e f++ + +++ +P+l +l++++ ++ + + e+ ++++ g+ ++l +Rp
MMSYN1_0282 33 PVKGTMIFRPYGYRIWELIQKYLDEEFKKINVDNVYFPLLIPESLFNKEK-DHIEGFSPEIATVTKVGEkqleENLFIRPTS 113
589*************************************9999999997.5656688888887776652222444566655 PP
== domain 2 score: 15.1 bits; conditional E-value: 2.7e-06
TIGR00442 321 ekkkadvlvvaldeeaeaealklaeklrka..girvevdlegkklkkqlkyadkkgakfvvilgedelekgkvtlkdletgeq 401
+ + +++ ++ ++ + +++ +++e ++++ ++r++vd ++k+++ ++++a+ kg+++ + +g ++le++++t+ + +++e+
MMSYN1_0282 285 KISPIQIQIIQIK--NTEQIDQVVEIIKDKlsDYRIDVDNSDKSFGFKISEAEIKGIPIRIEIGPRDLENNQITISRRDQQEN 365
3444555555553..3445555555555444489*****************************************98777665 PP
>> TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.6 0.2 2.1e-05 0.016 32 74 .. 354 396 .. 352 417 .. 0.79
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 2.1e-05
TIGR03367 32 evtvsgevldeagmvvdfselkkivkevvdklDHallndvlel 74
++t+s + ++e+ + +d++++kk+v ++++ +D al n+ le
MMSYN1_0282 354 QITISRRDQQENKIKIDYKDVKKVVDQMIKDYDLALYNNALEN 396
6899999999999**********************99995542 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (474 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 286 (0.0637255); expected 89.8 (0.02)
Passed bias filter: 101 (0.0225045); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.21
# Mc/sec: 3241.35
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0282 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0283 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0283.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0283/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0283 [L=205]
Description: caulimovirus viroplasmin / ribonuclease HI multi-domain protein 2=Generic DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (205 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 313 (0.0697415); expected 89.8 (0.02)
Passed bias filter: 111 (0.0247326); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1471.94
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0283 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0285 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0285.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0285/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0285 [L=600]
Description: lepA: elongation factor 4 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.3e-295 976.9 11.2 8.4e-295 976.7 11.2 1.0 1 TIGR01393 lepA: elongation factor 4
2e-57 192.7 7.1 1.4e-53 180.0 7.1 3.7 1 TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
5.6e-57 191.3 0.7 4.8e-33 112.2 0.2 3.3 3 TIGR00484 EF-G: translation elongation factor G
7.6e-47 157.8 1.0 7.7e-31 104.9 0.7 3.1 3 TIGR00490 aEF-2: translation elongation factor aEF-2
1.1e-29 101.2 0.4 5.8e-26 88.9 0.2 2.5 2 TIGR00503 prfC: peptide chain release factor 3
1.7e-26 91.1 0.5 1.7e-26 91.1 0.5 1.8 2 TIGR00487 IF-2: translation initiation factor IF-2
2.1e-24 84.1 0.6 4e-24 83.2 0.6 1.3 1 TIGR00475 selB: selenocysteine-specific translation elongati
2.4e-23 80.4 1.5 4.5e-23 79.6 1.5 1.4 1 TIGR00485 EF-Tu: translation elongation factor Tu
7.4e-21 72.6 0.5 1.6e-20 71.5 0.5 1.6 1 TIGR00231 small_GTP: small GTP-binding protein domain
5e-19 66.0 2.4 2.1e-17 60.6 2.4 2.6 1 TIGR00483 EF-1_alpha: translation elongation factor EF-1, su
4.2e-16 57.1 2.0 1.8e-15 55.0 2.0 1.9 1 TIGR03680 eif2g_arch: translation initiation factor 2, gamma
6.2e-15 53.1 4.7 8e-15 52.7 0.6 3.0 3 TIGR02034 CysN: sulfate adenylyltransferase, large subunit
1.8e-10 37.8 1.8 4e-10 36.7 0.2 2.1 2 TIGR00491 aIF-2: translation initiation factor aIF-2
4.8e-10 37.0 0.4 2.9e-09 34.4 0.4 2.1 1 TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
8.2e-06 24.1 0.2 3.4e-05 22.1 0.1 2.1 2 TIGR02528 EutP: ethanolamine utilization protein, EutP
0.001 15.9 0.0 0.002 15.0 0.0 1.4 1 TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation
Domain annotation for each model (and alignments):
>> TIGR01393 lepA: elongation factor 4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 976.7 11.2 3e-297 8.4e-295 2 595 .] 5 599 .. 4 599 .. 1.00
Alignments for each domain:
== domain 1 score: 976.7 bits; conditional E-value: 3e-297
TIGR01393 2 kirnfsiiahidhGkstladrllektkavserelkeqlldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGall 99
kirnfsiiahidhGkstladr+le t++v++re+++qllds+d+ererGitik+++v+lky++kd+++y++nlidtPGhvdf+yevsrslaaceGa+l
MMSYN1_0285 5 KIRNFSIIAHIDHGKSTLADRILELTNTVEKREMQDQLLDSMDIERERGITIKLNSVQLKYHSKDNQDYIFNLIDTPGHVDFTYEVSRSLAACEGAIL 102
89************************************************************************************************ PP
TIGR01393 100 lvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkeieeviGldaeeailvsaktGigieelleaivkkvpaPkgdke.aplkalifd 196
+vda+qGveaqtlanvyla++++leiiPvinkidlPsadv++vk+eiee+iGld+++a l+saktG ++e++l+aiv+++p+P+++ + aplkalifd
MMSYN1_0285 103 VVDASQGVEAQTLANVYLAIDSNLEIIPVINKIDLPSADVDKVKQEIEEIIGLDCSNAPLISAKTGLNVEDVLQAIVERIPSPSDAIDnAPLKALIFD 200
*************************************************************************************98769******** PP
TIGR01393 197 svydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpklvkeeelkaGevGyliagikdvkdvkvGdtitsvkkpakealpGfkkvkpvv 294
s+yd+y Gvv+ +r+++G +++gdkikl+st++eyev+ +g+ tpk+vk++ l+aGevG+++a+ik++kdv+vGdtitsv +pa+e+l+G+kk+kp+v
MMSYN1_0285 201 SYYDKYLGVVMSIRLKQGMLRVGDKIKLMSTNAEYEVTYLGIKTPKIVKKDFLEAGEVGWVAASIKTIKDVNVGDTITSVLNPADEPLEGYKKLKPMV 298
************************************************************************************************** PP
TIGR01393 295 faglyPidsedyeelrdaleklklndasltyekesskalGfGfrcGflGllhleviqerlerefdldliataPsvvykvklkdgevievenPselpee 392
++g+yPid+++y+++++alek++l+d+sl+ye+e+s+alGfGfrcGflGllh+eviqerlere++l+liataPsvvykv+l+++++ie++nP+ lpe+
MMSYN1_0285 299 YCGIYPIDTNKYQDFKEALEKIELSDSSLVYEPETSQALGFGFRCGFLGLLHMEVIQERLEREYNLELIATAPSVVYKVHLTNKQIIELDNPALLPEA 396
************************************************************************************************** PP
TIGR01393 393 ekieeveePyvkatiivpeeylgailelcqekrgvlkkleyldkervelvyelPlaeivldffdklksiskGyasldyelieyresdlvkldillnge 490
+ki+++eeP+v+++i +p+ey+g +++lcq+k g++k++e++d++r l+y++Plaei++dff+klksiskGyas++yeli+y+es+lv++di lnge
MMSYN1_0285 397 QKIAKIEEPFVEIKIATPSEYIGDLMNLCQNKLGIYKNMEVIDNNRRILIYQMPLAEIIFDFFNKLKSISKGYASFEYELIGYKESKLVRMDIKLNGE 494
************************************************************************************************** PP
TIGR01393 491 kvdalsvivhrdkaeekgrklveklkeliprqqfeiaiqaaigakiiaretikalrkdvlakcyGGditrkrkllekqkeGkkrlkeiGkvevPqeaf 588
vda+s+iv ++ a+++g +l+ klkeliprq+fe+++qa+ig+k+i+retika+rkdv+ k++ d +r++kllekqkeGkk++keiG+vevPqeaf
MMSYN1_0285 495 MVDAFSMIVNQKFAYQRGSALTLKLKELIPRQNFEVPVQATIGNKVISRETIKAYRKDVTWKLHAADKSRRKKLLEKQKEGKKKMKEIGTVEVPQEAF 592
************************************************************************************************** PP
TIGR01393 589 lavlkvd 595
+a+lk+d
MMSYN1_0285 593 VAILKID 599
****986 PP
>> TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 180.0 7.1 5e-56 1.4e-53 1 484 [. 6 496 .. 6 512 .. 0.81
Alignments for each domain:
== domain 1 score: 180.0 bits; conditional E-value: 5e-56
TIGR01394 1 irniaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavkykd.....tkinivDtPGhaDfGGevervlsmvdgvll 93
irn +iiah+DhGk tl D++L+ +++++++ e++++++Ds d+ererGiti ++ +ky+ + n++DtPGh Df ev r l +g++l
MMSYN1_0285 6 IRNFSIIAHIDHGKSTLADRILELTNTVEKR-EMQDQLLDSMDIERERGITIKLNSVQLKYHSkdnqdYIFNLIDTPGHVDFTYEVSRSLAACEGAIL 102
8*************************98765.6899*************************9877887899*************************** PP
TIGR01394 94 lvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLfvelgaddeqldfpvvyasakeGvasleeedesedleplfdailehvp 191
+vDas+G+ +qt + a++ +l++i vinkiD p+a++++v +e+ ++ + l++++ l + sak+G+ ++e++++ai+e++p
MMSYN1_0285 103 VVDASQGVEAQTLANVYLAIDSNLEIIPVINKIDLPSADVDKVKQEIEEI-IGLDCSNAPL----I--SAKTGL----------NVEDVLQAIVERIP 183
********************************************998775.5788776543....3..666665..........68899********* PP
TIGR01394 192 aPkad.kdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdiva.vaGledieigetiada 287
+P+ +++pl++l+ yd+ylG ++ r+++G ++ g++++l++++ + e + + + + + +++ +++ e G + a + ++d+++g+ti+++
MMSYN1_0285 184 SPSDAiDNAPLKALIFDSYYDKYLGVVMSIRLKQGMLRVGDKIKLMSTNAEYEVTYL-GIKTPKIVKKDFLEAGEVGWVAAsIKTIKDVNVGDTITSV 280
**87625679************************************99877665443.455566667777777777877654889***********99 PP
TIGR01394 288 eea..ealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteead...kfevsGrGeLhlsiLietmrre.Gfelsvs 379
++ e+l+ k +P + + P+ + k+ + ++ Le+ ++ +l +e +++ f+ G Lh+ ++ e + re el +
MMSYN1_0285 281 LNPadEPLEGYKKLKPMVYCGIY----PIDTN--KY---QDFKEALEKIELSDSSLVYEPETSQAlgfGFRCGFLGLLHMEVIQERLEREyNLELIAT 369
87622567777766776665554....54333..33...466778887667777887776554432224677778**************95589999* PP
TIGR01394 380 kPkvivke..i.......d.......gkkl....ePieeltidvpeefvgavieklgkrkgelkdmeskgsGrvrlefkiPsrgli.Gfrtefltatr 456
P v++k + d +k+ eP+ e++i +p e+ g +++ ++ g k+me + r l +++P +i f +++ + ++
MMSYN1_0285 370 APSVVYKVhlTnkqiielDnpallpeAQKIakieEPFVEIKIATPSEYIGDLMNLCQNKLGIYKNMEVIDNNRRILIYQMPLAEIIfDFFNKLKSISK 467
*****996322111122211222221122133338999*******************************************7665438********** PP
TIGR01394 457 Gegilnrvfdeyeplk.geiekrkkGslv 484
G + + y++ k +++ + +G +v
MMSYN1_0285 468 GYASFEYELIGYKESKlVRMDIKLNGEMV 496
************99886778888888887 PP
>> TIGR00484 EF-G: translation elongation factor G
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 112.2 0.2 1.7e-35 4.8e-33 6 159 .. 2 157 .. 1 184 [. 0.87
2 ! 47.2 0.0 7.9e-16 2.2e-13 302 490 .. 188 384 .. 171 390 .. 0.85
3 ! 28.6 0.0 3.2e-10 8.9e-08 599 677 .. 402 482 .. 390 490 .. 0.86
Alignments for each domain:
== domain 1 score: 112.2 bits; conditional E-value: 1.7e-35
TIGR00484 6 dleklrniGisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattvewkd.....frinlidtPGhvdftveverslrv 98
d +k+rn+ i ahid Gk+t+++ril t+ + k e++d +d+m+ e+erGiti + + +++ + nlidtPGhvdft ev rsl
MMSYN1_0285 2 DKSKIRNFSIIAHIDHGKSTLADRILELTNTVEK-REMQD--QLLDSMDIERERGITIKLNSVQLKYHSkdnqdYIFNLIDTPGHVDFTYEVSRSLAA 96
6789**************************9987.57777..579*************998888877655567699********************** PP
TIGR00484 99 ldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlksrldvna 159
+Ga++v+da +Gve+q+ + a ++ i +nk+d a++ kv++++++ ++++
MMSYN1_0285 97 CEGAILVVDASQGVEAQTLANVYLAIDSNLEIIPVINKIDLPSADVDKVKQEIEEIIGLDC 157
*******************9999999999999*********************99887654 PP
== domain 2 score: 47.2 bits; conditional E-value: 7.9e-16
TIGR00484 302 asddepfvalafkvatdpfvgkltfvrvysGvlksGsevlnsrkekkervgrl.vkm.hankreeieevraGdiaali.GlkdtttGdtlcd..ekae 394
a d++p+ al f d++ g + +r+ +G+l+ G++++ +++ v+ l +k + k++ +e + G +aa i +kd+ Gdt++ + a+
MMSYN1_0285 188 AIDNAPLKALIFDSYYDKYLGVVMSIRLKQGMLRVGDKIKLMSTNAEYEVTYLgIKTpKIVKKDFLEAGEVGWVAASIkTIKDVNVGDTITSvlNPAD 285
6799*********************************************99875554134455556777778888877479*********98224567 PP
TIGR00484 395 vilesmefpePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaG.....mGelhldiivdrlkrefkvevnvGkPqvayretirk 487
le + +P++ + P + ++ ++ al k+ d ++ + ++e++q++ G +G lh+++i +rl re++ e +P v y+ +++
MMSYN1_0285 286 EPLEGYKKLKPMVYCGIYPIDTNKYQDFKEALEKIELSDSSL--VYEPETSQALGFGfrcgfLGLLHMEVIQERLEREYNLELIATAPSVVYKVHLTN 381
78************************************9986..578999999876644445699***************************998887 PP
TIGR00484 488 kae 490
k
MMSYN1_0285 382 KQI 384
765 PP
== domain 3 score: 28.6 bits; conditional E-value: 3.2e-10
TIGR00484 599 llePimkvevevPeeylGdvlGdlsrrrgliegseeresv.kvvkaevPlsem.fGyatdlrsatqGraeysmeflkyaev 677
+ eP +++++ +P+ey+Gd++ +++ g+ + +e ++ +++ ++Pl+e+ f + +l+s ++G a++ e+ y+e
MMSYN1_0285 402 IEEPFVEIKIATPSEYIGDLMNLCQNKLGIYKNMEVIDNNrRILIYQMPLAEIiFDFFNKLKSISKGYASFEYELIGYKES 482
679*******************************9866550566789*****549********************999885 PP
>> TIGR00490 aEF-2: translation elongation factor aEF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 104.9 0.7 2.7e-33 7.7e-31 17 162 .. 4 149 .. 1 181 [. 0.91
2 ! 37.6 0.0 6.3e-13 1.8e-10 287 471 .. 191 381 .. 184 393 .. 0.85
3 ! 12.0 0.0 3.4e-05 0.0096 621 697 .. 402 480 .. 391 490 .. 0.89
Alignments for each domain:
== domain 1 score: 104.9 bits; conditional E-value: 2.7e-33
TIGR00490 17 efirnigivahidhgkttlsdnllagagmiseelageqlfldfdeqeqergitidaanvsm.vheyegneylinlidtpghvdfggdvtramravdga 113
irn i+ahidhgk+tl+d +l + + + +ql ld + e+ergiti+ v + h+ + ++y+ nlidtpghvdf +v+r++ a +ga
MMSYN1_0285 4 SKIRNFSIIAHIDHGKSTLADRILELTNTVEKREMQDQL-LDSMDIERERGITIKLNSVQLkYHSKDNQDYIFNLIDTPGHVDFTYEVSRSLAACEGA 100
67*************************999998877776.7888899************9846999******************************** PP
TIGR00490 114 ivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrlinelkltaeel 162
i+vv+a +gv qt + + a+ n+ + ink+d +++ +e+
MMSYN1_0285 101 ILVVDASQGVEAQTLANVYLAIDSNLEIIPVINKIDLPSADVDKVKQEI 149
***********************************97766666665555 PP
== domain 2 score: 37.6 bits; conditional E-value: 6.3e-13
TIGR00490 287 egplavvitkivvdkhagevavgrlysgaikkgsevylvdskakariqqvgvymgpervevdeipagni....vavvglkeavageticstdk.kika 379
+ pl ++i + dk g v rl g ++ g+++ l++++a + +g+ p+ v+ d + ag++ ++ +k+ g+ti s + ++
MMSYN1_0285 191 NAPLKALIFDSYYDKYLGVVMSIRLKQGMLRVGDKIKLMSTNAEYEVTYLGI-KTPKIVKKDFLEAGEVgwvaASIKTIKDVNVGDTITSVLNpADEP 287
789************************************************8.57************974432346789*********9986615589 PP
TIGR00490 380 feaikhisepvvtvaieakntkdlpklievlrkvakedptvkve..ineetgehlisg.mgelhleiivkkirekagvevetsepivvyretvtg 471
+e+ k++ +p+v i +t+ + e l k+ d ++ e + g + g +g lh+e+i ++ ++++++e++++ p vvy+ +t
MMSYN1_0285 288 LEGYKKL-KPMVYCGIYPIDTNKYQDFKEALEKIELSDSSLVYEpeTSQALGFGFRCGfLGLLHMEVIQERLEREYNLELIATAPSVVYKVHLTN 381
9999987.79****************************99865411344445555555479****************************987775 PP
== domain 3 score: 12.0 bits; conditional E-value: 3.4e-05
TIGR00490 621 lleplqkvfinvpqdlmgaatreiqnrrgqilemkq.egdmvtikakvpvaem.fgfagairgategralwstefagfe 697
+ ep+ + i++p +++g + qn+ g +m+ + + +++ ++p+ae+ f f ++++ ++g a + e g++
MMSYN1_0285 402 IEEPFVEIKIATPSEYIGDLMNLCQNKLGIYKNMEViDNNRRILIYQMPLAEIiFDFFNKLKSISKGYASFEYELIGYK 480
5699******************************973567789999*****9549********************9997 PP
>> TIGR00503 prfC: peptide chain release factor 3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.9 0.2 2.1e-28 5.8e-26 9 165 .. 4 158 .. 1 168 [. 0.91
2 ! 9.9 0.0 0.00018 0.052 385 461 .. 288 368 .. 162 386 .. 0.83
Alignments for each domain:
== domain 1 score: 88.9 bits; conditional E-value: 2.1e-28
TIGR00503 9 dkrrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisittsvlqfdyr.....dklvnlldtpGhedfsedtyrtl 101
+k r+f+ii+h d Gk+tl++++l n+++ ++ ++ d m++e++rGi+i +q++y+ d + nl+dtpGh df+ + r+l
MMSYN1_0285 4 SKIRNFSIIAHIDHGKSTLADRILELTNTVE-------KREMQDQLLDSMDIERERGITIKLNSVQLKYHskdnqDYIFNLIDTPGHVDFTYEVSRSL 94
578********************98877654.......566777889********************9973333367********************* PP
TIGR00503 102 tavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplelldevenelkinta 165
+a + a++v+da++Gve +t + ++ +l i+ +nk+d ++ d ++ +e+e+ +++++
MMSYN1_0285 95 AACEGAILVVDASQGVEAQTLANVYLAIDSNLEIIPVINKIDLPSADVDKVKQEIEEIIGLDCS 158
*************************************************************997 PP
== domain 2 score: 9.9 bits; conditional E-value: 0.00018
TIGR00503 385 ftgipnfapelfrrlrlkdplkqkqllkGlvelseeGavqvlrslden....dlivaavGvlqfdvvvarlkeeynveavy 461
g ++ p ++ + d k+++++ l +++ + v+++ + + + +G l ++v++ rl+ eyn+e +
MMSYN1_0285 288 LEGYKKLKPMVYCGIYPIDTNKYQDFKEALEKIELSDSSLVYEPETSQalgfGFRCGFLGLLHMEVIQERLEREYNLELIA 368
445567788999999999999999**999999999999999999877734444567889******************9765 PP
>> TIGR00487 IF-2: translation initiation factor IF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 91.1 0.5 5.9e-29 1.7e-26 91 294 .. 10 226 .. 2 235 .. 0.82
2 ? -3.2 0.1 2.1 6e+02 33 80 .. 528 576 .. 513 585 .. 0.59
Alignments for each domain:
== domain 1 score: 91.1 bits; conditional E-value: 5.9e-29
TIGR00487 91 timGhvDhGktsLLdsirk..tkvaegea.............GGitqhiGayqvekedkk....kitflDtPGheaftsmrarGakvtDivvlvvaad 169
i+ h+DhGk +L d i + v + e+ Git ++ + q++++ k+ ++DtPGh ft +r + + ++lvv a
MMSYN1_0285 10 SIIAHIDHGKSTLADRILEltNTVEKREMqdqlldsmdiereRGITIKLNSVQLKYHSKDnqdyIFNLIDTPGHVDFTYEVSRSLAACEGAILVVDAS 107
699***********998652234555543222222222222269******9999887666555466889***************************** PP
TIGR00487 170 DGvkpqtieaiehakaanvPiivainkiDkpeanpDrvkqelseyglvpeewGGetifvpvsalkgkgideLldaiLlqseveelkanknkqakgvvi 267
Gv+ qt + a ++n ii +inkiD p+a+ D+vkqe++e + + ++ +sa++g +++++l+ai+ a+ n+ k+ +
MMSYN1_0285 108 QGVEAQTLANVYLAIDSNLEIIPVINKIDLPSADVDKVKQEIEEI--IGLDC---SNAPLISAKTGLNVEDVLQAIVERI-PSPSDAIDNAPLKALIF 199
*****************************************9975..33332...233458**************97443.35679************ PP
TIGR00487 268 eakldkgrGpvatvlvqeGtLkvGDiv 294
+++ dk G v ++ +++G L+vGD +
MMSYN1_0285 200 DSYYDKYLGVVMSIRLKQGMLRVGDKI 226
*************************98 PP
== domain 2 score: -3.2 bits; conditional E-value: 2.1
TIGR00487 33 lllGvmvti.nqvldketielvaeelgvkvevrvtleeeeveeeeedse 80
++ v +ti n+v+ +eti+ +++ k++ + +++ e++++ +
MMSYN1_0285 528 FEVPVQATIgNKVISRETIKAYRKDVTWKLHAADKSRRKKLLEKQKEGK 576
5555666664667788888888888777777666555554444333322 PP
>> TIGR00475 selB: selenocysteine-specific translation elongation factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 83.2 0.6 1.4e-26 4e-24 3 222 .. 9 239 .. 8 251 .. 0.84
Alignments for each domain:
== domain 1 score: 83.2 bits; conditional E-value: 1.4e-26
TIGR00475 3 iataGHvDHGKttLlkaltgid............adrlPeEkKRGltiDlG.....yaylpledkvlgliDvPGHekflknalagvggidaalLvvda 83
+++ H+DHGK tL+ + ++ d + E+ RG+ti l y + + +d+ +liD PGH f ++ ++++ ++a+Lvvda
MMSYN1_0285 9 FSIIAHIDHGKSTLADRILELTntvekremqdqlLDSMDIERERGITIKLNsvqlkYHSKDNQDYIFNLIDTPGHVDFTYEVSRSLAACEGAILVVDA 106
56788*********998766555557888866666667779******97642222277777777********************************** PP
TIGR00475 84 deGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGiee.LkkelknLlesldakdkqkplrla 180
+Gv aqt + ++ +++ +i v++K+D + v++v +e++ei + +sAktG +e+ L+ + +++ da + pl+
MMSYN1_0285 107 SQGVEAQTLANVYLAIDSNLE-IIPVINKIDLPS-ADVDKVKQEIEEIIGLDCSN----APLISAKTGLNVEDvLQAIVERIPSPSDAI-DNAPLKAL 197
********9998888887777.99*******865.55*******99998765544....5679********993455556777777875.799***** PP
TIGR00475 181 iDraFkvKGaGtvvtGtafsGevkvgDelvlepinkkvrvka 222
i + K G+v+ +G +vgD++ l ++n + v
MMSYN1_0285 198 IFDSYYDKYLGVVMSIRLKQGMLRVGDKIKLMSTNAEYEVTY 239
*99999*****************************9998865 PP
>> TIGR00485 EF-Tu: translation elongation factor Tu
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 79.6 1.5 1.6e-25 4.5e-23 14 292 .. 8 276 .. 1 301 [. 0.78
Alignments for each domain:
== domain 1 score: 79.6 bits; conditional E-value: 1.6e-25
TIGR00485 14 nvgtighvdhgkttltaaittvlakegkaaakkydeidkapeekargiti..ntahveyet.ekrhyah..vdcpghadyvknmitgaaqmdgailvv 106
n i h+dhgk+tl+ i + ++ + + ++ + +d+ e++rgiti n+ +++y++ +++ y +d pgh d+ ++ a +gailvv
MMSYN1_0285 8 NFSIIAHIDHGKSTLADRILELTNTVE-KREMQDQLLDSMDIERERGITIklNSVQLKYHSkDNQDYIFnlIDTPGHVDFTYEVSRSLAACEGAILVV 104
8889************99987555544.4455557799999********94456666787625666654339************************** PP
TIGR00485 107 saadgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrellseydfpgddvpivrgsalkalegdaeweekilelmeavdeyiptpe 204
a++g+ qt + la + + +++ +nk+dl + + ++ v+ e+ e++ +++ + p+++ a l ++ ++++a+ e ip+p+
MMSYN1_0285 105 DASQGVEAQTLANVYLAIDSNL-EIIPVINKIDLPSAD--VDKVKQEIEEII---GLDCSNAPLIS--AKTGL--------NVEDVLQAIVERIPSPS 186
*****************99887.688889****98876..789999999997...689999***95..44444........4678899999******* PP
TIGR00485 205 revdkpflla.iedvfsitgrgtvvtgrvergevkvgeeveivglketkkttvtgvemfkklldeakagdnvgvllrgvkk.eeiergqv 292
++d++ l a i d + + g v++ r+++g+++vg++++++ + + t g++ k + ++ +vg + +k ++++ g
MMSYN1_0285 187 DAIDNAPLKAlIFDSYYDKYLGVVMSIRLKQGMLRVGDKIKLMSTNAEYEVTYLGIKTPKIVKKDFLEAGEVGWVAASIKTiKDVNVGDT 276
****877665389***************************************99*98766554443333345555555543255555544 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 71.5 0.5 5.7e-23 1.6e-20 2 161 .. 5 177 .. 4 180 .. 0.84
Alignments for each domain:
== domain 1 score: 71.5 bits; conditional E-value: 5.7e-23
TIGR00231 2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt.................ykvnllDTaGqedfdairrlyvreversle 82
k ++ i++h+d+GKstL +++l+ + ++++ + + ++ ++e+G+t y +nl+DT+G++df + ev+rsl
MMSYN1_0285 5 KIRNFSIIAHIDHGKSTLADRILELTNTVEKREMQDQLLDSMDIERERGITiklnsvqlkyhskdnqdYIFNLIDTPGHVDF-------TYEVSRSLA 95
567788****************9988666666667777778888999999999999999999999*****************.......********* PP
TIGR00231 83 vvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.dlktkvkslfaklnaep..iielsaetgknidklfkl 161
++++ilv+d+++g+e+qt a ++ ii v+nKiDl + d+++ +++ + + + +sa+tg n++++ +
MMSYN1_0285 96 ACEGAILVVDASQGVEAQTLANVYLAIDSNLEIIPVINKIDLPSaDVDKVKQEIEEIIGLDCsnAPLISAKTGLNVEDVLQA 177
***************9999877777777****************98887777666554432223777899999999887665 PP
>> TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 60.6 2.4 7.6e-20 2.1e-17 7 314 .. 6 283 .. 1 293 [. 0.80
Alignments for each domain:
== domain 1 score: 60.6 bits; conditional E-value: 7.6e-20
TIGR00483 7 hlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahk..kf...etdkyevtivdapghrdfi 99
n ++i h+d+gkstl r+l + ++++ +e +++ +ld + ererg+ti + k+ + + y + ++d+pgh df
MMSYN1_0285 6 IRNFSIIAHIDHGKSTLADRILELTNTVEK-------REMQDQ---------LLDSMDIERERGITIKLNSVqlKYhskDNQDYIFNLIDTPGHVDFT 87
34999***************9988776655.......566677.........89*************9875411442224678*************** PP
TIGR00483 100 knmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvgykpdevefipvsaykgdnvvk 197
++ + + a+lvv++++g v++qt v+la ++ +i ink+d d +++k+e+ e+ +g + ++ ++i sa +g nv +
MMSYN1_0285 88 YEVSRSLAACEGAILVVDASQG---VEAQTLANVYLAIDSNLE-IIPVINKIDLPSAD---VDKVKQEIEEI---IGLDCSNAPLI--SAKTGLNVED 173
*******************999...9***********998875.7788****997766...56677777765...69999999986..7788888854 PP
TIGR00483 198 ksenapwykgktllealdkleapekpvd.kplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepagvsgevksiemhheqieqa..epgdnigf 292
l ++++ +p+ +d pl+ i d y +g v r++ g+l++g+k+ + + ev + ++ +i + ++g+
MMSYN1_0285 174 V-----------LQAIVERIPSPSDAIDnAPLKALIFDSYYDKYLGVVMSIRLKQGMLRVGDKIKLMSTNAEYEVTYLGIKTPKIVKKdfLEAGEVGW 260
3...........444456788888877627*************************************9999999999999888875541135567887 PP
TIGR00483 293 nvrgv.skkdirrgdvagdadnp 314
++ + kd++ gd + np
MMSYN1_0285 261 VAASIkTIKDVNVGDTITSVLNP 283
76666245788888877777776 PP
>> TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 55.0 2.0 6.3e-18 1.8e-15 7 250 .. 8 229 .. 2 252 .. 0.80
Alignments for each domain:
== domain 1 score: 55.0 bits; conditional E-value: 6.3e-18
TIGR03680 7 niglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaal 104
n +++ h+DhGk+tl+ + + e++ + l +d+e + +++ ++ + s+ ++ ++D+PGh + + a
MMSYN1_0285 8 NFSIIAHIDHGKSTLADRILELTNTVEKREMQDQL---LDSMDIERERGITIKLNSVQLKY------HSKDNQDYIFNLIDTPGHVDFTYEVSRSLAA 96
7899*************998887777777777665...55566665555555533322222......234445567899******9999988888899 PP
TIGR03680 105 mdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvskekalenyeeikefvkgtvaenapiiPvsalkkvnidvllealekeiptperd 202
+ga+Lv++a++ v ++qt + l i + +i+ v nkidl s + + + +ei+e++ + nap+i sa+ n++ +l+a+ ++ip p+
MMSYN1_0285 97 CEGAILVVDASQGV-EAQTLANV-YLAIDSNLEIIPVINKIDLPSAD-VDKVKQEIEEIIGLDC-SNAPLI--SAKTGLNVEDVLQAIVERIPSPSDA 188
**************.99998775.47788999***********9875.6677789999997777.899995..9**********************99 PP
TIGR03680 203 ldkdalllvarsfdvnkPGteieklkGGviGGslvqGklkvgdeieir 250
d+ +l ++ fd + ++k G v+ l qG l+vgd+i++
MMSYN1_0285 189 IDNAPLKALI--FD-----SYYDKYLGVVMSIRLKQGMLRVGDKIKLM 229
9887765544..55.....5699**********************986 PP
>> TIGR02034 CysN: sulfate adenylyltransferase, large subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.7 0.6 2.8e-17 8e-15 25 152 .. 19 144 .. 8 174 .. 0.80
2 ? -1.1 0.0 0.61 1.7e+02 239 264 .. 215 240 .. 202 291 .. 0.61
3 ? -2.4 0.1 1.5 4.3e+02 278 370 .. 497 587 .. 480 595 .. 0.56
Alignments for each domain:
== domain 1 score: 52.7 bits; conditional E-value: 2.8e-17
TIGR02034 25 kqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitid...vayryfstdkrkfi..vadtPGheqytrnmatgastadlavllvdarkGv 117
k+ l+d++ +l+++ +k+++++ l+d ++ ere+giti v +y s d + +i + dtPGh+ +t ++ + ++++ a+l+vda +Gv
MMSYN1_0285 19 KSTLADRILELTNTVEKREMQD------QLLDSMDIERERGITIKlnsVQLKYHSKDNQDYIfnLIDTPGHVDFTYEVSRSLAACEGAILVVDASQGV 110
5556677777777777777776......5889************6444889*******99884468******************************** PP
TIGR02034 118 leqtrrhsiiasllGikhvvlavnkidlvdydeev 152
+qt ++a + +++ +nkidl d +
MMSYN1_0285 111 EAQTLANVYLAIDSNL-EIIPVINKIDLPSADVDK 144
****999988755444.678889*****8776543 PP
== domain 2 score: -1.1 bits; conditional E-value: 0.61
TIGR02034 239 iasGsvkvGdevvvlpsgresrvari 264
++ G ++vGd+++++ + e +v+ +
MMSYN1_0285 215 LKQGMLRVGDKIKLMSTNAEYEVTYL 240
56799999999999999999988864 PP
== domain 3 score: -2.4 bits; conditional E-value: 1.5
TIGR02034 278 eavtlvledeidisrGdllaaadeapevadqfaaelvwladeallpGksyklklgtkkvrasvaeikhkvdvntlekeaakelelneiglvkl 370
+a ++++++ +rG l+ + +++ ++f++ + + +++++ + ++k+ k v+ ++++ + + lek++ + ++ eig+v++
MMSYN1_0285 497 DAFSMIVNQKFAYQRGSALTLKLKELIPRQNFEVPVQATIGNKVISRE--TIKAYRKDVTWKLHAADKSRRKKLLEKQKEGKKKMKEIGTVEV 587
555666666666666666666666666666666666555544444332..3455555555555555555555555666666666666666665 PP
>> TIGR00491 aIF-2: translation initiation factor aIF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.7 0.2 1.4e-12 4e-10 8 133 .. 10 137 .. 5 152 .. 0.81
2 ? -0.3 0.1 0.23 63 229 271 .. 192 234 .. 161 284 .. 0.76
Alignments for each domain:
== domain 1 score: 36.7 bits; conditional E-value: 1.4e-12
TIGR00491 8 avlGhvdhGkttlldkirk..trvakreaGgitqhiGaseiPid..vikrlcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvvd 101
+++ h+dhGk+tl d+i + v kre + q + + +i + + +l lk + d + + +idtPGh ft r a + ailvvd
MMSYN1_0285 10 SIIAHIDHGKSTLADRILEltNTVEKREMQD--QLLDSMDIERErgITIKLNSVQLKYHSKDNQDYIFNLIDTPGHVDFTYEVSRSLAACEGAILVVD 105
6899*************86324677777665..5555555544322555666666677777777777789**************************** PP
TIGR00491 102 ineGfkpqtveavnilrqlktPfvvaankidr 133
+G++ qt v + + + nkid+
MMSYN1_0285 106 ASQGVEAQTLANVYLAIDSNLEIIPVINKIDL 137
*************99999999999999***97 PP
== domain 2 score: -0.3 bits; conditional E-value: 0.23
TIGR00491 229 gkakGtilevkeekGlGvtidaiiydGilkkgdilvvalkddv 271
++ k i++ +k lGv + + + +G+l+ gd++ +++++
MMSYN1_0285 192 APLKALIFDSYYDKYLGVVMSIRLKQGMLRVGDKIKLMSTNAE 234
55677788888889999999999***********998876644 PP
>> TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.4 0.4 1e-11 2.9e-09 247 362 .. 89 198 .. 2 217 .. 0.73
Alignments for each domain:
== domain 1 score: 34.4 bits; conditional E-value: 1e-11
TIGR03594 247 svlrtlkaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaike 344
v+r +++ ++ ++lv+Da++g++ q l + l+++++ ++ v+NK+Dl +++ +++k+e+ee + l+ ++ iSA+tg +ve++l+ai e
MMSYN1_0285 89 EVSR---SLAACEGAILVVDASQGVEAQTLANVYLAIDSNLEIIPVINKIDLP--SADVDKVKQEIEE-IIGLDCSNAPLISAKTGLNVEDVLQAIVE 180
3444...4555666799**********************************99..99999*****985.55688999999***************999 PP
TIGR03594 345 vyeslskristsklnrvl 362
s s i + l+ ++
MMSYN1_0285 181 RIPSPSDAIDNAPLKALI 198
888888777777776665 PP
>> TIGR02528 EutP: ethanolamine utilization protein, EutP
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.1 0.1 1.2e-07 3.4e-05 17 113 .. 55 148 .. 51 158 .. 0.84
2 ? -2.4 0.0 4.5 1.3e+03 35 48 .. 406 419 .. 395 434 .. 0.83
Alignments for each domain:
== domain 1 score: 22.1 bits; conditional E-value: 1.2e-07
TIGR02528 17 tqaLkgeeikykktqaveykdkaiDtPGeylenrryYsaLlvtaadadvivlvqsatdeesllspgfasifak.eviglvtkidlaeadkeierakel 113
t +L+ ++ky+ +y + iDtPG + +y + +a++ ++v+ s e+++l+ +++i + e i ++ kidl+ ad++ ++k++
MMSYN1_0285 55 TIKLNSVQLKYHSKDNQDYIFNLIDTPGHV--DFTYEVSRSLAACEGAILVVDASQGVEAQTLANVYLAIDSNlEIIPVINKIDLPSADVD--KVKQE 148
66899999****9999************74..344555666789999999999999999***********9999************76654..44444 PP
== domain 2 score: -2.4 bits; conditional E-value: 4.5
TIGR02528 35 ykdkaiDtPGeyle 48
+ + +i tP ey+
MMSYN1_0285 406 FVEIKIATPSEYIG 419
5677899*****86 PP
>> TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.0 7e-06 0.002 82 170 .. 92 185 .. 76 201 .. 0.78
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 7e-06
TIGR03918 82 evlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke..keklekkke...eevvlvsakekegieelkealiellpee 170
+ l+ ++ a+lvvda++++e++ + + + + ++ +i v+nkidl +++ + k+++e+ + +++ l+sak++ ++e++ +a++e++p+
MMSYN1_0285 92 RSLAACEGAILVVDASQGVEAQTLANVYLAIDSNLEIIPVINKIDLPSADVDkvKQEIEEIIGldcSNAPLISAKTGLNVEDVLQAIVERIPSP 185
56788999*********99999999999999**************998765544444444433111566789*****************99765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (600 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 199 (0.0443405); expected 89.8 (0.02)
Passed bias filter: 96 (0.0213904); expected 89.8 (0.02)
Passed Vit filter: 24 (0.00534759); expected 4.5 (0.001)
Passed Fwd filter: 16 (0.00356506); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 16 [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.25
# Mc/sec: 3446.50
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0285 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0286 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0286.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0286/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0286 [L=268]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (268 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 212 (0.0472371); expected 89.8 (0.02)
Passed bias filter: 101 (0.0225045); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1832.66
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0286 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0287 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0287.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0287/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0287 [L=574]
Description: aspRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.5e-211 699.4 10.3 8.5e-211 699.3 10.3 1.0 1 TIGR00459 aspS_bact: aspartate--tRNA ligase
1.5e-65 219.8 3.6 4.6e-50 168.8 3.5 2.2 2 TIGR00458 aspS_nondisc: aspartate--tRNA(Asn) ligase
2.3e-48 163.0 7.2 7.8e-36 121.7 6.7 2.1 2 TIGR00499 lysS_bact: lysine--tRNA ligase
3.9e-39 132.7 1.2 3.3e-26 90.1 0.7 2.2 2 TIGR00457 asnS: asparagine--tRNA ligase
4.4e-26 90.0 0.0 4.5e-15 53.8 0.1 2.3 2 TIGR00462 genX: EF-P lysine aminoacylase GenX
0.00019 18.5 2.5 0.014 12.3 0.0 3.3 4 TIGR00442 hisS: histidine--tRNA ligase
0.0026 15.0 0.9 1.7 5.8 0.1 3.7 3 TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
0.0033 14.7 0.3 0.12 9.7 0.0 3.1 4 TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal r
Domain annotation for each model (and alignments):
>> TIGR00459 aspS_bact: aspartate--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 699.3 10.3 1.5e-213 8.5e-211 1 585 [. 1 574 [] 1 574 [] 0.98
Alignments for each domain:
== domain 1 score: 699.3 bits; conditional E-value: 1.5e-213
TIGR00459 1 fkrtsyigelkekslgkkvtlaGWverrkdlGeliFidlrDkegivqvvsdkkkealelakelrnedvvqvkgkvslreeesknrnldtgeievlaee 98
+krt+++gel+ ++++++v+l+GWv+++++lG ++Fidl+D+ gi q+v +++ + +l+++++ne+v+++kg+v++r+ s+n++l tg+iev+ +e
MMSYN1_0287 1 MKRTHTCGELTIDNIDQEVILQGWVKKIRKLGAMVFIDLKDRYGITQLVIEQE--NIDLINNVKNEYVIEIKGNVVKRK--SINKELVTGDIEVIVKE 94
6899***********************************************99..8889****************8888..99*************** PP
TIGR00459 99 itvlnkskkkPleie.kkeaeeevrlkyRYLdLRrpkmqqrlklRskvtkavRnflddkgFleietPiLtkatPeGardyLvPsRvkkgefyaLpqsP 195
+ ++nks+ +P+++e + +++e+ rl yRYLdLRr+ mq++l R+k+ +++Rnfl d +Fle+etP +k+tPeGard+LvPsR++k++fyaLpqsP
MMSYN1_0287 95 LFIINKSELTPFVLEnDVNVNEDTRLTYRYLDLRRQVMQNNLIIRAKINHIIRNFLTDLNFLEVETPYFAKSTPEGARDFLVPSRLNKNKFYALPQSP 192
**************98899******************************************************************************* PP
TIGR00459 196 qlfkqLLmvsGvdkYyqiarcfRDeDlRaDRqPeftqiDlemsFlnqedvmelveklvsevfkevkkidlkkkfpvltyeeameryGsDkPDlRfele 293
qlfkqLLm+sG+d+Yyqi+rcfRDeDlR DRqPeftq+DlemsF+++edvm++ e+l+++++kevk+ ++k+++ +l y++a++ yGsDkPDlR++l+
MMSYN1_0287 193 QLFKQLLMISGIDRYYQIVRCFRDEDLRIDRQPEFTQLDLEMSFATSEDVMQISESLIKKILKEVKNFEIKEPLLRLSYKDAIDLYGSDKPDLRYDLK 290
************************************************************************************************** PP
TIGR00459 294 lidvadllkdkefkvFsklieakgivkaievkegaaelsrksikelrklakengakglaylkvkekaklevksaikkflkekklkkllertdakegdl 391
+ d++k+++ k ++ + +++ai + + ls+k++++l++ ak++ +++a++k+++++ +++++ +l e++ + l++ d k++
MMSYN1_0287 291 IHTLNDIFKNTNIKFLNN---PDLFIRAICIDQL---LSKKQLEDLNQQAKQFSFNSIAFIKFEDNN---WSGSLASQLTENEKELLIKEFDIKNKAT 379
************666554...4889999999888...****************************99...99************************** PP
TIGR00459 392 llvgadkkklvldalgalrlklkkdldlvdedafsflwvvdfPlyekd.eekrlvaahhpFtspkeedleklekapeealaeayDlvlnGvelGgGsi 488
+++ +k + + + +ga+r +l+k +l +d f++lwvvdfPl+e+ +e+r+vaahhpFtspkee l ++++++++ala ayDlv+nG+e+GgGs
MMSYN1_0287 380 IILNIGKYAEISQLMGAIRISLAKMFNLETKDDFKLLWVVDFPLFEFSeQENRYVAAHHPFTSPKEECLTDFDTNKKDALACAYDLVMNGFEIGGGSQ 477
***********************************************999************************************************ PP
TIGR00459 489 RihdkelqekvfeilgideeearekFgflleafeyGaPphaGlalGlDRlvmllaetdsiRdviaFPktakaaellteaPskvdekqleelsikvvk 585
Ri ++e+q+++f+ +++ ++ + +Fg++++a++yGaP haG+a GlDR+ m+l++++siRdviaFPk+ +++++ +aP+ v+ekqleel+ik vk
MMSYN1_0287 478 RITNPEIQQRMFDAVELTAKQVETNFGWFMNAYKYGAPYHAGIAWGLDRISMILTDSNSIRDVIAFPKNSLGIDMMSNAPDLVSEKQLEELNIKIVK 574
**********************************************************************************************887 PP
>> TIGR00458 aspS_nondisc: aspartate--tRNA(Asn) ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 168.8 3.5 8.2e-53 4.6e-50 12 255 .. 16 259 .. 7 297 .. 0.90
2 ! 48.8 0.0 2.1e-16 1.2e-13 336 422 .. 456 546 .. 433 550 .. 0.90
Alignments for each domain:
== domain 1 score: 168.8 bits; conditional E-value: 8.2e-53
TIGR00458 12 gkevllrgwvheirdlGalifvllrdregliqilvkkkkvskelfklikklkkesvvavkGkvk.....ekekapqgleiipeklevlneakeplPld 104
+ev+l+gwv +ir+lGa++f+ l+dr g+ q +++++ + li+++k+e v+ +kG+v +ke ++++e+i+++l ++n+++ P+
MMSYN1_0287 16 DQEVILQGWVKKIRKLGAMVFIDLKDRYGITQLVIEQEN-----IDLINNVKNEYVIEIKGNVVkrksiNKELVTGDIEVIVKELFIINKSE-LTPFV 107
49*******************************987665.....5689999**********9976777677888999************986.5699* PP
TIGR00458 105 leekveaeldtrldarfldlrrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeityfereaf..laqsPqlykqvllaagle 200
le+ v+ + dtrl +r+ldlrr q + ir+++ + +r+fl++ +f+ev+tP + s+ eG + + + ++++ f l qsPql+kq+l+ +g++
MMSYN1_0287 108 LENDVNVNEDTRLTYRYLDLRRQVMQNNLIIRAKINHIIRNFLTDLNFLEVETPYFAKSTPEGARDFLVPSRLNKNKFyaLPQSPQLFKQLLMISGID 205
*****************************************************************99988999888884667**************** PP
TIGR00458 201 rvyeiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvae 255
r y+i fr e+ r e++ +d+em+f+ +dv++i e l+++++++v++
MMSYN1_0287 206 RYYQIVRCFRDEDLRIDRQ-PEFTQLDLEMSFATSEDVMQISESLIKKILKEVKN 259
***************9997.8******************************9975 PP
== domain 2 score: 48.8 bits; conditional E-value: 2.1e-16
TIGR00458 336 nPeisksfdllyrdleissGaqrihdydllvekikakGlePe....slksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPrd 422
+ + ++dl++++ ei G+qri + ++ + a l + + +++a+kyG P haG G++r+ m+l+d + ir+++ fP++
MMSYN1_0287 456 KDALACAYDLVMNGFEIGGGSQRITNPEIQQRMFDAVELTAKqvetNFGWFMNAYKYGAPYHAGIAWGLDRISMILTDSNSIRDVIAFPKN 546
4556789*********************9999988888877655578999***************************************86 PP
>> TIGR00499 lysS_bact: lysine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 121.7 6.7 1.4e-38 7.8e-36 49 305 .. 12 282 .. 2 370 .. 0.82
2 ! 39.9 0.0 8.7e-14 4.9e-11 400 491 .. 458 545 .. 437 547 .. 0.82
Alignments for each domain:
== domain 1 score: 121.7 bits; conditional E-value: 1.4e-38
TIGR00499 49 leekelevsiaGRikakRsmgkatFitlqdesgklqlyvnkdklsedveeleeklld.lGDiigvkGklkktktgelsvkveelklltkalr.plPek 144
++ ++ev ++G +k +R g ++Fi+l+d g ql+++++++ + ++e++++ +G++++ k k+ tg + v+v+el ++ k+ p +
MMSYN1_0287 12 IDNIDQEVILQGWVKKIRKLGAMVFIDLKDRYGITQLVIEQENIDLINNVKNEYVIEiKGNVVKRKSINKELVTGDIEVIVKELFIINKSELtPFVLE 109
4556899***********************************997666666666655379***************************99865133334 PP
TIGR00499 145 fhGlkdqEtryrkRylDlivnkesrqtflkRskiikaiRkfldergflEvEtPil.qsisgGAsAkPFithhnaldvdly.lRiApElyLKrLivgGl 240
+++tr RylDl +++ +++R+ki + iR+fl + +flEvEtP + +s + G A+ F + + ++y l p l+ + L+++G+
MMSYN1_0287 110 NDVNVNEDTRLTYRYLDLRRQ-VMQNNLIIRAKINHIIRNFLTDLNFLEVETPYFaKSTPEG--ARDFLVPSRLNKNKFYaLPQSPQLFKQLLMISGI 204
44346999**********987.8999***************************972466777..689999998888888868899****999****** PP
TIGR00499 241 ekvyEigrvFRnEGvdttHnpEFttiElYqayadyedllelteellktlvkellgtlki..............kykeee 305
++ y i r FR E + pEFt ++l +++a+ ed+++ +e+l+k+++ke++ +++i y+ +
MMSYN1_0287 205 DRYYQIVRCFRDEDLRIDRQPEFTQLDLEMSFATSEDVMQISESLIKKILKEVK-NFEIkepllrlsykdaidLYGSDK 282
*****************************************************9.666646666666665555334444 PP
== domain 2 score: 39.9 bits; conditional E-value: 8.7e-14
TIGR00499 400 elteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDedfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFpa 491
l+ ++l ++g Ei+ + + ++ p+ q++ f++ + ++ ++ f++a +yG p +G+ G+DR+ m+ltds+sirdv++Fp+
MMSYN1_0287 458 ALACAYDLVMNGFEIGGGSQRITNPEIQQRMFDAVEL----TAKQVETNFGWFMNAYKYGAPYHAGIAWGLDRISMILTDSNSIRDVIAFPK 545
5666788888999999999999999999888876543....333333344579*************************************96 PP
>> TIGR00457 asnS: asparagine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.1 0.7 5.8e-29 3.3e-26 14 266 .. 14 259 .. 6 305 .. 0.86
2 ! 41.3 0.0 3.6e-14 2e-11 359 450 .. 453 547 .. 340 552 .. 0.88
Alignments for each domain:
== domain 1 score: 90.1 bits; conditional E-value: 5.8e-29
TIGR00457 14 avdeevkvsgWvktkRsskkiaFlelrDGsslkalqavikkeleeeleqelkklttgssvsvsgkvve..spkkk...qelElkvkkievvgeaeeed 106
++d+ev ++gWvk++R + + F++l+D + q vi++e + +++++ + + ++g+vv+ s +k+ ++E+ vk++ ++++ e
MMSYN1_0287 14 NIDQEVILQGWVKKIRKLGAMVFIDLKDRY--GITQLVIEQE----NIDLINNVKNEYVIEIKGNVVKrkSINKElvtGDIEVIVKELFIINKSELTP 105
6799************************98..77899**995....356899**************995333333555789**************999 PP
TIGR00457 107 yplqkkehsle.flrelahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvktegvdfskdffgkeayLtvsgqlel 203
+ l++ + e ++ ++L lR ++++ l +R+++++ i+++ ++ +f++v+tP +++s +EGa + + + +++f+ L +s ql
MMSYN1_0287 106 FVLENDVNVNEdTRLTYRYLDLRRQVMQNNLIIRAKINHIIRNFLTDLNFLEVETPYFAKSTPEGARDFLVPSRLN---KNKFYA----LPQSPQLFK 196
99999885554156689**************************************************987777333...667775....99****988 PP
TIGR00457 204 Ealala.lskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavle 266
l+++ +++ y + +FR E+ R Ef+ ++ E++F++ ed +q+ e+lik+i+k+v +
MMSYN1_0287 197 QLLMISgIDRYYQIVRCFRDEDLRIDRQ-PEFTQLDLEMSFATSEDVMQISESLIKKILKEVKN 259
87655439******************97.7******************************9965 PP
== domain 2 score: 41.3 bits; conditional E-value: 3.6e-14
TIGR00457 359 qnddektvaavDllvPkiGEiiGGseReddldkLeerlkeegldte....elkWyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpRta 450
+n+++ a Dl++ ++ Ei GGs+R+ + + ++ + + +l + ++ W+++ kyG h+G Gl+R+ lt+ + ird+i fp+ +
MMSYN1_0287 453 TNKKDALACAYDLVMNGF-EIGGGSQRITNPEIQQRMFDAVELTAKqvetNFGWFMNAYKYGAPYHAGIAWGLDRISMILTDSNSIRDVIAFPKNS 547
567777778889988776.***********99999999999987653334688****************************************976 PP
>> TIGR00462 genX: EF-P lysine aminoacylase GenX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 53.8 0.1 8e-18 4.5e-15 3 166 .. 138 305 .. 136 361 .. 0.79
2 ! 34.0 0.0 8.6e-12 4.8e-09 212 304 .] 455 543 .. 434 543 .. 0.85
Alignments for each domain:
== domain 1 score: 53.8 bits; conditional E-value: 8e-18
TIGR00462 3 krakllaaiRafFaergvlEvetpllseapvtdvhlealktelleeekekeklyLqtSPEyamKrLLaagsgkifqlakvfRneergrlHnpEFtmLE 100
rak+ + iR+f+++ ++lEvetp +++++ + + + ++ ++++ + L SP + L+ +g + +q+ ++fR+e+ +pEFt L+
MMSYN1_0287 138 IRAKINHIIRNFLTDLNFLEVETPYFAKSTPEGARDFLVPSR----LNKNKFYALPQSPQLFKQLLMISGIDRYYQIVRCFRDEDLRIDRQPEFTQLD 231
699***********************9998776654444554....345666669*****99999999****************************** PP
TIGR00462 101 wYrvgadleelmeeveellqevle.....deeaeverlsyaeaferylgidplta...sleelkeaaekageaa 166
a+ e++m+ e+l++++l+ + ++++ rlsy++a+ y + +p + ++l+++ ++++ +
MMSYN1_0287 232 LEMSFATSEDVMQISESLIKKILKevknfEIKEPLLRLSYKDAIDLYGSDKPDLRydlKIHTLNDIFKNTNIKF 305
************************99999889999999999999988877763323446667777766666333 PP
== domain 2 score: 34.0 bits; conditional E-value: 8.6e-12
TIGR00462 212 ddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpecsGvAlGlDRLlmlalgaesieevlaf 304
+++ +A ++l ++g E++ g + +t+++ q++ f++ + + k+ +++ +++a + g p +G+A GlDR+ m++++++si++v+af
MMSYN1_0287 455 KKDALACAYDLVMNGFEIGGGSQRITNPEIQQRMFDAVELTAKQVETNF----GWFMNAYKYGAPYHAGIAWGLDRISMILTDSNSIRDVIAF 543
4455899999**********************99998776665444333....57***********************************997 PP
>> TIGR00442 hisS: histidine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.8 0.2 2 1.1e+03 145 185 .. 38 76 .. 34 87 .. 0.70
2 ? 3.6 0.0 0.012 6.5 9 42 .. 131 164 .. 128 167 .. 0.88
3 ! 12.3 0.0 2.5e-05 0.014 97 158 .. 204 268 .. 194 305 .. 0.75
4 ? 0.2 0.0 0.12 68 300 320 .. 519 539 .. 513 564 .. 0.86
Alignments for each domain:
== domain 1 score: -3.8 bits; conditional E-value: 2
TIGR00442 145 elleelglkevtleinslgilegrlelsyreallryldkkl 185
+l ++ g++++++e ++ +++++++ +y +++ + k +
MMSYN1_0287 38 DLKDRYGITQLVIEQENIDLINNVKN-EYVIEIKGNVVK-R 76
55677889999999999999999988.666666655555.4 PP
== domain 2 score: 3.6 bits; conditional E-value: 0.012
TIGR00442 9 llpeeaekrqkveetirevfesygfeeietPilE 42
+++++ ++r+k+ ++ir+ +++ +f e+etP +
MMSYN1_0287 131 VMQNNLIIRAKINHIIRNFLTDLNFLEVETPYFA 164
567788999**********************995 PP
== domain 3 score: 12.3 bits; conditional E-value: 2.5e-05
TIGR00442 97 pfklyyigpvFRyErpqkGRyRqFhQldvevvGses...pladaeiialaaelleelglkevtle 158
++y+i ++FR E R+ +F+Qld e+ ++s +++ +i+ + + ++++++ke l+
MMSYN1_0287 204 IDRYYQIVRCFRDEDLRIDRQPEFTQLDLEMSFATSedvMQISESLIKKILKEVKNFEIKEPLLR 268
5699**************************86444412234555555555555556666665554 PP
== domain 4 score: 0.2 bits; conditional E-value: 0.12
TIGR00442 300 GfaiGieRllllleeegllee 320
G+a G++R+ ++l +++ +++
MMSYN1_0287 519 GIAWGLDRISMILTDSNSIRD 539
9************99887765 PP
>> TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.6 0.0 0.014 7.9 182 208 .. 206 232 .. 197 270 .. 0.80
2 ! 5.8 0.1 0.003 1.7 230 256 .. 425 450 .. 413 488 .. 0.74
3 ? 1.2 0.0 0.072 41 287 311 .. 518 540 .. 508 549 .. 0.85
Alignments for each domain:
== domain 1 score: 3.6 bits; conditional E-value: 0.014
TIGR00468 182 rifsigrvfRrdavdatHlpeFhQveg 208
r+ i r+fR ++ peF+Q+++
MMSYN1_0287 206 RYYQIVRCFRDEDLRIDRQPEFTQLDL 232
777899******************986 PP
== domain 2 score: 5.8 bits; conditional E-value: 0.003
TIGR00468 230 klfgetevrfrpsyfPfTepSvEvdvk 256
++ + +e r+ +++ PfT p E+
MMSYN1_0287 425 EFSE-QENRYVAAHHPFTSPKEECLTD 450
4544.699************9998655 PP
== domain 3 score: 1.2 bits; conditional E-value: 0.072
TIGR00468 287 kvlafGlgieRlamlkygikdiRdl 311
++a+G ++R+ m+ + + iRd
MMSYN1_0287 518 AGIAWG--LDRISMILTDSNSIRDV 540
688997..59************986 PP
>> TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.1 0.0 0.84 4.7e+02 35 80 .. 57 102 .. 47 120 .. 0.62
2 ? -0.2 0.0 0.22 1.2e+02 29 52 .. 140 163 .. 116 169 .. 0.74
3 ! 9.7 0.0 0.00021 0.12 106 180 .. 206 279 .. 178 287 .. 0.82
4 ? -0.4 0.0 0.25 1.4e+02 206 227 .. 518 539 .. 488 546 .. 0.85
Alignments for each domain:
== domain 1 score: -2.1 bits; conditional E-value: 0.84
TIGR02367 35 lakalvdrGfvevkspiliskellekmtideddelfkqvfrvdekk 80
l + ++++ +e+k ++ k++ + + ++ + + k++f ++++
MMSYN1_0287 57 LINNVKNEYVIEIKGNVVKRKSINKELVTGDIEVIVKELFIINKSE 102
5555666667777777665555444454455556677777776654 PP
== domain 2 score: -0.2 bits; conditional E-value: 0.22
TIGR02367 29 lklerelakalvdrGfvevkspil 52
+k+++ + ++l+d f+ev++p +
MMSYN1_0287 140 AKINHIIRNFLTDLNFLEVETPYF 163
4678889999**********9965 PP
== domain 3 score: 9.7 bits; conditional E-value: 0.00021
TIGR02367 106 rifeiGscyrkesdGsehleeftmlnlvelGspeeerrerleelikevleelGideyeleade.svvyGdtvdvmk 180
r ++i c+r e + eft l+l + e + e+lik++l+e+ +++e+++ + y d++d+
MMSYN1_0287 206 RYYQIVRCFRDEDLRIDRQPEFTQLDLEMSFATSEDVMQISESLIKKILKEV--KNFEIKEPLlRLSYKDAIDLYG 279
7899**********************97766668888888999******986..6799987642578888888765 PP
== domain 4 score: -0.4 bits; conditional E-value: 0.25
TIGR02367 206 vGlGfGlerllkvredtknvrs 227
G+ +Gl+r+ ++ d + +r
MMSYN1_0287 518 AGIAWGLDRISMILTDSNSIRD 539
699***********99999986 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (574 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 210 (0.0467914); expected 89.8 (0.02)
Passed bias filter: 107 (0.0238414); expected 89.8 (0.02)
Passed Vit filter: 17 (0.00378788); expected 4.5 (0.001)
Passed Fwd filter: 8 (0.00178253); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.23
# Mc/sec: 3583.86
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0287 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0288 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0288.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0288/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0288 [L=414]
Description: hisRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-127 422.9 5.9 3.5e-127 422.7 5.9 1.0 1 TIGR00442 hisS: histidine--tRNA ligase
6.3e-50 168.0 0.7 2e-48 163.0 0.7 2.1 1 TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, re
9.2e-10 36.0 1.7 1.4e-07 28.8 0.3 2.4 2 TIGR00418 thrS: threonine--tRNA ligase
4.7e-05 20.8 0.3 0.00087 16.6 0.3 2.3 2 TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal r
0.00013 19.3 1.2 0.0026 15.0 0.0 2.9 3 TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
Domain annotation for each model (and alignments):
>> TIGR00442 hisS: histidine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 422.7 5.9 3.9e-130 3.5e-127 1 404 [. 3 404 .. 3 406 .. 0.98
Alignments for each domain:
== domain 1 score: 422.7 bits; conditional E-value: 3.9e-130
TIGR00442 1 qaprGtrDllpeeaekrqkveetirevfesygfeeietPilEktellkrkvGeetdivekemYsfedkggrslaLRpelTapvvRavvenklelkk.. 96
q+prGt+D++ +ea++++kve++++e++++++++ei+tP++E+ el+ r++G +tdiv+kemY+f dk++rsl L+pe+Ta+vvRav+enkl++++
MMSYN1_0288 3 QKPRGTQDFFLDEAKLWNKVETKLKEILDQFNYSEIRTPMFESKELFIRSIGSTTDIVSKEMYEFVDKKNRSLVLKPEGTASVVRAVIENKLYKEEnl 100
79******************************************************************************************999988 PP
TIGR00442 97 pfklyyigpvFRyErpqkGRyRqFhQldvevvGsespladaeiialaaelleelglke.vtleinslgilegrlelsyreallryldkkldklgedsv 193
p+k+yyi p+FRyErpq+GRyRqFhQl++ev+Gs+s+++d e++++a++++++++l+e +++ n l + ++r++ y +l++yl kl++d++
MMSYN1_0288 101 PLKVYYISPMFRYERPQNGRYRQFHQLGIEVFGSDSIQQDYEVLNIATKIINQFKLNEnIKIYTNFLITGKNRED--YILELKKYLSD--FKLCNDCN 194
9*******************************************************888****************..**********9..89****** PP
TIGR00442 194 rrleknplrildskaeklkellkeapkildflkeesleeleelkelLkalgikykidpslvRGLdYYtgtvFEvvldelgaqgsvcgGGrYDnLveel 291
+rleknplr+ld+k+++ + +k+ p+++dfl++e+++++++ el+k+ +i++ d +lvRGLdYYtg++FE++ + ++++++++GGrY+nLv+e+
MMSYN1_0288 195 TRLEKNPLRVLDCKIDDKQ--FKNVPSMQDFLTKEQKTRYDQTLELFKKTNISVIHDDKLVRGLDYYTGFIFEIKYLNNNNEQTIIAGGRYNNLVNEI 290
****************988..8999************************************************************************* PP
TIGR00442 292 ggekvpavGfaiGieRllllleeegllee.ekkkadvlvvaldeeaeaealklaeklrkagirvevdlegkklkkqlkyadkkgakfvvilgedelek 388
g+ ++ a+Gf++G+eR +++++e++ +k+++d++ +++d+ a + +++++ r+ g++++ ++ + +lk++lk+adk + k+v+ilg++e+++
MMSYN1_0288 291 GNINLAACGFGMGLERFINIIKEQNSSLVnQKTNIDLYTICIDDLAIELNQQILDLTRSIGLKADSNYYHLSLKSALKKADKLNPKYVIILGSNEAKT 388
************************9999989******************************************************************* PP
TIGR00442 389 gkvtlkdletgeqeev 404
+++ +kd +++q ++
MMSYN1_0288 389 NEFIIKDQINKTQIKT 404
**********999876 PP
>> TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 163.0 0.7 2.3e-51 2e-48 2 312 .. 10 311 .. 9 313 .. 0.85
Alignments for each domain:
== domain 1 score: 163.0 bits; conditional E-value: 2.3e-51
TIGR00443 2 dvlpeeaakkeeierkleklfaswGYqeietPvlEylevllaklg....dleekvfklvdskgrvLaLRpdmTasiaRavstr..lkdqelplRlsya 93
d++ +ea+ +++e+kl++++ ++ Y+ei tP++E e++ ++ g + +++++++vd+k+r L+L+p+ Tas++Rav ++ k+++lpl+++y
MMSYN1_0288 10 DFFLDEAKLWNKVETKLKEILDQFNYSEIRTPMFESKELFIRSIGsttdIVSKEMYEFVDKKNRSLVLKPEGTASVVRAVIENklYKEENLPLKVYYI 107
88999***********************************7766542345689*************************996652368899******** PP
TIGR00443 94 gkvfraeekergksreftQvGvEliGaksleaDaEvialaleaLealglkelkvelGhvglvrelleelglpeeareelrealerkdlvaleelvaea 191
++ fr+e++++g++r+f+Q+G+E++G++s++ D Ev+ +a++++++ +l+e ++++++++l + + e+ el+++l++ +l +
MMSYN1_0288 108 SPMFRYERPQNGRYRQFHQLGIEVFGSDSIQQDYEVLNIATKIINQFKLNE------NIKIYTNFLITGKNREDYILELKKYLSDFKLCN-------- 191
*************************************************66......567888888887777888888888887765543........ PP
TIGR00443 192 elkeeakekllaLprlrGkpeevleelaklagsesakaaldeLeavlellealgveeevslDlglvrglhYYtGliFevya..eglgaalagGGRYDe 287
+ +++++++ l+++++ ++ ++++ ++++ + k+ ++ +++lel +++ ++ v D lvrgl+YYtG iFe+ ++ ++++ GGRY +
MMSYN1_0288 192 DCNTRLEKNPLRVLDCKI-DDKQFKNVPSMQDFLT-KEQKTRYDQTLELFKKTNIS--VIHDDKLVRGLDYYTGFIFEIKYlnNNNEQTIIAGGRYNN 285
445666666667777666.4444455544444444.4558999999******9999..99******************95547888999********* PP
TIGR00443 288 Llkaf.gealpavGfalnlerlleal 312
L+++ + +l+a Gf ++ler ++++
MMSYN1_0288 286 LVNEIgNINLAACGFGMGLERFINII 311
*****8889************98776 PP
>> TIGR00418 thrS: threonine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.8 0.3 1.5e-10 1.4e-07 202 353 .. 17 164 .. 5 193 .. 0.81
2 ! 6.2 0.0 0.0011 0.95 482 561 .. 334 413 .. 298 414 .] 0.76
Alignments for each domain:
== domain 1 score: 28.8 bits; conditional E-value: 1.5e-10
TIGR00418 202 lirklledfvrekllkrgyeevetPiladlelweis..ghldkykermfrfkeeeekelvlkpmnCpghi.lifksslrsyrdLPlrlaelgvvhRyE 296
++ + +e+ ++e l +++y+e++tP+ ++el+ s d + +m++f +++++lvlkp + ++ +++l+ +LPl+++ ++ ++RyE
MMSYN1_0288 17 KLWNKVETKLKEILDQFNYSEIRTPMFESKELFIRSigSTTDIVSKEMYEFVDKKNRSLVLKPEGTASVVrAVIENKLYKEENLPLKVYYISPMFRYE 114
5667788888899999***************9965522678999*******************8777666258899999999**************** PP
TIGR00418 297 ksGeLvGLkRvRgftldDaHifct.edQikeEiknalrliqkvlkklglseekvelst 353
+ R R+f + +f + Q + E +l++++k++++++l+ e++++ t
MMSYN1_0288 115 RPQN----GRYRQFHQLGIEVFGSdSIQQDYE---VLNIATKIINQFKLN-ENIKIYT 164
8654....49999*999999998744444444...567788999999997.6666554 PP
== domain 2 score: 6.2 bits; conditional E-value: 0.0011
TIGR00418 482 ekhldyakkvaeklkkegirvdvddrneklgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleellekv 561
+ + +++ + ++ g+++d + + +l+ +++a k yv+++G +E+++++ ++++ ++ + k +l+++++ +
MMSYN1_0288 334 DLAIELNQQILDLTRSIGLKADSNYYHLSLKSALKKADKLNPKYVIILGSNEAKTNEFIIKDQINKTQIKTTLTKFIKYL 413
4444555555555556667777777777777778888888889********************************99976 PP
>> TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.6 0.3 9.7e-07 0.00087 29 161 .. 20 158 .. 9 175 .. 0.78
2 ? 1.6 0.0 0.037 34 201 223 .. 293 315 .. 284 337 .. 0.72
Alignments for each domain:
== domain 1 score: 16.6 bits; conditional E-value: 9.7e-07
TIGR02367 29 lklerelakalvdrGfvevkspiliskellekmtideddelfkqvfr.vde...kkclrpmlapnlyn..llrkldrllekpirifeiGscyrkesdG 120
k+e +l ++l + + e+++p++ skel+ + + d ++k+++ vd+ + l+p + ++ + +kl + + p++++ i + +r e
MMSYN1_0288 20 NKVETKLKEILDQFNYSEIRTPMFESKELFIRSIGSTTDIVSKEMYEfVDKknrSLVLKPEGTASVVRavIENKLYKEENLPLKVYYISPMFRYERPQ 117
689*************************98775545555566666642444111567899765555431145789999999***************** PP
TIGR02367 121 sehleeftmlnlvelGspeeerrerleelikevleelGide 161
+ +f l + +Gs ++ ++ +++++++++ ++e
MMSYN1_0288 118 NGRYRQFHQLGIEVFGSDSIQQDYEVLNIATKIINQFKLNE 158
*****************888888899999999999887765 PP
== domain 2 score: 1.6 bits; conditional E-value: 0.037
TIGR02367 201 vvkpwvGlGfGlerllkvredtk 223
++ G G+Gler++ + ++++
MMSYN1_0288 293 INLAACGFGMGLERFINIIKEQN 315
55666899*******98855433 PP
>> TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.0 3e-06 0.0026 148 208 .. 64 129 .. 27 163 .. 0.84
2 ? 1.6 0.0 0.034 30 274 299 .. 284 308 .. 259 316 .. 0.82
3 ? -1.8 0.1 0.37 3.3e+02 208 231 .. 390 413 .. 386 414 .] 0.85
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 3e-06
TIGR00468 148 ryefdeevarkllLRThttavqlraleeee.....nppirifsigrvfRrdavdatHlpeFhQveg 208
yef +++ r+l+L+ +ta +ra+ e++ n p+++ i +fR++ +FhQ+
MMSYN1_0288 64 MYEFVDKKNRSLVLKPEGTASVVRAVIENKlykeeNLPLKVYYISPMFRYERPQNGRYRQFHQLGI 129
59999***************99998888777777799**************************865 PP
== domain 2 score: 1.6 bits; conditional E-value: 0.034
TIGR00468 274 pevlealGiekelkvlafGlgieRla 299
+++++++G + l +fG+g+eR+
MMSYN1_0288 284 NNLVNEIGNIN-LAACGFGMGLERFI 308
67888899877.999*********85 PP
== domain 3 score: -1.8 bits; conditional E-value: 0.37
TIGR00468 208 glvvdknvslknLkglleeflkkl 231
+++++++ +++k +l +f+k l
MMSYN1_0288 390 EFIIKDQINKTQIKTTLTKFIKYL 413
5689999*************9986 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (414 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 292 (0.0650624); expected 89.8 (0.02)
Passed bias filter: 115 (0.0256239); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 5 (0.00111408); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 2584.88
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0288 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0289 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0289.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0289/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0289 [L=117]
Description: rbfA: ribosome-binding factor A 5=Equivalog Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.1e-21 72.7 2.4 8.8e-21 72.6 2.4 1.0 1 TIGR00082 rbfA: ribosome-binding factor A
Domain annotation for each model (and alignments):
>> TIGR00082 rbfA: ribosome-binding factor A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.6 2.4 2e-24 8.8e-21 1 111 [. 1 113 [. 1 117 [] 0.93
Alignments for each domain:
== domain 1 score: 72.6 bits; conditional E-value: 2e-24
TIGR00082 1 masekrkerveseikkeiaeilireikddrvglltVtkVevSkdllhakvfvsvlkd..eeaiekvvkalkkAkgfirsllgkrlrlrktpelsFvkD 96
ma+ k ++r es + +e++ il+reik + +++++V++ ++S+d +h+k+f +++ + i+++ + l++ ir l+++l +r +pel+Fv+D
MMSYN1_0289 1 MANIKTQKRKESLLLRELNLILQREIKSEILKSVSVVETRLSADNSHVKIFYQFIPIpeNLTIQSIEEELENKLKEIRMILASKLDWRTVPELTFVYD 98
7777788999*******************************************98543277899999******************************* PP
TIGR00082 97 eslekglrienline 111
sl+++++i+++++e
MMSYN1_0289 99 TSLDRANQIDKILKE 113
************987 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (117 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 178 (0.0396613); expected 89.8 (0.02)
Passed bias filter: 89 (0.0198307); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 840.09
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0289 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0290 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0290.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0290/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0290 [L=292]
Description: TruB: tRNA pseudouridine(55) synthase 5=Equivalog tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-62 209.1 0.6 1.8e-62 208.8 0.6 1.1 1 TIGR00431 TruB: tRNA pseudouridine(55) synthase
4.5e-26 89.7 0.8 4.3e-23 79.9 0.8 2.9 1 TIGR00425 CBF5: putative rRNA pseudouridine synthase
Domain annotation for each model (and alignments):
>> TIGR00431 TruB: tRNA pseudouridine(55) synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 208.8 0.6 7.9e-66 1.8e-62 2 209 .. 4 214 .. 3 215 .. 0.95
Alignments for each domain:
== domain 1 score: 208.8 bits; conditional E-value: 7.9e-66
TIGR00431 2 dgvllldkpqgltsfdalakvkrllkvkkvGHtGtLDplaeGvlvllvGkatklseylteldkeYeaeirlGvrtdtlDaeGevvek.kevvpeveev 98
g++ l+kp+ + ++++++vk+ l+ kkvGH GtLD la+Gv+++lv +atk+s+yl++++k Y+++i+l + td+ DaeG+++++ ++ + +++++
MMSYN1_0290 4 SGIFILNKPSNISTYQLINQVKKKLNIKKVGHCGTLDLLATGVVICLVNNATKISDYLLNANKAYQVKIKLFTLTDSFDAEGNIIQTqTPFNISLDQI 101
699**********************************************************************************96256788999** PP
TIGR00431 99 eaaleefkG.eieqvPpeysalkvnGkklyeyarqGieverkarkvtvfdlkllgkkeqe..elelevkCskGtYiRalardlgeklgsgAyvseLrR 193
++++++++ +q Pp ys++kv+Gkklyeya + ve+k+rkvt+++ ll ++q+ e+ l vkCskGtYiR+la d+ + l++ yv +L+R
MMSYN1_0290 102 NKVISKYNNyTYNQCPPIYSSIKVDGKKLYEYALTNQDVEIKSRKVTIYKTSLL-DYDQKnyEIFLDVKCSKGTYIRSLAVDICKDLNTIGYVVYLNR 198
*****99872678*****************************************.5766656899********************************* PP
TIGR00431 194 trvgkfsldeavtlee 209
t +g+f+l++a++l++
MMSYN1_0290 199 TLSGNFKLENATDLNN 214
************9987 PP
>> TIGR00425 CBF5: putative rRNA pseudouridine synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 79.9 0.8 1.9e-26 4.3e-23 33 245 .. 3 254 .. 1 284 [. 0.74
Alignments for each domain:
== domain 1 score: 79.9 bits; conditional E-value: 1.9e-26
TIGR00425 33 kkGvvnldkPsgPsshevvawvrrilrvektGhsGtldPkvtGvlivaieratrlvkllqeagkeyvclvrlhr..................dvkeed 112
k+G+ l+kPs+ s++++ v++ l+++k+Gh+Gtld tGv+i +++at++ ++l +a+k y ++l + +++ ++
MMSYN1_0290 3 KSGIFILNKPSNISTYQLINQVKKKLNIKKVGHCGTLDLLATGVVICLVNNATKISDYLLNANKAYQVKIKLFTltdsfdaegniiqtqtpfNISLDQ 100
689***************************************************************77666653222222222222112222234467 PP
TIGR00425 113 lervleeltGklf.qrPPlksavk...rql..............rvrtiyelellevdgkd..vlfrvsceaGtyirklcedlGellGvgahmqelrr 190
+++v+ +++ + q PP+ s++k ++l r tiy+++ll++d+k+ + + v+c Gtyir l +d+ + l + + + l r
MMSYN1_0290 101 INKVISKYNNYTYnQCPPIYSSIKvdgKKLyeyaltnqdveiksRKVTIYKTSLLDYDQKNyeIFLDVKCSKGTYIRSLAVDICKDLNTIGYVVYLNR 198
8899999998888688*****9985552222222222222222234489***********9856668******************************* PP
TIGR00425 191 vrsGaleedelvtlhdlldayvlykedgdesylrevikPl.evalaelkrvvvkds 245
+ sG ++ +++ l+++ + + +d ++ +v++ + + k++++ d
MMSYN1_0290 199 TLSGNFKLENATDLNNISWDHLISINDAIKTNDFKVVNYQnSLEIIQGKKIILNDI 254
***********999999766666655555544444444330334556666666665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (292 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 221 (0.0492424); expected 89.8 (0.02)
Passed bias filter: 74 (0.0164884); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 2096.62
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0290 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0291 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0291.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0291/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0291 [L=184]
Description: ribF 3=Putative Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-23 82.0 5.9 1.4e-23 81.7 5.9 1.0 1 TIGR00083 ribF: riboflavin biosynthesis protein RibF
2.6e-07 28.7 0.1 5.2e-07 27.8 0.1 1.5 1 TIGR00125 cyt_tran_rel: cytidyltransferase-like domain
5.6e-05 21.2 1.1 0.016 13.2 0.2 2.1 2 TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide ad
------ inclusion threshold ------
0.19 9.0 5.9 1.4 6.2 0.7 2.1 2 TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reduc
Domain annotation for each model (and alignments):
>> TIGR00083 ribF: riboflavin biosynthesis protein RibF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 81.7 5.9 1.3e-26 1.4e-23 2 166 .. 21 178 .. 20 182 .. 0.87
Alignments for each domain:
== domain 1 score: 81.7 bits; conditional E-value: 1.3e-26
TIGR00083 2 laiGkFDGlHlGHqallqelkqkaeeknlpvavlliekkplelfsgkkkpaLtpLeekarqleklgvevllv..vkfdeelanlsakqFidqllvkhl 97
++iG+FDG H Hq++++++ ++a+++nl+ +v++++kk + + k++ L ++k++ ++++ ++ ++ +k d l + + +qFid ll k l
MMSYN1_0291 21 ITIGNFDGFHIFHQKIINQVINIAKQENLTSIVMSFDKKIK---NNKTHTNLATKKQKLEFINTKLTDLDYFidIKVDDSLIKTTKDQFIDILLNK-L 114
69***********************************9988...666666799999999999988776666511577788889999*****99999.* PP
TIGR00083 98 rvkelvvGaDFrFGkerkgdvlllkeakeetiitvivkelkeqdkrisSsairqaLkngdlelAnklLg 166
+v ++v G+DF+FG +g++ l +++ +++ ++ d+ isS+ i++ L ++ +++A++lLg
MMSYN1_0291 115 NVIKIVEGQDFTFGYLSQGNINDLIRVFSKENVIIFKR-----DNDISSTKIKKLLDENLVDKAQELLG 178
**********************9988888887444444.....457**********************8 PP
>> TIGR00125 cyt_tran_rel: cytidyltransferase-like domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.8 0.1 4.6e-10 5.2e-07 2 58 .. 20 81 .. 19 87 .. 0.87
Alignments for each domain:
== domain 1 score: 27.8 bits; conditional E-value: 4.6e-10
TIGR00125 2 vvfvGtFdplHlGHlklleeakelfde...livgvgsdefvnpekg..pvtsaeerlemlka 58
++++G+Fd++H H+k+++++ +++ + + +++ +d+ +++ k + ++++ le + +
MMSYN1_0291 20 IITIGNFDGFHIFHQKIINQVINIAKQenlTSIVMSFDKKIKNNKThtNLATKKQKLEFINT 81
689***********************999999****99977777777799999988887765 PP
>> TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.2 0.2 1.4e-05 0.016 3 58 .. 23 79 .. 21 105 .. 0.77
2 ! 7.2 0.0 0.00098 1.1 140 173 .. 137 168 .. 112 175 .. 0.76
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 1.4e-05
TIGR00482 3 gGsFdPihlgHlllaeealealdldkli.vvpsaispvkkteekassehRlamlkla 58
G+Fd h+ H ++++++++ +++++l+ +v s+++ k++++ +++ + + l+ +
MMSYN1_0291 23 IGNFDGFHIFHQKIINQVINIAKQENLTsIVMSFDKKIKNNKTHTNLATKKQKLEFI 79
69*********************9999736678999999988888855544444433 PP
== domain 2 score: 7.2 bits; conditional E-value: 0.00098
TIGR00482 140 kaikllkekrnlvllkepaveiSStkiRkaireg 173
+i+++ k n++++k ++iSStki k ++e+
MMSYN1_0291 137 DLIRVF-SKENVIIFKRD-NDISSTKIKKLLDEN 168
344455.46788888764.7********999875 PP
>> TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.7 1.3 0.0018 2 76 134 .. 46 101 .. 42 129 .. 0.76
2 ? 6.2 0.7 0.0012 1.4 74 122 .. 130 182 .. 99 184 .] 0.80
Alignments for each domain:
== domain 1 score: 5.7 bits; conditional E-value: 0.0018
TIGR02495 76 qagladllrevkelglkvkldtngsnprvleelleeglvdy.valDvKapaekyeelvgk 134
q++l++++ + + + k +tn+ ++ e ++ +l d ++D+K+ + l++
MMSYN1_0291 46 QENLTSIVMSFDKKIKNNKTHTNLATKKQKLEFINTKLTDLdYFIDIKVDDS----LIKT 101
7889999999999888999*******************8854689***9877....3333 PP
== domain 2 score: 6.2 bits; conditional E-value: 0.0012
TIGR02495 74 llqagladllrevkelglkvkldtngsnprvleelleeglvdy....valDvK 122
l q +++dl+r + + ++ + n + ++++ll+e+lvd+ +++D+K
MMSYN1_0291 130 LSQGNINDLIRVFSKENVIIFKRDNDISSTKIKKLLDENLVDKaqelLGIDLK 182
668889**************999*******************73333456665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (184 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 434 (0.0967023); expected 89.8 (0.02)
Passed bias filter: 95 (0.0211676); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1321.16
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0291 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0294 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0294.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0294/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0294 [L=88]
Description: S15_bact: ribosomal protein S15 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-32 109.7 2.6 1.7e-32 109.5 2.6 1.0 1 TIGR00952 S15_bact: ribosomal protein uS15
Domain annotation for each model (and alignments):
>> TIGR00952 S15_bact: ribosomal protein uS15
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.5 2.6 3.9e-36 1.7e-32 2 86 .] 4 88 .] 3 88 .] 0.98
Alignments for each domain:
== domain 1 score: 109.5 bits; conditional E-value: 3.9e-36
TIGR00952 2 kekkeeiikefqlhekDtGsaevqiallterikkLteHlkankkDhssrrgLlklvgkRrrLlkylkkkdverYrelikkLglrk 86
ke+k ++ikef+ +ek+tG aevqia+lt++i +LteHlk +kkD +rr Llk+v++Rr+ l+yl kkdv+rY+e+i+kLg+rk
MMSYN1_0294 4 KEQKLALIKEFGGDEKNTGLAEVQIAILTAEISNLTEHLKMHKKDIPTRRTLLKKVAQRRHFLDYLVKKDVNRYKEVIEKLGIRK 88
899********************************************************************************97 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (88 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 205 (0.0456774); expected 89.8 (0.02)
Passed bias filter: 106 (0.0236185); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 665.11
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0294 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0296 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0296.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0296/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0296 [L=214]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (214 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 537 (0.119652); expected 89.8 (0.02)
Passed bias filter: 99 (0.0220588); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1536.57
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0296 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0297 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0297.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0297/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0297 [L=620]
Description: IF-2: translation initiation factor IF-2 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-221 734.9 22.1 2.4e-221 734.5 22.1 1.1 1 TIGR00487 IF-2: translation initiation factor IF-2
2.5e-50 169.5 26.5 5.5e-34 115.5 3.7 3.1 2 TIGR00491 aIF-2: translation initiation factor aIF-2
2.9e-35 119.4 0.9 1.1e-34 117.5 0.9 2.0 1 TIGR00231 small_GTP: small GTP-binding protein domain
5.8e-24 82.7 6.0 5.8e-24 82.7 6.0 2.4 4 TIGR00475 selB: selenocysteine-specific translation elongati
1.1e-19 68.1 8.9 5.7e-19 65.7 5.2 2.8 2 TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
4.8e-19 66.1 10.1 5.1e-17 59.4 4.7 3.4 2 TIGR01393 lepA: elongation factor 4
1.1e-18 65.1 3.3 7.2e-17 59.1 3.3 2.3 1 TIGR00485 EF-Tu: translation elongation factor Tu
1.3e-16 58.8 4.8 1.6e-13 48.6 0.4 2.5 2 TIGR03680 eif2g_arch: translation initiation factor 2, gamma
7.8e-16 55.3 0.7 3.9e-15 53.0 0.7 2.0 1 TIGR00484 EF-G: translation elongation factor G
9.3e-13 45.4 0.1 4.2e-12 43.2 0.1 2.0 2 TIGR00503 prfC: peptide chain release factor 3
5.2e-12 43.4 1.7 2.3e-11 41.3 1.7 1.9 1 TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
4.6e-11 39.5 8.5 3.4e-10 36.6 3.0 3.0 2 TIGR00490 aEF-2: translation elongation factor aEF-2
1.6e-09 35.3 4.3 3.3e-09 34.2 3.1 2.2 1 TIGR02034 CysN: sulfate adenylyltransferase, large subunit
2.1e-09 34.3 11.3 6.3e-09 32.7 0.5 3.9 4 TIGR00483 EF-1_alpha: translation elongation factor EF-1, su
1.1e-08 32.3 0.5 1.1e-08 32.3 0.5 1.9 2 TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation
1.3e-08 32.5 0.7 1.3e-08 32.5 0.7 2.1 2 TIGR00436 era: GTP-binding protein Era
9.2e-08 29.9 2.4 8.3e-06 23.6 0.0 3.2 2 TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding prote
0.0002 19.6 0.2 0.00085 17.6 0.2 2.1 1 TIGR02528 EutP: ethanolamine utilization protein, EutP
0.0026 14.6 0.1 0.0026 14.6 0.1 2.5 2 TIGR03156 GTP_HflX: GTP-binding protein HflX
Domain annotation for each model (and alignments):
>> TIGR00487 IF-2: translation initiation factor IF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 734.5 22.1 1e-223 2.4e-221 3 583 .. 34 620 .] 32 620 .] 0.96
Alignments for each domain:
== domain 1 score: 734.5 bits; conditional E-value: 1e-223
TIGR00487 3 kekivikesltvselaeklnvkesdiikkllllGvmvtinqvldketielvaeelgvkve..vrvtleeeeveeeee.dsedkkeerpPvvtimGhvD 97
+ +v++e+l v e+a+k+n + i+k+ +++G++++ n l++e++ ++ e+g++ + ++vt+e++ e d e++++erpP+vtimGhvD
MMSYN1_0297 34 DGIFVYTEPLSVIEFATKINKPLTAILKHYFNQGLLLNQNTLLTEEQMGELCLEFGFDFKkeTTVTKENILQTLLETvDDEKHLKERPPIVTIMGHVD 131
567899**********************************************9877666500555555554444444687999*************** PP
TIGR00487 98 hGktsLLdsirktkvaegeaGGitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivain 195
hGkt+LLdsi++ +v+++eaGGitq iGayq+ ++++kkitf+DtPGheaft+mr+rGa+vtDivvl+vaadDGv+pqt+eai+hak anvPiiv+in
MMSYN1_0297 132 HGKTTLLDSIKNSNVVASEAGGITQAIGAYQITTKHNKKITFIDTPGHEAFTEMRSRGANVTDIVVLIVAADDGVMPQTEEAIDHAKLANVPIIVFIN 229
************************************************************************************************** PP
TIGR00487 196 kiDkpeanpDrvkqelseyglvpeewGGetifvpvsalkgkgideLldaiLlqseveelkanknkqakgvvieakldkgrGpvatvlvqeGtLkvGDi 293
kiDkp a+p+rvk el +yglv+ee+GG+ f+ sa k ++d+L d+i+l+se+e+lkan++k a+gvv+ea+ldk++Gpva+vlvq+GtL++ Di
MMSYN1_0297 230 KIDKPGADPNRVKTELMKYGLVAEEFGGDIPFIEGSAIKKINLDKLQDTIILISELENLKANPDKFASGVVLEAHLDKAKGPVASVLVQQGTLEIKDI 327
************************************************************************************************** PP
TIGR00487 294 vvvgaayGkvramidekGksvkeagPsiaveilGlsevPaaGdelivvkdekkarlvaekraeklkqkklsksvkvkleelseqikegelkelniilk 391
+++g+++G ++ + de ++v +a+Ps++v + Gl++vP+aGd++ v++dek ar+++e++ +k+++ + ++ +l+ ++++i egelk++ +i+k
MMSYN1_0297 328 MIAGTTFGSIKHIEDEFKHKVLKAEPSKPVVVYGLNQVPKAGDKFVVINDEKMAREISEAQLKKQQEEERRTKQAFTLDAIKQHIDEGELKNITLIIK 425
************************************************************9997777777777779********************** PP
TIGR00487 392 aDvqGsleaiknslekleveevkvkvihsgvGeitetDislasas...naiiigfnvrldakakkvaeaenvdlrkysviyklideikavlkGlldPe 486
aD+qGs+ea+knsl k++ vk+++i ++vG+i+ +Dislas+ i+ gfnvr+da ++k+ae++++++r +++iyk+i+e++ + kG+ldPe
MMSYN1_0297 426 ADTQGSVEALKNSLSKINISGVKINIIRASVGAISLSDISLASTVrdgLVIVYGFNVRPDAIVRKKAEEDHIEIRLHNIIYKVIEELEDAAKGILDPE 523
*******************************************9853235778********************************************* PP
TIGR00487 487 leeeviGkaevrevfkvpkiGaiaGcvvkeGvikrdnklrvlrdgvvifeGeidsLkrfkddvkeveegyeCGiviknyndikvGDiieafevkevk 583
++e v+G+a+vr++f+++ iG+i G +v +Gvi r++k+rv+r+gvv+++Gei+sL++ k+d ke+++g e G++ikn+ndik+ Di+ea++++++k
MMSYN1_0297 524 IKEVVLGQAQVRALFRHSAIGTIGGFYVLDGVIPRNAKIRVIRNGVVVYDGEINSLQHQKQDAKEIKAGFEGGLTIKNFNDIKEEDIFEAYKIEQIK 620
********************************************************************************************99886 PP
>> TIGR00491 aIF-2: translation initiation factor aIF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 115.5 3.7 2.3e-36 5.5e-34 3 133 .. 120 233 .. 118 248 .. 0.93
2 ! 55.7 14.9 2.9e-18 6.8e-16 221 534 .. 286 601 .. 281 613 .. 0.79
Alignments for each domain:
== domain 1 score: 115.5 bits; conditional E-value: 2.3e-36
TIGR00491 3 rsPivavlGhvdhGkttlldkirktrvakreaGgitqhiGaseiPidvikrlcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvv 100
r Piv+++GhvdhGkttlld i++++v++ eaGgitq iGa +i ++ k++ +idtPGheaft++r rG ++di +l+v
MMSYN1_0297 120 RPPIVTIMGHVDHGKTTLLDSIKNSNVVASEAGGITQAIGAYQITTKHNKKI-----------------TFIDTPGHEAFTEMRSRGANVTDIVVLIV 200
88***************************************99987655544.................49*************************** PP
TIGR00491 101 dineGfkpqtveavnilrqlktPfvvaankidr 133
+G+ pqt+ea++ + ++P +v nkid+
MMSYN1_0297 201 AADDGVMPQTEEAIDHAKLANVPIIVFINKIDK 233
********************************7 PP
== domain 2 score: 55.7 bits; conditional E-value: 2.9e-18
TIGR00491 221 drlklevegkakGtilevkeekGlGvtidaiiydGilkkgdilvvalkddvlvtrvkallkPkPldemreerdkfkkvdevtaaagvkiaapeldkvi 318
++lk + + a G++le +k G + +++ +G+l +di++ +++ + + ++ +k k l+ ++ + +++v a+ + ++ ++++ +
MMSYN1_0297 286 ENLKANPDKFASGVVLEAHLDKAKGPVASVLVQQGTLEIKDIMIAGTTFGSI-KHIEDEFKHKVLKAEPSKPVVVYGLNQVPKAGDKFVVINDEKMAR 382
68999************************************99999988887.579999999999987777778889999999988877776554443 PP
TIGR00491 319 agspirvvskekiekakeevlkeveeikievdde.....GilvkadtlGslealvnelrkag.....vkikkaevGdvskkdvvevasakqenklyga 406
s ++++ ++ e+ + + +++ik + d+ +++kadt Gs+eal n+l k + ++i +a vG +s d+ ++++++ +
MMSYN1_0297 383 EISEAQLKK-QQEEERRTKQAFTLDAIKQHIDEGelkniTLIIKADTQGSVEALKNSLSKINisgvkINIIRASVGAISLSDISLASTVRDGL---VI 476
333333333.3334444444555666666666532232378*****************99752221135678**********99998887754...36 PP
TIGR00491 407 ivafnvkilpeaekeiekydikvfldniiyklvedfeewikkeeerkkrkeleklikPakirilpdlifrqkd.PaivGvevlaGvlrvgapl.iked 502
+ fnv+ + ++k++e+ i + l+niiyk++e++e+ k + + + + e ++ a++r +fr++ +i+G vl Gv+ ++a++ + +
MMSYN1_0297 477 VYGFNVRPDAIVRKKAEEDHIEIRLHNIIYKVIEELEDAAKGILDPEIK---EVVLGQAQVRA----LFRHSAiGTIGGFYVLDGVIPRNAKIrVIRN 567
799***********************************99999765443...66788899986....5999873689**********77766434556 PP
TIGR00491 503 Gekv..Gevreikdrgenvkeakagkavsiaidd 534
G v Ge++++++++++ ke kag + ++i++
MMSYN1_0297 568 GVVVydGEINSLQHQKQDAKEIKAGFEGGLTIKN 601
7766679******************999999987 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 117.5 0.9 4.8e-37 1.1e-34 5 162 .. 123 279 .. 119 280 .. 0.95
Alignments for each domain:
== domain 1 score: 117.5 bits; conditional E-value: 4.8e-37
TIGR00231 5 kivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtk 102
++i+Ghvd+GK+tLl+s++ +++ +e+ g+t+ + ++qi+ + + k++++DT+G+e+f +++++r + v+div+l++++++g+++qt+
MMSYN1_0297 123 IVTIMGHVDHGKTTLLDSIKNSNVVASEA-GGITQAIGAYQITTKHNK-KITFIDTPGHEAF-------TEMRSRGANVTDIVVLIVAADDGVMPQTE 211
699********************777776.9**************977.*************.......***************************** PP
TIGR00231 103 eiiheakkkgvpiilvvnKiDlkd.......dlktkvkslfaklnaep.iielsaetgknidklfklv 162
e i++ak ++vpii+++nKiD+ + + + k++ ++++ ++ + +ie sa + n+dkl++++
MMSYN1_0297 212 EAIDHAKLANVPIIVFINKIDKPGadpnrvkTELMKYGLVAEEFGGDIpFIEGSAIKKINLDKLQDTI 279
****************************998889999*******99988**************99976 PP
>> TIGR00475 selB: selenocysteine-specific translation elongation factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.5 0.7 3 7.1e+02 356 387 .. 17 50 .. 2 117 .. 0.41
2 ! 82.7 6.0 2.4e-26 5.8e-24 2 207 .. 123 326 .. 122 353 .. 0.84
3 ? -1.0 0.2 0.52 1.2e+02 126 164 .. 403 442 .. 357 473 .. 0.66
4 ? -4.0 0.0 4.4 1e+03 219 244 .. 575 600 .. 542 613 .. 0.65
Alignments for each domain:
== domain 1 score: -3.5 bits; conditional E-value: 3
TIGR00475 356 seaqeiallke..rgavdlklefakqltgvslkk 387
++ + l++e g +d + +++ l ++
MMSYN1_0297 17 TKNIKKQLKEEvnTGLIDGIFVYTEPLSVIEFAT 50
2222222222210122333355555555554443 PP
== domain 2 score: 82.7 bits; conditional E-value: 2.4e-26
TIGR00475 2 iiataGHvDHGKttLlkaltgidadrlPeEkKRGltiDlG.yaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavl 98
i++++GHvDHGKttLl ++ + + + G+t +G y + +k++++iD PGHe f + g + d ++L+v+ad+Gv++qt+E + +
MMSYN1_0297 123 IVTIMGHVDHGKTTLLDSIKNSNVV---ASEAGGITQAIGaYQITTKHNKKITFIDTPGHEAFTEMRSRGANVTDIVVLIVAADDGVMPQTEEAIDHA 217
68899***********998776644...34568*******455555566************************************************* PP
TIGR00475 99 kllgikelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGieeLkkelknLlesldak.dkqkplrlaiDraFkvKGaGtvvt 195
kl +++ +iv ++K+D+ + + e++k l eef + ++ sA + +++L++++ + e+++ k + +k + +a K G v
MMSYN1_0297 218 KLANVP-IIVFINKIDKPGADPNRVKTELMKYGLVAEEFGGDIPFIEGSAIKKINLDKLQDTIILISELENLKaNPDKFASGVVLEAHLDKAKGPVAS 314
******.**********7766555556788999999999999**********************9999999985656655666677777777777777 PP
TIGR00475 196 GtafsGevkvgD 207
+ +G+ ++ D
MMSYN1_0297 315 VLVQQGTLEIKD 326
777777777776 PP
== domain 3 score: -1.0 bits; conditional E-value: 0.52
TIGR00475 126 eelkeile..eeeflknakivkvsAktGqGieeLkkelknL 164
+l +i++ +e+ lkn +++ A t +e+Lk++l ++
MMSYN1_0297 403 FTLDAIKQhiDEGELKNITLIIK-ADTQGSVEALKNSLSKI 442
33444444223445555555544.34434577777777665 PP
== domain 4 score: -4.0 bits; conditional E-value: 4.4
TIGR00475 219 rvkalqaqnqsvekavAGqRialnla 244
+ +lq q+q++++ AG +l ++
MMSYN1_0297 575 EINSLQHQKQDAKEIKAGFEGGLTIK 600
57888888888888888876666554 PP
>> TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 65.7 5.2 2.4e-21 5.7e-19 4 166 .. 124 269 .. 123 341 .. 0.75
2 ? -1.4 0.1 0.5 1.2e+02 190 254 .. 519 583 .. 492 600 .. 0.81
Alignments for each domain:
== domain 1 score: 65.7 bits; conditional E-value: 2.4e-21
TIGR01394 4 iaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavk.ykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseG 100
+ i+ hvDhGkttl+D++ k+s+v+ ++ Git + ++ ++ ki +DtPGh f r ++ d v+l+v a +G
MMSYN1_0297 124 VTIMGHVDHGKTTLLDSI-KNSNVVASEA---------------GGITQAIGAYQITtKHNKKITFIDTPGHEAFTEMRSRGANVTDIVVLIVAADDG 205
7899************97.5555443332...............3455444444443035689*********************************** PP
TIGR01394 101 plpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLfvelgaddeqldfpvvyasakeG 166
++pqt + a ++ +iv inkiD+p a+p++v e + + l a++ d+p + +sa +
MMSYN1_0297 206 VMPQTEEAIDHAKLANVPIIVFINKIDKPGADPNRVKTELMK--YGLVAEEFGGDIPFIEGSAIKK 269
************************************987654..4566777777777776666654 PP
== domain 2 score: -1.4 bits; conditional E-value: 0.5
TIGR01394 190 vpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafe 254
+ P+ ++ q++v l ++ +G i v +G++ ++ +++++++ + ++ i++l + +
MMSYN1_0297 519 ILDPEIKEVVLGQAQVRALFRHSAIGTIGGFYVLDGVIPRNAKIRVIRNGVVVYDGEINSLQHQK 583
555666666666889999999999999999999************99999999999999886554 PP
>> TIGR01393 lepA: elongation factor 4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.4 4.7 2.1e-19 5.1e-17 7 221 .. 125 327 .. 122 352 .. 0.83
2 ? 4.1 0.2 0.012 2.8 200 267 .. 540 608 .. 495 617 .. 0.76
Alignments for each domain:
== domain 1 score: 59.4 bits; conditional E-value: 2.1e-19
TIGR01393 7 siiahidhGkstladrllektkavserelkeqlldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaa 104
+i+ h+dhGk+tl d + ++ ++v + Git a +++ k ++ ++ +idtPGh f+ sr + ++ ++l+v a
MMSYN1_0297 125 TIMGHVDHGKTTLLDSIKNS-NVVAS--------------EAGGITQAIGAYQITTK----HNKKITFIDTPGHEAFTEMRSRGANVTDIVVLIVAAD 203
68999999999999986443.33332..............24588877777777665....456899******************************* PP
TIGR01393 105 qGveaqtlanvylalekdleiiPvinkidlPsadvervkkeieeviGldaee......ailvsaktGigieelleaiv..kkvpaPkgdkeaplkali 194
Gv qt + a ++ ii inkid P ad++rvk+e+ + Gl aee i sa + i++++l ++i+ +++ + k ++++ ++
MMSYN1_0297 204 DGVMPQTEEAIDHAKLANVPIIVFINKIDKPGADPNRVKTELMKY-GLVAEEfggdipFIEGSAIKKINLDKLQDTIIliSELENLKANPDKFASGVV 300
*****************************************9875.444443222222578899999*******9985337899999*********** PP
TIGR01393 195 fdsvydayrGvvvyvrvveGkikkgdk 221
++++ d+ +G v+ v v +G+++ +d
MMSYN1_0297 301 LEAHLDKAKGPVASVLVQQGTLEIKDI 327
**********************98874 PP
== domain 2 score: 4.1 bits; conditional E-value: 0.012
TIGR01393 200 dayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpklvkeeelkaGevG.yliagikdvkdv 267
+ G + + v++G i ++ ki+++ +g e+ l+ ++++ +e+kaG G i + d+k+
MMSYN1_0297 540 HSAIGTIGGFYVLDGVIPRNAKIRVIRNGVVVYDGEINSLQHQKQDAKEIKAGFEGgLTIKNFNDIKEE 608
44568888899******************9999999999999999999*****6550555555555554 PP
>> TIGR00485 EF-Tu: translation elongation factor Tu
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.1 3.3 3.1e-19 7.2e-17 15 204 .. 124 293 .. 112 332 .. 0.73
Alignments for each domain:
== domain 1 score: 59.1 bits; conditional E-value: 3.1e-19
TIGR00485 15 vgtighvdhgkttltaaittvlakegkaaakkydeidkapeekargitintahveyet.ekrhyahvdcpghadyvknmitgaaqmdgailvvsaadg 111
v +ghvdhgkttl +i + ++ a git + + t ++++ + +d pgh + ga d +l+v+a dg
MMSYN1_0297 124 VTIMGHVDHGKTTLLDSIKNS-------NV---------VASEAGGITQAIGAYQITTkHNKKITFIDTPGHEAFTEMRSRGANVTDIVVLIVAADDG 205
455799999999998777432.......11.........122355666655555544414677899**********9999****************** PP
TIGR00485 112 pmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrel.lseydfpgddvpivrgsalkalegdaeweekilelmeavdeyiptpe 204
+mpqt e i a+ vp ++vf+nk+d + + v+ e+ + l + +f g d+p ++gsa+k ++ d+ i+ l++++++ +p+
MMSYN1_0297 206 VMPQTEEAIDHAKLANVP-IIVFINKIDKPGADP--NRVKTELMKYgLVAEEFGG-DIPFIEGSAIKKINLDKLQDT-II-LISELENLKANPD 293
******************.789******976554..4566666544277888977.9************98765443.32.5556666555555 PP
>> TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.5 0.5 0.00012 0.029 8 26 .. 124 142 .. 119 158 .. 0.86
2 ! 48.6 0.4 6.6e-16 1.6e-13 76 193 .. 164 280 .. 148 326 .. 0.84
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 0.00012
TIGR03680 8 iglvGhvDhGkttlvkalt 26
++++GhvDhGkttl ++
MMSYN1_0297 124 VTIMGHVDHGKTTLLDSIK 142
7899**********98875 PP
== domain 2 score: 48.6 bits; conditional E-value: 6.6e-16
TIGR03680 76 etellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvskekalenyeeik.efvkgtvaena 172
t++ +k++f+D+PGhe++ Ga + d +L++aa++ v +pqt+e + ++ ++ i++ nkid + + e +k +v +++ +
MMSYN1_0297 164 TTKHNKKITFIDTPGHEAFTEMRSRGANVTDIVVLIVAADDGV-MPQTEEAIDHAKLANV-PIIVFINKIDKPGADPNRVKTELMKyGLVAEEFGGDI 259
67899*************9999999******************.*********9999888.588899****98777766666666635899999**** PP
TIGR03680 173 piiPvsalkkvnidvlleale 193
p i sa+kk+n+d l +++
MMSYN1_0297 260 PFIEGSAIKKINLDKLQDTII 280
**************9988764 PP
>> TIGR00484 EF-G: translation elongation factor G
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 53.0 0.7 1.6e-17 3.9e-15 58 152 .. 151 246 .. 116 261 .. 0.86
Alignments for each domain:
== domain 1 score: 53.0 bits; conditional E-value: 1.6e-17
TIGR00484 58 erGititsaattvewk.dfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlk 152
Git + a +++ k + +i idtPGh ft r v d v+++ a Gv pq+e ak +vP ivf+nk+dk Ga++ +v+++l
MMSYN1_0297 151 AGGITQAIGAYQITTKhNKKITFIDTPGHEAFTEMRSRGANVTDIVVLIVAADDGVMPQTEEAIDHAKLANVPIIVFINKIDKPGADPNRVKTELM 246
45899988888877662689***********************************************************************98874 PP
>> TIGR00503 prfC: peptide chain release factor 3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.1 0.0 0.47 1.1e+02 14 42 .. 124 152 .. 114 166 .. 0.72
2 ! 43.2 0.1 1.8e-14 4.2e-12 77 153 .. 166 242 .. 142 252 .. 0.87
Alignments for each domain:
== domain 1 score: -1.1 bits; conditional E-value: 0.47
TIGR00503 14 faiishpdaGkttltekvllyGnaiqeaG 42
+i+ h d Gkttl + + eaG
MMSYN1_0297 124 VTIMGHVDHGKTTLLDSIKNSNVVASEAG 152
57899999999999887755554445555 PP
== domain 2 score: 43.2 bits; conditional E-value: 1.8e-14
TIGR00503 77 yrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplell 153
++k + ++dtpGhe f+e r +d +++++ a Gv +t ++ ++l ++pi+ f+nk+d++ dp +
MMSYN1_0297 166 KHNKKITFIDTPGHEAFTEMRSRGANVTDIVVLIVAADDGVMPQTEEAIDHAKLANVPIIVFINKIDKPGADPNRVK 242
46788999**************************************************************9996654 PP
>> TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.3 1.7 9.8e-14 2.3e-11 155 358 .. 102 295 .. 92 318 .. 0.77
Alignments for each domain:
== domain 1 score: 41.3 bits; conditional E-value: 9.8e-14
TIGR03594 155 eileelpeeeeeeeeeeeeepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevk.gkkylliDTAGirrkkkveekveklsvlrt 251
+il++l e+ ++e++ +e+p ++i+G GK tL+ ++ + v++s+ G+T+ ++++k +kk+++iDT G e + +r+
MMSYN1_0297 102 NILQTLLETVDDEKHL-KERPPIVTIMGHVDHGKTTLLDSIKN-SNVVASEAGGITQAIGAYQITTKhNKKITFIDTPG----------HEAFTEMRS 187
5555555554444443.4567899**************99865.5689999999999887777765427889*****99..........466666666 PP
TIGR03594 252 lkaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlv..kdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikevye 347
+ d+v+l++ a +g+ q ++ ++ ++ ++ ++++ +NK+D+ + ++ ++el k +f +p++ SA ++ +++kl ++i + e
MMSYN1_0297 188 RG-ANVTDIVVLIVAADDGVMPQTEEAIDHAKLANVPIIVFINKIDKPgaDPNRVKTELMKYGLVAEEFGGDIPFIEGSAIKKINLDKLQDTIILISE 284
55.47789**************************************99744555555566665667788899999999***********999998888 PP
TIGR03594 348 slskristskl 358
+ + + k+
MMSYN1_0297 285 LENLKANPDKF 295
77777776665 PP
>> TIGR00490 aEF-2: translation elongation factor aEF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.6 3.0 1.4e-12 3.4e-10 22 150 .. 124 233 .. 108 248 .. 0.79
2 ? -0.6 0.3 0.26 62 511 590 .. 374 456 .. 340 475 .. 0.71
Alignments for each domain:
== domain 1 score: 36.6 bits; conditional E-value: 1.4e-12
TIGR00490 22 igivahidhgkttlsdnllagagmiseelageqlfldfdeqeqergit..idaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvv 117
+ i+ h+dhgkttl d + +++ e git i a +++ h + i +idtpgh f +r d ++++v
MMSYN1_0297 124 VTIMGHVDHGKTTLLDSIKNSN-VVASEAG---------------GITqaIGAYQITTKH-----NKKITFIDTPGHEAFTEMRSRGANVTDIVVLIV 200
5677888888888888776543.4444433...............333113444444444.....34699**************************** PP
TIGR00490 118 cavegvmpqtetvlrqalkenvkpvlfinkvdr 150
+a +gvmpqte + a nv ++fink+d+
MMSYN1_0297 201 AADDGVMPQTEEAIDHAKLANVPIIVFINKIDK 233
*******************************97 PP
== domain 2 score: -0.6 bits; conditional E-value: 0.26
TIGR00490 511 kvkkkeiakelieagldk..eeakrveevyegnll.invtrg.iqyldevkelilegfkeamrngpvakekvmgvkvklvdakl 590
++ ++a+e+ ea l+k ee +r+++ + + + ++ g ++ + + + +g ea++n ++k ++ gvk+ ++ a +
MMSYN1_0297 374 VINDEKMAREISEAQLKKqqEEERRTKQAFTLDAIkQHIDEGeLKNITLIIKADTQGSVEALKN-SLSKINISGVKINIIRASV 456
5667789999999988643377788887776554413455552444555555556888889887.5899999999999887765 PP
>> TIGR02034 CysN: sulfate adenylyltransferase, large subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.2 3.1 1.4e-11 3.3e-09 65 367 .. 153 444 .. 137 475 .. 0.71
Alignments for each domain:
== domain 1 score: 34.2 bits; conditional E-value: 1.4e-11
TIGR02034 65 gitidv.ayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdydeevfeeikkdyl 161
git + ay+ + + +k dtPGhe +t ga +d++vl+v a Gv+ qt a l + +++ +nkid + d + ++ +y
MMSYN1_0297 153 GITQAIgAYQITTKHNKKITFIDTPGHEAFTEMRSRGANVTDIVVLIVAADDGVMPQTEEAIDHAKLANV-PIIVFINKIDKPGADPNRVKTELMKYG 249
6666654788877888899999************************************998888888777.57888**********999999999999 PP
TIGR02034 162 alaeklgvsdvtviPlsalkGdnvveksesmpWyeGptllevletveveesaeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsgres 259
+ae++g d+ +i sa+k n+ + ++ +l++ le+++ + ++ ++++ l + ++++ + +++ G+++ d ++ + +
MMSYN1_0297 250 LVAEEFGG-DIPFIEGSAIKKINLDKLQD------TIILISELENLKANPDKFASGVVLEAHL---DKAKGPVASVLVQQGTLEIKD-IM-IAGTTFG 335
99999974.78899999988888766554......4578888887777776655555443221...111111123334444444433.22.2333445 PP
TIGR02034 260 rvariv.tfdgelekaeaGeavtlvledeidisrGdllaaadeapevadqfaaelvwladeallpGksyklklgtkkv.rasvaeikhkvdvntleke 355
+++i +f+ ++ kae + v++ +++ Gd ++ ++++ ++ + +a+l ++e + ++++l + +++ ++++++i+ + +t+ +
MMSYN1_0297 336 SIKHIEdEFKHKVLKAEPSKPVVVYGLNQVPK-AGDKFVVINDEKMAREISEAQLKKQQEEERRTKQAFTLDAIKQHIdEGELKNITLIIKADTQGSV 432
67777425777777777777777777777764.46666666665667777777777777777777777777665544425777777777777777777 PP
TIGR02034 356 aakelelneigl 367
+a + +l +i +
MMSYN1_0297 433 EALKNSLSKINI 444
776666665544 PP
>> TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.9 0.1 0.015 3.6 10 25 .. 124 139 .. 116 145 .. 0.82
2 ! 32.7 0.5 2.7e-11 6.3e-09 69 162 .. 152 242 .. 138 280 .. 0.78
3 ? 2.8 0.1 0.033 7.9 382 407 .. 348 374 .. 338 397 .. 0.80
4 ? -1.3 0.2 0.58 1.4e+02 232 304 .. 534 607 .. 502 613 .. 0.79
Alignments for each domain:
== domain 1 score: 3.9 bits; conditional E-value: 0.015
TIGR00483 10 vafighvdsgkstlvg 25
v+++ghvd+gk+tl+
MMSYN1_0297 124 VTIMGHVDHGKTTLLD 139
7899*********975 PP
== domain 2 score: 32.7 bits; conditional E-value: 2.7e-11
TIGR00483 69 rgvtidvahkkfetdk.yevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfe 162
g+t + ++ t++ ++t +d+pgh f ga +d vl+va+ddg v+pqt e + a+ +iv ink+d+ d ++ +
MMSYN1_0297 152 GGITQAIGAYQITTKHnKKITFIDTPGHEAFTEMRSRGANVTDIVVLIVAADDG---VMPQTEEAIDHAKLAN-VPIIVFINKIDKPGADPNRVK 242
5888888888887765168**********************************9...*****99988887555.5799*******9877766544 PP
== domain 3 score: 2.8 bits; conditional E-value: 0.033
TIGR00483 382 ivklkptkplviekvkeipklg.rfai 407
++k +p+kp+v+ ++++pk g +f +
MMSYN1_0297 348 VLKAEPSKPVVVYGLNQVPKAGdKFVV 374
889*****************9944554 PP
== domain 4 score: -1.3 bits; conditional E-value: 0.58
TIGR00483 232 iqdvysitgvgtvpvgrvetgvlkkgekvvfepagv...sgevksiemhheqieqaepgdnigfnvrgvskkdirr 304
++ +++ + +gt+ v gv+ + k+ gv ge+ s++ ++ ++ + g + g+ +++ +di+
MMSYN1_0297 534 VRALFRHSAIGTIGGFYVLDGVIPRNAKIRVIRNGVvvyDGEINSLQHQKQDAKEIKAGFEGGLTIKNF--NDIKE 607
556778889999999999999999998888888887334489999999888899999999999888875..45555 PP
>> TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.3 0.5 4.6e-11 1.1e-08 9 134 .. 123 242 .. 115 300 .. 0.72
2 ? -2.0 0.6 1.2 2.8e+02 107 165 .. 408 441 .. 363 455 .. 0.48
Alignments for each domain:
== domain 1 score: 32.3 bits; conditional E-value: 4.6e-11
TIGR03918 9 hialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleee 106
++++G+ GK +l+ + + +v + s+ G T + ++ ++ +++iDT+G + ++ e+R + + + td+++l+v a+ ++ + ee
MMSYN1_0297 123 IVTIMGHVDHGKTTLLDSIKNSNV-VASEAGGITQAIGAYQITTKHNKKITFIDTPGHE---AFTEMRSRGA----NVTDIVVLIVAADDGVMPQTEE 212
4789***************88764.55555555555557788899999*********76...5666776544....679******************* PP
TIGR03918 107 lleelkekkipvivvlnkidlkeeeke..k 134
++++k ++p+iv +nkid+ ++ + k
MMSYN1_0297 213 AIDHAKLANVPIIVFINKIDKPGADPNrvK 242
********************9877644321 PP
== domain 2 score: -2.0 bits; conditional E-value: 1.2
TIGR03918 107 lleelkekkipvivvlnkidlkeeekekeklekkkeeevvlvsakekegieelkealie 165
+ ++ +e + ++ +++++a ++ ++e+lk++l++
MMSYN1_0297 408 IKQH-------------------------IDEGELKNITLIIKADTQGSVEALKNSLSK 441
1222.........................233333344444555555555555555544 PP
>> TIGR00436 era: GTP-binding protein Era
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.5 0.7 5.4e-11 1.3e-08 3 159 .. 124 279 .. 122 300 .. 0.75
2 ? -2.4 0.3 2.3 5.5e+02 64 79 .. 399 414 .. 357 456 .. 0.54
Alignments for each domain:
== domain 1 score: 32.5 bits; conditional E-value: 5.4e-11
TIGR00436 3 vailGrpnvGKSTLlNkllgqkisivSpkaqTTrn.risgiltegasqiifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknke.del 98
v+i+G+ + GK TLl ++ + + + S+ T+ i+t+++++i+fiDtPG + ++ e+ ++ ++ d+++++v +d+ e
MMSYN1_0297 124 VTIMGHVDHGKTTLLDSIKNSN-VVASEAGGITQAiGAYQITTKHNKKITFIDTPG----HEAFTEMRSRGAN----VTDIVVLIVAADDGVMPqTEE 212
89***************97765.4566666655541445677778888********....4556666666554....459999999999987665788 PP
TIGR00436 99 lleklqklkapvvlalnkldnk..ekdkllelidkeasl.lefk...eiveisalkgenveelkaiv 159
+++ + ++ p+++ +nk+d+ ++++ +++ k+ + +ef +e sa k+ n+++l+ ++
MMSYN1_0297 213 AIDHAKLANVPIIVFINKIDKPgaDPNRVKTELMKYGLVaEEFGgdiPFIEGSAIKKINLDKLQDTI 279
89999****************8655566666666666551555587788999999999999998764 PP
== domain 2 score: -2.4 bits; conditional E-value: 2.3
TIGR00436 64 klnellvkeirkalse 79
+ + +i++ ++e
MMSYN1_0297 399 TKQAFTLDAIKQHIDE 414
2222233333333332 PP
>> TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.6 1.8 3.9 9.1e+02 141 161 .. 7 27 .. 2 33 .. 0.80
2 ! 23.6 0.0 3.5e-08 8.3e-06 12 185 .. 115 279 .. 105 280 .. 0.77
Alignments for each domain:
== domain 1 score: -2.6 bits; conditional E-value: 3.9
TIGR03598 141 klkkselkkalkkvkkelkke 161
+kk+++++++k++kk+lk+e
MMSYN1_0297 7 NIKKQKAQNQTKNIKKQLKEE 27
578999999999999999887 PP
== domain 2 score: 23.6 bits; conditional E-value: 3.5e-08
TIGR03598 12 qlpedklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffev....neelrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvv 105
+ +++ p + ++G GK +l+ ++ n++ + +S+ G Tq i +++ n++++++D PG+ e+++++ + + + vv
MMSYN1_0297 115 KHLKERPPIVTIMGHVDHGKTTLLDSIKNSN--VVASEAGGITQAIGAYQIttkhNKKITFIDTPGH----------EAFTEMRS---RGANVTDIVV 197
44556778899****************9999..667999************77767799*******6..........23333322...2333445678 PP
TIGR03598 106 llvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkk..elkkeeekvevllfSslkkegieelkael 185
l+v + +++ + +e ++ +k a++p++v ++K+Dk + +++ +k +++ ++ ++ S+ kk+++++l++++
MMSYN1_0297 198 LIVAADDGVMPQTEEAIDHAKLANVPIIVFINKIDKPGADPNRVKTELMKYglVAEEFGGDIPFIEGSAIKKINLDKLQDTI 279
88899999999999**********************8766555555555551044555778899999999999999998876 PP
>> TIGR02528 EutP: ethanolamine utilization protein, EutP
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.6 0.2 3.6e-06 0.00085 3 114 .. 124 245 .. 123 270 .. 0.68
Alignments for each domain:
== domain 1 score: 17.6 bits; conditional E-value: 3.6e-06
TIGR02528 3 imliGsvgcGkttLtqaLkgeeikykk....tqav.......eykd..kaiDtPGeylenrryYsaLlvtaadadvivlvqsatde...esllspgfa 84
+ ++G+v+ GkttL +++k+ ++ + tqa+ ++++ + iDtPG + + + a +d++vl+ a+d +++ + a
MMSYN1_0297 124 VTIMGHVDHGKTTLLDSIKNSNVVASEaggiTQAIgayqittKHNKkiTFIDTPGH----EAFTEMRSRGANVTDIVVLIVAADDGvmpQTEEAIDHA 217
578********************997555559**93222221122223469***94....33333333444555788888888876111445556677 PP
TIGR02528 85 sifakeviglvtkidlaeadkeierakelL 114
++ + + i + kid + ad +r+k +L
MMSYN1_0297 218 KLANVPIIVFINKIDKPGADP--NRVKTEL 245
77888999999***9996554..4444444 PP
>> TIGR03156 GTP_HflX: GTP-binding protein HflX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.1 1.1e-05 0.0026 183 316 .. 115 238 .. 101 281 .. 0.71
2 ? -2.7 0.0 2 4.8e+02 223 253 .. 404 437 .. 380 441 .. 0.53
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 1.1e-05
TIGR03156 183 krkksevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeeeevlltDTVGFirkLPheLveaFkaTLeevaeadlllhvvDasd 280
k k++ p v+++G GK+tll+++ +++v+a + T +++ ++++++++ DT G he ++ +v+ d+++ +v a+d
MMSYN1_0297 115 KHLKERPPIVTIMGHVDHGKTTLLDSIKNSNVVASEAGGITQAIGAYQITTKHNKKITFIDTPG------HEAFTEMRSRGANVT--DIVVLIV-AAD 203
555777899*****************************************************99......455555566544444..4444444.334 PP
TIGR03156 281 eeaeeqieaveevLeelgaeeipvllvlNkidkle..e 316
+ + + ++ee +++ +++++p+++ +Nkidk
MMSYN1_0297 204 DGV---MPQTEEAIDHAKLANVPIIVFINKIDKPGadP 238
333...44556677788889999999999999866323 PP
== domain 2 score: -2.7 bits; conditional E-value: 2
TIGR03156 223 TLdpttrrlklpeeeevll...tDTVGFirkLPh 253
TLd+ ++++ e ++++l +DT G ++ L +
MMSYN1_0297 404 TLDAIKQHIDEGELKNITLiikADTQGSVEALKN 437
5555555554333333322122566666665555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (620 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 426 (0.0949198); expected 89.8 (0.02)
Passed bias filter: 152 (0.0338681); expected 89.8 (0.02)
Passed Vit filter: 28 (0.00623886); expected 4.5 (0.001)
Passed Fwd filter: 19 (0.00423351); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 19 [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.27
# Mc/sec: 3297.58
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0297 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0298 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0298.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0298/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0298 [L=99]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (99 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 209 (0.0465686); expected 89.8 (0.02)
Passed bias filter: 116 (0.0258467); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.18
# Mc/sec: 789.82
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0298 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0299 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0299.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0299/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0299 [L=93]
Description: PF04296 family protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (93 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 264 (0.0588235); expected 89.8 (0.02)
Passed bias filter: 83 (0.0184938); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 667.76
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0299 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0300 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0300.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0300/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0300 [L=584]
Description: nusA 5=Equivalog Transcription
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-97 324.3 21.8 1.8e-97 324.3 21.8 2.8 3 TIGR01953 NusA: transcription termination factor NusA
7.1e-06 24.4 12.5 0.00061 18.1 0.6 4.1 4 TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
Domain annotation for each model (and alignments):
>> TIGR01953 NusA: transcription termination factor NusA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 324.3 21.8 8.1e-101 1.8e-97 1 337 [. 6 343 .. 6 346 .. 0.97
2 ? -10.3 16.2 2 4.5e+03 75 153 .. 394 470 .. 344 506 .. 0.59
3 ? -9.4 13.2 2 4.5e+03 17 102 .. 457 555 .. 439 582 .. 0.60
Alignments for each domain:
== domain 1 score: 324.3 bits; conditional E-value: 8.1e-101
TIGR01953 1 ellealealakekelkeeeviealeealekaykkkfgsdenveveidrkkgeievyrrkevv..eevedeskeisLedareedpdveigdivkkeik. 95
elle+++ ++kek++++e++i+ l+e l+kay + +++d+ ++++i++++g i++ ++++vv e+++d ei+L++a+ ++pd++igd + k+i+
MMSYN1_0300 6 ELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQELKVVddEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEf 103
57899*********************************************************9888999999************************94 PP
TIGR01953 96 senfgriavqaakqvleqkireaekeavldefkskvgeiisgkvervkkee.vlvelgkteallpkkeqipgekfklgdkikvlvkevkkekkgakii 192
se+f+r v++++q+++qkireae+ +++++f s +ge++++kv +++e+ +++++ t a+l k++ i +e f++++ i+v+++ v+ke+k +i
MMSYN1_0300 104 SEEFSRMVVNQVRQIFQQKIREAERARIYEQFVSLEGEVVQAKVVGMNRENnYVLDINGTTAYLWKSKTINNEIFQINEIIDVYIEVVEKESKLSQIS 201
589*******************************************999998999******************************************* PP
TIGR01953 193 lSrtspellkellklevpEiadGiveIkkiaReaGeraKiaVesndenidpvGacvGqkGsriqaiskeLngEkiDiieysedkaefianaLsPakve 290
+Srt p++l +l+++evpE+ GiveIk+++Re+G+r+K+aV ++++n++p+Ga++G+ G+ri+ is L+gEkiDii+++ed+ ++++na++P kv+
MMSYN1_0300 202 ISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVAVITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVI 299
************************************************************************************************** PP
TIGR01953 291 svevldedkksaevvveeeqlslaiGkeGqNvrLaskLtgwkidvkt 337
s++ + ++ ++vv+++qlslaiGk+G+ ++L+++L ki++ +
MMSYN1_0300 300 SINKIGDE---YDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFS 343
**998655...9********************************986 PP
== domain 2 score: -10.3 bits; conditional E-value: 2
TIGR01953 75 edareedpdveigdivkkeiksenfgriavqaakqvleqkireaekeavldefkskvgeiisgkvervkkeevlvelgk 153
++ ++e+++++++ ++ + ++e ++++ +++l+q+ + e e+ ++ f+++++ +++ k +++++ ++ + +
MMSYN1_0300 394 QTTKKEENQIDVDALIAFQAEVE--HEQELKDQEELLKQESMYKEYENNFNDFENEKEILLAEKQLETQNQIIKEPVVE 470
23455566677777777776666..467778888888888888888888888877665555544444444443333322 PP
== domain 3 score: -9.4 bits; conditional E-value: 2
TIGR01953 17 eeeviealeealekaykkkfgsdenveveidrkkg...eievyrrkevveevedesk..........eisLedareedpdveigdivkkeiksenfgr 101
e+ ++++e + ++ ++++++++e +i ++k+ + ev + ++ve+v++ ++ + ++++++++++e++ +k+e ++++++
MMSYN1_0300 457 LETQNQIIKEPVVEVQEFEIEKQSKIEDQITENKQpeiKTEVETKPNIVEQVNKLNTnkpnnkfeqnRFNYKKQKQKEEELELDFDIKNEPDIDEIDA 554
44555666666666666666666666665554433211344555666776666655555666666555777777777888888877777777777765 PP
TIGR01953 102 i 102
+
MMSYN1_0300 555 N 555
5 PP
>> TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.3 0.4 0.13 3e+02 54 95 .. 111 152 .. 107 163 .. 0.78
2 ? -0.9 0.2 0.2 4.5e+02 56 82 .. 178 204 .. 172 244 .. 0.73
3 ! 18.1 0.6 2.7e-07 0.00061 42 92 .. 251 302 .. 237 312 .. 0.85
4 ! 11.9 0.1 2.2e-05 0.05 38 80 .. 311 353 .. 304 409 .. 0.74
Alignments for each domain:
== domain 1 score: -0.3 bits; conditional E-value: 0.13
TIGR01952 54 nvkkveellgkkvelveesedleefvknklapvkvknvkvse 95
v++v++ +++k+ e + e+fv v+ k v +++
MMSYN1_0300 111 VVNQVRQIFQQKIREAERARIYEQFVSLEGEVVQAKVVGMNR 152
5899*********************98766666666555554 PP
== domain 2 score: -0.9 bits; conditional E-value: 0.2
TIGR01952 56 kkveellgkkvelveesedleefvknk 82
+++e ++ +e+ve++ +l ++
MMSYN1_0300 178 FQINEIIDVYIEVVEKESKLSQISISR 204
577888899999999888887765544 PP
== domain 3 score: 18.1 bits; conditional E-value: 2.7e-07
TIGR01952 42 gemgvAiGkgGanvkkveell.gkkvelveesedleefvknklapvkvknvk 92
+ +g+ iG gG++++++ + l g k++++ ed ++ n+++pvkv +++
MMSYN1_0300 251 EPIGAIIGVGGNRINRISDILkGEKIDIIRWDEDQITYLINAMTPVKVISIN 302
569****************995799**********************98764 PP
== domain 4 score: 11.9 bits; conditional E-value: 2.2e-05
TIGR01952 38 vvkkgemgvAiGkgGanvkkveellgkkvelveesedleefvk 80
vv + ++++AiGk+G k + ll k+++ +s l+e +
MMSYN1_0300 311 VVPDTQLSLAIGKQGVAAKLIASLLKTKINIFSYSTALKENMD 353
788999*****************************99887554 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (584 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 487 (0.108512); expected 89.8 (0.02)
Passed bias filter: 71 (0.01582); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.21
# Mc/sec: 3993.57
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0300 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0301 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0301.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0301/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0301 [L=164]
Description: rimP 3=Putative Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (164 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 464 (0.103387); expected 89.8 (0.02)
Passed bias filter: 121 (0.0269608); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1177.56
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0301 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0302 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0302.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0302/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0302 [L=216]
Description: hypothetical protein 1=Unknown Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.012 12.7 0.1 0.015 12.4 0.1 1.2 1 TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family
Domain annotation for each model (and alignments):
>> TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.4 0.1 3.4e-06 0.015 93 161 .. 131 198 .. 79 201 .. 0.84
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 3.4e-06
TIGR03547 93 kknsWekletrsPvgllGasaveleegkililGGvnkeiFdkyladisaadkdkeaeekvveayfskka 161
+ ++W+k +++ g++ a++l+ +i+GG+n ++ + ++ + + +d++ ++ y+sk +
MMSYN1_0302 131 ELDNWSKTTAHITAGIATIAAASLNI-DSCIIGGFNAKVLETFFIQKNYLSEDEQIVLTMSFGYMSKSI 198
5789*************999996655.56788**********************999999999999976 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (216 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 315 (0.0701872); expected 89.8 (0.02)
Passed bias filter: 104 (0.0231729); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1632.55
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0302 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0303 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0303.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0303/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0303 [L=1482]
Description: polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type 5=Equivalog DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0 1590.3 36.5 0 1589.5 36.5 1.3 1 TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit,
1.6e-47 160.2 37.1 2e-25 87.0 3.6 6.9 8 TIGR00594 polc: DNA polymerase III, alpha subunit
7.2e-32 108.6 3.8 7.2e-32 108.6 3.8 2.1 2 TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon sub
7.3e-31 105.1 0.3 7.3e-31 105.1 0.3 2.1 2 TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG fa
5.9e-30 102.6 0.4 1.3e-29 101.4 0.4 1.6 1 TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit
2.4e-05 22.1 0.0 9.1e-05 20.3 0.0 1.9 1 TIGR01298 RNaseT: ribonuclease T
Domain annotation for each model (and alignments):
>> TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1589.5 36.5 0 0 3 1209 .. 220 1479 .. 218 1480 .. 0.94
Alignments for each domain:
== domain 1 score: 1589.5 bits; conditional E-value: 0
TIGR01405 3 iteeekkvkvegkifkiekkelksgrtllkikvtDyseslilkkflk.....e.....ked...kelld.....elkinkwvkvegkveldkfske 80
++++ +++ ++g++ ++e k k+gr+++ i++tD+++s++++ f k e + d ++ ++ +++in+w+ v+gk +l+ +e
MMSYN1_0303 220 VEDDAQNIVIQGMVINKEFKLSKTGRKIFYIDITDFQSSIRCMYFAKsdalcEfddltE-DelkSKEIQqikenKIQINDWISVKGKTSLSIYDQE 314
778899***************************************98533331222211.1111233441112257799***************** PP
TIGR01405 81 lqliikkieeie..kaerkdkakekRvelhlhtkmsqlDaitsveelvkqakkwglkaiaitDhnvvqafPelykl........akkaglkviyGl 166
+ +i++ ++i+ r d ak kRvelh+htkms +D++++ ++++ ++w++kaia tDh +vqafP++yk+ ++++++k+iyGl
MMSYN1_0303 315 QIFYIDDFKKIKkqVDLRIDDAKIKRVELHAHTKMSVMDGVSDPIDYLELISSWNHKAIAFTDHTNVQAFPDIYKAlnsinkkrSDQDKIKAIYGL 410
***********96445689*******************************************************983333211123455******* PP
TIGR01405 167 eaelvedkvpivlnekdqklkdatyvvfDiettGlspkldeiielaavkvkng.kiiekfelfikpeeklsekvteltgitdemlenakeleevle 261
e++++++ v+n+k+q+lkda v fD+ettGlsp+ldeiie++a+ ++ +k++ +ikp+ kl++++ +lt+it++mle++ ++e++++
MMSYN1_0303 411 EMNMLNNDLWYVKNPKNQNLKDARMVFFDLETTGLSPELDEIIEFGAIEYNLKtGERKKIDILIKPKAKLKAFTQKLTNITEKMLEDKPSIEQAFK 506
************************************************98754367899************************************* PP
TIGR01405 262 klkeflkdavlvahnasfDlgflktkfekvnleelenpviDtLelaralnpeyksyrLgeiakklevelee..ahradyDaealakvfkvlveelk 355
+++e++kda+lvahna+fD++fl+ + ek++ +len++iDtL+++r ++p++ks+rLg++ak+ +++++ ahr dyDa++la+++ ++++e +
MMSYN1_0303 507 QINEIIKDAILVAHNANFDFTFLSYWSEKLGYGKLENTIIDTLTISRIIYPDLKSHRLGSLAKRVNISYDPsiAHRGDYDADILADIYERMLDETR 602
**********************************************************************999*******************9987 PP
TIGR01405 356 ekg.itk...leeln.eklskeeeykklrtkhitilvknqaglknlyklvsislvkyfykrPrilkselk..kkreglligsacsegelfkallsk 444
+k i + +++++ + ++ +y k + h++ilvknqaglk+lyklv s++ +fy+ P+i+k++l k++++ll g +c+++e+f+ + ++
MMSYN1_0303 603 KKIkIITdsdWNKIDpINYADNLNYYKNKGFHTNILVKNQAGLKELYKLVTKSHTTNFYAFPKIFKDDLIqiKQNNNLLFGASCVNSEIFELARTS 698
76555540114556688899999********************************************9972245679******************* PP
TIGR01405 445 kqeeveeiakryDfieiqplaayeeliekekvkdkealkeilkkliklaeklnklvvatgdahylekedkiyrkilvaskglenklnraan..... 535
+ e++++++ +yD+ieiqp++ y++l++++++ d e+lk+i+ ++i++a++ nkl+va++d hy ++e k++r++++++kgl++ + +
MMSYN1_0303 699 TLENLKQAISFYDYIEIQPISVYKNLLQNDSL-DLEQLKQIITNIINIAKQENKLIVASSDCHYTNPELKQIREVYINAKGLGGIRHPLFDfnnrv 793
*****************************999.7******************************************************99888887 PP
TIGR01405 536 ellPelelrtteemleelaflgeek.akeivventnkiadqiee.iqpikeklytPkiegadekvkeltyekakkiYGdpLPeiveqRiekeLksi 629
+ +P+++lrtt+eml+e+ +l+++ ++eiv++n+nkiad+i++ + pik+ l+tPki +++ek+k++ y++ak++YG+ LPeive+R+ekeL si
MMSYN1_0303 794 KDYPDQHLRTTKEMLNEFEWLNDDDlINEIVITNSNKIADMIDSnVIPIKDGLFTPKIANVNEKLKDKCYQTAKQMYGEMLPEIVEKRLEKELGSI 889
79********************9998*****************99*************************************************** PP
TIGR01405 630 iknGfaviYlisqkLvkksledGYlvGsRGsvGsslvatllgitevnpLaPhYlCpkCkyselvedesvdsGfDlpdkdCpkCgaplkkdGqdiPf 725
k+Gfa++Y+is++Lvk+sl+dGYlvGsRGsvGss+vat+ +itevnpL hY+C +Ckys++++d +++ G+Dlp+k+Cp C+++l dG+diPf
MMSYN1_0303 890 TKHGFAIVYWISHLLVKQSLDDGYLVGSRGSVGSSFVATMAQITEVNPLKAHYRCLNCKYSDFNTDPTYKCGYDLPEKNCPDCNQKLIGDGHDIPF 985
************************************************************************************************ PP
TIGR01405 726 etflGfkgDkvPDiDLnfsgeyqakahnyvkelfGeektfraGtigtvaektaygyvkkYlekkskkl...rdaeverlvqkltgvkRttGqhPGG 818
etflGf+gDkvPDiDLnfsgeyq++ahn++k++fGe+++fraGti+tvaekta+gyvk Y+e+++k++ r++e++rl++ + gvkRttGqhPGG
MMSYN1_0303 986 ETFLGFDGDKVPDIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAEKTAFGYVKTYFEETKKDVslpRKTEINRLAKLAQGVKRTTGQHPGG 1081
**************************************************************88776644489*********************** PP
TIGR01405 819 iivvPkekdvydftPvqyPadDtnsewktthfdfesihdnllklDiLGhDdPtvlkmLkdltgidpkeiPmdDkevlkifssvkaLgvkpeeil.e 913
ii++P+e+++ dftPv+yPadD ns+wktthfdf+sihdnllk+DiLGhDdPt+lkmL+dlt+idp +iP+dDk+v ++fss +aL++++++i+ e
MMSYN1_0303 1082 IIILPNEYEIEDFTPVNYPADDLNSTWKTTHFDFHSIHDNLLKMDILGHDDPTALKMLRDLTNIDPITIPTDDKNVYSLFSSLQALNLTSDKINdE 1177
*********************************************************************************************989 PP
TIGR01405 914 ktGalgiPefGtkfvRgmleetkPktfadLvrisGLshGtdvWlgnaqeliksgiaeLkdviacRDDimvyLikkglepklafkimekvRkGkalk 1009
tGa+giPefGt fvR+ml+et+PktfadLv+isGLshGtdvWlgna++lik+++a++++vi+cRDDimvyLi+ gle +laf ime+vRkGk+lk
MMSYN1_0303 1178 ITGAIGIPEFGTGFVRNMLKETQPKTFADLVQISGLSHGTDVWLGNARDLIKDKKADISTVIGCRDDIMVYLINMGLESSLAFMIMESVRKGKGLK 1273
9*********************************************************************************************** PP
TIGR01405 1010 eaeeeeelkenkvpewyiesckkikYlfPkahaaaYvlmalriayfkvyyPleyYaayfsirakefDlevlkkgkeaikkklkeleere..ekkas 1103
+e++ +k+ +vp+wyi+sc kikY+fPkaha+aYvlma+ria++k+yyP eyYa+y+++ra+ fDl++ g +a+ klk ++r +k+s
MMSYN1_0303 1274 -KEWIDVMKQYNVPDWYIDSCLKIKYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLTTRADVFDLKTALGGYDAVLLKLKSQQQRVknGEKLS 1368
.5****************************************************************************9999999998766889** PP
TIGR01405 1104 kkekdlltvleivlemleRGfklekidleksqateflie...kds..lipPfiaidGlGetvaksiveareekeflsvedlkkrtkisktlieklk 1194
kke dl v+e++lem++RG+k+++id+eks+at+f ++ ++s +ipPf++id lGe+va si++ar+ k+++sv+dlk+rt+ ++t+i+ ++
MMSYN1_0303 1369 KKEEDLEVVYEVLLEMFARGIKFSNIDFEKSEATKFKVDilqDNSkiIIPPFNVIDSLGEAVALSIINARNTKPITSVNDLKNRTQTTQTQIKIFE 1464
************************************6653324447899*********************************************** PP
TIGR01405 1195 elgvleelpeteqls 1209
e+++l++l+ +eql
MMSYN1_0303 1465 EFNILDSLSVDEQLA 1479
************986 PP
>> TIGR00594 polc: DNA polymerase III, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.7 0.0 0.33 2.4e+02 971 1022 .] 213 264 .. 200 264 .. 0.79
2 ! 23.3 0.0 4.5e-09 3.4e-06 2 78 .. 341 428 .. 340 447 .. 0.79
3 ? -2.7 0.2 0.32 2.4e+02 214 270 .. 469 524 .. 463 531 .. 0.82
4 ! 87.0 3.6 2.7e-28 2e-25 78 383 .. 628 940 .. 595 948 .. 0.80
5 ! 9.8 0.0 5.5e-05 0.041 383 441 .. 981 1039 .. 980 1053 .. 0.93
6 ! 26.8 0.0 4e-10 3e-07 491 633 .. 1059 1213 .. 1044 1233 .. 0.75
7 ! 23.1 5.3 5.3e-09 3.9e-06 744 783 .. 1297 1336 .. 1289 1344 .. 0.93
8 ! 7.0 0.9 0.00039 0.29 777 871 .. 1366 1465 .. 1343 1477 .. 0.81
Alignments for each domain:
== domain 1 score: -2.7 bits; conditional E-value: 0.33
TIGR00594 971 valedlevrekekvlvlgvlasvkkkikkkngkkmalltleDetgkievvvf 1022
+ l+v+++++ +v+ ++ k+ + +k+g+k+ ++++D + +i ++ f
MMSYN1_0303 213 SYNSLLDVEDDAQNIVIQGMVINKEFKLSKTGRKIFYIDITDFQSSIRCMYF 264
45566777888888888888888888889******************99987 PP
== domain 2 score: 23.3 bits; conditional E-value: 4.5e-09
TIGR00594 2 vhLhvHseyslldgaakikelvkkakelgmkalaltDhgnlfGavefykaak........kegikpiiGvelyvatdsrfdkkk...k 78
v+Lh H++ s++dg++ + ++ +++ + ka+a+tDh+n+ ++yka++ ++ ik+i G+e+++ +++ k+ +
MMSYN1_0303 341 VELHAHTKMSVMDGVSDPIDYLELISSWNHKAIAFTDHTNVQAFPDIYKALNsinkkrsdQDKIKAIYGLEMNMLNNDLWYVKNpknQ 428
79****************9**********************9999999876322222222578************9998777653222 PP
== domain 3 score: -2.7 bits; conditional E-value: 0.32
TIGR00594 214 eillaiqtgktlsdekrlkfksdelylksaeemaelfadipealentveiaekcelv 270
+i + i+ +++l+ ++ ++ e l + + + f++i+e +++++ +a+ + +
MMSYN1_0303 469 KIDILIKPKAKLKAFTQKLTNITEKMLEDKPSIEQAFKQINEIIKDAILVAHNAN-F 524
56666778888888888777888999999*********************99887.4 PP
== domain 4 score: 87.0 bits; conditional E-value: 2.7e-28
TIGR00594 78 kekeathlillakneeGyrnLlklsslaylegfyykpridkelleey..seGlivlsaclkGeveqallkgeeeeaeeaalkyk..elfgddyylelq 171
+++ +h +l kn+ G++ L kl +++++ fy++p+i k+ l + ++ l+ ++c + e+ +++++++ e+ ++a+ +y e+ y +l
MMSYN1_0303 628 YKNKGFHTNILVKNQAGLKELYKLVTKSHTTNFYAFPKIFKDDLIQIkqNNNLLFGASCVNSEIFELARTSTLENLKQAISFYDyiEIQPISVYKNLL 725
567889*********************************9999987511578**************************99987722555566999999 PP
TIGR00594 172 dhgl...eeeevvnealvklakelgiplvatnDvhyiekedaeaheillaiq....tgktlsdekrlkfksdelylksaeemaelfad.......ipe 255
++++ e+ +++ ++++++ak+ + +va+ D+hy+++e ++ +e+ ++ + ++ l d ++ + +++l++++em + f+ +
MMSYN1_0303 726 QNDSldlEQLKQIITNIINIAKQENKLIVASSDCHYTNPELKQIREVYINAKglggIRHPLFDFNNRVKDYPDQHLRTTKEMLNEFEWlndddliNEI 823
9887333445667789********************************9997322245666666666667789*************986455663344 PP
TIGR00594 256 alentveiaekcel.vevklgepllPeyqipedkkskeeyleelaeeGLkerlkaeeerakeraeykerlelEleviekmgfagYfLivwdfikyakd 352
+++n+ +ia+ +++ v + + P + + +e l++++++ k+ + + +++rle+El i+k gfa + i ++k + d
MMSYN1_0303 824 VITNSNKIADMIDSnVIPIKDGLFTP------KIANVNEKLKDKCYQTAKQMYGEML-----PEIVEKRLEKELGSITKHGFAIVYWISHLLVKQSLD 910
56677777777765334444445555......4444455588999999999998877.....4456679***************************** PP
TIGR00594 353 kgipvGpGRGsaagslvayalkitdidPlky 383
g vG+ RGs ++s va + +it+++Plk
MMSYN1_0303 911 DGYLVGS-RGSVGSSFVATMAQITEVNPLKA 940
******6.*********************85 PP
== domain 5 score: 9.8 bits; conditional E-value: 5.5e-05
TIGR00594 383 ydllFERFlnPERismPDiDiDfcqerRdevieyvaekyGkdkvaqiitfgtlkaKavl 441
+d+ FE Fl + +PDiD++f e ++ ++ ++++G+++v t t++ K++
MMSYN1_0303 981 HDIPFETFLGFDGDKVPDIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAEKTAF 1039
8899******************************************9999999999875 PP
== domain 6 score: 26.8 bits; conditional E-value: 4e-10
TIGR00594 491 kelidiarklEglnrnagvHAagvvi..skepltdlvPlykdkes...gaivtqysmkavEevgllKmDFLGLktLtliksalelikkkkgkikld 581
e+ +a+ g++r++g H +g++i + +++d++P+ + ++ t ++ +++ + +llKmD LG t +k +l ++d
MMSYN1_0303 1059 TEINRLAKLAQGVKRTTGQHPGGIIIlpNEYEIEDFTPVNYPADDlnsTWKTTHFDFHSIHD-NLLKMDILGHDDPTALKMLRDLT-------NID 1146
56667788889***************877789*******99877521145679999999987.7********99999887666553.......466 PP
TIGR00594 582 lksiplddkktfkllqe.......gd........ttgvFqlesrgmkdllkrlkPdslediiavlAL 633
+ip+ddk++++l+++ +d ++g+ + ++ ++++lk+ +P+++ d++ + L
MMSYN1_0303 1147 PITIPTDDKNVYSLFSSlqalnltSDkindeitgAIGIPEFGTGFVRNMLKETQPKTFADLVQISGL 1213
6788888888888765411122221111112111468888999999999999999999999998776 PP
== domain 7 score: 23.1 bits; conditional E-value: 5.3e-09
TIGR00594 744 eYgFnksHaaaYalisyqtaylKanypaeflaalltseid 783
+Y F k+Ha+aY l++y++a+ K +yp+e+ a+ lt+ d
MMSYN1_0303 1297 KYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLTTRAD 1336
69**********************************9987 PP
== domain 8 score: 7.0 bits; conditional E-value: 0.00039
TIGR00594 777 lltseiddkekvakyieeakklgievlpPdinkseq.eFeve..eka...iryglgaikgvGeevvksiieeRekegkfksladfiervdlkkvnk 866
+l+ + +d e v + + e + gi+ d kse +F+v +++ i ++ i ++Ge v+ sii++R+ ++ +s++d+ +r+++++ +
MMSYN1_0303 1366 KLSKKEEDLEVVYEVLLEMFARGIKFSNIDFEKSEAtKFKVDilQDNskiIIPPFNVIDSLGEAVALSIINARN-TKPITSVNDLKNRTQTTQTQI 1460
5677778888888888888888888888888888642575431122245588899*******************.9***************99999 PP
TIGR00594 867 kvlEa 871
k E+
MMSYN1_0303 1461 KIFEE 1465
98886 PP
>> TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 108.6 3.8 9.6e-35 7.2e-32 6 214 .. 432 656 .. 427 659 .. 0.86
2 ? -3.1 0.0 1.4 1.1e+03 148 189 .. 1360 1400 .. 1350 1415 .. 0.65
Alignments for each domain:
== domain 1 score: 108.6 bits; conditional E-value: 9.6e-35
TIGR00573 6 ldtfttfdnettglkakkd.iIeigAveiinrrliinkfetyikpdrkikpdaikihgitddmLkdkpdfkevaedfadyikgkvLvihnasfDvgFl 102
+ fd+ettgl+ + d iIe gA+e + +k+ ++ikp+ k+k+ k++ it+ mL+dkp++ + + + ik+++Lv+hna+fD Fl
MMSYN1_0303 432 DARMVFFDLETTGLSPELDeIIEFGAIEYNLKTGERKKIDILIKPKAKLKAFTQKLTNITEKMLEDKPSIEQAFKQINEIIKDAILVAHNANFDFTFL 529
5567889***********99********7777778899************************************************************ PP
TIGR00573 103 naefkkllkkekkkndvidvldllqvvrkefpgkrntldalakryeienskRalhgaladAfilaelylvmtekqlklaeneg............... 185
+ kl k +n++id+l + +++++ ++ +r+ a+ ++ + s ++h+ dA ila++y m+ + k ++++
MMSYN1_0303 530 SYWSEKLGYG-KLENTIIDTLTISRIIYPDLKSHRLGSLAKRVNISYDPS--IAHRGDYDADILADIYERMLDETRKKIKIITdsdwnkidpinyadn 624
**99988544.79*********************9988888888888888..*****************99887766663333344555567777777 PP
TIGR00573 186 ...qqekvehakksivkkdsllklikavstel 214
++k h++ +++++++l++l k+v +++
MMSYN1_0303 625 lnyYKNKGFHTNILVKNQAGLKELYKLVTKSH 656
77778888888888888888888888888776 PP
== domain 2 score: -3.1 bits; conditional E-value: 1.4
TIGR00573 148 eienskRalhgaladAfilaelylvmtekqlklaeneg.qqek 189
+++n l + + d +++ e++l m ++++k n+ ++++
MMSYN1_0303 1360 RVKNG-EKLSKKEEDLEVVYEVLLEMFARGIKFS-NIDfEKSE 1400
55555.4455667889999999999999999988.55433333 PP
>> TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -5.5 5.3 2.6 2e+03 546 587 .. 278 318 .. 62 424 .. 0.66
2 ! 105.1 0.3 9.8e-34 7.3e-31 3 157 .. 436 593 .. 434 612 .. 0.90
Alignments for each domain:
== domain 1 score: -5.5 bits; conditional E-value: 2.6
TIGR01407 546 esekklkelldelnkllqivselehkvldqLekfdlalktdf 587
e e k+ke+++ +++ qi + +++k +L+ +d+ +++ +
MMSYN1_0303 278 EDELKSKEIQQIKENKIQINDWISVKGKTSLSIYDQ-EQIFY 318
222333444444444444444444444444444444.11111 PP
== domain 2 score: 105.1 bits; conditional E-value: 9.8e-34
TIGR01407 3 aVvDlEtTgtsssedkIIqiGivl..vedgeivetfatdvnpneeippfIqeLTgisdeqlkqAPeFsqvaqeiydlledgiFVAHNvhFDlnllake 98
+ DlEtTg s+ d+II++G++ ++ ge ++ ++p+ ++++f q+LT i++++l+ P +q ++i ++++d+i VAHN++FD+ +l
MMSYN1_0303 436 VFFDLETTGLSPELDEIIEFGAIEynLKTGER-KKIDILIKPKAKLKAFTQKLTNITEKMLEDKPSIEQAFKQINEIIKDAILVAHNANFDFTFLSYW 532
678********989*******98522444443.566789*********************************************************** PP
TIGR01407 99 lkeeglellevpviDTvelariflPteesykLseLseelglehen..pHrAdsDAkvTAeL 157
++ g++ le+ +iDT+ ++ri++P+ +s++L +L+++ +++++ +Hr d DA + A++
MMSYN1_0303 533 SEKLGYGKLENTIIDTLTISRIIYPDLKSHRLGSLAKRVNISYDPsiAHRGDYDADILADI 593
******************************************985449********99986 PP
>> TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 101.4 0.4 1.8e-32 1.3e-29 1 186 [. 434 615 .. 434 655 .. 0.89
Alignments for each domain:
== domain 1 score: 101.4 bits; conditional E-value: 1.8e-32
TIGR01406 1 ReiiLDtettGldakegdRiveigavelvdrkltgkefhvYvkPerdieaeaakvhGltseflkdkPkfkeiadefldfikdaelvihnaeFDvgFln 98
R + D ettGl ++ d i+e+ga+e ++ + k++ + +kP+ +++a +k++ +t+++l+dkP+ ++ +++ + ikda+lv+hna+FD Fl
MMSYN1_0303 434 RMVFFDLETTGLSPEL-DEIIEFGAIEYNLKTGERKKIDILIKPKAKLKAFTQKLTNITEKMLEDKPSIEQAFKQINEIIKDAILVAHNANFDFTFLS 530
78999********986.77********999999999************************************************************** PP
TIGR01406 99 aelerlgkkikkisdlekviDtlalarelfPGkk.nsLDaLCkRfkvdnskRqlhgallDaelLaevYlaltggqeslleeaaeeeeea 186
+ e+lg ++k++ ++iDtl+++r ++P k + L L kR +++ + h Da++La++Y + ++ ++ +++++ +
MMSYN1_0303 531 YWSEKLG--YGKLE--NTIIDTLTISRIIYPDLKsHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDETRKKIKIITDSDWNK 615
*******..88777..89*************965268********************************99988888777766665544 PP
>> TIGR01298 RNaseT: ribonuclease T
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.3 0.0 1.2e-07 9.1e-05 72 190 .. 486 599 .. 430 608 .. 0.72
Alignments for each domain:
== domain 1 score: 20.3 bits; conditional E-value: 1.2e-07
TIGR01298 72 dlddplrlaveeklaleeifkvvrkalkasgckrailvahnaafdlgflnaavkrtalkrnpfhpfavfdtatlaGlayGqtv...lakavqaagldf 166
+l + e+k ++e+ fk++ + +k+ ailvahna+fd +fl ++ ++ + + ++ dt t++ ++y l ++ ++ +
MMSYN1_0303 486 KLTNITEKMLEDKPSIEQAFKQINEIIKD-----AILVAHNANFDFTFLSYWSEKLGYGKL---ENTIIDTLTISRIIYPDLKshrLGSLAKRVNISY 575
34444455667888888888888888775.....9****************9999999774...56899**********87651115556677789** PP
TIGR01298 167 dakeahsalydtektaelfceivn 190
d ah yd++ a+++ + +
MMSYN1_0303 576 DPSIAHRGDYDADILADIYERMLD 599
*************99999987765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1482 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 257 (0.0572638); expected 89.8 (0.02)
Passed bias filter: 97 (0.0216132); expected 89.8 (0.02)
Passed Vit filter: 13 (0.00289661); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.30
# Mc/sec: 7094.05
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0303 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0304 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0304.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0304/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0304 [L=342]
Description: cdsA transferase 3=Putative Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (342 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 325 (0.0724153); expected 89.8 (0.02)
Passed bias filter: 76 (0.016934); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 2584.88
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0304 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0305 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0305.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0305/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0305 [L=358]
Description: metallopeptidase family M24 2=Generic Proteolysis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.4e-32 109.5 0.4 8.6e-32 108.5 0.4 1.5 1 TIGR00500 met_pdase_I: methionine aminopeptidase, type I
2.2e-19 67.8 0.0 3.1e-19 67.3 0.0 1.2 1 TIGR02993 ectoine_eutD: ectoine utilization protein EutD
1.4e-12 45.8 0.4 2.1e-12 45.1 0.4 1.2 1 TIGR00501 met_pdase_II: methionine aminopeptidase, type II
0.001 15.8 0.1 0.0058 13.3 0.1 1.9 2 TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa
Domain annotation for each model (and alignments):
>> TIGR00500 met_pdase_I: methionine aminopeptidase, type I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 108.5 0.4 7.7e-35 8.6e-32 3 204 .. 130 323 .. 128 348 .. 0.92
Alignments for each domain:
== domain 1 score: 108.5 bits; conditional E-value: 7.7e-35
TIGR00500 3 lkskeeieklrkagelvaevlellerevkpGvstkeldkiakdfiekkgAksafkgykgfpgsvCiSvNevviHGipdkkvlkdgDivniDvgveldG 100
+k + ei++++ka+ ++ +v + + +kpG++ k+l++ + d + gA f + vN + H +p++kv+++ ++++iD+g ++G
MMSYN1_0305 130 IKDDWEIANIKKACDITDQVFQAALDFIKPGITEKQLQRFIDDKFLEFGAD-----KISFDTIIASGVNGSMPHAVPSDKVINNNELITIDMGCFYNG 222
78899**********************************999999999885.....678*************************************** PP
TIGR00500 101 yygDtaktllvgkvseeaeklleatkealkkaieeikvgkrikeiskaiektaeekgfsvv.keytGHGiGrklHeepeilnyakketnvrlkeGmvi 197
y +D+++t+ +g+v+++ + +++ ea + +i+ +k g ++i k++++++++kg+ + GHGiG ++Heep++ + +lke m+i
MMSYN1_0305 223 YCSDQTRTIALGDVDPKLVEIYNIVYEAQSLGISLVKEGVIAGDIHKQVYDFIDKKGYGKYfDHGLGHGIGVEIHEEPSVGSTG----SEVLKENMTI 316
**********************************************************76505557*************97654....568******* PP
TIGR00500 198 aiEPmvn 204
+iEP +
MMSYN1_0305 317 TIEPGIY 323
****876 PP
>> TIGR02993 ectoine_eutD: ectoine utilization protein EutD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 67.3 0.0 2.8e-22 3.1e-19 154 388 .. 126 354 .. 76 357 .. 0.88
Alignments for each domain:
== domain 1 score: 67.3 bits; conditional E-value: 2.8e-22
TIGR02993 154 wqravksetelkymrkaakivekmhqrilervepgmrkcdlvadiydagirgvdgfggdypaivpllpsgadasaphltwddkplkvgegtffeiagv 251
r +k + e+ ++ka+ i +++ q l+ ++pg+ +l i d + +fg d + ++ sg++ s ph dk ++ e +++
MMSYN1_0305 126 KIRMIKDDWEIANIKKACDITDQVFQAALDFIKPGITEKQLQRFIDDKFL----EFGADKISFDTIIASGVNGSMPHAVPSDKVINNNELITIDMGCF 219
4689*************************************999988654....79****************************************** PP
TIGR02993 252 ykryhvplsrtvflgkptqafldaekavlegleaglevakpgntcediakaffavlkk..ygiekdsrtgypiglsyppdwgertmslrpgdktvlkp 347
y+ y +rt+ lg ++++ + v e g+++ k g ++di k ++ ++k yg d g+ ig+ s+ + vlk+
MMSYN1_0305 220 YNGYCSDQTRTIALGDVDPKLVEIYNIVYEAQSLGISLVKEGVIAGDIHKQVYDFIDKkgYGKYFDHGLGHGIGVEIHE-----EPSVGSTGSEVLKE 312
****************************************************999977336667789999999987653.....3467778899**** PP
TIGR02993 348 gmtfhfmtglwledlg.leitesilitetgveclssvprkll 388
+mt+ + +g+++ dlg + i + +l+t+tg + l+s pr ll
MMSYN1_0305 313 NMTITIEPGIYIPDLGgVRIEDDVLVTKTGCKLLTSSPRILL 354
**************95499********************876 PP
>> TIGR00501 met_pdase_II: methionine aminopeptidase, type II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.1 0.4 1.9e-15 2.1e-12 8 188 .. 139 319 .. 131 325 .. 0.82
Alignments for each domain:
== domain 1 score: 45.1 bits; conditional E-value: 1.9e-15
TIGR00501 8 likaGkilkkvrreaaekivpGlkllevaefvenrirelGaeP.afPanis..inevaahftpkagdetvlkdedvvkldlGahvdGyiadtaitvdl 102
+ ka +i+ +v ++a + i+pG+ ++ f++++ e Ga+ +f + i+ +n h p ++v+++++++ +d+G +Gy d+ t+ l
MMSYN1_0305 139 IKKACDITDQVFQAALDFIKPGITEKQLQRFIDDKFLEFGADKiSFDTIIAsgVNGSMPHAVPS---DKVINNNELITIDMGCFYNGYCSDQTRTIAL 233
345669**********************************986599998854488888887775...689**************************99 PP
TIGR00501 103 ddq...ykellkaakdaletaikeiradvevgeiGkvieeviesygv.kPisnLtGhslaryrlhagksipnvkerdttkleeGevlaie 188
+d+ e+ + + +a +i+ ++ +v g+i k + + i+ g+ k Gh++ ++h +s+ ++ l+e + + ie
MMSYN1_0305 234 GDVdpkLVEIYNIVYEAQSLGISLVKEGVIAGDIHKQVYDFIDKKGYgKYFDHGLGHGIG-VEIHEEPSVGST---GSEVLKENMTITIE 319
988444566667899*****************************8884556667899986.588988887543...33445555555555 PP
>> TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.3 0.0 0.044 50 146 171 .. 147 172 .. 135 183 .. 0.76
2 ! 13.3 0.1 5.2e-06 0.0058 76 171 .. 182 277 .. 161 285 .. 0.77
Alignments for each domain:
== domain 1 score: 0.3 bits; conditional E-value: 0.044
TIGR00495 146 slaleaalrlvkPGkkntevteviek 171
+ +aal +kPG +++++ i+
MMSYN1_0305 147 DQVFQAALDFIKPGITEKQLQRFIDD 172
456789*********99999887764 PP
== domain 2 score: 13.3 bits; conditional E-value: 5.2e-06
TIGR00495 76 iafPtavs..vnnvvghfsPlksdelvlkeGdvvkidlGvhidGfialvahtiviga.eesvtGrkadviaaaslaleaalrlvkPGkkntevtevie 170
i+f t ++ vn + h P sd +v+++ +++ id+G+ +G+ + ++ti +g + ++ v a sl + + v G+ ++v + i+
MMSYN1_0305 182 ISFDTIIAsgVNGSMPHAVP--SD-KVINNNELITIDMGCFYNGYCSDQTRTIALGDvDPKLVEIYNIVYEAQSLGISLVKEGVIAGDIHKQVYDFID 276
67777774347777778777..44.688999************************9536666666666667777777777777778888888888887 PP
TIGR00495 171 k 171
k
MMSYN1_0305 277 K 277
7 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (358 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 160 (0.0356506); expected 89.8 (0.02)
Passed bias filter: 106 (0.0236185); expected 89.8 (0.02)
Passed Vit filter: 13 (0.00289661); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.20
# Mc/sec: 2570.52
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0305 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0308 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0308.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0308/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0308 [L=336]
Description: trpRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-107 356.0 5.7 5.6e-107 355.8 5.7 1.0 1 TIGR00233 trpS: tryptophan--tRNA ligase
Domain annotation for each model (and alignments):
>> TIGR00233 trpS: tryptophan--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 355.8 5.7 1.2e-110 5.6e-107 2 328 .] 3 331 .. 2 331 .. 0.98
Alignments for each domain:
== domain 1 score: 355.8 bits; conditional E-value: 1.2e-110
TIGR00233 2 kkrvltGiqpsGklhlGnylgairtkveqqeevelfiqvaDlhaitvkkltdeealrkaveelvadilAvGlDpekttiflqsevpehselavllskk 99
k+++++Gi+psG+++lGnylg+++ +++ q+e++lfi++a+lhait+++ ++e l+k+++e++a + A+GlD++kttiflqs+v eh +l+++l++
MMSYN1_0308 3 KQIMVSGITPSGTMTLGNYLGVVKRFIQYQNEYDLFIFIANLHAITLPQ--EKEKLKKNTKEIAALYFACGLDINKTTIFLQSDVLEHAQLGWILTTN 98
7899*********************************************..*********************************************** PP
TIGR00233 100 vtlgelkritqfkdks.qeen......vsiGllsypvlqaAdiLlyqadlVPvgeDqkqhleltRdlaerfnkkfkkvfklPelliskffarlmglqd 190
+++gel+r+tqfkdks ++e+ +++Gl++yp+l+aAdiLly+++ VPvg+Dqkqh+e+tRd+a r+n+k++++fk+Pe li+ + ++m+lqd
MMSYN1_0308 99 TSMGELSRMTQFKDKSlKAESingkgyIPTGLFTYPALMAADILLYDPKYVPVGIDQKQHIEITRDIAIRMNNKYGEMFKIPEPLINSE-IKIMDLQD 195
****************7555578999**************************************************************9.89****** PP
TIGR00233 191 ..kKMSkSdpn..saIfLtdepkeikkKikkaatdsgretleeerekpgvpellviyellskeeeddkkleedlekeksgkllygelKkalievlqef 284
kKMSkS+ n + I+++d+ +eik Kik a+tds++ + +++ +kpgv++l++iy l++ ++ ++ ek ++k+ y +lK+++++vl+
MMSYN1_0308 196 ptKKMSKSSTNpkAIITMLDSIDEIKSKIKAAVTDSENLIKYDPINKPGVSNLITIYCQLKNISI------KQAEKHWENKN-YKDLKDDVTQVLIDE 286
********9999899**************************************************......9999******9.*************** PP
TIGR00233 285 lkelqekreevaee.eldkileagakkaretaektlakvkkalGl 328
+ ++q+k++e+ ++ ++++ le ga+kar +a+k l+kv++++Gl
MMSYN1_0308 287 IIPIQTKFKELYNSkQVEQWLELGANKARYIANKKLNKVQNLMGL 331
**********99888*****************************8 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (336 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 299 (0.0666221); expected 89.8 (0.02)
Passed bias filter: 119 (0.0265152); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 2412.55
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0308 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0314 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0314.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0314/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0314 [L=244]
Description: ecfS 2=Generic Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-17 61.5 25.0 1.9e-17 61.5 25.0 1.6 2 TIGR04518 ECF_S_folT_fam: ECF transporter S component, folat
Domain annotation for each model (and alignments):
>> TIGR04518 ECF_S_folT_fam: ECF transporter S component, folate family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 2.0 0.3 0.008 36 101 134 .. 6 39 .. 4 40 .. 0.87
2 ! 61.5 25.0 4.2e-21 1.9e-17 2 158 .. 32 197 .. 31 201 .. 0.76
Alignments for each domain:
== domain 1 score: 2.0 bits; conditional E-value: 0.008
TIGR04518 101 fllllisvvlvevvitlvltplwLqvlygipltl 134
++ +i+v++ + i ++ p L++++ +++t+
MMSYN1_0314 6 TNGAAICVIILLFAIAYMMDPKFLKTITTTKITM 39
56778999*****************999999886 PP
== domain 2 score: 61.5 bits; conditional E-value: 4.2e-21
TIGR04518 2 sdvksLtllalliaLsiiLkrllslqtf.slrisievipvllagiilGpvagaivglaaDlvgliltptgfpflgftlsavlqglipglvyykkk.ke 97
+++ ++t++a+ +aL ++L+++l ++++ r++++++ +l+g+++Gp+ ga+vg+ + g +++p f ++ f+ + ++ +++ +lv+ kk+ ++
MMSYN1_0314 32 ITTTKITMMAMQVALIVLLTNFLGYSGVfGARLMLGNFILFLSGMLFGPMGGALVGALSYTAG-MVNPGIFIHFSFMAAYMIYAMLGSLVFIKKQkSR 128
68999***********************9****************************998776.89*****9**********************4444 PP
TIGR04518 98 kklfllllisvvlvevvitlvltpl........wLqvlygipltlllaiRvikeiimipvdiiliylll 158
+ ++ +++ ++++ + t++ +p+ + ++ ++++++++i + e i+i+ ++ +++l+l
MMSYN1_0314 129 LSFMISVFVLLFIASFTLTFISHPIamlaigknAYVYVTLVKKFIVFPIDAVIEPILIISTFEVSILVL 197
444455555555555555555556674444444333333344444666666666666666666666665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (244 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 401 (0.0893494); expected 89.8 (0.02)
Passed bias filter: 80 (0.0178253); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1668.55
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0314 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0315 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0315.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0315/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0315 [L=50]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (50 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 152 (0.0338681); expected 89.8 (0.02)
Passed bias filter: 83 (0.0184938); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 359.01
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0315 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0316 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0316.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0316/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0316 [L=656]
Description: tkt 5=Equivalog Metabolic process
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-255 847.5 1.1 1.8e-255 847.3 1.1 1.0 1 TIGR00232 tktlase_bact: transketolase
1.6e-19 67.8 3.5 3.1e-14 50.4 0.1 2.9 3 TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
1.8e-11 40.7 0.3 3.4e-10 36.5 0.1 2.5 3 TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring)
4.4e-08 29.8 0.1 2.4e-06 24.1 0.0 2.2 2 TIGR03186 AKGDH_not_PDH: alpha-ketoglutarate dehydrogenase
1.7e-05 21.8 0.0 3.2e-05 20.9 0.0 1.4 1 TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-tran
5.2e-05 20.3 0.0 0.00011 19.2 0.0 1.4 1 TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-tran
Domain annotation for each model (and alignments):
>> TIGR00232 tktlase_bact: transketolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 847.3 1.1 2.4e-258 1.8e-255 2 652 .. 7 653 .. 6 655 .. 0.97
Alignments for each domain:
== domain 1 score: 847.3 bits; conditional E-value: 2.4e-258
TIGR00232 2 klvnairlLavdaiekaksGhpGaplGlapiaevlwkkflklnPtnpkWinRDRfvlsaGhgsmllYsllhllGydlsiedlkqfrqlesktpghPel 99
+++na+r+L v+ai+kaksGhpG+ lG+a i++vl++k +++nP+np+W+nRDRf+lsaGhgs+llYs lhl+Gydlsi+dlkqfrq++sktpghPe
MMSYN1_0316 7 DNLNALRILGVSAINKAKSGHPGIVLGAAGIVYVLFNKIMNFNPKNPEWFNRDRFILSAGHGSALLYSALHLSGYDLSIDDLKQFRQWDSKTPGHPEK 104
5799********************************************************************************************** PP
TIGR00232 100 aetagvevttGPLGqGianavGlalaektlaaefnkesaeivdhytyvlvGDGdlqeGisseaaslaGhlkLgkLivlyDsnkisidgeveksfsedv 197
+ t gvevttGPLGqG++++vG+a+ae++la +nk++++++ hytyvl+GDGdlqeGis+ea s+aG+ kL+kLi ++Dsn++++d++v ++ ed+
MMSYN1_0316 105 TLTCGVEVTTGPLGQGVGMGVGMAVAEAHLASVYNKHDFNLIHHYTYVLCGDGDLQEGISQEAISFAGKHKLNKLILIHDSNDVQLDSNVVDVQIEDM 202
************************************************************************************************** PP
TIGR00232 198 kkRfeaygWevlevedgedleeikkaiekakkskdkPtlikvktiigfgspnkegteevhgaplkeeevkllkkklglnyeeFevpqevydffkkevk 295
+kRf+a +W+ ++v+dgedl++i kai+ka+ s+ kPt i+vktiig gs +k+gt++vhgapl++ ++ ++kk ++++y++F +p++vy++++ ++
MMSYN1_0316 203 HKRFKACNWNTIKVSDGEDLNSIYKAIRKAQLSD-KPTYIEVKTIIGLGS-TKQGTKDVHGAPLND-DITKVKKYFDWDYDDFIIPDSVYKHWSINA- 296
********************************99.***************.*************86.7999*******************7665554. PP
TIGR00232 296 ergekaeeewneklakykkkypelakeferrlsgelpadyekklkefkakkkalatRkaskevlnalakelpellggsaDlarsnltklkeskelken 393
++ge ee wn++ aky kypel + ++++++ ++ d+++ lk +++ atR +s+++++++a++ + l+ggsaDl++s+ +k +++ ++ n
MMSYN1_0316 297 KKGEIEEEYWNQLKAKYSLKYPELSSYLDNAINKNITFDFSSLLKDIP--NNDEATRLSSGKIFEKIANHEKMLIGGSADLSSSTRIKGADNQFTSLN 392
4678888999********************************999988..66779********************************99999989999 PP
TIGR00232 394 algnyiryGvRefamgaimngialhGglkpygatFlvFvdYakpaiRlaaLmklkviyvythDsigvGeDGpthqpveqlaslRaipnlsvwRPaDek 491
++g++i yGvRef+mgai ngia+h gl+p ++ F+vF+dY+kpa+Rla +m+l+++yv+thDsi+vGeDGpthqp+eql++lR+ipn v+RPaD
MMSYN1_0316 393 KTGRNIMYGVREFGMGAINNGIAAHKGLIPVASGFFVFADYLKPAMRLASIMQLQQLYVFTHDSIAVGEDGPTHQPIEQLSMLRTIPNHVVLRPADYS 490
************************************************************************************************** PP
TIGR00232 492 etaaayklales.qdaptvlilsRqnlpqle.esslekvlkGgYvlkdsknPdiiliatGsevelaveaakkLakenikvrvvslpsidlldkqdeeY 587
et a+yk+al++ +++pt +il+Rqn+ ql+ ++ l++v++G+Y+++d+ + + lia+Gsev la++++k+L ++nik++v+s+ s++l+dkqd+eY
MMSYN1_0316 491 ETIACYKVALTKlTKTPTSIILTRQNVRQLQhNDVLNQVERGAYIISDQTDATVSLIASGSEVGLAIDVQKELLNHNIKAKVISMVSTSLFDKQDKEY 588
**********963789***************4555789************************************************************ PP
TIGR00232 588 resvlpanvtllaieasaaleWykyaklegavlgidsfGesakgdkvfekfgFtvenvvakakkl 652
++ ++++n +++aie++++ Wyky++ g v+gid+fGesa++++v+++fgFt en+++k+ +
MMSYN1_0316 589 QNLIINKNTKRIAIEMGSSAIWYKYVGDDGLVFGIDRFGESAPANSVIKEFGFTKENLTNKILEY 653
************************************************************98765 PP
>> TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.2 0.1 9e-07 0.00067 60 182 .. 57 197 .. 9 215 .. 0.64
2 ? 0.1 0.0 0.068 51 244 281 .. 216 253 .. 204 270 .. 0.82
3 ! 50.4 0.1 4.2e-17 3.1e-14 414 615 .. 458 654 .. 348 655 .. 0.77
Alignments for each domain:
== domain 1 score: 16.2 bits; conditional E-value: 9e-07
TIGR00204 60 dkdkliwdvghqa...yahklltGrr...eelstlrqkkGla.gfpkrseseydvlsaGhsstsisaglGiavaael.....kgad.....ekvvavi 140
++d++i gh + y+ l G ++l+ +rq + + g+p + + +++G + +g+G+ava + +++d +++ +
MMSYN1_0316 57 NRDRFILSAGHGSallYSALHLSGYDlsiDDLKQFRQWDSKTpGHPEKTLTCGVEVTTGPLGQGVGMGVGMAVAEAHlasvyNKHDfnlihHYTYVLC 154
4678888888875555777778886511155555666665432566666666667788999999999***9998653222223334111114566799 PP
TIGR00204 141 GdGaltaGmalealnhaGdlk.kdllvilndnemsisenvGal 182
GdG l G+ ea+ aG++k ++l++i + n++ + +nv +
MMSYN1_0316 155 GDGDLQEGISQEAISFAGKHKlNKLILIHDSNDVQLDSNVVDV 197
******************9972567778888999999998654 PP
== domain 2 score: 0.1 bits; conditional E-value: 0.068
TIGR00204 244 PvdGhdlselietlknakklkgPvllhvktkkGkGykl 281
dG dl+++ +++++a+ +P ++ vkt G G
MMSYN1_0316 216 VSDGEDLNSIYKAIRKAQLSDKPTYIEVKTIIGLGSTK 253
569****************************9998654 PP
== domain 3 score: 50.4 bits; conditional E-value: 4.2e-17
TIGR00204 414 ivGadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtal.eydegpialryPrGnavgveltee.ekleiGksellrkge.dilllgfGtlvee 508
vG+dG+thq + +s lr+iPn v++ P d e+ ++al + +++p+++ r n + ++ +++e G + + + + l++ G+ v
MMSYN1_0316 458 AVGEDGPTHQPIEQLSMLRTIPNHVVLRPADYSETIACYKVALtKLTKTPTSIILTRQNVRQLQHNDVlNQVERGAYIISDQTDaTVSLIASGSEVGL 555
59*******************************9999999886267999**********9988887777*******9998765526889********* PP
TIGR00204 509 alevaeelkekgieatvvdlrfvkPldeelikalakeieklvtleen.vllGGvg.sav.aevlsdqnvlvpvkrlgipdefiehgtqeevlaelGld 603
a++v++el +++i+a+v+ + + l + ke+++l++ +++ + +g sa+ + d++ + d+f e + ++v +e+G++
MMSYN1_0316 556 AIDVQKELLNHNIKAKVISMVS-----TSLFDKQDKEYQNLIINKNTkRIAIEMGsSAIwYKYVGDDGLVFGI------DRFGESAPANSVIKEFGFT 642
****************999854.....4444444555555554333212222233033313445555544443......6777899999999999999 PP
TIGR00204 604 teqlaekilall 615
+e+l++kil++l
MMSYN1_0316 643 KENLTNKILEYL 654
999999998876 PP
>> TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.5 0.1 4.5e-13 3.4e-10 102 305 .. 26 232 .. 9 238 .. 0.78
2 ? 1.3 0.0 0.019 14 360 438 .. 219 292 .. 216 368 .. 0.59
3 ? 1.1 0.0 0.022 16 700 771 .. 524 590 .. 459 639 .. 0.74
Alignments for each domain:
== domain 1 score: 36.5 bits; conditional E-value: 4.5e-13
TIGR00759 102 Ghissyasaaelyevgfnhffraksekeg...gd.lvffqghaaPGvyarafleG.rlteeqldnfrqevagdGlssyPhPklmPdfwqfptv....s 190
Gh aa + v fn + + ++ + +d + gh + +y+ l G l+ + l++frq + + +P l + +t+
MMSYN1_0316 26 GHPGIVLGAAGIVYVLFNKIMNFNPKNPEwfnRDrFILSAGHGSALLYSALHLSGyDLSIDDLKQFRQWDSK--TPGHPEKTLTCG-VEVTTGplgqG 120
66666667888888888887654444333334552577899*************955999*******97652..355677777665.35555411123 PP
TIGR00759 191 mGlGPinaiyqarflkylenrglkdtsdqkvyaflGdGemdepeskgaitlaarekldnlvfvincnlqrldGPvrgngkiiqeleslfrGagwnvik 288
+G+G +a+ a++ ++ ++ + y + GdG++ e s+ ai++a+++kl+ l+++ ++n +ld v i+++ f+ +wn ik
MMSYN1_0316 121 VGMGVGMAVAEAHLASVYNKHDFNLIH-HYTYVLCGDGDLQEGISQEAISFAGKHKLNKLILIHDSNDVQLDSNVVDV--QIEDMHKRFKACNWNTIK 215
566677999999999988888887766.789******************************************99754..589*************** PP
TIGR00759 289 vlwgsewdellakdteg 305
v g + ++++++ ++
MMSYN1_0316 216 VSDGEDLNSIYKAIRKA 232
*9999999888776655 PP
== domain 2 score: 1.3 bits; conditional E-value: 0.019
TIGR00759 360 ghdvkkvyaaykaakeakGkptvilaktikGyglgeaaearnvahqvkkleldalkelrdrfelPlsdeqvekleyikf 438
g d + +y a ++a+ + kpt i kti G g ++ ++ + h + l d++ +++ f+ d + + y +
MMSYN1_0316 219 GEDLNSIYKAIRKAQLSD-KPTYIEVKTIIGLG--STKQGTKDVHGAP-L-NDDITKVKKYFDWDYDDFIIPDSVYKHW 292
789999********9877.9*********8865..5556666666543.2.2445555555555544444444444444 PP
== domain 3 score: 1.1 bits; conditional E-value: 0.022
TIGR00759 700 eaeegilkGlyrfeeaeeekakekvqllgsGailrevreaaellakdygvasdvfsvtsfkelaregkdver 771
++ +++ +G y +++ + v l++sG+ + +++ + l + +++++ v s+ s + ++++ k+ +
MMSYN1_0316 524 DVLNQVERGAYIISDQ----TDATVSLIASGSEVGLAIDVQKELLN-HNIKAKVISMVSTSLFDKQDKEYQN 590
3445555665555444....44578999999999988888766655.6899999999887776666555443 PP
>> TIGR03186 AKGDH_not_PDH: alpha-ketoglutarate dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.1 0.0 3.2e-09 2.4e-06 193 303 .. 123 230 .. 10 248 .. 0.76
2 ! 3.8 0.0 0.0043 3.2 695 769 .. 514 585 .. 453 608 .. 0.81
Alignments for each domain:
== domain 1 score: 24.1 bits; conditional E-value: 3.2e-09
TIGR03186 193 igpinaiyqarfmrylqnrglartegrkvwglfgdgemdepesiaalslaarerldnlvfvincnlqrldgpvrgngriideleslfagagwnvikvl 290
+g a+ +a + ++ + ++ + l gdg+++e s a+s+a +++l+ l+++ + n +ld v i+++ +f wn ikv
MMSYN1_0316 123 MGVGMAVAEAHLASVYNKHDFNL-IHHYTYVLCGDGDLQEGISQEAISFAGKHKLNKLILIHDSNDVQLDSNVVDV--QIEDMHKRFKACNWNTIKVS 217
44445666666655444444433.344567889**************************************99754..5899**************** PP
TIGR03186 291 wgsdwdalfarda 303
g d +++++ +
MMSYN1_0316 218 DGEDLNSIYKAIR 230
****999987655 PP
== domain 2 score: 3.8 bits; conditional E-value: 0.0043
TIGR03186 695 qpslpeealdavrsgilkgmyaleaaalalarvrllgsgailgevlaaarllrddwridaevwsvtsfselardg 769
++++ + ++++v++ + +g y ++ +++ a v l+ sg+ +g ++ + l +++i+a+v s+ s s ++++
MMSYN1_0316 514 RQNVRQLQHNDVLNQVERGAYIIS--DQTDATVSLIASGSEVGLAIDVQKELL-NHNIKAKVISMVSTSLFDKQD 585
556666788999*********998..777889*******99998888776554.689*******99988766654 PP
>> TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.9 0.0 4.2e-08 3.2e-05 123 243 .. 116 243 .. 78 246 .. 0.75
Alignments for each domain:
== domain 1 score: 20.9 bits; conditional E-value: 4.2e-08
TIGR03181 123 pigtqvlhAaGvAlalklkg..........ekevavayiGdGgtsegdfyealnfAavfkapvvfvvq.NNqwAISvprskqtaaktlaqkavaagip 209
p+g+ v +G+A+a ++ +++++GdG eg +ea+ fA+ +k++ ++++ N ++ +++ +++ ++ a++ +
MMSYN1_0316 116 PLGQGVGMGVGMAVAEAHLAsvynkhdfnlIHHYTYVLCGDGDLQEGISQEAISFAGKHKLNKLILIHdSNDVQL-DSNVVDVQIEDMHKRFKACNWN 212
566667777777777655445565555544479999*************************97766651566555.455567777889********** PP
TIGR03181 210 gvqv.DGnDvlAvyevvkealekArkgegPtLiEa 243
++v DG D+ +y+++++ A+ ++Pt iE+
MMSYN1_0316 213 TIKVsDGEDLNSIYKAIRK----AQLSDKPTYIEV 243
***99*****999987665....666777777776 PP
>> TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.2 0.0 1.4e-07 0.00011 112 233 .. 117 245 .. 107 248 .. 0.77
Alignments for each domain:
== domain 1 score: 19.2 bits; conditional E-value: 1.4e-07
TIGR03182 112 vgaqvplatGlafaekyk.....ked.....evtlaffGdgavnqGqvyEslnlaalwklP.vifviennkyamGtaverssaekdlakkgesfgikg 198
+g++v +++G+a ae k+d + t++++Gdg ++G E++ +a +kl +i++ + n + + v + +d++k+ ++++ ++
MMSYN1_0316 117 LGQGVGMGVGMAVAEAHLasvynKHDfnlihHYTYVLCGDGDLQEGISQEAISFAGKHKLNkLILIHDSNDVQLDSNVVD-VQIEDMHKRFKACNWNT 213
5777888888887655433343354333333678999***********************83556667789999887765.56689************ PP
TIGR03182 199 lev.dGmdvlavreaakeavervragkgPvllelkt 233
++v dG d+ ++++a+++ ++ ++P+ +e+kt
MMSYN1_0316 214 IKVsDGEDLNSIYKAIRK----AQLSDKPTYIEVKT 245
99989****999876665....56778899998887 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (656 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 235 (0.0523619); expected 89.8 (0.02)
Passed bias filter: 123 (0.0274064); expected 89.8 (0.02)
Passed Vit filter: 15 (0.00334225); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.20u 0.39s 00:00:00.59 Elapsed: 00:00:00.62
# Mc/sec: 1519.43
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0316 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0317 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0317.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0317/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0317 [L=81]
Description: PF03672 family protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.0098 13.5 0.1 0.01 13.5 0.1 1.0 1 TIGR03789 pdsO: proteobacterial sortase system peptidoglycan
------ inclusion threshold ------
0.027 12.5 0.8 0.035 12.1 0.6 1.4 1 TIGR01710 typeII_sec_gspG: type II secretion system protein
Domain annotation for each model (and alignments):
>> TIGR03789 pdsO: proteobacterial sortase system peptidoglycan-associated protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.5 0.1 4.6e-06 0.01 47 99 .. 7 60 .. 4 80 .. 0.68
Alignments for each domain:
== domain 1 score: 13.5 bits; conditional E-value: 4.6e-06
TIGR03789 47 lgsGallGavVgGPvGaii.ggitGgligqavandealkqaqseiakqeqqlva 99
+++Gal G ++g + aii g i G +i++++++++ + + ++ + ++
MMSYN1_0317 7 FSAGALAGMLIGVIIAAIIiGLILGFVITRYMVKKQLKDNPPITEKQIRAMYMS 60
789*************98626678999999999998433333333333333333 PP
>> TIGR01710 typeII_sec_gspG: type II secretion system protein G
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.1 0.6 1.5e-05 0.035 5 45 .. 16 57 .. 13 70 .. 0.81
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 1.5e-05
TIGR01710 5 LleilvvlvilGlLaalvvPkllsrkd.kakaqkakadikal 45
L+ +++ +i+Gl+++ v+ +++ +k+ k + ++ +i+a+
MMSYN1_0317 16 LIGVIIAAIIIGLILGFVITRYMVKKQlKDNPPITEKQIRAM 57
89999****************998776245556677777766 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (81 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 466 (0.103832); expected 89.8 (0.02)
Passed bias filter: 251 (0.0559269); expected 89.8 (0.02)
Passed Vit filter: 36 (0.00802139); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 581.60
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0317 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0325 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0325.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0325/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0325 [L=496]
Description: membrane protein, putative 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (496 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 457 (0.101827); expected 89.8 (0.02)
Passed bias filter: 56 (0.0124777); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 3561.39
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0325 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0326 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0326.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0326/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0326 [L=253]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (253 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 180 (0.040107); expected 89.8 (0.02)
Passed bias filter: 46 (0.0102496); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1912.20
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0326 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0327 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0327.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0327/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0327 [L=278]
Description: scpA? 2=Generic Chromosome segregation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (278 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 275 (0.0612745); expected 89.8 (0.02)
Passed bias filter: 57 (0.0127005); expected 89.8 (0.02)
Passed Vit filter: 1 (0.000222816); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 2217.89
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0327 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0328 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0328.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0328/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0328 [L=209]
Description: segregation and condensation protein B 5=Equivalog Chromosome segregation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.1e-37 125.0 3.7 7.4e-37 124.7 3.7 1.0 1 TIGR00281 TIGR00281: segregation and condensation protein B
Domain annotation for each model (and alignments):
>> TIGR00281 TIGR00281: segregation and condensation protein B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 124.7 3.7 1.7e-40 7.4e-37 2 175 .. 5 182 .. 4 192 .. 0.91
Alignments for each domain:
== domain 1 score: 124.7 bits; conditional E-value: 1.7e-40
TIGR00281 2 lkaiiealLfvsgekGvtlreLlkilkkekveklnailelledklsrDte.GiEiikv.gesyslstkkefkdylkklveaklkn.lnsaslevLAii 96
+ aiie+lLf+ g++Gv+l +++++l++ k +++ i+ +l++k+ D + i + ++y+l+tk+e+++y kl + + ++ l++ ++evL ii
MMSYN1_0328 5 YSAIIEGLLFIYGDDGVSLLDIQTVLDNLKPTEIKEIIIELNKKYLADPSsAFCIQTYkKNNYRLQTKPELHEYFAKLEQYNENKkLSHSTIEVLSII 102
679***************************************99999988677777763468***************987655444************ PP
TIGR00281 97 aykqPitraeieeiRGvksyqivddLvekelvvelGrkdtpGRsiiyevtekFlelFglds.ldelPkleefalkkvkqe 175
aykqPit+ +i eiR v+s ++ +L ek+l++ +G+ ++ Rs +y++t++F++ F+++ ++elP + + + k+ ++
MMSYN1_0328 103 AYKQPITKQQIDEIRNVDSTYQLYKLREKKLIKVVGKDLENNRSNLYGITDNFFKVFNIKGgIEELPTISDDDIKQAIEN 182
***********************************************************9549*********99987755 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (209 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 324 (0.0721925); expected 89.8 (0.02)
Passed bias filter: 108 (0.0240642); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1500.66
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0328 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0329 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0329.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0329/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0329 [L=252]
Description: Ribosomal large subunit pseudouridine synthase B 4=Probable rRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-40 134.7 0.4 9.2e-40 134.0 0.4 1.3 1 TIGR00093 TIGR00093: pseudouridine synthase
1.2e-06 26.0 1.7 2.7e-05 21.6 1.7 2.5 1 TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
0.0015 15.8 0.5 0.0015 15.8 0.5 1.7 3 TIGR00478 tly: TlyA family rRNA methyltransferase/putative h
------ inclusion threshold ------
0.013 13.7 0.5 0.036 12.2 0.5 1.8 1 TIGR02988 YaaA_near_RecF: S4 domain protein YaaA
Domain annotation for each model (and alignments):
>> TIGR00093 TIGR00093: pseudouridine synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 134.0 0.4 8.2e-43 9.2e-40 1 160 [. 71 232 .. 71 233 .. 0.94
Alignments for each domain:
== domain 1 score: 134.0 bits; conditional E-value: 8.2e-43
TIGR00093 1 nKPkgvlsskdDpekrkvvkdlleklrgkklaavGRLDrdseGlllltddgelqhrlthpekevektYlvqvegsvtdedlealrkGvkle.dektkp 97
+KP+ vl+++ Dp+krk+v+d + l +++++vGRLD d +Glll+t+dg l++ ++hp++e ktY +g+v+++++++l kGv ++ d+ tk+
MMSYN1_0329 71 YKPRLVLTTMYDPKKRKTVNDYFKDL-NHRVYPVGRLDYDVSGLLLMTNDGVLSNFIMHPKYEFLKTYQGLCQGQVNKQQINQLIKGVYIDnDYLTKA 167
79*******************99888.89*************************************************************72577888 PP
TIGR00093 98 aklklikepel.kt.klrvtlteGrnrqvrRltaavglevlrLvRvrigdvslegLeeGewreLt 160
+kl+k +l +t +++t++eG+ + v+++++++ ++ l+L+R++i ++++++L++G++reL+
MMSYN1_0329 168 YSAKLVKYDKLkNTsIVELTINEGKKHHVKKMFESIQAQLLKLKRTKIEFLEIADLKPGQYRELK 232
8999998877744579***********************************************96 PP
>> TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.6 1.7 2.4e-08 2.7e-05 6 236 .. 4 206 .. 1 211 [. 0.75
Alignments for each domain:
== domain 1 score: 21.6 bits; conditional E-value: 2.4e-08
TIGR00005 6 qrldevlaselkdlsrskikklieegqVkvnkkkvtanlklkikdgdlvtveveeeeeaevpvedkpldilfeDedilvidKPsglvvhptggyeknt 103
+rl +v++s+ sr +++kli e++Vkvn +++++ l +ki ++ ++++++ +++ +++ + KP+ + + + +t
MMSYN1_0329 4 ERLQKVISSRGY-CSRRAAEKLILENRVKVN-DQIINTLGVKIDPKAEIKIDNKL-VLSDSNNQK----------YYYLFYKPRLVLTTMYDPKKRKT 88
578888888777.9*****************.8999**9***********77777.333333333..........356678*****999999999999 PP
TIGR00005 104 vlnallahlkeelvsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefkskegtvdaplarvenkkglvavakssgkeavTv 201
v + + ++ r+++v RLD d SGll++ l + + + + k+Y++l +g++++ ++++ ++ v ++ + k + +
MMSYN1_0329 89 VNDYFKDLNH-----RVYPVGRLDYDVSGLLLMTNDG-VLSNFIMHP-KYEFLKTYQGLCQGQVNK--QQINQLIKGVYIDNDYLT------KAYSAK 171
9999988888.....8***************997654.344444443.456789********9994..458887776655554443......333444 PP
TIGR00005 202 fkvlerdekaslvelkllTGRtHQiRVHlqylghp 236
+ +++s+vel + G H + +++++ +
MMSYN1_0329 172 LVKYDKLKNTSIVELTINEGKKHHVKKMFESIQAQ 206
55566678888888888888888887776666655 PP
>> TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.8 0.5 1.4e-06 0.0015 1 51 [. 5 54 .. 5 65 .. 0.88
2 ? -2.6 0.0 0.58 6.5e+02 173 217 .. 129 170 .. 120 183 .. 0.56
3 ? -3.0 0.1 0.8 8.9e+02 193 193 .. 191 191 .. 147 220 .. 0.56
Alignments for each domain:
== domain 1 score: 15.8 bits; conditional E-value: 1.4e-06
TIGR00478 1 rLdvlLvkrglvesRekakrlilkgevlvnkkkvdkPsalvdkdakielvq 51
rL+ ++ +rg++ sR+ a++lil + v+vn++ ++ ++++d +a+i++ +
MMSYN1_0329 5 RLQKVISSRGYC-SRRAAEKLILENRVKVNDQIINTLGVKIDPKAEIKIDN 54
788889999998.67789**************************9999754 PP
== domain 2 score: -2.6 bits; conditional E-value: 0.58
TIGR00478 173 pqFevgrekknkkgvvkdkeaiaevlekviekle.skdfqvkkilk 217
p++e+ + ++g+ ++ ++ ++ ++++i+ ++ +d+ +k +
MMSYN1_0329 129 PKYEFLK---TYQGLCQG-QVNKQQINQLIKGVYiDNDYLTKAYSA 170
5566655...55566665.555555555554433144555555444 PP
== domain 3 score: -3.0 bits; conditional E-value: 0.8
TIGR00478 193 a 193
+
MMSYN1_0329 191 G 191
2 PP
>> TIGR02988 YaaA_near_RecF: S4 domain protein YaaA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.2 0.5 3.2e-05 0.036 29 60 .] 23 54 .. 17 54 .. 0.92
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 3.2e-05
TIGR02988 29 wflqeneVlvNgelenrRgkKlrkgdvieied 60
+ en+V+vN+++ n+ g K+ ++ i+i++
MMSYN1_0329 23 KLILENRVKVNDQIINTLGVKIDPKAEIKIDN 54
5789*************************986 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (252 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 281 (0.0626114); expected 89.8 (0.02)
Passed bias filter: 113 (0.0251783); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1723.25
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0329 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0330 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0330.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0330/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0330 [L=205]
Description: dgk 4=Probable Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4e-07 28.2 2.0 0.0072 14.3 0.0 2.3 2 TIGR02173 cyt_kin_arch: putative cytidylate kinase
4.9e-07 27.6 3.1 0.00011 19.9 0.3 2.4 2 TIGR00041 DTMP_kinase: dTMP kinase
6.4e-05 20.9 1.8 0.0042 15.0 0.5 2.3 2 TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
0.00018 19.2 3.5 0.00024 18.8 3.5 1.3 1 TIGR00235 udk: uridine kinase
0.0005 17.9 0.4 0.0013 16.5 0.0 1.9 2 TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modific
0.00063 17.4 1.6 0.33 8.5 0.1 2.4 2 TIGR01351 adk: adenylate kinase
0.00076 17.2 0.1 0.002 15.8 0.1 1.7 1 TIGR00017 cmk: cytidylate kinase
0.0018 16.0 0.2 0.055 11.2 0.0 2.4 2 TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistan
0.002 15.8 0.4 0.098 10.3 0.0 2.3 2 TIGR01360 aden_kin_iso1: adenylate kinase
0.0077 14.0 2.9 0.03 12.1 2.9 2.1 1 TIGR00152 TIGR00152: dephospho-CoA kinase
Domain annotation for each model (and alignments):
>> TIGR02173 cyt_kin_arch: putative cytidylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.3 0.0 1.6e-05 0.0072 1 27 [. 1 27 [. 1 35 [. 0.94
2 ! 13.4 0.4 3.1e-05 0.014 71 168 .. 107 198 .. 86 199 .. 0.74
Alignments for each domain:
== domain 1 score: 14.3 bits; conditional E-value: 1.6e-05
TIGR02173 1 miivisGpPGsGkttvakilaeklslk 27
m+i+i G G+Gk+t++ ++++kl+++
MMSYN1_0330 1 MKIAIFGTVGAGKSTISAEISKKLGYE 27
89***********************98 PP
== domain 2 score: 13.4 bits; conditional E-value: 3.1e-05
TIGR02173 71 keknvvlesrlagWllkeyaDvkiylkaslevraeriakrenksltealkeiiereesekrrykeiygiDlddlsiyDLvintskldvdevdivlkal 168
+nvvle l k D+ iyl+ s ++ +ri kr + + +e e ++ y+e+y ++ d+ +v++++ + +++++ + l
MMSYN1_0330 107 FYNNVVLEN-LKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEY--WET-LNKNYEEFYKQNVYDFPF--FVVDAELDVKTQIELIMNKL 198
456777775.3333445578********************988754444444..344.4588999*****999999..89999988888899998776 PP
>> TIGR00041 DTMP_kinase: dTMP kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.2 0.2 0.00099 0.44 7 45 .. 3 41 .. 1 82 [. 0.76
2 ! 19.9 0.3 2.5e-07 0.00011 128 191 .. 124 189 .. 98 194 .. 0.81
Alignments for each domain:
== domain 1 score: 8.2 bits; conditional E-value: 0.00099
TIGR00041 7 iviEGidGaGKTtqlellkkllkeeglkvlltrEPggtk 45
i+i G GaGK+t+++ + k+l e++k + + P +
MMSYN1_0330 3 IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQ 41
7888999***************99988877777765555 PP
== domain 2 score: 19.9 bits; conditional E-value: 2.5e-07
TIGR00041 128 kPdlvilLdidpevalerlskrgeldreelekldflekvrekyleladke...kkivvvdaenkvee 191
d+vi+L + ++a r++krg ++e l ++ e++ ++y e +++ ++vvdae v+
MMSYN1_0330 124 SFDIVIYLRVSTKTAISRIKKRGR-SEELLIGEEYWETLNKNYEEFYKQNvydFPFFVVDAELDVKT 189
469*********************.666666777889999999999998444467899999988765 PP
>> TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.1 0.0 0.01 4.5 4 25 .. 5 26 .. 3 30 .. 0.91
2 ! 15.0 0.5 9.4e-06 0.0042 98 160 .. 117 181 .. 84 202 .. 0.77
Alignments for each domain:
== domain 1 score: 5.1 bits; conditional E-value: 0.01
TIGR01359 4 vlGgPGsGkGtqCakiveefkf 25
++G G+Gk t+ a+i++++++
MMSYN1_0330 5 IFGTVGAGKSTISAEISKKLGY 26
7899***************998 PP
== domain 2 score: 15.0 bits; conditional E-value: 9.4e-06
TIGR01359 98 klidekvevkfvlfldcseevmvkrllkrgqssGr..vddnieslkkrletykeetlpvieyfek 160
k+ ++k+ +++v++l +s+++ + r++krg+s ++ e+l+k e + ++++ +f
MMSYN1_0330 117 KIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEELliGEEYWETLNKNYEEFYKQNVYDFPFFVV 181
456899***********************997543115788899999999998888766666654 PP
>> TIGR00235 udk: uridine kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.8 3.5 5.4e-07 0.00024 9 204 .. 3 200 .. 1 203 [. 0.66
Alignments for each domain:
== domain 1 score: 18.8 bits; conditional E-value: 5.4e-07
TIGR00235 9 igiaGasgsGkttvaekivellkkekiv.lisqDnyYkdl.sdkelaerkkinfDhPdaldldl.llehlknLkkgka.vdvPv.....Ydyvehtrk 97
i+i G+ g+Gk+t+ ++i+++l+ e + ++++ y++++ +d++ + +k + a ++l + l+n+ +++ ++ P+ Yd + +++
MMSYN1_0330 3 IAIFGTVGAGKSTISAEISKKLGYEIFKePVEENPYFEQYyKDLKKTVFKMQIY-MLTARSKQLkQAKNLENIIFDRTlLEDPIfmkvnYDLNNVDQT 99
89*********************8766524666656655544444433333333.3333333331345666665444315666611213566666678 PP
TIGR00235 98 ketvkvepkkvvileGilllvderlrdlldlkifvdtdldirlirrlerDieerGrsldsvi.kqyrkvvrpmyekfveptkkyaD.liiPeggknev 193
+ ++ + + v+le + + +++l+ +d+ i++ ++ + r i++rGrs + +i + y ++ + +ye+f ++ ++ + ++
MMSYN1_0330 100 DYNTYIDFYNNVVLENLKI-PENKLS--FDIVIYLRVSTKTAISR-----IKKRGRSEELLIgEEYWETLNKNYEEFYKQNVYDFPfFVVDAELDVKT 189
88999**********9865.667776..78888888877766544.....578******998578************987655443145555566677 PP
TIGR00235 194 ainllkakiks 204
i+l+ +k++s
MMSYN1_0330 190 QIELIMNKLNS 200
77777777665 PP
>> TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.5 0.0 3e-06 0.0013 27 81 .. 5 61 .. 2 87 .. 0.78
2 ? -2.1 0.1 1.6 7.4e+02 61 79 .. 163 182 .. 148 197 .. 0.58
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 3e-06
TIGR00150 27 LkGdlGaGKttlvkgllkglGiqgevkSPtft...lveeYneaklklyHlDlYrledk 81
+ G +GaGK t++ + k+lG + +k P + Y++ k++++ + +Y+l +
MMSYN1_0330 5 IFGTVGAGKSTISAEISKKLGYE-IFKEPVEEnpyFEQYYKDLKKTVFKMQIYMLTAR 61
679*******************9.677765321213467888999*********9743 PP
== domain 2 score: -2.1 bits; conditional E-value: 1.6
TIGR00150 61 eeYne.aklklyHlDlYrle 79
++Y+e k ++y + ++ ++
MMSYN1_0330 163 KNYEEfYKQNVYDFPFFVVD 182
44443134456666666665 PP
>> TIGR01351 adk: adenylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.5 0.1 0.00073 0.33 2 25 .. 3 26 .. 2 30 .. 0.89
2 ! 8.2 0.2 0.00094 0.42 49 128 .. 72 146 .. 56 175 .. 0.68
Alignments for each domain:
== domain 1 score: 8.5 bits; conditional E-value: 0.00073
TIGR01351 2 lvllGpPGsGKGTqakrlaeklgl 25
+ ++G G+GK+T+++++++klg+
MMSYN1_0330 3 IAIFGTVGAGKSTISAEISKKLGY 26
6699****************9986 PP
== domain 2 score: 8.2 bits; conditional E-value: 0.00094
TIGR01351 49 keylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRr 128
++++ l++d i +k+ + l++ ++++ + +D + e L+ + e++l++d vi+l+v++++ ++ri++R
MMSYN1_0330 72 ENIIFDRTLLEDPIFMKV-NYDLNNVDQTDYNTYIDFYNNV--VLENLK--IPENKLSFDIVIYLRVSTKTAISRIKKRG 146
555555555555555553.3344444555555555555332..234444..34567899******************995 PP
>> TIGR00017 cmk: cytidylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.8 0.1 4.5e-06 0.002 3 31 .. 1 29 [. 1 31 [. 0.94
Alignments for each domain:
== domain 1 score: 15.8 bits; conditional E-value: 4.5e-06
TIGR00017 3 liiaiDGPsaaGKstvakalaeklgykyl 31
+ iai G +aGKst++ ++++klgy+ +
MMSYN1_0330 1 MKIAIFGTVGAGKSTISAEISKKLGYEIF 29
68************************987 PP
>> TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.2 0.0 0.00012 0.055 2 25 .. 4 27 .. 3 33 .. 0.89
2 ? 2.3 0.0 0.066 29 98 115 .. 128 145 .. 114 149 .. 0.80
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 0.00012
TIGR01313 2 vlmGvaGsGkstiakelakklgak 25
+ G+ G+Gksti++e++kklg +
MMSYN1_0330 4 AIFGTVGAGKSTISAEISKKLGYE 27
589*****************9976 PP
== domain 2 score: 2.3 bits; conditional E-value: 0.066
TIGR01313 98 fiyLeaskevilkRlksR 115
+iyL+ s++++++R+k+R
MMSYN1_0330 128 VIYLRVSTKTAISRIKKR 145
59**************99 PP
>> TIGR01360 aden_kin_iso1: adenylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.6 0.1 0.025 11 6 30 .. 3 27 .. 1 31 [. 0.90
2 ! 10.3 0.0 0.00022 0.098 86 151 .. 104 171 .. 57 180 .. 0.75
Alignments for each domain:
== domain 1 score: 3.6 bits; conditional E-value: 0.025
TIGR01360 6 ifivGGpGsGkGtqcekivekyGft 30
i i G G+Gk t + i +k G+
MMSYN1_0330 3 IAIFGTVGAGKSTISAEISKKLGYE 27
5689*******************95 PP
== domain 2 score: 10.3 bits; conditional E-value: 0.00022
TIGR01360 86 lidGyprevkqGeefekriaeaklvlyldvsedtlvkrllkraetsa..rvddnektikkrletykka 151
id y v + + ++ ++v+yl vs +t + r+ kr+++ ++ +t++k e ++k+
MMSYN1_0330 104 YIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEEllIGEEYWETLNKNYEEFYKQ 171
566666666666666666667799*******************9987546678889999999999986 PP
>> TIGR00152 TIGR00152: dephospho-CoA kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.1 2.9 6.8e-05 0.03 2 145 .. 3 146 .. 2 191 .. 0.71
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 6.8e-05
TIGR00152 2 igltGgigsGKstvakilkdkyklpvidADkiarqvvekgkpayekivkhFgaeilne.dgeldr.kkLgelVFndeeelkkLesllhPlireelkkk 97
i++ G +g GKst++ +++k ++++++ + +e+ + ++k v + +l++ +l++ k+L +++F + Le+ + +++ l++
MMSYN1_0330 3 IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTArSKQLKQaKNLENIIFD----RTLLEDPIFMKVNYDLNNV 96
89********************99998866655555555555555555444444555413466552568888884....5667777777788887777 PP
TIGR00152 98 laqlqkklalvlldvpL.lfen.kleklvdkvivvevskelqlerlmkrd 145
+ ++++ +v L +++ + + +d vi + vs ++ + r++kr
MMSYN1_0330 97 DQTDYNTYIDFYNNVVLeNLKIpENKLSFDIVIYLRVSTKTAISRIKKRG 146
77666663333334443244444455567888888888888888888886 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (205 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 394 (0.0877897); expected 89.8 (0.02)
Passed bias filter: 211 (0.0470143); expected 89.8 (0.02)
Passed Vit filter: 50 (0.0111408); expected 4.5 (0.001)
Passed Fwd filter: 10 (0.00222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 10 [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.21
# Mc/sec: 1401.85
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0330 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0332 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0332.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0332/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0332 [L=275]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (275 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 345 (0.0768717); expected 89.8 (0.02)
Passed bias filter: 63 (0.0140374); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 2078.48
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0332 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0338 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0338.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0338/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0338 [L=239]
Description: lipoprotein, putative 1=Unknown Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-08 30.6 0.1 2.8e-08 30.6 0.1 2.2 2 TIGR04547 Mollicu_LP: MOLPALP family lipoprotein
Domain annotation for each model (and alignments):
>> TIGR04547 Mollicu_LP: MOLPALP family lipoprotein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.6 0.1 6.2e-12 2.8e-08 1 34 [. 1 35 [. 1 49 [. 0.83
2 ? -5.1 7.4 0.39 1.7e+03 101 131 .. 61 92 .. 39 206 .. 0.58
Alignments for each domain:
== domain 1 score: 30.6 bits; conditional E-value: 6.2e-12
TIGR04547 1 MKKlLaiLgalslvasSsltvvACtkkek.edkse 34
MKKlL+iLg++ lva+S + v+AC +k k +d ++
MMSYN1_0338 1 MKKLLTILGSVGLVATSGAFVIACGDKPKmNDAKS 35
****************************9644333 PP
== domain 2 score: -5.1 bits; conditional E-value: 0.39
TIGR04547 101 ellkryFgkdsylkktelddninldgk.kgts 131
e++k+ F k++ l++ +l+d+i+ + k +g++
MMSYN1_0338 61 EIIKSAFVKQNGLNDPKLKDKIEVEVKtNGSG 92
56777777777777777777777777722221 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (239 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 272 (0.0606061); expected 89.8 (0.02)
Passed bias filter: 95 (0.0211676); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1492.24
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0338 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0344 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0344.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0344/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0344 [L=186]
Description: Ppase 4=Probable Metabolic process
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (186 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 164 (0.0365419); expected 89.8 (0.02)
Passed bias filter: 132 (0.0294118); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1335.52
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0344 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0345 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0345.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0345/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0345 [L=296]
Description: ecfS 2=Generic Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (296 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 230 (0.0512478); expected 89.8 (0.02)
Passed bias filter: 77 (0.0171569); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 2237.20
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0345 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0346 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0346.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0346/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0346 [L=231]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.015 13.0 0.4 0.022 12.4 0.4 1.3 1 TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistan
Domain annotation for each model (and alignments):
>> TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.4 0.4 5e-06 0.022 83 156 .. 105 178 .. 75 186 .. 0.88
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 5e-06
TIGR01313 83 rkYRDllReaeaelafiyLeaskevilkRlksRkghfmkadllesqfeaLeeptadekdvvkvdidqkleavee 156
++Y D + e +++f+ L ++ i+ k+ f ++++ f +L + + +++d +v+++++l+++
MMSYN1_0346 105 KNYSDFIVLDEQKFHFVNLLNMTKDIEFHKKTTSQSFESSKIINNDFTNLTKANFEQNDLKQVQNNNDLKQILI 178
79***************9998888888888999999******************************99988654 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (231 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 527 (0.117424); expected 89.8 (0.02)
Passed bias filter: 87 (0.019385); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1745.93
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0346 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0347 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0347.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0347/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0347 [L=220]
Description: cmk: cytidylate kinase 5=Equivalog Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8e-65 216.5 5.6 9.2e-65 216.3 5.6 1.0 1 TIGR00017 cmk: cytidylate kinase
8.7e-09 33.6 7.5 7.5e-05 20.8 2.2 2.5 3 TIGR02173 cyt_kin_arch: putative cytidylate kinase
0.00014 19.6 9.2 0.0018 15.9 8.1 2.7 1 TIGR00235 udk: uridine kinase
0.0011 16.3 0.0 0.0017 15.6 0.0 1.3 1 TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylylt
------ inclusion threshold ------
0.093 10.0 4.1 0.15 9.4 0.1 2.2 2 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
Domain annotation for each model (and alignments):
>> TIGR00017 cmk: cytidylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 216.3 5.6 1e-67 9.2e-65 2 216 .. 3 214 .. 2 215 .. 0.98
Alignments for each domain:
== domain 1 score: 216.3 bits; conditional E-value: 1e-67
TIGR00017 2 kliiaiDGPsaaGKstvakalaeklgykyldsGalYRvlalvalqnkvdlededallelikeldiefikekgevevllngedvseairtqevanlvsk 99
kli+a+DG s++GKs ++k++ae l+y+++d+G +YR++++ l +++dl+++++++ l+ + + ++++++ +++n+ +v++++ + ++ n++ +
MMSYN1_0347 3 KLIVAVDGTSSSGKSVICKKVAEILNYQFVDTGLMYRAFTWYCLFKNIDLKNQNQIISLLDSFNYQIKDDQ----IFVNDINVTNKLISSDILNVINQ 96
689****************************************************************9999....*********************** PP
TIGR00017 100 vaaeqkvReallkkqrklakndglvadGRDigtvvlpnaelKifLdAsveeRAkRRlkdlekkg.nevnleellaeikeRDkvDkkrevapLkkakda 196
+++ ++vR+ ++k q++l+kn+g+++ GRDi+ vvlpna+lKifLd e+RAkRR++++ k+ +++++++ +++ +RDk Dk+r ++pL+ +da
MMSYN1_0347 97 ITVIKQVRDYMVKAQQQLVKNKGYIVVGRDITSVVLPNADLKIFLDCDLEIRAKRRFEQNIKNHiLDKSYKQIYNDLYNRDKTDKSRLIGPLVLVDDA 194
***********************************************************9888879******************************** PP
TIGR00017 197 lyldtselsldevvekilek 216
y+d s+l++++vve+i++k
MMSYN1_0347 195 WYIDNSYLTINQVVEMIVNK 214
*****************987 PP
>> TIGR02173 cyt_kin_arch: putative cytidylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.3 0.0 4.1e-06 0.0037 1 34 [. 4 37 .. 4 63 .. 0.89
2 ? -1.4 0.3 0.56 5e+02 137 165 .. 67 95 .. 49 105 .. 0.64
3 ! 20.8 2.2 8.3e-08 7.5e-05 61 135 .. 107 186 .. 91 216 .. 0.67
Alignments for each domain:
== domain 1 score: 15.3 bits; conditional E-value: 4.1e-06
TIGR02173 1 miivisGpPGsGkttvakilaeklslklisaGki 34
+i+++ G sGk+ + k++ae l+++++ +G +
MMSYN1_0347 4 LIVAVDGTSSSGKSVICKKVAEILNYQFVDTGLM 37
5899*************************99965 PP
== domain 2 score: -1.4 bits; conditional E-value: 0.56
TIGR02173 137 ygiDlddlsiyDLvintskldvdevdivl 165
y+i d++ + D+ + + ++ d +++++
MMSYN1_0347 67 YQIKDDQIFVNDINVTNKLISSDILNVIN 95
55554555555655555555555445554 PP
== domain 3 score: 20.8 bits; conditional E-value: 8.3e-08
TIGR02173 61 iDrkikeiaekeknvvlesrlagWllkeyaDvkiylkaslevraeriakre......nksltealkeiiereesekrryke 135
+ + +++ +++++ +v+ +++ +l aD+ki+l+ +le+ra+r +++ +ks++++ +++ +r++++k r+
MMSYN1_0347 107 MVKAQQQLVKNKGYIVVGRDITSVVL-PNADLKIFLDCDLEIRAKRRFEQNiknhilDKSYKQIYNDLYNRDKTDKSRLIG 186
44566778989999999999999888.79***************9976655222333566777777788888888888764 PP
>> TIGR00235 udk: uridine kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.9 8.1 2e-06 0.0018 6 150 .. 3 159 .. 1 176 [. 0.60
Alignments for each domain:
== domain 1 score: 15.9 bits; conditional E-value: 2e-06
TIGR00235 6 tiiigiaGasgsGkttvaekivellkk..ekivli.sqDnyYkdlsdkelaerkki.......nfDhPd........aldldlllehlknLkkgkavd 85
++i+++ G+s+sGk+ + +k+ e l+ ++l+ ++Y ++ +l+++++i n+ d + ++l+ + + n+ ++ +v
MMSYN1_0347 3 KLIVAVDGTSSSGKSVICKKVAEILNYqfVDTGLMyRAFTWYCLFKNIDLKNQNQIislldsfNYQIKDdqifvndiNVTNKLISSDILNVINQITVI 100
589**********************9833345555144567776666666555543222211144322111111111233455555555666665555 PP
TIGR00235 86 vPvYdyvehtrkketvkvepkkvvil.eGilllvderlrdlldlkifvdtdldirlirrlerDiee 150
v dy+ ++ + v+ k +++ i + +dlkif+d dl+ir rr e++i++
MMSYN1_0347 101 KQVRDYMVKAQQ-Q--LVKNKGYIVVgRDI----TSVVLPNADLKIFLDCDLEIRAKRRFEQNIKN 159
556555543322.2..22222222220222....34567789*******************99984 PP
>> TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.6 0.0 1.9e-06 0.0017 164 192 .. 5 33 .. 2 59 .. 0.89
Alignments for each domain:
== domain 1 score: 15.6 bits; conditional E-value: 1.9e-06
TIGR01526 164 tvailGgestGkstLvrklaeklnttsae 192
+va+ G+ s+Gks++ +k+ae+ln +++
MMSYN1_0347 5 IVAVDGTSSSGKSVICKKVAEILNYQFVD 33
799*********************99975 PP
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.4 0.1 0.00017 0.15 14 40 .. 5 31 .. 2 37 .. 0.87
2 ? 1.4 0.9 0.045 40 155 207 .. 49 102 .. 47 119 .. 0.71
Alignments for each domain:
== domain 1 score: 9.4 bits; conditional E-value: 0.00017
TIGR02770 14 vlalvGesGsGksltalailglldkel 40
++a+ G s sGks+ ++ + ++l+ +
MMSYN1_0347 5 IVAVDGTSSSGKSVICKKVAEILNYQF 31
78999*****************98665 PP
== domain 2 score: 1.4 bits; conditional E-value: 0.045
TIGR02770 155 dlDvvvqaevLklleelrekrglgillithDlgvvael..adevavmekGkiver 207
++D+++q ++++ll++++ + +++ D++v +l d + v+++ ++ +
MMSYN1_0347 49 NIDLKNQNQIISLLDSFNYQIKDDQIFVN-DINVTNKLisSDILNVINQITVIKQ 102
68999999999999999988888888874.8888887622344556666666654 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (220 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 316 (0.07041); expected 89.8 (0.02)
Passed bias filter: 87 (0.019385); expected 89.8 (0.02)
Passed Vit filter: 17 (0.00378788); expected 4.5 (0.001)
Passed Fwd filter: 5 (0.00111408); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 1579.65
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0347 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0348 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0348.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0348/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0348 [L=435]
Description: GTPase_EngA: ribosome-associated GTPase EngA 5=Equivalog Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.3e-167 554.5 12.1 4.9e-167 554.3 12.1 1.0 1 TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
1.7e-58 196.7 22.4 2.3e-33 113.9 12.8 2.1 2 TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
6.6e-49 163.8 13.9 1.3e-24 84.8 4.9 2.1 2 TIGR00231 small_GTP: small GTP-binding protein domain
1.1e-48 164.0 9.6 7.3e-26 88.8 3.9 2.0 2 TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation
5.2e-48 161.7 18.0 1.6e-25 87.9 2.2 2.1 2 TIGR00436 era: GTP-binding protein Era
9.4e-33 111.7 15.8 3.5e-14 50.8 2.1 3.1 3 TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding prote
6.9e-31 105.3 11.2 1.8e-18 64.8 3.7 2.4 2 TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding prote
2.7e-25 87.1 10.4 2.4e-14 50.9 0.3 2.1 2 TIGR00437 feoB: ferrous iron transport protein B
4e-24 83.4 31.4 1.4e-13 48.7 12.4 3.4 3 TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
1.1e-22 78.4 6.2 1.8e-11 41.5 2.2 2.2 2 TIGR03156 GTP_HflX: GTP-binding protein HflX
1.2e-16 58.6 5.4 1.8e-09 35.1 1.1 2.2 2 TIGR02729 Obg_CgtA: Obg family GTPase CgtA
1.4e-10 39.1 11.5 0.0009 16.8 0.8 3.4 3 TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase
1e-07 29.3 2.3 0.00038 17.6 0.1 2.3 2 TIGR00991 3a0901s02IAP34: GTP-binding protein
2.2e-07 29.2 5.6 0.00042 18.5 0.8 3.9 2 TIGR02528 EutP: ethanolamine utilization protein, EutP
8.8e-07 26.3 1.7 0.00016 18.8 0.1 2.8 3 TIGR02034 CysN: sulfate adenylyltransferase, large subunit
2.8e-06 23.7 5.0 2.4e-05 20.7 1.0 2.1 2 TIGR00993 3a0901s04IAP86: chloroplast protein import compone
1.2e-05 22.6 11.1 0.002 15.2 0.0 3.6 4 TIGR00092 TIGR00092: GTP-binding protein YchF
0.00047 16.6 4.7 0.028 10.8 0.2 2.7 3 TIGR00491 aIF-2: translation initiation factor aIF-2
0.00078 15.9 7.5 0.017 11.5 0.1 3.5 4 TIGR00503 prfC: peptide chain release factor 3
0.00089 16.7 0.1 0.47 7.8 0.0 2.4 2 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
0.0015 15.6 3.9 0.91 6.5 0.0 3.4 3 TIGR00750 lao: LAO/AO transport system ATPase
0.0021 15.3 3.1 0.0026 15.0 1.7 1.8 2 TIGR03680 eif2g_arch: translation initiation factor 2, gamma
0.008 13.8 1.5 0.52 7.9 0.0 2.7 3 TIGR03263 guanyl_kin: guanylate kinase
Domain annotation for each model (and alignments):
>> TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 554.3 12.1 2.5e-169 4.9e-167 2 432 .] 5 432 .. 4 432 .. 0.98
Alignments for each domain:
== domain 1 score: 554.3 bits; conditional E-value: 2.5e-169
TIGR03594 2 vvaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDee 99
vvaivG+pNVGKS+LfNr++k++k+iv+++pgvTRDr y++ae+ ++efiliDTgG++ +++ +++ei+ q+++aie+advi+fvvd ++l+++D+
MMSYN1_0348 5 VVAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSSAEWLTREFILIDTGGISLSDQLFSNEIKLQTQIAIEQADVIIFVVDFLNNLDNDDKM 102
8************************************************************************************************* PP
TIGR03594 100 iaklLrkskkpvilvvNKvdnkkeeaeaaefyslGlgevlaiSaehgrgikdLldeileelpeeeeeeeeeeeeepikiaiiGrpNvGKStLvNallg 197
iak+L+kskkpvil+vNK d+k+ + + ++f+slG++++++iS++hg g++dLld++++ ++++ee +++ ++kiaiiGrpNvGKS+LvN+l++
MMSYN1_0348 103 IAKILHKSKKPVILAVNKYDKKTIDDHNYQFMSLGFSDLYFISSTHGIGVGDLLDKVISYISKNEEIIKDD----STKIAIIGRPNVGKSSLVNSLVN 196
*************************************************************9998866666....58********************* PP
TIGR03594 198 eervivsdiaGtTrDsidievevkgkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDategiseqDlkiaglileegkalvivvNK 295
e+r+ivs+i GtT D++di++++++kky++iDTAGir+k+k+ +++ek+s+lr+l+ai++ad+vll++Dat++i++qD++i gli +e+k+++ivvNK
MMSYN1_0348 197 ENRMIVSEIEGTTLDAVDISFSYNKKKYTVIDTAGIRKKSKLGQTIEKYSYLRSLSAISNADIVLLMIDATKPITDQDTNIGGLIYDEKKPVIIVVNK 294
************************************************************************************************** PP
TIGR03594 296 wDlv.kdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikevyeslskristsklnrvleeavekhppplvkgkrlklkYatqvktnpp 392
wDl+ ++e+e+ + ++e+++ +k++++a+i+fiS l++++++k+l+ ++e++++l +i+t ln+vl++a+ +p+p ++g+rlk++Ya qv++ +p
MMSYN1_0348 295 WDLIkNKETEILKKEEEIRAYFKYISYAKIIFISTLDKTRITKILDLVDEIKQNLDIKIKTYVLNEVLNKAQLINPAPEFNGNRLKIYYASQVQAYIP 392
****88888899999*********************************************************************************** PP
TIGR03594 393 tfvlfvnrpeklkesYkrYLenklreefklegvpirlefk 432
tfvlf+n+p++l++sYkr+Len++r +f+l+ +pi+l f+
MMSYN1_0348 393 TFVLFCNNPNYLHFSYKRFLENQIRFSFGLDSIPINLIFR 432
*************************************997 PP
>> TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.1 4.4 7.9e-28 1.5e-25 211 370 .. 5 166 .. 1 173 [. 0.83
2 ! 113.9 12.8 1.2e-35 2.3e-33 206 382 .. 171 357 .. 154 373 .. 0.75
Alignments for each domain:
== domain 1 score: 88.1 bits; conditional E-value: 7.9e-28
TIGR00450 211 klaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGie.kslkaikeadlvlyvlDaskpltkdde 307
+aivGk+NvGKSSL+N ++k+ ++iV + +G tRD + ++ e + l+Dt Gi +++ i+ +++ ai++ad++++v+D ++l++dd+
MMSYN1_0348 5 VVAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSSAEWLTREFILIDTGGISLSDQLF-SNEIKlQTQIAIEQADVIIFVVDFLNNLDNDDK 101
58*******************************************************8776555.4455537889**********************9 PP
TIGR00450 308 liit.lkkkkkdlllvlNKiDLa..eleilkselkltvsllsakqlkikelvdlltekinalyske 370
+i++ l+k+kk+++l +NK D + + + + + + l s l ++ +v +l +k+ ++sk+
MMSYN1_0348 102 MIAKiLHKSKKPVILAVNKYDKKtiDDHNY-QFMSLGFSDLYFISSTHGIGVGDLLDKVISYISKN 166
98763799*************996533333.33667788888888877778888888887777773 PP
== domain 2 score: 113.9 bits; conditional E-value: 1.2e-35
TIGR00450 206 lkdglklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaa...dkvEklGiekslkaikeadlvlyvlDask 300
+d k+ai+G++NvGKSSL+N l++++r iVs+i+Gtt D v+ ++ + + ++DtAGiR++ +++Ek +sl+ai +ad+vl+++Da+k
MMSYN1_0348 171 KDDSTKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSYNKKKYTVIDTAGIRKKSklgQTIEKYSYLRSLSAISNADIVLLMIDATK 268
36789**********************************************************98733368*************************** PP
TIGR00450 301 pltkddeli.itlkkkkkdlllvlNKiDLa...eleilkselklt..vslls.akqlkikelvdlltekinalyskekdeldlalisss 382
p t++d+ i +kk++++v+NK DL+ e+eilk+e + +s ak i l + + ki +l+ ++k++ld+++ +
MMSYN1_0348 269 PITDQDTNIgGLIYDEKKPVIIVVNKWDLIknkETEILKKEEEIRayFKYISyAKIIFISTLDKTRITKILDLVDEIKQNLDIKIKTYV 357
***99955515667899*************88756666555443311233331233344555555566666666666666666665443 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.5 1.6 8e-27 1.6e-24 1 137 [. 1 134 [. 1 160 [. 0.84
2 ! 84.8 4.9 6.8e-27 1.3e-24 4 162 .. 175 342 .. 172 344 .. 0.87
Alignments for each domain:
== domain 1 score: 84.5 bits; conditional E-value: 8e-27
TIGR00231 1 tkeikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrly.vreverslevvdivilvldveegl 97
+k+ ++ivG+++vGKs+L+n+++k+k si+ kpgvtrd + + e ++ l+DT+G d++ + +++ +e +d++i+v+d+ ++l
MMSYN1_0348 1 MKKQVVAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSSAEWLT--REFILIDTGGISLSDQLFSNEiKLQTQIAIEQADVIIFVVDFLNNL 96
67789**************************************9999998..67********8888888777724588889***************** PP
TIGR00231 98 ekqtkeiiheakkkgvpiilvvnKiDlkddlktkvkslfa 137
+++k i++ + k+++p+il+vnK D+k+ ++ + f
MMSYN1_0348 97 DNDDKMIAKILHKSKKPVILAVNKYDKKT-ID-DHNYQFM 134
****************************9.33.3333344 PP
== domain 2 score: 84.8 bits; conditional E-value: 6.8e-27
TIGR00231 4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaG....qedfdairrlyvreverslevvdivilvldveegl 97
ki+i+G+++vGKs+L nsl ++++i++ +g+t d+v ++ ++ +k +++DTaG + + i+++++ ++ + ++ +div+l++d+ ++
MMSYN1_0348 175 TKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSYNK--KKYTVIDTAGirkkSKLGQTIEKYSYLRSLSAISNADIVLLMIDATKPI 270
69*********************************************..569*******7665555678999************************** PP
TIGR00231 98 ekqtkeiiheakkkgvpiilvvnKiDlkd.......dlktkvkslfaklnaepiielsaetgknidklfklv 162
++q+ i +++p+i+vvnK+Dl + + +++ + f+ + ++ii +s+ + ++i+k+ +lv
MMSYN1_0348 271 TDQDTNIGGLIYDEKKPVIIVVNKWDLIKnketeilKKEEEIRAYFKYISYAKIIFISTLDKTRITKILDLV 342
***************************998888544444444555666666778888888888888887776 PP
>> TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.9 0.4 3.9e-25 7.7e-23 7 171 .. 3 167 .. 1 173 [. 0.92
2 ! 88.8 3.9 3.8e-28 7.3e-26 7 165 .. 174 344 .. 168 368 .. 0.75
Alignments for each domain:
== domain 1 score: 78.9 bits; conditional E-value: 3.9e-25
TIGR03918 7 rlhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRve.ktrevlektdlallvvdaeaeleel 103
+ +a++G+ N+GKSsl+N +++++ +iv + pG T D ++ + E l +liDT G+ + +L + ++ +t+ ++e++d++++vvd ++l +
MMSYN1_0348 3 KQVVAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSSAEWLTR-EFILIDTGGISLSDQLFSNEIKlQTQIAIEQADVIIFVVDFLNNLDND 99
5679*****************************************9976.6789********9999888776489999**************999999 PP
TIGR03918 104 eeelleelkekkipvivvlnkidlkeeekekeklekkkeeevvlvsakekegieelkealiellpeea 171
++ +++ l++ k pvi+++nk+d+k+ ++++ + ++ +++ ++s++++ g+ +l +++i+ ++++
MMSYN1_0348 100 DKMIAKILHKSKKPVILAVNKYDKKTIDDHNYQFMSLGFSDLYFISSTHGIGVGDLLDKVISYISKNE 167
9999999*******************99999999999999999***************9999988773 PP
== domain 2 score: 88.8 bits; conditional E-value: 3.8e-28
TIGR03918 7 rlhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRve....ktrevlektdlallvvdaeael 100
++ia++Gr N+GKSsl+N l++++ ivs+++GtT D+v ++ + ++iDTaG+ +++LG++ + ++ ++++++d++ll++da++ +
MMSYN1_0348 174 STKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSYNKK-KYTVIDTAGIRKKSKLGQTIEKysylRSLSAISNADIVLLMIDATKPI 270
579*****************************************98775.7899*************975432233899******************* PP
TIGR03918 101 eeleeelleelkekkipvivvlnkidlkeeeke...keklekkke........eevvlvsakekegieelkealie 165
+++++++ + ++k pvi+v+nk dl +++++ k +e++ + +++++s+ +k+ i+++ + + e
MMSYN1_0348 271 TDQDTNIGGLIYDEKKPVIIVVNKWDLIKNKETeilK--KEEEIRayfkyisyAKIIFISTLDKTRITKILDLVDE 344
***************************9998765431..2222220111111145666666666666555443333 PP
>> TIGR00436 era: GTP-binding protein Era
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 87.9 2.2 8.3e-28 1.6e-25 2 129 .. 5 133 .. 4 173 .. 0.90
2 ! 79.6 8.2 2.8e-25 5.5e-23 2 159 .. 176 342 .. 175 366 .. 0.83
Alignments for each domain:
== domain 1 score: 87.9 bits; conditional E-value: 8.3e-28
TIGR00436 2 fvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknke.del 98
vai+G+pnvGKS L N+++++k siv +k+ Tr ri + +++ i+iDt G++ + + + + ++ + + a+++ d+i+fvvd ++ + d++
MMSYN1_0348 5 VVAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSSAEWLTREFILIDTGGISLSDQLFSNEIKLQTQIAIEQADVIIFVVDFLNNLDNdDKM 102
59****************************************99999*****************************************999998899* PP
TIGR00436 99 lleklqklkapvvlalnkldnkekdklleli 129
+ ++l+k+k+pv+la+nk d+k+ d++ ++
MMSYN1_0348 103 IAKILHKSKKPVILAVNKYDKKTIDDHNYQF 133
**********************888765554 PP
== domain 2 score: 79.6 bits; conditional E-value: 2.8e-25
TIGR00436 2 fvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlhekkhklnellvk....eirkalsevdlilfvvdsdeknke 95
++ai+GrpnvGKS L+N+l++++ ivS++ TT+ ++ + ++++ + iDt G+ + k kl++ + k +a+s+ d++l+++d+++ +
MMSYN1_0348 176 KIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSYNKKKYTVIDTAGIRK-KSKLGQTIEKysylRSLSAISNADIVLLMIDATKPITD 272
79*******************************************************86.567788888732224569****************9999 PP
TIGR00436 96 .dellleklqklkapvvlalnkldnkekdkllelidkeasllefk.....eiveisalkgenveelkaiv 159
d + + + k+pv++++nk d +++++++ l ++e+++ fk +i+ is l ++ + ++ v
MMSYN1_0348 273 qDTNIGGLIYDEKKPVIIVVNKWDLIKNKETEILKKEEEIRAYFKyisyaKIIFISTLDKTRITKILDLV 342
8***********************9977766666677777777776777799*99999988777655433 PP
>> TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.7 0.1 1.3e-14 2.5e-12 120 175 .. 5 63 .. 1 81 [. 0.80
2 ! 50.8 2.1 1.8e-16 3.5e-14 17 173 .. 78 232 .. 68 242 .. 0.84
3 ! 23.7 3.0 3.1e-08 6.1e-06 19 108 .. 254 352 .. 249 367 .. 0.83
Alignments for each domain:
== domain 1 score: 44.7 bits; conditional E-value: 1.3e-14
TIGR03596 120 ralvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwik...lskeleLlDtPGilw 175
+ +vG PNvGKS+l Nr++k+k+ v nkpgvT+ + l +e+ L+Dt Gi +
MMSYN1_0348 5 VVAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSSaewLTREFILIDTGGISL 63
578********************************8765542225679********943 PP
== domain 2 score: 50.8 bits; conditional E-value: 1.8e-16
TIGR03596 17 eklklvDvvievlDARiplssknpeleelvk..nkprlivlnkaDladpektkkwlkyfeekg.kkalavnakkkkkvkkilkaikkllkekkeklka 111
++++Dv+i v+D l +++++++++ +kp ++ +nk D +++ + +f + g ++ ++++++++ +v +l+++ + +++++e
MMSYN1_0348 78 IAIEQADVIIFVVDFLNNLDNDDKMIAKILHksKKPVILAVNKYDKKT---IDDHNYQFMSLGfSDLYFISSTHGIGVGDLLDKVISYISKNEEI--- 169
46789************************9866899999999998644...333344444444147999******************99998888... PP
TIGR03596 112 kglkkkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwikls...keleLlDtPGi 173
+k ++++ ++G PNvGKS+l+N+l++++ + v + g T i+ s k+++++Dt Gi
MMSYN1_0348 170 --IKDDSTKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSynkKKYTVIDTAGI 232
..99**************************************99988886422268999999998 PP
== domain 3 score: 23.7 bits; conditional E-value: 3.1e-08
TIGR03596 19 lklvDvvievlDARiplssknpeleelvk..nkprlivlnkaDladpektk......kwlkyfe.ekgkkalavnakkkkkvkkilkaikkllkekke 107
++++D+v+ ++DA p++ ++ ++ l+ +kp +iv+nk Dl+++++t+ ++ +yf+ + k++++++ +k++++kil++++++ ++ +
MMSYN1_0348 254 ISNADIVLLMIDATKPITDQDTNIGGLIYdeKKPVIIVVNKWDLIKNKETEilkkeeEIRAYFKyISYAKIIFISTLDKTRITKILDLVDEIKQNLDI 351
6889*********************9986558**************998862222225667999778889******************9999887766 PP
TIGR03596 108 k 108
k
MMSYN1_0348 352 K 352
6 PP
>> TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.9 0.8 1.2e-14 2.3e-12 19 148 .. 4 130 .. 1 159 [. 0.86
2 ! 64.8 3.7 9.2e-21 1.8e-18 7 184 .. 163 341 .. 157 343 .. 0.79
Alignments for each domain:
== domain 1 score: 44.9 bits; conditional E-value: 1.2e-14
TIGR03598 19 peiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffev...neelrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDirhe 113
+ +a++G+ NvGKSsl N ++++k + + ++PG T+ + + ++e++l+D G + +++ k+q+ i+ e+ ++++vD+ +
MMSYN1_0348 4 QVVAIVGKPNVGKSSLFNRIIKEK-KSIVDNKPGVTRDRIYSSAewlTREFILIDTGGISLSDQLFSNEIKLQTQIA-----IEQADVIIFVVDFLNN 95
569*******************99.5789********9766665444679*********999999999999888886.....46778899******** PP
TIGR03598 114 lkelDlellellkeakipvlvvltKaDklkkselk 148
l ++D+++ ++l+++k pv++ ++K Dk + + +
MMSYN1_0348 96 LDNDDKMIAKILHKSKKPVILAVNKYDKKTIDDHN 130
****************************8766555 PP
== domain 2 score: 64.8 bits; conditional E-value: 9.2e-21
TIGR03598 7 aaklkqlpedklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTql...inffevne.elrlvDlPGYGyakvskeekekwqklieeY.....L 95
++k +++++d+ ++ia++Gr NvGKSsl+N+L+n++++ +S+ G T i f+ n+ +++++D G ++k+k+ ++ie+Y L
MMSYN1_0348 163 ISKNEEIIKDDSTKIAIIGRPNVGKSSLVNSLVNENRM-IVSEIEGTTLDavdIS-FSYNKkKYTVIDTAGI-------RKKSKLGQTIEKYsylrsL 251
56788999**************************9965.799*****96521144.55555388999*9874.......4556666666654332224 PP
TIGR03598 96 ekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselk..kalkkvkkelkkeeekvevllfSslkkegieelkae 184
+ +n v+l++D+ ++++++D+++ l+ ++k pv++v++K D +k++e++ k+ +++++ +k ++++++++S+l+k+ i+++ +
MMSYN1_0348 252 SAISNADIVLLMIDATKPITDQDTNIGGLIYDEKKPVIIVVNKWDLIKNKETEilKKEEEIRAYFKYI-SYAKIIFISTLDKTRITKILDL 341
55566678999**********************************88766554228888899988888.567************9998765 PP
>> TIGR00437 feoB: ferrous iron transport protein B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 50.9 0.3 1.3e-16 2.4e-14 1 151 [. 10 160 .. 10 178 .. 0.77
2 ! 40.0 4.4 2.5e-13 4.8e-11 1 182 [. 181 374 .. 181 391 .. 0.77
Alignments for each domain:
== domain 1 score: 50.9 bits; conditional E-value: 1.3e-16
TIGR00437 1 GnpNvGKstlfnaLtgsn.qkvgNwpGvTVekkegklelkgedieivDlPGiYsLttvs.ldEkvardyllnekadLvvnvvda.snleRnLyltlQl 95
G+pNvGKs+lfn++ +++ v N pGvT ++ + e +++ ++D+ Gi sL++ +E+ + ++ e+ad+++ vvd +nl+ + + + +
MMSYN1_0348 10 GKPNVGKSSLFNRIIKEKkSIVDNKPGVTRDRIYSSAEWLTREFILIDTGGI-SLSDQLfSNEIKLQTQIAIEQADVIIFVVDFlNNLDNDDKMIAKI 106
89***********9876515789****************************9.5655442678888999**************7368**999999998 PP
TIGR00437 96 le.lgiplilalNlvdeAekkgirideekLe.erLGvp.vvplsatkgrgieelkkaid 151
l +p+ila+N+ d +id+++ + LG ++ +s+t+g g+ +l +++
MMSYN1_0348 107 LHkSKKPVILAVNKYDKK-----TIDDHNYQfMSLGFSdLYFISSTHGIGVGDLLDKVI 160
7626789********953.....455555542457764366777777777777777665 PP
== domain 2 score: 40.0 bits; conditional E-value: 2.5e-13
TIGR00437 1 GnpNvGKstlfnaLtgsn.qkvgNwpGvTVekkegklelkgedieivDlPGiYsLttvs..ldEkva..rdyllnekadLvvnvvdasn..leRnLyl 91
G pNvGKs+l+n L ++n + v+ G+T + ++++ ++ +++D+ Gi ++ + Ek + r + +ad+v+ ++da++ + + +
MMSYN1_0348 181 GRPNVGKSSLVNSLVNENrMIVSEIEGTTLDAVDISFSYNKKKYTVIDTAGIRKKSKLGqtI-EKYSylRSLSAISNADIVLLMIDATKpiTDQDTNI 277
89************998736789*****************************9877665213.333311444455899*********97546889999 PP
TIGR00437 92 tlQllelgiplilalNlvdeAekkgirideekLe..erL....Gvpvvplsatkgrgieelkkaideekaiklvekkkraieilkeaeslaevkekl 182
+ + +p+i+++N++d+ ++k +i +++ e + +++ +s ++ i ++ + +de k++ ++ k+++++++ + +l + +++
MMSYN1_0348 278 GGLIYDEKKPVIIVVNKWDLIKNKETEILKKEEEirAYFkyisYAKIIFISTLDKTRITKILDLVDEIKQNLDIKIKTYVLNEVLNKAQLINPAPEF 374
999*********************9999655433112221111457888999999999999999999999999999999988887777776666554 PP
>> TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.4 0.1 1e-09 2e-07 155 223 .. 3 69 .. 1 80 [. 0.79
2 ! 48.7 12.4 7.3e-16 1.4e-13 54 227 .. 72 244 .. 63 250 .. 0.74
3 ! 15.2 8.2 1.1e-05 0.0021 50 157 .. 243 350 .. 240 387 .. 0.71
Alignments for each domain:
== domain 1 score: 28.4 bits; conditional E-value: 1e-09
TIGR03597 155 kkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieip...ldkesvllDtpGiineeqian 223
k+ v +vG+ NVGKSsl N+++k++k + pg T d i l +e +l+Dt Gi ++q+++
MMSYN1_0348 3 KQVVAIVGKPNVGKSSLFNRIIKEKKSIV-----DNKPGVTRDRIYSSaewLTREFILIDTGGISLSDQLFS 69
67789*****************7766444.....477999999776542226899*********99998765 PP
== domain 2 score: 48.7 bits; conditional E-value: 7.3e-16
TIGR03597 54 flnllnslsekkalvvavvDifdlegslikelkrfv..kenkvllvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkgl....kel 145
++ + + e+ +++ vvD ++ + k++++++ ++++v+l vNK d +k + + ++ + g++ d ++s++++ g+ +++
MMSYN1_0348 72 IKLQTQIAIEQADVIIFVVDFLNNLDNDDKMIAKILhkSKKPVILAVNKYD--------KKTIDDHNYQFMSLGFS--DLYFISSTHGIGVgdllDKV 159
44444445568899******9877777777777776215789*******99........23334446678888888..99999999988762222667 PP
TIGR03597 146 lelikkare.....kkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipl...dkesvllDtpGiineeqianllsk 227
+++i+k++e ++ ++G NVGKSsl+N+l+++n+ + +S++ gTTld ++i + +k+ +++Dt+Gi +++++ ++++k
MMSYN1_0348 160 ISYISKNEEiikddSTKIAIIGRPNVGKSSLVNSLVNENR-----MIVSEIEGTTLDAVDISFsynKKKYTVIDTAGIRKKSKLGQTIEK 244
7778887765411234678*****************7776.....679**************954446679*********9999888776 PP
== domain 3 score: 15.2 bits; conditional E-value: 1.1e-05
TIGR03597 50 kdedflnllnslsekkalvvavvD....ifdlegslikelkrfvkenkvllvvNKidll.pksvklekikewlkkeakeeglkpvdillvsakkkkgl 142
++ ++l+ l+ +s+ + +v+ ++D i d + + i +l + ++++v++vvNK dl+ +k+++ k +e ++ ++k + +i+++s+ k+ +
MMSYN1_0348 243 EKYSYLRSLSAISNAD-IVLLMIDatkpITDQD-TNIGGLI-YDEKKPVIIVVNKWDLIkNKETEILKKEEEIRAYFKYISYA--KIIFISTLDKTRI 335
5556666666666544.4556677666666654.4444433.34689***********9345667788889999999988877..************* PP
TIGR03597 143 kellelikkarekkd 157
+++l+l+++ +++ d
MMSYN1_0348 336 TKILDLVDEIKQNLD 350
**9999887776433 PP
>> TIGR03156 GTP_HflX: GTP-binding protein HflX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.9 0.1 5.7e-13 1.1e-10 190 348 .. 4 160 .. 1 163 [. 0.82
2 ! 41.5 2.2 9.5e-14 1.8e-11 186 348 .. 171 343 .. 164 366 .. 0.78
Alignments for each domain:
== domain 1 score: 38.9 bits; conditional E-value: 5.7e-13
TIGR03156 190 ptvalvGYTNaGKstllnaltk.aevlaedklFATLdpttrrlklpeeeevlltDTVGFirkLPheLvea.Fk.aTLeevaeadlllhvvDasdeeae 284
+va+vG N GKs+l+n+++k ++ ++++k T d ++ + +e++l DT G +L ++L + k T +++ad+++ vvD ++ +
MMSYN1_0348 4 QVVAIVGKPNVGKSSLFNRIIKeKKSIVDNKPGVTRDRIYSSAEWLT-REFILIDTGGI--SLSDQLFSNeIKlQTQIAIEQADVIIFVVDFLNN-LD 97
579****************998357899999*******999999966.599*****985..68888875424425777889**********9865.55 PP
TIGR03156 285 eqieaveevLeelgaeeipvllvlNkidkle..eeeleeleekkeeavlvsAkkgegleeLleaie 348
+ + ++++L+ +++pv+l++Nk dk + +++++ + ++ ++s+++g g+ +Ll+++
MMSYN1_0348 98 NDDKMIAKILH---KSKKPVILAVNKYDKKTidDHNYQFMSLGFSDLYFISSTHGIGVGDLLDKVI 160
56677777776...5789**********988657777888888899************99998875 PP
== domain 2 score: 41.5 bits; conditional E-value: 9.5e-14
TIGR03156 186 ksevptvalvGYTNaGKstllnaltka.evlaedklFATLdpttrrlklpeeeevlltDTVGFir..kLPheLve.aFkaTLeevaeadlllhvvDas 279
k++ ++a++G N GKs+l+n+l+++ ++++ + +TLd+ ++++++ ++++ DT G + kL +++ + ++ L +++ad++l ++Da+
MMSYN1_0348 171 KDDSTKIAIIGRPNVGKSSLVNSLVNEnRMIVSEIEGTTLDAVDISFSYNKK-KYTVIDTAGIRKksKLGQTIEKySYLRSLSAISNADIVLLMIDAT 267
567899*******************97255667777899***9999998765.88999****7652258777754478899***************** PP
TIGR03156 280 deeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleekk...........eeavlvsAkkgegleeLleaie 348
++ +++ ++ + e++pv++v+Nk+d+++++e+e l++++ ++ +++s+ +++ ++++l+ ++
MMSYN1_0348 268 KPITDQDTNIGGL----IYDEKKPVIIVVNKWDLIKNKETEILKKEEeirayfkyisyAKIIFISTLDKTRITKILDLVD 343
9988776554433....455789*************77777766665334444444334477888888888777776665 PP
>> TIGR02729 Obg_CgtA: Obg family GTPase CgtA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.6 0.2 7e-09 1.4e-06 160 328 .. 6 163 .. 4 164 .. 0.82
2 ! 35.1 1.1 9e-12 1.8e-09 159 325 .. 176 343 .. 174 347 .. 0.77
Alignments for each domain:
== domain 1 score: 25.6 bits; conditional E-value: 7e-09
TIGR02729 160 vglvGlpnaGkStllsavsaakpkiadYp.FtTlvPnLGvveveeeksfvlaDiPgl.iegasegagLGleFLkHiertrvllhlidlseedekdpve 255
v++vG pn+GkS+l++++ + k i d + T e + ++f+l D g+ +++ + + l+ ie++ v+++++d+ ++ +
MMSYN1_0348 6 VAIVGKPNVGKSSLFNRIIKEKKSIVDNKpGVTRDRIYSSAEWLT-REFILIDTGGIsLSDQLFSNEIKLQTQIAIEQADVIIFVVDFLNN----LDN 98
89***************9998888877650556665566666666.**********9667777888999999999*************987....667 PP
TIGR02729 256 dleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeelekkvlaisaltkegleellkkllell 328
d ++i k L+k ++kp ++++nk d + +++ ++ + +++++is++++ g+ +ll+k+++++
MMSYN1_0348 99 DDKMIAKILHK-----SKKPVILAVNKYDKKT---IDDHNYQFMSLGFSDLYFISSTHGIGVGDLLDKVISYI 163
88899999987.....468**********966...5555556665556899****************998765 PP
== domain 2 score: 35.1 bits; conditional E-value: 9e-12
TIGR02729 159 dvglvGlpnaGkStllsavsa.akpkiadYpFtTlvPnLGvveveeeksfvlaDiPgliegasegagLGl.eFLk...Hiertrvllhlidlseedek 251
++++G pn+GkS+l++++ + + +++ + tTl ++++ k++++ D g+ + + g+ + + ++L+ i+++ ++l +id+++
MMSYN1_0348 176 KIAIIGRPNVGKSSLVNSLVNeNRMIVSEIEGTTLDAVDISFSYNK-KKYTVIDTAGIRKKSKLGQTIEKySYLRslsAISNADIVLLMIDATK---- 268
589*************987651667789999999986555555555.99******************974367762225778899999999877.... PP
TIGR02729 252 dpvedleviekeLkkyseeLaekpelvvlnkidlleeeele..ellkelkeel....ekkvlaisaltkegleellkkll 325
p++d ++ L y+e +kp ++v+nk dl++++e+e ++ +e+++ + k+++is+l+k+ ++++l+ +
MMSYN1_0348 269 -PITDQDTNIGGLI-YDE---KKPVIIVVNKWDLIKNKETEilKKEEEIRAYFkyisYAKIIFISTLDKTRITKILDLVD 343
.5788888777774.887...8************9986655115555666665666678999*******99999988665 PP
>> TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.0 2.1e-05 0.0041 121 185 .. 2 63 .. 1 86 [. 0.82
2 ! 16.8 0.8 4.6e-06 0.0009 122 185 .. 175 234 .. 100 244 .. 0.74
3 ! 12.9 2.6 7.2e-05 0.014 33 119 .. 244 341 .. 211 369 .. 0.77
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 2.1e-05
TIGR00157 121 kkrisvfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhlqgGliiDtPGfne 185
kk++ ++G+ VGKSSL N++ e k v+ +k + ++ s+ + ++ ++iDt G++
MMSYN1_0348 2 KKQVVAIVGKPNVGKSSLFNRIIKEKKSIVD---NKPGVTRDRIYSSAEWLTREFILIDTGGISL 63
66778899****************9999998...7778888888888888888888888888875 PP
== domain 2 score: 16.8 bits; conditional E-value: 4.6e-06
TIGR00157 122 krisvfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhlqgGliiDtPGfne 185
+i ++G+ VGKSSL+N l+ e + v+e+ +++ + + +++ + ++iDt G+++
MMSYN1_0348 175 TKI-AIIGRPNVGKSSLVNSLVNENRMIVSEIEGTT---LDAVDISFSYNKKKYTVIDTAGIRK 234
233.368****************9999998776554...5667778888889999999999986 PP
== domain 3 score: 12.9 bits; conditional E-value: 7.2e-05
TIGR00157 33 R.......pivaNvdqivlvsslvePelslalldrlLvvaeakniepiivlnkkdlleeedae.....keqleelknlgY.kvllvsvkneegleelk 117
+ + ++N+d ++l+ +++P ++ L++ e+k + iiv+nk dl++++++e +e +k + Y k++++s+ ++ ++++
MMSYN1_0348 244 KysylrslSAISNADIVLLMIDATKPITDQDTNIGGLIYDEKKPV--IIVVNKWDLIKNKETEilkkeEEIRAYFKYISYaKIIFISTLDKTRITKIL 339
14444456789******************9999999***999986..99************9998664444555678888558899999988887776 PP
TIGR00157 118 ek 119
+
MMSYN1_0348 340 DL 341
54 PP
>> TIGR00991 3a0901s02IAP34: GTP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.4 0.3 0.00015 0.03 41 145 .. 6 108 .. 2 119 .. 0.75
2 ! 17.6 0.1 2e-06 0.00038 37 97 .. 173 233 .. 156 255 .. 0.89
Alignments for each domain:
== domain 1 score: 11.4 bits; conditional E-value: 0.00015
TIGR00991 41 ilvmgkggvgksstvnsiigervaavsafqseglrpvlvsrt.ragftlniidtpglieggyindqavniikrflldktidvllyvdrldayrvddld 137
+ ++gk vgkss n ii e+ + v + + r ++s + + +idt g+ + + +++ ++ ++++ +++ vd l+ +d+ d
MMSYN1_0348 6 VAIVGKPNVGKSSLFNRIIKEKKSIVDN-KPGVTRDRIYSSAeWLTREFILIDTGGISLSDQLFSNEIKLQTQIAIEQADVIIFVVDFLN--NLDNDD 100
6789******************877765.45556666666541445566789**999999888888899888888887655555567776..578888 PP
TIGR00991 138 kqvvkait 145
k+++k +
MMSYN1_0348 101 KMIAKILH 108
88877665 PP
== domain 2 score: 17.6 bits; conditional E-value: 2e-06
TIGR00991 37 ssltilvmgkggvgksstvnsiigervaavsafqseglrpvlvsrtragftlniidtpgli 97
+s i ++g+ vgkss vns++ e+ + vs ++ l v +s + +idt g+
MMSYN1_0348 173 DSTKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSYNKKKYTVIDTAGIR 233
4667999************************************9999999999****9975 PP
>> TIGR02528 EutP: ethanolamine utilization protein, EutP
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.2 0.3 0.0033 0.64 4 138 .. 7 157 .. 3 161 .. 0.55
2 ! 18.5 0.8 2.2e-06 0.00042 2 139 .. 176 341 .. 175 344 .. 0.65
Alignments for each domain:
== domain 1 score: 8.2 bits; conditional E-value: 0.0033
TIGR02528 4 mliGsvgcGkttLtqaLkgee..ikykk...t.....qaveykd...kaiDtPGeylenrryYsaLl....vtaadadvivlvqsatde...esllsp 81
+++G+ + Gk +L++++ e+ i k t e+ iDt G l ++ + + + ++ +advi++v + ++ +++ +
MMSYN1_0348 7 AIVGKPNVGKSSLFNRIIKEKksIVDNKpgvTrdriySSAEWLTrefILIDTGGISLSDQLFSNEIKlqtqIAIEQADVIIFVVDFLNNldnDDKMIA 104
56666666666666665433211222221221111113345544222357888887777766654421111345689999999877655000555555 PP
TIGR02528 82 gfasifakeviglvtkidlaeadkeierakelLeeagaekiFeissvdekgleelvd 138
+++ k+vi v k d +k i+ + + g ++++ iss+ g+ +l+d
MMSYN1_0348 105 KILHKSKKPVILAVNKYD----KKTIDDHNYQFMSLGFSDLYFISSTHGIGVGDLLD 157
555556666666666665....55677666667777777888888888888888776 PP
== domain 2 score: 18.5 bits; conditional E-value: 2.2e-06
TIGR02528 2 rimliGsvgcGkttLtqaLkge......eikykktqave....ykd...kaiDtPG........eylenrryYsaLlvtaadadvivlvqsatdeesl 78
+i++iG+ + Gk +L+++L +e ei+ av+ y++ ++iDt G +e+ y ++L + ++ad++ l+ +at++ +
MMSYN1_0348 176 KIAIIGRPNVGKSSLVNSLVNEnrmivsEIEGTTLDAVDisfsYNKkkyTVIDTAGirkksklgQTIEKYSYLRSL-SAISNADIVLLMIDATKPITD 272
899****************99733222235555667886333355533458***9733332221445555555555.56679********99987665 PP
TIGR02528 79 lsp...gfasifakeviglvtkidlaead.keierakelLeeaga....ekiFeissvdekgleelvdy 139
+ g+ k+vi +v k dl +++ +ei + +e+++ ++ ki is++d++ + +++d
MMSYN1_0348 273 QDTnigGLIYDEKKPVIIVVNKWDLIKNKeTEILKKEEEIRAYFKyisyAKIIFISTLDKTRITKILDL 341
55500144445567***********97641567777777766553222267888999999999999876 PP
>> TIGR02034 CysN: sulfate adenylyltransferase, large subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.1 0.0 0.91 1.8e+02 8 31 .. 11 34 .. 7 46 .. 0.84
2 ! 5.6 0.1 0.0085 1.7 65 160 .. 36 138 .. 31 148 .. 0.70
3 ! 18.8 0.1 8.1e-07 0.00016 64 175 .. 206 327 .. 147 337 .. 0.76
Alignments for each domain:
== domain 1 score: -1.1 bits; conditional E-value: 0.91
TIGR02034 8 svddGkstliGrllhdtkqiledq 31
+ Gks l r++ + k+i++++
MMSYN1_0348 11 KPNVGKSSLFNRIIKEKKSIVDNK 34
5567****************9875 PP
== domain 2 score: 5.6 bits; conditional E-value: 0.0085
TIGR02034 65 gitidvayryfstdkrkfivadtPG...heqytrn.....matgastadlavllvdarkGvleqtrrhsiiasll..Gikhvvlavnkidlvdydeev 152
g+t d y + r+fi+ dt G +q n + ++ ad+ + +vd + + + + +ia +l k v+lavnk d + d++
MMSYN1_0348 36 GVTRDRIYSSAEWLTREFILIDTGGislSDQLFSNeiklqTQIAIEQADVIIFVVDFLNNLDNDDK---MIAKILhkSKKPVILAVNKYDKKTIDDHN 130
666666666666678999999999844435666662221123466789999999999888887765...555555224688*********99999988 PP
TIGR02034 153 feeikkdy 160
++ ++ +
MMSYN1_0348 131 YQFMSLGF 138
87766665 PP
== domain 3 score: 18.8 bits; conditional E-value: 8.1e-07
TIGR02034 64 qgitidvayryfstdkrkfivadtPG..........heq..ytrnmatgastadlavllvdarkGvleqtrrhsiiasll..Gikhvvlavnkidlvd 147
g t+d fs +k+k+ v dt G e+ y r ++s ad+++l++da k +++q + i l+ k v++ vnk dl++
MMSYN1_0348 206 EGTTLDAVDISFSYNKKKYTVIDTAGirkksklgqtIEKysYLRS-LSAISNADIVLLMIDATKPITDQD---TNIGGLIydEKKPVIIVVNKWDLIK 299
478999999999999********9993332222222133113444.4689****************9986...4577776324688************ PP
TIGR02034 148 ydeevfeeikkdylalaeklgvsdvtvi 175
+e+ + +++ +a+ + ++ +++ +i
MMSYN1_0348 300 NKETEILKKEEEIRAYFKYISYAKIIFI 327
*999998889999999888888888776 PP
>> TIGR00993 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 4.8 0.2 0.008 1.6 121 179 .. 6 64 .. 3 114 .. 0.66
2 ! 20.7 1.0 1.2e-07 2.4e-05 118 207 .. 174 262 .. 156 276 .. 0.83
Alignments for each domain:
== domain 1 score: 4.8 bits; conditional E-value: 0.008
TIGR00993 121 ilvlGkaGvGksatinsilgevkasidafglattsvreieGlvdGvkirvidtpGlkss 179
+ ++Gk vGks+ n i+ e+k +d t+ + + +idt G+ s
MMSYN1_0348 6 VAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSSAEWLTREFILIDTGGISLS 64
5689******************9999875433332222223333445666777776443 PP
== domain 2 score: 20.7 bits; conditional E-value: 1.2e-07
TIGR00993 118 slnilvlGkaGvGksatinsilgevkasidafglattsvreieGlvdGvkirvidtpGlks.saldqsknekvlssvkklikksppdivly 207
s +i ++G+ vGks+ +ns+++e+++ ++ + +t +i+ + k +vidt G++ s l q+ ++ s ++ l s divl
MMSYN1_0348 174 STKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSYNKKKYTVIDTAGIRKkSKLGQTIEK--YSYLRSLSAISNADIVLL 262
8899******************************************************9651666666544..456666666677788764 PP
>> TIGR00092 TIGR00092: GTP-binding protein YchF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.2 0.0 1e-05 0.002 6 37 .. 7 38 .. 3 44 .. 0.87
2 ? -2.3 0.1 2.3 4.5e+02 187 215 .. 99 127 .. 71 136 .. 0.64
3 ! 8.4 0.0 0.0012 0.24 4 26 .. 176 198 .. 174 214 .. 0.87
4 ? 2.8 2.6 0.062 12 196 276 .. 282 363 .. 225 370 .. 0.66
Alignments for each domain:
== domain 1 score: 15.2 bits; conditional E-value: 1e-05
TIGR00092 6 GivGLpnvGkstlfqaitkaklgeaanyPfat 37
ivG pnvGks lf+ i+k k + + n P t
MMSYN1_0348 7 AIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVT 38
69*****************9998888877666 PP
== domain 2 score: -2.3 bits; conditional E-value: 2.3
TIGR00092 187 elkiikslnlLtakPilivanvseddlvn 215
+ k+i ++ kP+++++n ++ ++
MMSYN1_0348 99 DDKMIAKILHKSKKPVILAVNKYDKKTID 127
44555555555666666666655554444 PP
== domain 3 score: 8.4 bits; conditional E-value: 0.0012
TIGR00092 4 kaGivGLpnvGkstlfqaitkak 26
k i+G pnvGks l +++++ +
MMSYN1_0348 176 KIAIIGRPNVGKSSLVNSLVNEN 198
5679***************9875 PP
== domain 4 score: 2.8 bits; conditional E-value: 0.062
TIGR00092 196 lLtakPilivanvseddlvnkenkllekvkeiva...efkegdkvvlvsaeleselselke.eereeflkelgleevsglnrvir 276
+ kP++iv+n + dl+++++ +++k+ e + ++ +k++ +s+ +++++ + ++ + + + +++++ ln+v++
MMSYN1_0348 282 YDEKKPVIIVVN--KWDLIKNKETEILKKEEEIRayfKYISYAKIIFISTLDKTRITKILDlVDEIKQNLDIKIKTY-VLNEVLN 363
556799999976..678887777666665555441224556789999998877777765330222233333445555.6666665 PP
>> TIGR00491 aIF-2: translation initiation factor aIF-2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 0.0 0.93 1.8e+02 4 34 .. 3 35 .. 1 45 [. 0.72
2 ! 10.8 0.2 0.00014 0.028 92 133 .. 82 123 .. 52 134 .. 0.85
3 ! 7.1 0.2 0.0019 0.37 91 137 .. 255 301 .. 239 345 .. 0.81
Alignments for each domain:
== domain 1 score: -1.8 bits; conditional E-value: 0.93
TIGR00491 4 sPivavlGhvdhGkttlldkirktr..vakrea 34
+ +va++G + Gk++l+++i k + ++ +
MMSYN1_0348 3 KQVVAIVGKPNVGKSSLFNRIIKEKksIVDNKP 35
6799****************9765411444444 PP
== domain 2 score: 10.8 bits; conditional E-value: 0.00014
TIGR00491 92 ladiailvvdineGfkpqtveavnilrqlktPfvvaankidr 133
ad+ i+vvd + + + + +il++ k P ++a nk d+
MMSYN1_0348 82 QADVIIFVVDFLNNLDNDDKMIAKILHKSKKPVILAVNKYDK 123
48*************************************997 PP
== domain 3 score: 7.1 bits; conditional E-value: 0.0019
TIGR00491 91 aladiailvvdineGfkpqtveavnilrqlktPfvvaankidripGw 137
+ adi +l++d + q ++ ++ k P ++ nk d+i+
MMSYN1_0348 255 SNADIVLLMIDATKPITDQDTNIGGLIYDEKKPVIIVVNKWDLIKNK 301
569*****************999999******************754 PP
>> TIGR00503 prfC: peptide chain release factor 3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.7 0.0 1.7 3.4e+02 11 37 .. 3 29 .. 2 63 .. 0.79
2 ? 3.0 0.1 0.033 6.3 97 181 .. 76 160 .. 53 179 .. 0.73
3 ! 11.5 0.1 8.8e-05 0.017 58 156 .. 200 309 .. 184 323 .. 0.76
4 ? 3.9 0.3 0.018 3.5 136 165 .. 324 354 .. 317 369 .. 0.79
Alignments for each domain:
== domain 1 score: -2.7 bits; conditional E-value: 1.7
TIGR00503 11 rrtfaiishpdaGkttltekvllyGna 37
++ ai+ +p+ Gk++l ++++ ++
MMSYN1_0348 3 KQVVAIVGKPNVGKSSLFNRIIKEKKS 29
67789*********9999988765555 PP
== domain 2 score: 3.0 bits; conditional E-value: 0.033
TIGR00503 97 tyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplelldevenelkintaaitypiGtGklfkGvy 181
t ++ +d ++v+d +++ + + ++ + p++ +nk d+++ d + ++ + t+ iG+G+l+ v
MMSYN1_0348 76 TQIAIEQADVIIFVVDFLNNLDNDDKMIAKILHKSKKPVILAVNKYDKKTIDDHNYQFMSLGFSDLYFISSTHGIGVGDLLDKVI 160
44556678999999********9999999999999************99888655443333344445555666666666666555 PP
== domain 3 score: 11.5 bits; conditional E-value: 8.8e-05
TIGR00503 58 memekqrGisittsvlqfdyrdklvnlldtpGhedfse.....dty...rtlta...vdsalmvidaakGveertrkllevtrlrdlpiltflnkldr 144
m + + G ++ + + f y+ k ++dt G + s+ + y r+l+a +d +l++ida+k + ++ + + + p++ +nk d
MMSYN1_0348 200 MIVSEIEGTTLDAVDISFSYNKKKYTVIDTAGIRKKSKlgqtiEKYsylRSLSAisnADIVLLMIDATKPITDQDTNIGGLIYDEKKPVIIVVNKWDL 297
5555666777777788999999999999999987766433222223235788872225777999*********************************9 PP
TIGR00503 145 dirdplelldev 156
+ e+l +
MMSYN1_0348 298 IKNKETEILKKE 309
888888888653 PP
== domain 4 score: 3.9 bits; conditional E-value: 0.018
TIGR00503 136 ltflnkldrd.irdplelldevenelkinta 165
+ f+ ld+ i + l+l+de++++l+i++
MMSYN1_0348 324 IIFISTLDKTrITKILDLVDEIKQNLDIKIK 354
679*****97255678********9977643 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 6.5 0.0 0.0063 1.2 25 49 .. 2 26 .. 1 36 [. 0.87
2 ! 7.8 0.0 0.0024 0.47 26 57 .. 174 205 .. 160 225 .. 0.79
Alignments for each domain:
== domain 1 score: 6.5 bits; conditional E-value: 0.0063
TIGR03410 25 kgevvavlGrngvGkttllkalvgl 49
k++vva++G+ vGk++l+ ++
MMSYN1_0348 2 KKQVVAIVGKPNVGKSSLFNRIIKE 26
5789***************998865 PP
== domain 2 score: 7.8 bits; conditional E-value: 0.0024
TIGR03410 26 gevvavlGrngvGkttllkalvgllkvksGei 57
+ +a++Gr vGk++l+ +lv ++ ei
MMSYN1_0348 174 STKIAIIGRPNVGKSSLVNSLVNENRMIVSEI 205
55689****************99887766655 PP
>> TIGR00750 lao: LAO/AO transport system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 6.5 0.0 0.0046 0.91 35 57 .. 4 26 .. 2 31 .. 0.90
2 ! 5.7 0.0 0.0085 1.7 35 59 .. 175 199 .. 145 214 .. 0.88
3 ? 2.1 0.9 0.1 20 176 240 .. 289 349 .. 281 365 .. 0.78
Alignments for each domain:
== domain 1 score: 6.5 bits; conditional E-value: 0.0046
TIGR00750 35 hvvGltGvPGaGkstlvekliee 57
+vv + G P +Gks l +++i+e
MMSYN1_0348 4 QVVAIVGKPNVGKSSLFNRIIKE 26
89******************987 PP
== domain 2 score: 5.7 bits; conditional E-value: 0.0085
TIGR00750 35 hvvGltGvPGaGkstlveklieelr 59
+ + G P +Gks lv+ l++e r
MMSYN1_0348 175 TKIAIIGRPNVGKSSLVNSLVNENR 199
57899**************998765 PP
== domain 3 score: 2.1 bits; conditional E-value: 0.1
TIGR00750 176 ivvvnkaDkeeaekerlarlelsldleelferekgWrPkvlktsavegrGikelvdaieehkkvl 240
i+vvnk D +++++ ++++e ++ + + ++ + k++ +s++ + i ++ d ++e k+ l
MMSYN1_0348 289 IIVVNKWDLIKNKETEILKKEEEI--RA-YFKYISY-AKIIFISTLDKTRITKILDLVDEIKQNL 349
89*******999988887765433..33.3444544.5899999999999999998888887765 PP
>> TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 0.0 1.3 2.6e+02 6 35 .. 175 204 .. 171 237 .. 0.80
2 ! 15.0 1.7 1.3e-05 0.0026 104 196 .. 256 345 .. 245 363 .. 0.76
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 1.3
TIGR03680 6 vniglvGhvDhGkttlvkaltGvwtdthse 35
++i+++G + Gk++lv++l + se
MMSYN1_0348 175 TKIAIIGRPNVGKSSLVNSLVNENRMIVSE 204
689999***********9998776665555 PP
== domain 2 score: 15.0 bits; conditional E-value: 1.3e-05
TIGR03680 104 lmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvske..kalenyeeikefvkgtvaenapiiPvsalkkvnidvllealekei 196
d lL+i+a++++ t+ + l k ++iv nk dl++++ ++l++ eei+++ k a+ii +s l k+ i +l+ +++ i
MMSYN1_0348 256 NADIVLLMIDATKPITDQDTN--IGGLIYDEKKPVIIVVNKWDLIKNKetEILKKEEEIRAYFKYIS--YAKIIFISTLDKTRITKILDLVDE-I 345
456678888888888555554..44444446788***********86523689**********9765..8**************999988776.3 PP
>> TIGR03263 guanyl_kin: guanylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.3 0.0 0.034 6.7 3 29 .. 5 31 .. 3 46 .. 0.82
2 ? -3.1 0.1 6 1.2e+03 137 165 .. 99 128 .. 68 133 .. 0.66
3 ! 7.9 0.0 0.0026 0.52 6 74 .. 179 249 .. 175 280 .. 0.78
Alignments for each domain:
== domain 1 score: 4.3 bits; conditional E-value: 0.034
TIGR03263 3 livisgpsGvGKstlvkklleekeelk 29
++ i+g vGKs+l +++++ek+++
MMSYN1_0348 5 VVAIVGKPNVGKSSLFNRIIKEKKSIV 31
667889999************998876 PP
== domain 2 score: -3.1 bits; conditional E-value: 6
TIGR03263 137 seeviekRlekAkke.lkaaeefdyvivNd 165
+++ i+k l+k+kk + a++++d + d
MMSYN1_0348 99 DDKMIAKILHKSKKPvILAVNKYDKKTIDD 128
445555566665554144556666666555 PP
== domain 3 score: 7.9 bits; conditional E-value: 0.0026
TIGR03263 6 isgpsGvGKstlvkklleekeelklsvSattRkpReg..EvdgkdYfFvskeefeekikeeeflEwaevvg 74
i g vGKs+lv++l++e++ + + tt ++ + + k+Y ++++ +++k k ++ +E ++
MMSYN1_0348 179 IIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDIsfSYNKKKYTVIDTAGIRKKSKLGQTIEKYSYLR 249
4566679****************999*99998876541156888888888888888888888888766665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (435 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 309 (0.0688503); expected 89.8 (0.02)
Passed bias filter: 131 (0.0291889); expected 89.8 (0.02)
Passed Vit filter: 32 (0.00713012); expected 4.5 (0.001)
Passed Fwd filter: 23 (0.00512478); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 23 [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.30
# Mc/sec: 2082.26
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0348 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0350 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0350.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0350/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0350 [L=90]
Description: putative DNA-binding protein HU 1 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-18 64.9 0.3 1.6e-18 64.8 0.3 1.0 1 TIGR00987 himA: integration host factor, alpha subunit
2.6e-18 64.1 0.4 2.8e-18 64.0 0.4 1.0 1 TIGR00988 hip: integration host factor, beta subunit
9e-06 23.6 0.3 9.1e-06 23.6 0.3 1.1 1 TIGR01201 HU_rel: putative DNA-binding protein
------ inclusion threshold ------
0.014 13.5 0.1 0.02 13.0 0.1 1.3 1 TIGR02183 GRXA: glutaredoxin, GrxA family
0.021 12.0 0.0 0.021 12.0 0.0 1.1 1 TIGR03123 one_C_unchar_1: probable H4MPT-linked C1 transfer
Domain annotation for each model (and alignments):
>> TIGR00987 himA: integration host factor, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.8 0.3 1.8e-21 1.6e-18 2 88 .. 1 87 [. 1 90 [] 0.97
Alignments for each domain:
== domain 1 score: 64.8 bits; conditional E-value: 1.8e-21
TIGR00987 2 ltkaelsealfeelGlskreakelvelvleeirdalergeqvklsgfGnfdlrdkrqrpGrnpktGeeipitarrvvtfrpgqklkd 88
+tk el e++ + +sk +a+++v+ +++ i++ l g++v ++gfG+f + ++ +r G np tGe+i i a r f+p+++lk+
MMSYN1_0350 1 MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIDGKEVSVAGFGKFVISERASREGVNPSTGEKIVIPASRSARFKPAKQLKE 87
6999******9999***********************************************************************97 PP
>> TIGR00988 hip: integration host factor, beta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.0 0.4 3.1e-21 2.8e-18 1 88 [. 1 87 [. 1 90 [] 0.96
Alignments for each domain:
== domain 1 score: 64.0 bits; conditional E-value: 3.1e-21
TIGR00988 1 mikselieriateqshlsakdvekavktlleelaealarGdrieirGfGsfslkkraartGrnpktGesveldekyvpffkpGkelrd 88
m+k elie i+ + ++s+ d ek+v+ +++ +++ l G+ + + GfG f + ra+r G np tGe++ + fkp k+l++
MMSYN1_0350 1 MTKKELIEEIIIN-ENISKVDAEKVVNRIFQTISKHLIDGKEVSVAGFGKFVISERASREGVNPSTGEKIVIPASRSARFKPAKQLKE 87
9*********975.689*********************************************************************97 PP
>> TIGR01201 HU_rel: putative DNA-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.6 0.3 1e-08 9.1e-06 31 92 .. 1 62 [. 1 89 [. 0.82
Alignments for each domain:
== domain 1 score: 23.6 bits; conditional E-value: 1e-08
TIGR01201 31 vdleeiaeliseeStlspGdVkgildrlakvlrreLasGktvklgeiGsFrlsltakksgve 92
++ +e++e+i + +s+ d +++r+ +++++ L +Gk+v++ + G F +s a +gv+
MMSYN1_0350 1 MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIDGKEVSVAGFGKFVISERASREGVN 62
67899**********************************************99877654443 PP
>> TIGR02183 GRXA: glutaredoxin, GrxA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.0 0.1 2.2e-05 0.02 37 69 .. 11 43 .. 6 58 .. 0.86
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 2.2e-05
TIGR02183 37 ihaeGiskadlektvGkpvetvpqifvdekavG 69
i+ e isk d ek v + +t+ + ++d k+v
MMSYN1_0350 11 IINENISKVDAEKVVNRIFQTISKHLIDGKEVS 43
688**************************9985 PP
>> TIGR03123 one_C_unchar_1: probable H4MPT-linked C1 transfer pathway protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.0 0.0 2.3e-05 0.021 256 302 .. 15 63 .. 3 85 .. 0.73
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 2.3e-05
TIGR03123 256 tlaekqleqlteaiekvlereglee..vvaagiGeflikeaaerlglev 302
+ + e++ + i + ++++ ++ v +ag+G+f+i+e a+r g++
MMSYN1_0350 15 NISKVDAEKVVNRIFQTISKHLIDGkeVSVAGFGKFVISERASREGVNP 63
444455556666666666666554334**************99998875 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (90 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 213 (0.0474599); expected 89.8 (0.02)
Passed bias filter: 147 (0.032754); expected 89.8 (0.02)
Passed Vit filter: 19 (0.00423351); expected 4.5 (0.001)
Passed Fwd filter: 5 (0.00111408); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 646.22
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0350 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0352 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0352.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0352/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0352 [L=182]
Description: dnaD? 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-55 185.0 27.3 3.3e-55 184.8 27.3 1.0 1 TIGR04548 DnaD_Mollicutes: DnaD family protein
Domain annotation for each model (and alignments):
>> TIGR04548 DnaD_Mollicutes: DnaD family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 184.8 27.3 7.2e-59 3.3e-55 2 178 .] 4 179 .. 3 179 .. 0.99
Alignments for each domain:
== domain 1 score: 184.8 bits; conditional E-value: 7.2e-59
TIGR04548 2 dLlkkGlisKkklLlenYkkigltenqvliillimelsdddkkfiTpselakymnlseeeiekeleklvekdLikikskeidlsplFkkiiiileeee 99
++l+kG+isKkklLle+Ykk++lt+nq+liil+im+l+d+++k++Tp+ la+y+nls+ eiekele l+ekdLi+iks+ id+s+lF+ki +++++++
MMSYN1_0352 4 KMLEKGIISKKKLLLEYYKKLNLTDNQALIILMIMYLNDQTRKMTTPNLLANYLNLSSVEIEKELELLAEKDLIEIKSDFIDFSNLFQKIGLLVNDSF 101
79************************************************************************************************ PP
TIGR04548 100 lakenedffqtieeklsskleedekeelkkllekniskeqlleiinknniknfeellkiiekelkkknksltkfnWLed 178
l+++n +ff+ +e++l + l+e++k +l +ll+++i+keq+l++ ++++ feellk++e lk+ n + +f+WL+d
MMSYN1_0352 102 LIEQNITFFNDLEKNLLFSLTEHQKLKLLDLLKTSIKKEQVLQLSINKKLFSFEELLKEVEIFLKSTN-KFKQFDWLDD 179
*******************************************************************9.578*****98 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (182 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 212 (0.0472371); expected 89.8 (0.02)
Passed bias filter: 69 (0.0153743); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1188.00
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0352 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0353 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0353.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0353/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0353 [L=125]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.3e-12 42.4 0.0 1.5e-11 41.8 0.0 1.3 1 TIGR03544 DivI1A_domain: DivIVA domain
0.001 16.7 3.9 0.0014 16.3 3.9 1.2 1 TIGR04211 SH3_and_anchor: SH3 domain protein
0.0013 14.5 5.3 0.0014 14.4 5.3 1.0 1 TIGR02168 SMC_prok_B: chromosome segregation protein SMC
0.0048 13.8 2.0 0.0062 13.5 2.0 1.1 1 TIGR01843 type_I_hlyD: type I secretion membrane fusion prot
------ inclusion threshold ------
0.013 12.8 0.5 0.015 12.6 0.5 1.2 1 TIGR01281 DPOR_bchL: light-independent protochlorophyllide r
0.02 12.1 2.0 0.03 11.6 1.6 1.4 1 TIGR03414 ABC_choline_bnd: choline ABC transporter, periplas
0.23 9.1 14.0 0.32 8.6 14.0 1.3 1 TIGR04527 mycoplas_twoTM: two transmembrane protein
0.24 9.4 12.8 0.049 11.6 4.2 2.5 3 TIGR02338 gimC_beta: prefoldin, beta subunit
Domain annotation for each model (and alignments):
>> TIGR03544 DivI1A_domain: DivIVA domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.8 0.0 2.6e-14 1.5e-11 1 34 [] 4 37 .. 4 37 .. 0.97
Alignments for each domain:
== domain 1 score: 41.8 bits; conditional E-value: 2.6e-14
TIGR03544 1 LTpeDIrnkrFkkklRGYdaeEVDaFLDrvaddl 34
L+ +I+nk F+ +++GY+ eEV++FLD++++d+
MMSYN1_0353 4 LSVNQIQNKKFNIVYKGYKIEEVNDFLDEIIKDY 37
78899****************************9 PP
>> TIGR04211 SH3_and_anchor: SH3 domain protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.3 3.9 2.4e-06 0.0014 64 139 .. 40 115 .. 24 124 .. 0.72
Alignments for each domain:
== domain 1 score: 16.3 bits; conditional E-value: 2.4e-06
TIGR04211 64 arerleelqkelaelqeelaelkeelaelkqelkelkeelekleeekeklekelekikklsenaleleeeneelke 139
+++++ +l+ +l+++++++++l ++ ++++ el++ +++ kl +++ + + +++i ++++n++e ee+ +++ e
MMSYN1_0353 40 LENQISNLNDQLEQANQKISKLITDKQKTETELDQYVKKNWKLVKDNLNDVDVIKRITRIEKNLVEYEEKLNKIDE 115
5567777777777777777777777777777777777777777777777777777888888888887777776655 PP
>> TIGR02168 SMC_prok_B: chromosome segregation protein SMC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 5.3 2.5e-06 0.0014 266 363 .. 13 113 .. 2 124 .. 0.45
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 2.5e-06
TIGR02168 266 eeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkee.leeelaele..eeleelkeelesleael 360
+ ++ + +++e+++ l+e+ k++ l+++is+l+ ++e+++++ ++l ++++++e++l++ +k+ + +++l++++ +++++++++l + e++l
MMSYN1_0353 13 KFNIVYKGYKIEEVNDFLDEIIKDYVCLENQISNLNDQLEQANQKISKLITDKQKTETELDQYVKKNWKlVKDNLNDVDviKRITRIEKNLVEYEEKL 110
44444444444455555555555555555555555555555555555555555555555444333332202233333221144444444444444444 PP
TIGR02168 361 eea 363
++
MMSYN1_0353 111 NKI 113
443 PP
>> TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.5 2.0 1.1e-05 0.0062 197 270 .. 37 112 .. 31 116 .. 0.89
Alignments for each domain:
== domain 1 score: 13.5 bits; conditional E-value: 1.1e-05
TIGR01843 197 lLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaq..arlaeleeelskardrlqr 270
+ le+++ +l+ +l++++++++kl ++ +++e +l+++++k+ + v+++l+++ +r++++e++l++ +++l++
MMSYN1_0353 37 YVCLENQISNLNDQLEQANQKISKLITDKQKTETELDQYVKKNWKLVKDNLNDVDviKRITRIEKNLVEYEEKLNK 112
5668999999*****************************************9887336999999999999999887 PP
>> TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.6 0.5 2.7e-05 0.015 163 232 .. 47 116 .. 15 123 .. 0.82
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 2.7e-05
TIGR01281 163 vsekaksydvklaGiianrvdkedllekfaervetkvlevlpkkeeirrsrlkgktlfeleeseeeleev 232
++++ ++ + k++ +i+++ ++e l++++++ v ++l + ++i+r +k l e ee+ ++++e+
MMSYN1_0353 47 LNDQLEQANQKISKLITDKQKTETELDQYVKKNWKLVKDNLNDVDVIKRITRIEKNLVEYEEKLNKIDEI 116
455556678899**********************99***********98877788999999877666655 PP
>> TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.6 1.6 5.4e-05 0.03 228 277 .. 43 92 .. 34 96 .. 0.92
Alignments for each domain:
== domain 1 score: 11.6 bits; conditional E-value: 5.4e-05
TIGR03414 228 llknlkftldmenelmekilddkkepeeaakewlkanpevlekWlagvtt 277
++nl+ +l++ n+ ++k++ dk+++e+ +++k+n + ++ l++v
MMSYN1_0353 43 QISNLNDQLEQANQKISKLITDKQKTETELDQYVKKNWKLVKDNLNDVDV 92
589******************************************99975 PP
>> TIGR04527 mycoplas_twoTM: two transmembrane protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.6 14.0 0.00058 0.32 36 127 .. 24 114 .. 6 123 .. 0.63
Alignments for each domain:
== domain 1 score: 8.6 bits; conditional E-value: 0.00058
TIGR04527 36 eeisnlykngvnsisslleeikkilnkinsinteiakiennlnslktelnkt.kenvekvekeleelssianntedsikkkleelegtlrkin 127
ee+++++ ++ ++ l ++i + +++++++n++i+k + ++ +tel ++ k+n + v+ +l++ i+ i+k+l e+e++l+ki+
MMSYN1_0353 24 EEVNDFLDEIIKDYVCLENQISNLNDQLEQANQKISKLITDKQKTETELDQYvKKNWKLVKDNLNDVDVIKRI--TRIEKNLVEYEEKLNKID 114
6777788888888888888888888888777666666666666666666665455566666666666333222..234444444444444433 PP
>> TIGR02338 gimC_beta: prefoldin, beta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.1 0.0 0.79 4.4e+02 13 38 .. 7 28 .. 3 36 .. 0.52
2 ? 11.6 4.2 8.8e-05 0.049 3 36 .. 42 75 .. 40 92 .. 0.86
3 ? 2.9 0.4 0.044 24 22 46 .. 92 116 .. 78 120 .. 0.74
Alignments for each domain:
== domain 1 score: -1.1 bits; conditional E-value: 0.79
TIGR02338 13 qqlqqqlqavltqkqqveaelkevek 38
+q+q++ +++ + +++e ev+
MMSYN1_0353 7 NQIQNKKFNIVYKGYKIE----EVND 28
455555555555554444....4444 PP
== domain 2 score: 11.6 bits; conditional E-value: 8.8e-05
TIGR02338 3 pevqeqlaqlqqlqqqlqavltqkqqveaelkev 36
+++ + ql+q++q++++++t kq+ e+el +
MMSYN1_0353 42 NQISNLNDQLEQANQKISKLITDKQKTETELDQY 75
67888889*********************99764 PP
== domain 3 score: 2.9 bits; conditional E-value: 0.044
TIGR02338 22 vltqkqqveaelkevekaLeelekl 46
v+ + ++e++l e e+ L+ ++++
MMSYN1_0353 92 VIKRITRIEKNLVEYEEKLNKIDEI 116
4556678999999999999999887 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (125 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 789 (0.175802); expected 89.8 (0.02)
Passed bias filter: 202 (0.0450089); expected 89.8 (0.02)
Passed Vit filter: 34 (0.00757576); expected 4.5 (0.001)
Passed Fwd filter: 8 (0.00178253); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 815.93
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0353 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0359 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0359.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0359/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0359 [L=509]
Description: RNase_Y: ribonuclease Y 5=Equivalog RNA metabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4e-155 515.1 25.5 4.5e-155 515.0 25.5 1.0 1 TIGR03319 RNase_Y: ribonuclease Y
4.7e-27 91.7 0.6 9.9e-27 90.6 0.6 1.6 1 TIGR00277 HDIG: HDIG domain
3.2e-08 31.4 1.1 2.2e-07 28.8 0.7 2.4 2 TIGR00295 TIGR00295: TIGR00295 family protein
6.4e-07 27.4 0.5 0.003 15.4 0.0 2.6 2 TIGR00488 TIGR00488: putative HD superfamily hydrolase
9.1e-06 23.5 2.1 3.3e-05 21.7 2.1 2.1 1 TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domai
0.00059 18.1 2.0 0.0028 16.0 2.0 2.2 1 TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
------ inclusion threshold ------
0.26 9.3 9.3 0.0093 14.0 1.2 2.7 2 TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD
Domain annotation for each model (and alignments):
>> TIGR03319 RNase_Y: ribonuclease Y
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 515.0 25.5 7.1e-158 4.5e-155 2 512 .. 5 507 .. 4 509 .] 0.94
Alignments for each domain:
== domain 1 score: 515.0 bits; conditional E-value: 7.1e-158
TIGR03319 2 lllvvalvvglligyllakkiaekkleeaeeeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkekl 99
+++++++++g++ +++ +++ ++ ++ k++ie+ +kea++ kk++l + +e+ +++ + k + +++el++ +++l+ + + l+r +
MMSYN1_0359 5 IIIILSVFLGIFFICFVISSVILLYFWKS-KSRKHLIEQYTKEAKQAKKQVLANGYKEISEAKMLFLKRSELEKNELDRVKEQLDLRANDLKRSQ--- 98
56777778888777777777766655554.45688999****************************99999999999999999999999999888... PP
TIGR03319 100 ekkeeelekkekeleekekeleekeeeleellkeqkeeLekisgltqeeAkellleeveeelkeeaaklikeieeeakeeadkkakeilalaiqrlaa 197
e +e+k ++l++ +le+++ ++++++ + Le +sglt+ +Akell++++++++++e +++k++e +a+++a+ +++il++a++r+
MMSYN1_0359 99 ----EIVESKSQRLDAGILDLEKRKFLVDQKEEYLIKLLEDVSGLTKYQAKELLIKQIKNKSEKELISILKNAELQAHSKAKIISNNILISAMERIKV 192
....56666666666666666666666666677777889*********************************************************** PP
TIGR03319 198 dvvaestvsvvslpndemkGRiiGreGRniralEtltGvdliiDdtPeavilsgfdpvRreiArlalekLiaDGrihPariEeivekakkevdekike 295
+ ++++t+++v+lp+d++kGRiiG++GRn++++E++ Gvd+++D+tP++v++s+f+p+RreiA+ +le+Li DGri+P +iE+ ++k ++e++ i+e
MMSYN1_0359 193 ELTSQRTTNIVKLPSDDLKGRIIGKDGRNMKTFEQIGGVDIVVDETPNVVVVSSFNPIRREIATRTLEQLIIDGRIQPVKIENELKKQEQELEYIIQE 290
************************************************************************************************** PP
TIGR03319 296 eGeeaafevgvhglhpelikllGrlkfrtsygqnvlkHsievaklagllaaelgldvklAkRaglLHDiGkavdhevegsHveiGaelakkykeskev 393
+G +++ e++++++ el+kl+G+lkfrtsygqnvl+Hsievakl+g +a+elgldv++A RaglLHDiGka+d e +gsHv +Gae+a+ky+e++ +
MMSYN1_0359 291 TGLNTIKELNINDIDIELVKLIGKLKFRTSYGQNVLAHSIEVAKLSGAIASELGLDVEKAIRAGLLHDIGKAIDFEKQGSHVVLGAEIARKYNEDPII 388
************************************************************************************************** PP
TIGR03319 394 vnaiaaHHedvepksvlavlvaaadalsaaRpGARreslenyikRlekLEeiaesfegveksyAiqAGReiRvivkpekvsDeeavllardiakkiee 491
+n+i++HHed+e++s +a++va+ad++sa+RpGAR ++++++i R++++E+i +s+ gv k+yA+q GR+iR+iv+p sD + +l+ ++++++i++
MMSYN1_0359 389 INSIESHHEDKEKSSEIAAIVAIADSISASRPGARYNAIDEFILRMHEIEKIGNSIPGVAKTYALQSGRQIRLIVDPLVASDLDLALILEKMKEQIKD 486
************************************************************************************************** PP
TIGR03319 492 eleYpGqikvtviREtravey 512
++ pG+i +tviRE++ +++
MMSYN1_0359 487 KVIIPGEITITVIREKKETDI 507
****************98876 PP
>> TIGR00277 HDIG: HDIG domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.6 0.6 1.5e-29 9.9e-27 1 84 [] 321 398 .. 321 398 .. 0.98
Alignments for each domain:
== domain 1 score: 90.6 bits; conditional E-value: 1.5e-29
TIGR00277 1 leqgvleHslevaklaealaeelgadvelarrgaLlHDIGKaktregfiekviiesHvkvGaeiarklgfpeevvdiiaehhgk 84
++q+vl Hs+evakl+ a+a+elg+dve a+r++LlHDIGKa+++e ++ sHv++Gaeiark+++++ +++ i++hh++
MMSYN1_0359 321 YGQNVLAHSIEVAKLSGAIASELGLDVEKAIRAGLLHDIGKAIDFE------KQGSHVVLGAEIARKYNEDPIIINSIESHHED 398
78********************************************......8*****************************85 PP
>> TIGR00295 TIGR00295: TIGR00295 family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.8 0.7 3.4e-10 2.2e-07 11 88 .. 322 396 .. 309 408 .. 0.87
2 ? -0.2 0.0 0.27 1.7e+02 116 144 .. 408 439 .. 400 453 .. 0.82
Alignments for each domain:
== domain 1 score: 28.8 bits; conditional E-value: 3.4e-10
TIGR00295 11 desvvehclavakvalelaeeikkkgyevdvelvekGallhdiGrarthg..vehavkgaeilrklGvdekvvriaerhv 88
++v+ h++ vak + +a e+ +dve + +llhdiG+a+ + h+v gaei rk+ d+ ++ +e h
MMSYN1_0359 322 GQNVLAHSIEVAKLSGAIASELG-----LDVEKAIRAGLLHDIGKAIDFEkqGSHVVLGAEIARKYNEDPIIINSIESHH 396
57999**************9999.....9***999************8874467*******************9999985 PP
== domain 2 score: -0.2 bits; conditional E-value: 0.27
TIGR00295 116 ivafadnlil...Gvkeveidevikkleerlg 144
iva ad + G++ ide+i +++e+++
MMSYN1_0359 408 IVAIADSISAsrpGARYNAIDEFILRMHEIEK 439
8999999875444899999*****99999865 PP
>> TIGR00488 TIGR00488: putative HD superfamily hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.4 0.0 4.7e-06 0.003 9 47 .. 325 363 .. 318 370 .. 0.90
2 ! 9.5 0.1 0.0003 0.19 74 132 .. 371 429 .. 366 440 .. 0.82
Alignments for each domain:
== domain 1 score: 15.4 bits; conditional E-value: 4.7e-06
TIGR00488 9 RlqhilgveqlavqlaeanklDskkaevaglyhDlakfl 47
l h + v +l+ +a +lD ka agl+hD+ k +
MMSYN1_0359 325 VLAHSIEVAKLSGAIASELGLDVEKAIRAGLLHDIGKAI 363
579********************************9976 PP
== domain 2 score: 9.5 bits; conditional E-value: 0.0003
TIGR00488 74 hadvgayilkeefGvddedvlkairnhtvgakkmslLdmiiyvaDklePnR..akgieidk 132
h ga i+++ +d+ ++++i h ++k s + i+ +aD + R a++ id+
MMSYN1_0359 371 HVVLGAEIARKYN--EDPIIINSIESHHEDKEKSSEIAAIVAIADSISASRpgARYNAIDE 429
5556666666553..899******************************9997655555655 PP
>> TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.7 2.1 5.1e-08 3.3e-05 98 152 .. 209 267 .. 136 287 .. 0.82
Alignments for each domain:
== domain 1 score: 21.7 bits; conditional E-value: 5.1e-08
TIGR03665 98 rikgriIGeeGktrkiieeltgvkisvyg.ktvsiiGeieqv..kiareAieml.ieGk 152
+kgriIG++G+ k+ e++ gv+i+v++ +v ++ +++ + +ia + +e l i+G+
MMSYN1_0359 209 DLKGRIIGKDGRNMKTFEQIGGVDIVVDEtPNVVVVSSFNPIrrEIATRTLEQLiIDGR 267
58*************************99558999988776533689999987515676 PP
>> TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.0 2.0 4.3e-06 0.0028 56 128 .. 150 228 .. 142 242 .. 0.77
Alignments for each domain:
== domain 1 score: 16.0 bits; conditional E-value: 4.3e-06
TIGR01952 56 kkveellgkk.velveese....dleefvknklapvkvknvkvseknskkvayvevep.edkgvaiGkdGknierakel 128
k+++++ +k+ +++++++e ++++ n ++ +++++kv + ++++ +v++ ++kg++iGkdG+n+++ ++
MMSYN1_0359 150 KQIKNKSEKElISILKNAElqahSKAKIISNNILISAMERIKVELTSQRTTNIVKLPSdDLKGRIIGKDGRNMKTFEQI 228
66666666654566666552222567899999999999*****999999999999965167************998877 PP
>> TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.5 1.6 1.7 1.1e+03 129 129 .. 109 109 .. 36 167 .. 0.57
2 ? 14.0 1.2 1.5e-05 0.0093 3 45 .. 327 362 .. 325 470 .. 0.93
Alignments for each domain:
== domain 1 score: -2.5 bits; conditional E-value: 1.7
TIGR01596 129 r 129
MMSYN1_0359 109 D 109
0 PP
== domain 2 score: 14.0 bits; conditional E-value: 1.5e-05
TIGR01596 3 eHlldvaavaellknlreklaekigelrellklaallHDlGKa 45
H+ +va++ + +a+++g e + a+llHD+GKa
MMSYN1_0359 327 AHSIEVAKLSG-------AIASELGLDVEKAIRAGLLHDIGKA 362
7**********.......*******88888888*********8 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (509 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 556 (0.123886); expected 89.8 (0.02)
Passed bias filter: 162 (0.0360963); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 7 (0.00155971); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.24
# Mc/sec: 3045.61
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0359 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0360 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0360.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0360/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0360 [L=447]
Description: ffh: signal recognition particle protein 5=Equivalog Protein export
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-175 581.2 19.3 3.2e-175 581.0 19.3 1.0 1 TIGR00959 ffh: signal recognition particle protein
5.4e-85 283.7 14.5 6.8e-85 283.4 14.5 1.0 1 TIGR01425 SRP54_euk: signal recognition particle protein SRP
2.2e-65 218.7 6.3 4.1e-65 217.7 6.3 1.4 1 TIGR00064 ftsY: signal recognition particle-docking protein
5.9e-23 80.2 4.4 5.9e-23 80.2 4.4 1.6 2 TIGR03499 FlhF: flagellar biosynthesis protein FlhF
1.4e-06 26.1 2.2 0.00075 17.2 0.0 2.9 4 TIGR00455 apsK: adenylyl-sulfate kinase
7.1e-05 19.8 3.5 0.00074 16.4 1.2 2.3 2 TIGR02928 TIGR02928: orc1/cdc6 family replication initiation
0.0001 19.6 0.1 0.00034 18.0 0.0 2.0 2 TIGR03018 pepcterm_TyrKin: exopolysaccharide/PEP-CTERM locus
0.001 16.3 10.4 0.021 12.0 0.2 3.7 4 TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and
0.003 15.3 1.9 0.052 11.3 1.8 2.7 1 TIGR00231 small_GTP: small GTP-binding protein domain
0.0085 13.3 4.0 0.0086 13.3 1.7 2.1 2 TIGR01420 pilT_fam: twitching motility protein
0.01 13.5 0.3 0.01 13.5 0.3 2.3 2 TIGR00041 DTMP_kinase: dTMP kinase
------ inclusion threshold ------
0.014 12.8 0.1 0.014 12.8 0.1 3.0 3 TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase
0.61 7.5 10.1 1.5 6.2 0.0 3.6 4 TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC4
Domain annotation for each model (and alignments):
>> TIGR00959 ffh: signal recognition particle protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 581.0 19.3 9.2e-178 3.2e-175 2 426 .. 5 425 .. 4 427 .. 0.98
Alignments for each domain:
== domain 1 score: 581.0 bits; conditional E-value: 9.2e-178
TIGR00959 2 esLseklkkileklskkkkitekdikealkeirlaLleaDVnlkvvkefikkvkekalgqevlkslspkqqlikivkeeLvallgeesaelklaekkp 99
++Ls++++k++ek +k+++++e++ike+lkeirl+LleaDVn++++ke+i++vk+kalg ++++ s++qq+ikiv+eeLv++lg+e+a+l+++ kkp
MMSYN1_0360 5 DFLSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELVNILGKENAPLDIN-KKP 101
689*****************************************************************************************96.779 PP
TIGR00959 100 avillvGLqGsGKtttaaKlakklkkkekkkvllvalDlyRpaAveqLkvlgeqvgvpvfekekekspveiakealeeakeekvdvvivDtaGRlqid 197
+v+++vGLqGsGKttta+Kla+ l+kk+kkkvllv+lD+yRp+A+eqL +lg++++++vfek k ++pv++a++al++ake+++dvvi+DtaGRlq+d
MMSYN1_0360 102 SVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKGK-QDPVKTAEQALQYAKENNFDVVILDTAGRLQVD 198
**************************************************************99.88******************************* PP
TIGR00959 198 eelmeelkeikevlnPdeillVvdaltGqdavnvakeFderlgltgvvltklDgDargGaaLsvksvtgkPikfigvgEkledleeFhperiaeRilg 295
+ lm+el+++k++++P+eillVvd+++Gq+++nv++eF+ +l+l+gvv+tklDgDargGa+Ls++++t+ Pikfig gE +++l +F+p+r+a+R++g
MMSYN1_0360 199 QFLMKELDNLKKKTSPNEILLVVDGMSGQEIINVTNEFNSKLKLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMG 296
************************************************************************************************** PP
TIGR00959 296 mGDvlsLvekaeevvdeeeakklaeklakeefdleDlleqlrqikklGslskllkmlPglgkvkksekdldedekklkrieaiissmtkeErknpkil 393
mGD+ +L+e+a e++de++++k++++++ ++fdleDl++ql+qi k+Gsl+kl+kmlP ++ k+se++++++++kl+ ++++++smt +Er++p++l
MMSYN1_0360 297 MGDIETLFERAVENIDERSIQKTMNRMFLGQFDLEDLRNQLAQIAKMGSLNKLMKMLP-IN--KVSESQIQDAQRKLAVFSILMDSMTLKERRDPRVL 391
**********************************************************.54..79999****************************** PP
TIGR00959 394 n.asRkkRiakGsGtsvsdvnklikefeqakklm 426
+ sRk+Ri+kGsG+s +++n+li++fe+ kk++
MMSYN1_0360 392 KaISRKNRIIKGSGRSEKEFNELINSFEKGKKQV 425
*99**************************99976 PP
>> TIGR01425 SRP54_euk: signal recognition particle protein SRP54
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 283.4 14.5 2e-87 6.8e-85 7 424 .. 9 420 .. 5 424 .. 0.93
Alignments for each domain:
== domain 1 score: 283.4 bits; conditional E-value: 2e-87
TIGR01425 7 sklssalrs.lssatvideevlnellkeistallesdvnvklvrklrenikkkinleelasglnkrkliqkavfeelvnlvdpkveafkpkkgkssvi 103
+++++++++ ++++t +ee ++e lkei +lle+dvn+ +++ +n+k+k +++g + + k+v eelvn++ + ++ +k k+sv+
MMSYN1_0360 9 KRMQKSIEKnMKNST-LNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELVNILGKENAPLDINK-KPSVV 104
566666654167765.68999**************************************************************999999987.789** PP
TIGR01425 104 mfvGlqGaGktttitklalyykkkGf.kvalvcadtfraGafdqlkqnatkakipfyGsylesdpvkiaseGvekfkkekfdiiivdtsGrhkqeeel 200
m+vGlqG+Gkttt kla+ +kk kv lv+ d +r Ga +ql q +k++ + + ++dpvk a + ++ k+++fd++i+dt+Gr + ++ l
MMSYN1_0360 105 MMVGLQGSGKTTTANKLAYLLNKKNKkKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFE-KGKQDPVKTAEQALQYAKENNFDVVILDTAGRLQVDQFL 201
*******************9877765167899**********************9996.6789*********************************** PP
TIGR01425 201 feemlqvaeaikpdsiifvmdgsiGqaaesqakafkdsvevgsviitkldGhakGGGalsavaatkspiifiGtGekvddleifdaksfvskllGlGd 298
++e+ ++++ + p++i++v+dg Gq + ++ f + +++ v++tkldG a+GG +ls tk pi fiG Ge + l f +k + +l+G+Gd
MMSYN1_0360 202 MKELDNLKKKTSPNEILLVVDGMSGQEIINVTNEFNSKLKLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299
************************************************************************************************** PP
TIGR01425 299 lkGlidkvkdlklddeekelieklkeGkftlrdlkeqlqnllkmGplgnilsmipGlssellskgneeessaklkkllvildsmtdkeldstdkvllk 396
++ l +++ + + +++++++ G+f l dl++ql + kmG l ++++m+p +s+++++++++kl ++ +++dsmt ke + +vl k
MMSYN1_0360 300 IETLFERAVENIDERSIQKTMNRMFLGQFDLEDLRNQLAQIAKMGSLNKLMKMLPIN---KVSESQIQDAQRKLAVFSILMDSMTLKERR-DPRVL-K 392
******98888888888899**********************************854...599************************964.45665.5 PP
TIGR01425 397 eesrivrvarGsGraireveelleqykk 424
sr +r+ +GsGr+ +e +el++ ++k
MMSYN1_0360 393 AISRKNRIIKGSGRSEKEFNELINSFEK 420
69********************998765 PP
>> TIGR00064 ftsY: signal recognition particle-docking protein FtsY
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 217.7 6.3 1.2e-67 4.1e-65 4 278 .. 30 294 .. 27 295 .. 0.94
Alignments for each domain:
== domain 1 score: 217.7 bits; conditional E-value: 1.2e-67
TIGR00064 4 eevleeLeevLleaDvglevvekiieelkkelkekkvkeeeklkellkeelkealkeileketklelkelkeekkpnvillvGvNGvGKTttiaKlak 101
+e+l+e++ LleaDv++e++++ii+++k+++ + ++e ++++ + + ++e+l +il ke+ l+ +kkp v+++vG+ G+GKTtt Kla
MMSYN1_0360 30 KETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELVNILGKENA----PLDINKKPSVVMMVGLQGSGKTTTANKLAY 123
68899**************************************999999999999998877664....346799************************ PP
TIGR00064 102 llkkeg.kkvllaAgDTFrAaAieQleewakrlgvkvikqkegadpaavifdaikkakaknidvvliDTaGRlqnkknLmdelkkikrvikkvkkeap 198
ll+k++ kkvll+ D +r +AieQl + +++++ +v ++ ++dp + +a++ ak++n dvv+ DTaGRlq ++ Lm+el+ +k+ ++ p
MMSYN1_0360 124 LLNKKNkKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKG-KQDPVKTAEQALQYAKENNFDVVILDTAGRLQVDQFLMKELDNLKKKTS------P 214
*98776257999999*********************98765.56*****************************************998777......* PP
TIGR00064 199 devllvldattGqnaleqakvFneaveldgiilTKlDgtakgGivlaikeelklpvkligvGekidDLaeFdaeefveal 278
+e+llv+d++ Gq+ ++ ++Fn ++l+g+++TKlDg+a+gG+ l+i++ +klp+k+ig Ge+++ La+F ++++ ++l
MMSYN1_0360 215 NEILLVVDGMSGQEIINVTNEFNSKLKLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRL 294
**************************************************************************999988 PP
>> TIGR03499 FlhF: flagellar biosynthesis protein FlhF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 80.2 4.4 1.7e-25 5.9e-23 118 286 .] 9 193 .. 8 193 .. 0.89
2 ? -2.1 0.1 2.1 7.2e+02 136 161 .. 342 367 .. 298 422 .. 0.64
Alignments for each domain:
== domain 1 score: 80.2 bits; conditional E-value: 1.7e-25
TIGR03499 118 kalkellekqlselal..eeedperakllkklleagvseelarelleklke..........kedaeeareklreaLekklsvkkeedeilekggviaL 203
k +++++ek +++ +l e+ +++ +++ llea+v+ e a+e+++++k+ ++ +++ + ++e L + l +++ +i++k+ v+++
MMSYN1_0360 9 KRMQKSIEKNMKNSTLneENIKETLKEIRLSLLEADVNIEAAKEIINNVKQkalggyisegASAHQQMIKIVHEELVNILGKENAPLDINKKPSVVMM 106
568999999999887788999*************************************9988888899999*************************** PP
TIGR03499 204 vGptGvGKTTTlAKLAarfvlehgkkkValiTtDtyRiGAveQLktYakilgvpvkvvkdpkeleea...le..elkdkdliLiDTaG 286
vG G+GKTTT KLA + + +kkkV l+ +D yR GA eQL + ++ + +v +++ +++a l+ + +++d+++ DTaG
MMSYN1_0360 107 VGLQGSGKTTTANKLAYLLNKK-NKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKGKQDPVKTAeqaLQyaKENNFDVVILDTAG 193
*****************99988.999*****************************887766655544111331145689********9 PP
== domain 2 score: -2.1 bits; conditional E-value: 2.1
TIGR03499 136 edperakllkklleagvseelarell 161
+ ++ +kl+k+l + vse+ +++
MMSYN1_0360 342 KMGSLNKLMKMLPINKVSESQIQDAQ 367
33344444444444444444444433 PP
>> TIGR00455 apsK: adenylyl-sulfate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.4 0.0 4.5 1.6e+03 44 64 .. 16 35 .. 11 62 .. 0.56
2 ! 17.2 0.0 2.2e-06 0.00075 8 57 .. 91 140 .. 81 157 .. 0.83
3 ! 7.5 0.0 0.0021 0.71 10 56 .. 208 254 .. 200 261 .. 0.87
4 ? -2.6 0.0 2.5 8.7e+02 125 146 .. 379 400 .. 357 410 .. 0.70
Alignments for each domain:
== domain 1 score: -3.4 bits; conditional E-value: 4.5
TIGR00455 44 ekglrvevLDGDnvrhgLnkd 64
ek+++ L+ +n+++ L+ +
MMSYN1_0360 16 EKNMKNSTLNEENIKETLK-E 35
5666666777777766664.2 PP
== domain 2 score: 17.2 bits; conditional E-value: 2.2e-06
TIGR00455 8 eerkakkkqksvvlWltGlsgsGkstianalekkLeekglrvevLDGDnv 57
e+ ++k +v+ + Gl gsGk+t an l+ L++k+ + +L G +
MMSYN1_0360 91 ENAPLDINKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDI 140
555556678888999*************************9999988544 PP
== domain 3 score: 7.5 bits; conditional E-value: 0.0021
TIGR00455 10 rkakkkqksvvlWltGlsgsGkstianalekkLeekglrvevLDGDn 56
k+k+ + ++l + G+sg ++n + kL+ +g+ v+ LDGD+
MMSYN1_0360 208 LKKKTSPNEILLVVDGMSGQEIINVTNEFNSKLKLSGVVVTKLDGDA 254
556666677889999*******************************6 PP
== domain 4 score: -2.6 bits; conditional E-value: 2.5
TIGR00455 125 pLevceqrDpkGLykkareGei 146
+ + e+rDp+ L + +r+ i
MMSYN1_0360 379 SMTLKERRDPRVLKAISRKNRI 400
4678899999998887777665 PP
>> TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.4 1.2 2.1e-06 0.00074 36 159 .. 97 211 .. 71 252 .. 0.72
2 ? 3.1 0.0 0.023 8 261 343 .. 356 436 .. 351 442 .. 0.79
Alignments for each domain:
== domain 1 score: 16.4 bits; conditional E-value: 2.1e-06
TIGR02928 36 rgsrpsnvliyGktGtGKtavtkkvlkeleeaaeekdvrvstvyvnCqelsteyqvlvelvnqlaeseeevpetGlstkevfeelvkeleeredslii 133
+++ps v+++G G+GKt++++k+ l+++ ++k v +v ++ + + + lv+l ++ + +v e+G + e + ++++ ++
MMSYN1_0360 97 INKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKK---VLLVGLDIYR-PGAIEQLVQLGQKT---NTQVFEKGKQDPVKTAEQALQYAKENNFDVV 187
4899***************************99985...7777777766.56677777888877...9999999987665554444455567777788 PP
TIGR02928 134 vLDEiDklvkkeadelLy.eLsraeen 159
+LD +l + d++L+ eL ++++
MMSYN1_0360 188 ILDTAGRL---QVDQFLMkELDNLKKK 211
99999999...6666665245555444 PP
== domain 2 score: 3.1 bits; conditional E-value: 0.023
TIGR02928 261 ekvteehvekAqekiek.erllelirglpthsklvLlaiaalakkeedevrtgevyevYkevaeelgvdpltqrrisdllnele 343
+kv e+++++Aq+k+ + ++l++++ + vL+ai + k++ +g+ +++++e+ ++ + + + +i++++++ +
MMSYN1_0360 356 NKVSESQIQDAQRKLAVfSILMDSMTLKERRDPRVLKAISR---KNRIIKGSGRSEKEFNELINSFEKGKKQVLEITKMIKSGR 436
6899**********96527889999999999999****994...4555666778888888888888887777777777777655 PP
>> TIGR03018 pepcterm_TyrKin: exopolysaccharide/PEP-CTERM locus tyrosine autokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.0 0.0 9.7e-07 0.00034 33 84 .. 100 149 .. 67 194 .. 0.80
2 ? -3.5 0.0 3.7 1.3e+03 119 135 .. 403 419 .. 389 431 .. 0.70
Alignments for each domain:
== domain 1 score: 18.0 bits; conditional E-value: 9.7e-07
TIGR03018 33 knknlimvtsalsgeGksftaiNLAislaleldktvLliDadlrrPslselL 84
k + ++mv l+g Gk+ ta LA l + k+vLl+ d+ rP + e L
MMSYN1_0360 100 KPSVVMMV--GLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRPGAIEQL 149
33334444..59**********************************977665 PP
== domain 2 score: -3.5 bits; conditional E-value: 3.7
TIGR03018 119 paGkrhenatEllaSer 135
++G+ ++ +El+ S +
MMSYN1_0360 403 GSGRSEKEFNELINSFE 419
67888888888887754 PP
>> TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.0 0.2 0.54 1.8e+02 181 263 .. 29 62 .. 11 93 .. 0.42
2 ! 12.0 0.2 6.2e-05 0.021 31 67 .. 96 132 .. 74 136 .. 0.85
3 ? 3.5 0.0 0.024 8.2 65 101 .. 163 199 .. 154 215 .. 0.87
4 ? 4.5 1.4 0.012 4 212 337 .. 297 425 .. 290 437 .. 0.72
Alignments for each domain:
== domain 1 score: -1.0 bits; conditional E-value: 0.54
TIGR02397 181 iverlkkilkkekikveeeaLeliarkaeGslRDalslldqlislskgkitlekveellglvseekllelleailkkdleeal 263
i+e+lk+ l l++ + +e +++i+++ ++al
MMSYN1_0360 29 IKETLKE-------------------------------------------------IRLSLLEADVNIEAAKEIINNVKQKAL 62
2222222.................................................222333333333333333333333332 PP
== domain 2 score: 12.0 bits; conditional E-value: 6.2e-05
TIGR02397 31 kknkiahayLfsGprGvGKTsiArilAkalNCenked 67
+ nk + ++ G +G GKT++A lA lN +nk++
MMSYN1_0360 96 DINKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKK 132
55677778899********************999876 PP
== domain 3 score: 3.5 bits; conditional E-value: 0.024
TIGR02397 65 kedgepcneCesCkeinegksldviEiDaAsnngvdd 101
k +++p ++ e+ + +++++ dv+ +D A + +vd+
MMSYN1_0360 163 KGKQDPVKTAEQALQYAKENNFDVVILDTAGRLQVDQ 199
557899999***************************8 PP
== domain 4 score: 4.5 bits; conditional E-value: 0.012
TIGR02397 212 lRDalslldqlis.lskgkitlekveellglvseekllelleailk.kdleealkl..leellekgvdleklledliellrdlllvkktk.selleve 304
+ D ++l+++++ + +++i+++ + +lg + e+l + l++i+k l++++k+ +++++e++++ + ++++l+d +++k+ ++l+
MMSYN1_0360 297 MGDIETLFERAVEnIDERSIQKTMNRMFLGQFDLEDLRNQLAQIAKmGSLNKLMKMlpINKVSESQIQDAQRKLAVFSILMDSMTLKERRdPRVLKAI 394
66888888887761455588888888899999999998888888775677888776335788888888888888888999999999998865555555 PP
TIGR02397 305 eeeeeslkekaeklslekllellkilleaekel 337
+++++ + k + s+++++el++ +++++k++
MMSYN1_0360 395 SRKNRII--KGSGRSEKEFNELINSFEKGKKQV 425
5555544..344456667778888887777765 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.3 1.8 0.00015 0.052 3 67 .. 101 198 .. 99 225 .. 0.75
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 0.00015
TIGR00231 3 eikivivGhvdvGKstLlnsllknkisiteskp..................gvtrdyvteqieedGkt.................ykvnllDTaGqed 65
+ +vG ++GK+t+ n+l++ + + + + +++++t+ + e+Gk+ + v +lDTaG+ +
MMSYN1_0360 101 PSVVMMVGLQGSGKTTTANKLAYLLNKKNKK-KvllvgldiyrpgaieqlvQLGQKTNTQ-VFEKGKQdpvktaeqalqyakennFDVVILDTAGRLQ 196
56799**************997644223333.2356778777777777777777777775.66677669999999999999999999999****9544 PP
TIGR00231 66 fd 67
+d
MMSYN1_0360 197 VD 198
43 PP
>> TIGR01420 pilT_fam: twitching motility protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.3 1.7 2.5e-05 0.0086 47 155 .. 26 134 .. 7 140 .. 0.63
2 ? -1.5 0.0 0.75 2.6e+02 308 340 .. 149 181 .. 141 184 .. 0.53
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 2.5e-05
TIGR01420 47 qkllkeileekqreeleekkeldfavslaelaRfR.vnvfkqrgava..lvlRvipskiptleelglpevlkelaekkrGlilvtGptGsGKsttlAs 141
++ +ke l+e + + le++ +++ a ++ ++ + + + ++ga+a +++++ +++ ++ lg + ++ +kk +++++G GsGK+tt
MMSYN1_0360 26 EENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKaLGGYISEGASAhqQMIKIVHEELVNI--LGKENAPLDI-NKKPSVVMMVGLQGSGKTTTANK 120
45566677777777777777777777765444433145566665555113455555554433..5555554554.55667999************999 PP
TIGR01420 142 lidyinkekakhil 155
l +nk+++k++l
MMSYN1_0360 121 LAYLLNKKNKKKVL 134
99999999988877 PP
== domain 2 score: -1.5 bits; conditional E-value: 0.75
TIGR01420 308 gakeGmqtldqslaklvkkglitleealeaaks 340
+ G +t q ++k ++ t e+al++ak+
MMSYN1_0360 149 LVQLGQKTNTQVFEKGKQDPVKTAEQALQYAKE 181
334445555555555555555566666666665 PP
>> TIGR00041 DTMP_kinase: dTMP kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.8 0.6 3 1e+03 147 175 .. 12 42 .. 7 61 .. 0.37
2 ! 13.5 0.3 2.9e-05 0.01 7 37 .. 104 134 .. 99 187 .. 0.86
Alignments for each domain:
== domain 1 score: -2.8 bits; conditional E-value: 3
TIGR00041 147 skrgeld..reelekldflekvrekylelad 175
+k e++ ++ l++ ++ e+++e l+l++
MMSYN1_0360 12 QKSIEKNmkNSTLNEENIKETLKEIRLSLLE 42
4444422113333333333444444444444 PP
== domain 2 score: 13.5 bits; conditional E-value: 2.9e-05
TIGR00041 7 iviEGidGaGKTtqlellkkllkeeglkvll 37
+++ G+ G+GKTt +++l+ ll++++ k++l
MMSYN1_0360 104 VMMVGLQGSGKTTTANKLAYLLNKKNKKKVL 134
5677********************7766654 PP
>> TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.8 1.3 0.093 32 196 242 .. 12 59 .. 5 64 .. 0.76
2 ? 12.8 0.1 4.1e-05 0.014 2 48 .. 104 155 .. 103 219 .. 0.65
3 ? -1.9 0.4 1.3 4.3e+02 163 198 .. 390 425 .. 326 439 .. 0.55
Alignments for each domain:
== domain 1 score: 1.8 bits; conditional E-value: 0.093
TIGR03574 196 rqivgeliktgkldkeeikk.lselrkeflksvkkikaekldaekvek 242
++ + + +k l++e+ik+ l e+r ++l+ +i+a k+ +++v++
MMSYN1_0360 12 QKSIEKNMKNSTLNEENIKEtLKEIRLSLLEADVNIEAAKEIINNVKQ 59
455667789999999999864789999999876678888888887765 PP
== domain 2 score: 12.8 bits; conditional E-value: 4.1e-05
TIGR03574 2 iiltGlPgvGkstfskelakklseknid.viilgtdllr....eslpvWkek 48
+++ Gl g+Gk+t + +la l++kn + v+++g d+ r e+l + +k
MMSYN1_0360 104 VMMVGLQGSGKTTTANKLAYLLNKKNKKkVLLVGLDIYRpgaiEQLVQLGQK 155
7899*******************99986156789999985444455444432 PP
== domain 3 score: -1.9 bits; conditional E-value: 1.3
TIGR03574 163 ileiseeklkvekkkkkkkekkessvekidkltrqi 198
+l+ k+++ k + +++ ++ ++ +k +q+
MMSYN1_0360 390 VLKAISRKNRIIKGSGRSEKEFNELINSFEKGKKQV 425
333333333333333333333333333333333333 PP
>> TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.4 0.1 0.46 1.6e+02 149 202 .. 7 59 .. 2 73 .. 0.70
2 ? 5.7 0.3 0.006 2.1 1 32 [. 105 137 .. 105 140 .. 0.81
3 ? 6.2 0.0 0.0044 1.5 116 134 .. 176 192 .. 145 239 .. 0.83
4 ? -1.7 0.2 1.1 3.8e+02 188 218 .. 354 384 .. 313 402 .. 0.57
Alignments for each domain:
== domain 1 score: -0.4 bits; conditional E-value: 0.46
TIGR00345 149 lskflekliklkeklgellkllmgkeeeeevlekleelkeqiealrevlsDper 202
lsk ++k i+ + k ++l + +ke+ +e+ +l e +iea++e++ ++
MMSYN1_0360 7 LSKRMQKSIEKNMKNSTLNEEN-IKETLKEIRLSLLEADVNIEAAKEIINNVKQ 59
4555666666555555554444.7777788888888888888888888877665 PP
== domain 2 score: 5.7 bits; conditional E-value: 0.006
TIGR00345 1 ffgGKGGVGKTtisaatairlaesgk.kvllvS 32
++ G G GKTt + +a l +++k kvllv
MMSYN1_0360 105 MMVGLQGSGKTTTANKLAYLLNKKNKkKVLLVG 137
5778889****************9761677765 PP
== domain 3 score: 6.2 bits; conditional E-value: 0.0044
TIGR00345 116 lkelkeaenefDvvifDtA 134
l++ k en+fDvvi+DtA
MMSYN1_0360 176 LQYAK--ENNFDVVILDTA 192
33333..388********9 PP
== domain 4 score: -1.7 bits; conditional E-value: 1.1
TIGR00345 188 eqiealrevlsDpertsfvlVvipeklslkE 218
+ + +++D +r v + + ++lkE
MMSYN1_0360 354 PINKVSESQIQDAQRKLAVFSILMDSMTLKE 384
2223334466666666666666666666666 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (447 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 492 (0.109626); expected 89.8 (0.02)
Passed bias filter: 191 (0.0425579); expected 89.8 (0.02)
Passed Vit filter: 38 (0.00846702); expected 4.5 (0.001)
Passed Fwd filter: 13 (0.00289661); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 13 [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.24
# Mc/sec: 2674.63
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0360 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0361 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0361.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0361/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0361 [L=155]
Description: rlmH 5=Equivalog rRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.3e-32 108.3 0.8 9.2e-32 108.1 0.8 1.0 1 TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltra
Domain annotation for each model (and alignments):
>> TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 108.1 0.8 2.1e-35 9.2e-32 2 154 .. 2 155 .] 1 155 [] 0.91
Alignments for each domain:
== domain 1 score: 108.1 bits; conditional E-value: 2.1e-35
TIGR00246 2 kinlvavGkkkekyvktGieeytkrlskdakielielpaekrgknldikrildkeGdrilaais...kakvvaldieGkpktteeladeleklktdGk 96
ki++++ Gk+ +k+ + +++y krl k+a ie+iel +e +g ++ +i++ + d +l ++ + + v ld++ k +te+l d ++ ++ +
MMSYN1_0361 2 KIKIICFGKLDKKFYIEAFNDYFKRLEKYADIEIIELKEEING---ELNKIKELNSDLLLNKLEsykDFEKVILDVNSKLISTENLVDLIQTNLNYKN 96
89***********************************887766...577777888888888775443677899*****************99888877 PP
TIGR00246 97 d.vtlliGGseGlsdevkaaaeeklslskltlphqlvrvivaeslyrafsittnepyhk 154
+ ++iG s+G s++ + ++k+sl+k+tlphql r++++e++yr f+i +ne yhk
MMSYN1_0361 97 AkILFVIGPSDGYSKKFLNFFNNKISLAKITLPHQLCRIVLIEQIYRVFKIIKNEKYHK 155
77********************************************************8 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (155 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 284 (0.0632799); expected 89.8 (0.02)
Passed bias filter: 117 (0.0260695); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1059.94
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0361 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0362 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0362.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0362/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0362 [L=92]
Description: ribosomal protein S16 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-31 105.7 0.1 2.5e-31 105.5 0.1 1.1 1 TIGR00002 S16: ribosomal protein bS16
Domain annotation for each model (and alignments):
>> TIGR00002 S16: ribosomal protein bS16
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 105.5 0.1 5.5e-35 2.5e-31 1 77 [. 2 76 .. 2 77 .. 0.98
Alignments for each domain:
== domain 1 score: 105.5 bits; conditional E-value: 5.5e-35
TIGR00002 1 vkirLarlGrkkrpvYrivvadsrskrdGkaieelGtynPvkkeeevkldverikewlkkGaqptetvkklLkkagv 77
vk+rL+r+G+k+ p+Yriv+adsr +r+G++ie +Gt+nP+k+e vk+d+e + +wl++Gaqpt+tv+ lL+k+g+
MMSYN1_0362 2 VKLRLKRIGKKQAPFYRIVAADSRINRNGQYIELVGTFNPLKDE--VKIDKELTLKWLNNGAQPTDTVRTLLSKQGI 76
8******************************************9..****************************998 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (92 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 89 (0.0198307); expected 89.8 (0.02)
Passed bias filter: 73 (0.0162656); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 733.98
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0362 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0363 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0363.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0363/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0363 [L=164]
Description: 16S_RimM: 16S rRNA processing protein RimM 5=Equivalog Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-20 70.2 9.8 7.8e-20 68.9 9.8 1.6 1 TIGR02273 16S_RimM: 16S rRNA processing protein RimM
Domain annotation for each model (and alignments):
>> TIGR02273 16S_RimM: 16S rRNA processing protein RimM
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 68.9 9.8 1.7e-23 7.8e-20 2 165 .. 6 162 .. 5 163 .. 0.91
Alignments for each domain:
== domain 1 score: 68.9 bits; conditional E-value: 1.7e-23
TIGR02273 2 llvGkilkahGikGevkvksltddp.eelfkykevlilkdsk.ewlevkvasvkkkknklivklegiddreeaeeLkglelfvereelpeleedeyyl 97
+ +G i++++ ikG+vkv+ d + ++l k +++i+++++ ++l v+ ++ +k+kn+livk+ + d+++++ ++k++e+++ +++ + +
MMSYN1_0363 6 IKIGVIVNTFSIKGQVKVILNDDIMiDDLNKIDTFFIKTNNNfQVLRVQNITLNKTKNQLIVKFLNLDNINDVIKYKNQEIYCLKDKNIS------QI 97
78*********************752778888888888888899999************************************9988774......38 PP
TIGR02273 98 tdLigleVvteegeelGkVkeiletgandvlvveskkgkkevliPfveeivkevdlekkkitvdepeg 165
Lig++ v+ + G +++ ++ + ++++ v+ ++++ke+ +P v+ ++ke+d ++k i++++ eg
MMSYN1_0363 98 ISLIGFKFVS--LKTNGIISDYMNNTYQQLVKVK-SENQKEFWVPLVDVFIKEIDYQNKVIIAKDVEG 162
9********5..3467******************.6899***********************999877 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (164 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 377 (0.0840018); expected 89.8 (0.02)
Passed bias filter: 72 (0.0160428); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1121.48
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0363 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0364 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0364.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0364/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0364 [L=240]
Description: trmD: tRNA (guanine(37)-N(1))-methyltransferase 5=Equivalog tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-91 303.8 0.6 1.7e-91 303.6 0.6 1.0 1 TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase
Domain annotation for each model (and alignments):
>> TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 303.6 0.6 3.8e-95 1.7e-91 1 224 [. 1 223 [. 1 231 [. 0.97
Alignments for each domain:
== domain 1 score: 303.6 bits; conditional E-value: 3.8e-95
TIGR00088 1 vkidvltLfpelikailessilkkalkknlvelevvnlRdfskdkhktvDdepyGGGaGmvlkaepiedalesvkaakkkvillspqgekldqelvke 98
+k++++tLfp++i++++e+si+k+a++k+ +++ev++lRdfs+ h++vDd+ yGGG+Gmvl+ ep++ a+esvk++++ v+l +pqg++l+q++vk+
MMSYN1_0364 1 MKFSIITLFPKIINSYIEESIIKRAINKQAIQIEVIDLRDFSTLSHNQVDDYQYGGGSGMVLMIEPLIRAIESVKTTNSIVLLTTPQGKTLNQSIVKK 98
8************************************************************************************************* PP
TIGR00088 99 Lakk.eklvlvcGrYeGiDeRvielevdeeisiGDfvLsgGelpaltlidsvvRlikGvlgkeaslieesfenglLdaPhytrpedlkglkvPevlls 195
a++ e+++++cG+YeG+DeR+++ ++d+eisiGD+v++gGel++l+l+ds++R+i+ v+ +e s+++esfen+lLd+P yt+p+++++ kvP+vlls
MMSYN1_0364 99 YANNdEHIIIICGHYEGYDERILD-YIDDEISIGDYVITGGELASLILVDSISRIIPNVIKQE-SHENESFENNLLDHPVYTKPYEFRNNKVPDVLLS 194
9986379*****************.***********************************999.********************************** PP
TIGR00088 196 GnhakikkwrleqslertklrRpdLykky 224
G+h++ikkwr eq+ +t ++RpdL
MMSYN1_0364 195 GHHQNIKKWREEQQVIKTLKKRPDLIDVN 223
*************************8755 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (240 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 226 (0.0503565); expected 89.8 (0.02)
Passed bias filter: 109 (0.024287); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1641.19
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0364 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0365 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0365.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0365/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0365 [L=127]
Description: rplS_bact: ribosomal protein L19 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-42 141.3 2.2 3.6e-42 141.1 2.2 1.1 1 TIGR01024 rplS_bact: ribosomal protein bL19
Domain annotation for each model (and alignments):
>> TIGR01024 rplS_bact: ribosomal protein bL19
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 141.1 2.2 8e-46 3.6e-42 11 113 .. 18 120 .. 8 121 .. 0.96
Alignments for each domain:
== domain 1 score: 141.1 bits; conditional E-value: 8e-46
TIGR01024 11 nqlkkelpefevGdtvrvavkiveGkkeRlqafeGvviakrgrGisetftvrkisegvgverifllyspkiesievvrrGkvrraklyYlRerkGkaa 108
nql+++l +f++Gdt+rv vki+eG+k R+q+feG+vi+++g+Gi+ +++vrk+s+gv ver+f+l+sp+i+s+ +++rGkvrr+++yY+R+ +Gkaa
MMSYN1_0365 18 NQLRNDLIDFRSGDTIRVDVKIKEGDKFRIQSFEGLVIKTQGSGITYSVVVRKMSNGVFVERTFPLHSPIIDSVTLIKRGKVRRSRIYYIRNLSGKAA 115
479*********************************************************************************************** PP
TIGR01024 109 kikek 113
+ike+
MMSYN1_0365 116 RIKEI 120
***97 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (127 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 163 (0.0363191); expected 89.8 (0.02)
Passed bias filter: 116 (0.0258467); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.18
# Mc/sec: 1013.21
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0365 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0366 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0366.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0366/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0366 [L=316]
Description: GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 5=Equivalog Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-94 313.8 5.7 2.6e-94 313.6 5.7 1.0 1 TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding prote
5.6e-18 63.1 2.6 5.6e-18 63.1 2.6 1.5 2 TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
1.4e-12 45.4 8.2 2.5e-12 44.6 8.2 1.4 1 TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
3.1e-11 41.3 3.8 2.7e-07 28.5 0.1 2.5 2 TIGR00231 small_GTP: small GTP-binding protein domain
1.6e-10 38.9 8.0 2.9e-09 34.8 0.1 3.0 3 TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding prote
1.7e-08 32.0 10.9 0.00021 18.5 0.6 2.4 2 TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
6.2e-08 30.3 10.8 3.1e-07 28.0 0.8 2.3 2 TIGR00436 era: GTP-binding protein Era
5.1e-07 26.7 1.1 6.7e-07 26.3 0.4 1.5 2 TIGR00437 feoB: ferrous iron transport protein B
1e-06 25.8 7.3 0.0011 15.8 2.8 2.1 2 TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation
3.6e-06 24.2 1.7 0.0047 13.9 0.0 2.2 2 TIGR02729 Obg_CgtA: Obg family GTPase CgtA
0.0015 15.5 2.7 0.013 12.4 0.2 2.2 2 TIGR03156 GTP_HflX: GTP-binding protein HflX
Domain annotation for each model (and alignments):
>> TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 313.6 5.7 6.3e-97 2.6e-94 1 276 [] 5 287 .. 5 287 .. 0.98
Alignments for each domain:
== domain 1 score: 313.6 bits; conditional E-value: 6.3e-97
TIGR03596 1 iqWfPGHmakakkeikeklklvDvvievlDARiplssknpeleelvknkprlivlnkaDladpektkkwlkyfe.ekgkkalavnakkkkkvkkilka 97
++WfPGHm+k+ k+i+ ++++vDvv+ev+D+R+p+sskn ++++l+k+kp++++++kaD+ad+++t++w++y+ ++++k++++ +++++ v+ +++
MMSYN1_0366 5 FNWFPGHMNKTLKDIEARIEMVDVVVEVIDSRAPYSSKNTTFKKLLKDKPIVYIFSKADIADSKITQQWVDYYVkNENSKVIVLYNRHTDIVNDLINV 102
69***********************************************************************979999******************* PP
TIGR03596 98 ikkllkekkeklkakglkkkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklskeleLlDtPGilwpkledeevglkLaltgaikd 195
i++l+++k+ek+kakg+k++ i+alv+GiPNvGKSt+iNr++k k +kvgnkpgvT++ q i+l+ ++LlDtPG+l++kle+e+v+++++++++ikd
MMSYN1_0366 103 INELTAKKREKDKAKGIKNTLINALVIGIPNVGKSTFINRVIKGKNVKVGNKPGVTRGIQLIHLNPFINLLDTPGVLPSKLESETVAVNICAINSIKD 200
************************************************************************************************** PP
TIGR03596 196 eildkeevalfllellkekypeelkerykleeeee......eeeelleeiakkrglllkggeldleraaeillkelrkgklgkisle 276
++++ke+va++l++++ ++y++ +++ yk++ + + + +++e+i+ +++++ +++ ld+er+ + +l++l+kgklgkis+e
MMSYN1_0366 201 NVFPKERVAAKLMSYVYNNYDDVIEKYYKINLKLQkpisviDSYKIFETIGIEKKWYVTEDILDMERILSSFLRDLEKGKLGKISFE 287
*******************************998878888888889***************************************98 PP
>> TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 63.1 2.6 1.4e-20 5.6e-18 69 233 .. 15 178 .. 9 199 .. 0.82
2 ? -2.4 0.0 1 4.2e+02 224 243 .. 243 262 .. 223 268 .. 0.84
Alignments for each domain:
== domain 1 score: 63.1 bits; conditional E-value: 1.4e-20
TIGR03594 69 ireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnkkeeae...aaefyslGlgevlaiSaehgrgikdLldeileelpee 163
+ +e+ ie+ dv++ v+d r+ +++++++ klL+ +kp++ + K+d ++++ + +++ ++v+++ h + ++dL++ i e ++
MMSYN1_0366 15 TLKDIEARIEMVDVVVEVIDSRAPYSSKNTTFKKLLK--DKPIVYIFSKADIADSKITqqwVDYYVKNENSKVIVLYNRHTDIVNDLINVINELTAKK 110
55778999***************************97..699*******998754433223556667788899999************9999888777 PP
TIGR03594 164 eeeeeee.eeeepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevkgkkylliDTAGi 233
+e+++++ +++ i+ +iG pNvGKSt++N++++ + v v + +G+Tr i++ + + + l+DT G+
MMSYN1_0366 111 REKDKAKgIKNTLINALVIGIPNVGKSTFINRVIKGKNVKVGNKPGVTRG---IQLIHLNPFINLLDTPGV 178
55544441557789999********************************6...566666777888888887 PP
== domain 2 score: -2.4 bits; conditional E-value: 1
TIGR03594 224 kylliDTAGirrkkkveekv 243
+y+++ T Gi +k v+e++
MMSYN1_0366 243 SYKIFETIGIEKKWYVTEDI 262
68999999999998888765 PP
>> TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.6 8.2 6.2e-15 2.5e-12 55 230 .. 13 193 .. 7 219 .. 0.68
Alignments for each domain:
== domain 1 score: 44.6 bits; conditional E-value: 6.2e-15
TIGR03597 55 lnllnslsekkalvvavvDifdle...gslikelkrfvkenkvllvvNKidllpksvklekikewlkkeakeeglk...pvdillvsakkkkglkell 146
+++l+ ++ + ++v vv ++d s + k+++k++++++++ K d+ +++++ + ++k+e ++ + ++di+ + ++el+
MMSYN1_0366 13 NKTLKDIEARIEMVDVVVEVIDSRapySSKNTTFKKLLKDKPIVYIFSKADIADSKITQQWVDYYVKNENSKVIVLynrHTDIVND---LINVINELT 107
5677777777666666667776651116778899******************9999998888888877665543321223333321...222222222 PP
TIGR03597 147 el......ikkare.kkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesvllDtpGiineeqianllskkdl 230
++ k ++ +++v+G NVGKS++iN+++k ++ + + + pg T + i+l+ llDtpG++ ++ ++++ +
MMSYN1_0366 108 AKkrekdkAKGIKNtLINALVIGIPNVGKSTFINRVIKGKN-----VKVGNKPGVTRGIQLIHLNPFINLLDTPGVLPSKLESETVAVNIC 193
22100000222222223789*****************6665.....67889*************************998877777665544 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.2 0.8 3.2e-05 0.013 61 134 .. 9 75 .. 8 105 .. 0.79
2 ! 28.5 0.1 6.5e-10 2.7e-07 4 62 .. 124 177 .. 121 203 .. 0.87
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 3.2e-05
TIGR00231 61 aGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.dlktkvks 134
+G++ + +++ e+ +e+vd+v+ v+d + + ++ ++++ +k ++pi+ ++K D+ d ++ ++ +
MMSYN1_0366 9 PGHMNK------TLKDIEARIEMVDVVVEVIDSRAPYSSKNTTFKKLLK--DKPIVYIFSKADIADsKITQQWVD 75
666666......78889999*****************999999****99..*************99654444444 PP
== domain 2 score: 28.5 bits; conditional E-value: 6.5e-10
TIGR00231 4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaG 62
i+ +++G ++vGKst +n+ +k k +++ kpgvtr + i ++ +nllDT+G
MMSYN1_0366 124 INALVIGIPNVGKSTFINRVIKGKNVKVGNKPGVTRGIQL--IHLNP---FINLLDTPG 177
6789********************************9976..9****...69******* PP
>> TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.0 0.6 0.0025 1 98 152 .. 23 75 .. 10 104 .. 0.75
2 ! 34.8 0.1 7.1e-12 2.9e-09 15 74 .. 120 178 .. 106 190 .. 0.87
3 ? 0.5 0.1 0.25 1e+02 77 112 .. 210 245 .. 209 271 .. 0.84
Alignments for each domain:
== domain 1 score: 7.0 bits; conditional E-value: 0.0025
TIGR03598 98 renLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalk 152
e + vv ++D+r +++++++++ +llk++ p++ +++KaD +++ +++ ++
MMSYN1_0366 23 IEMVDVVVEVIDSRAPYSSKNTTFKKLLKDK--PIVYIFSKADIADSKITQQWVD 75
456678899******************9865..778899****777666555444 PP
== domain 2 score: 34.8 bits; conditional E-value: 7.1e-12
TIGR03598 15 edklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevneelrlvDlPGY 74
+++l++ ++G NvGKS++iN +++ k +++ ++PG T+ i + ++n + l D PG
MMSYN1_0366 120 KNTLINALVIGIPNVGKSTFINRVIKGK-NVKVGNKPGVTRGIQLIHLNPFINLLDTPGV 178
5666777789***************999.78****************************6 PP
== domain 3 score: 0.5 bits; conditional E-value: 0.25
TIGR03598 77 akvskeekekwqklieeYLekrenLkgvvllvDirh 112
ak + + +++ ++ie+Y + +L++ + ++D+ +
MMSYN1_0366 210 AKLMSYVYNNYDDVIEKYYKINLKLQKPISVIDSYK 245
566666778999********************9865 PP
>> TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.7 5.5 1.8e-06 0.00073 285 376 .. 22 116 .. 13 126 .. 0.82
2 ! 18.5 0.6 5.1e-07 0.00021 212 277 .. 126 188 .. 112 262 .. 0.87
Alignments for each domain:
== domain 1 score: 16.7 bits; conditional E-value: 1.8e-06
TIGR00450 285 aikeadlvlyvlDaskpltkddeliitlkkkkkdlllvlNKiDLa....eleilkselkltvsllsakqlkikelvdlltekinalyskekdeldl 376
i+ d+v+ v+D + p +++ +++l k+k+++ ++ K+D+a +++ ++k++ s++++ ++v++l++ in+l k++++ +
MMSYN1_0366 22 RIEMVDVVVEVIDSRAPYSSKNTTFKKL-LKDKPIVYIFSKADIAdskiTQQWVDYYVKNENSKVIVLYNRHTDIVNDLINVINELTAKKREKDKA 116
58899*************8777666665.5689************7666666667789999999***********************997765444 PP
== domain 2 score: 18.5 bits; conditional E-value: 5.1e-07
TIGR00450 212 laivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEkl 277
++G +NvGKS +N ++k V + +G tR + + ++l+ +++llDt G+ ++ + E +
MMSYN1_0366 126 ALVIGIPNVGKSTFINRVIKGKNVKVGNKPGVTRGI--QLIHLNP-FINLLDTPGVLPSKLESETV 188
4579******************************98..5677775.79*******97776665555 PP
>> TIGR00436 era: GTP-binding protein Era
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 6.6 3.4 0.0025 1 70 154 .. 16 99 .. 11 116 .. 0.68
2 ! 28.0 0.8 7.5e-10 3.1e-07 5 69 .. 128 189 .. 124 202 .. 0.79
Alignments for each domain:
== domain 1 score: 6.6 bits; conditional E-value: 0.0025
TIGR00436 70 vkeirkalsevdlilfvvdsdeknkedellleklqklkapvvlalnkldnkekdkllelidkeasllefkeiveisalkgenvee 154
k+i+ ++ vd+++ v+ds + + + + +kl k +p+v + k d + + + +d + + +++k iv + + ++
MMSYN1_0366 16 LKDIEARIEMVDVVVEVIDSRAPYSSKNTTFKKLLKD-KPIVYIFSKADIADSKITQQWVDYYVKNENSKVIVLYNRHTDIVNDL 99
4889999*****************9977777777654.46666777777766666666677777777776555555444443333 PP
== domain 2 score: 28.0 bits; conditional E-value: 7.5e-10
TIGR00436 5 ilGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlhekkhklnell 69
++G pnvGKST++N++++ k+ v +k+ Tr i+ i+ ++ i ++DtPG+ +k +++++
MMSYN1_0366 128 VIGIPNVGKSTFINRVIKGKNVKVGNKPGVTRG-IQLIHLNPF--INLLDTPGVLPSKLESETVA 189
9******************************94.666666654..789*****999987776653 PP
>> TIGR00437 feoB: ferrous iron transport protein B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.6 0.0 1.9 7.6e+02 71 83 .. 24 36 .. 20 68 .. 0.69
2 ! 26.3 0.4 1.6e-09 6.7e-07 1 52 [. 130 179 .. 130 198 .. 0.83
Alignments for each domain:
== domain 1 score: -3.6 bits; conditional E-value: 1.9
TIGR00437 71 ekadLvvnvvdas 83
e +d+vv+v+d+
MMSYN1_0366 24 EMVDVVVEVIDSR 36
4567777777764 PP
== domain 2 score: 26.3 bits; conditional E-value: 1.6e-09
TIGR00437 1 GnpNvGKstlfna.LtgsnqkvgNwpGvTVekkegklelkgedieivDlPGiY 52
G pNvGKst++n+ + g+n+kvgN pGvT ++ l + + i++ D+PG+
MMSYN1_0366 130 GIPNVGKSTFINRvIKGKNVKVGNKPGVTRGIQ---LIHLNPFINLLDTPGVL 179
77**********94579************7765...5555599********84 PP
>> TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.8 2.8 2.8e-06 0.0011 81 174 .. 20 114 .. 12 129 .. 0.71
2 ! 12.5 0.3 2.7e-05 0.011 12 66 .. 128 178 .. 117 182 .. 0.84
Alignments for each domain:
== domain 1 score: 15.8 bits; conditional E-value: 2.8e-06
TIGR03918 81 revlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke...keklekkkeeevvlvsakekegieelkealiellpeeaeek 174
++ +e +d+++ v+d++a +++++++ + lk+k p++++++k+d+++++ + + + k+++++v+++ +++++ +++l + + el+ ++ e++
MMSYN1_0366 20 EARIEMVDVVVEVIDSRAPYSSKNTTFKKLLKDK--PIVYIFSKADIADSKITqqwVDYYVKNENSKVIVLYNRHTDIVNDLINVINELTAKKREKD 114
567899***********65555555555555444..99********998765534456667788888888888888889999999998876665433 PP
== domain 2 score: 12.5 bits; conditional E-value: 2.7e-05
TIGR03918 12 lfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGp.vvliDTaGl 66
++G N+GKS++iN +++ + v + pG T + + l +l p + l+DT+G+
MMSYN1_0366 128 VIGIPNVGKSTFINRVIKGKNVKVGNKPGVT-----RGIQLIHLNPfINLLDTPGV 178
7899*************999999******66.....67777777774679999996 PP
>> TIGR02729 Obg_CgtA: Obg family GTPase CgtA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.5 0.5 0.00025 0.1 264 326 .. 43 105 .. 13 108 .. 0.84
2 ! 13.9 0.0 1.1e-05 0.0047 160 191 .. 126 158 .. 112 236 .. 0.83
Alignments for each domain:
== domain 1 score: 9.5 bits; conditional E-value: 0.00025
TIGR02729 264 LkkyseeLaekpelvvlnkidlleeeeleellkelkeelekkvlaisaltkegleellkklle 326
+++++ L++kp + +++k+d+ +++ +++ ++ ++ ++kv+ + +++ +++l++ + e
MMSYN1_0366 43 NTTFKKLLKDKPIVYIFSKADIADSKITQQWVDYYVKNENSKVIVLYNRHTDIVNDLINVINE 105
5689999*****************************999999999999888888888887765 PP
== domain 2 score: 13.9 bits; conditional E-value: 1.1e-05
TIGR02729 160 vglvGlpnaGkStllsavsaak.pkiadYpFtT 191
++G+pn+GkSt++++v + k k+++ p T
MMSYN1_0366 126 ALVIGIPNVGKSTFINRVIKGKnVKVGNKPGVT 158
5689************99887626888776555 PP
>> TIGR03156 GTP_HflX: GTP-binding protein HflX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.9 0.4 0.012 4.9 267 347 .. 24 103 .. 9 107 .. 0.63
2 ! 12.4 0.2 3.2e-05 0.013 170 213 .. 103 147 .. 89 158 .. 0.75
Alignments for each domain:
== domain 1 score: 3.9 bits; conditional E-value: 0.012
TIGR03156 267 aeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkle....eeeleeleekk.eeavlvsAkkgegleeLleai 347
+ d++++v+D+ + +++ ++ +++L+ ++p+++++ k+d ++ ++ ++ +++ ++ +++ ++ + +++L + i
MMSYN1_0366 24 EMVDVVVEVIDSRAPY-SSKNTTFKKLLK-----DKPIVYIFSKADIADskitQQWVDYYVKNEnSKVIVLYNRHTDIVNDLINVI 103
5679999999976665.555667777775.....799*********9994443233333333331444444555555555666655 PP
== domain 2 score: 12.4 bits; conditional E-value: 3.2e-05
TIGR03156 170 lekv.ekqreeqrkkrkksevptvalvGYTNaGKstllnaltkae 213
++++ +k+re+ ++k k+++++ ++G N GKst++n+++k +
MMSYN1_0366 103 INELtAKKREKDKAKGIKNTLINALVIGIPNVGKSTFINRVIKGK 147
444414667777778888889999999*************98754 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (316 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 354 (0.078877); expected 89.8 (0.02)
Passed bias filter: 137 (0.0305258); expected 89.8 (0.02)
Passed Vit filter: 22 (0.00490196); expected 4.5 (0.001)
Passed Fwd filter: 11 (0.00245098); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 11 [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 1890.79
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0366 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0371 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0371.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0371/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0371 [L=623]
Description: ABC transporter, ATP-binding protein 2=Generic Efflux
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-102 342.5 1.4 1.4e-102 342.2 1.4 1.0 1 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
5.7e-98 326.8 4.2 6.8e-98 326.5 4.2 1.0 1 TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding p
9.3e-88 293.2 4.7 1.1e-87 292.9 4.7 1.0 1 TIGR00958 3a01208: antigen peptide transporter 2
1e-82 276.5 10.1 1.3e-82 276.1 10.1 1.0 1 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
8.3e-82 273.4 4.9 1e-81 273.1 4.9 1.0 1 TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC trans
2.6e-77 258.6 7.8 3.5e-77 258.2 7.8 1.1 1 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
2.3e-70 235.9 6.8 3.1e-70 235.4 6.8 1.0 1 TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC trans
1.1e-67 227.2 0.3 1.4e-67 226.8 0.3 1.1 1 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
6.6e-66 221.2 23.6 8e-66 220.9 23.6 1.0 1 TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
5.3e-60 201.6 6.8 7.2e-60 201.1 6.8 1.1 1 TIGR01192 chvA: glucan exporter ATP-binding protein
2.1e-55 186.3 0.0 2.7e-55 185.9 0.0 1.1 1 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
7.5e-55 184.4 6.6 9.5e-55 184.1 6.6 1.0 1 TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
2.8e-34 115.8 20.0 7.8e-33 111.0 20.1 1.9 1 TIGR00957 MRP_assoc_pro: multi drug resistance-associated pr
1.3e-32 111.3 0.1 3.9e-32 109.7 0.1 1.7 1 TIGR04520 ECF_ATPase_1: energy-coupling factor transporter A
2.4e-29 100.3 0.0 3.8e-29 99.6 0.0 1.3 1 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
1.6e-28 97.7 0.0 3.1e-28 96.7 0.0 1.4 1 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
1.7e-28 97.7 0.4 3.5e-28 96.7 0.1 1.6 2 TIGR01186 proV: glycine betaine/L-proline transport ATP bind
3.1e-26 90.1 0.0 5.7e-26 89.2 0.0 1.5 1 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
8.1e-24 82.0 12.1 1.4e-23 81.2 12.1 1.3 1 TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
1.8e-23 80.0 16.6 2.3e-23 79.6 12.0 2.2 1 TIGR01271 CFTR_protein: cystic fibrosis transmembrane conduc
5.1e-23 79.8 0.0 1.2e-22 78.6 0.0 1.5 1 TIGR02673 FtsE: cell division ATP-binding protein FtsE
2.9e-22 77.1 0.0 1.1e-21 75.3 0.0 1.8 2 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
3.4e-22 77.1 0.3 1.8e-21 74.7 0.3 2.0 1 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
6.5e-22 76.1 0.0 1.4e-21 75.0 0.0 1.5 1 TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit,
1.2e-21 75.3 0.0 5.2e-12 43.8 0.0 2.2 2 TIGR02769 nickel_nikE: nickel import ATP-binding protein Nik
1.3e-21 75.2 0.1 5.7e-21 73.1 0.0 2.0 2 TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding pr
7.3e-21 72.6 0.6 5.3e-20 69.8 0.1 2.4 1 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
1.2e-20 71.8 0.0 3e-20 70.5 0.0 1.6 1 TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-bindin
3.4e-20 70.3 0.0 5.6e-20 69.6 0.0 1.3 1 TIGR01187 potA: polyamine ABC transporter, ATP-binding prote
1.6e-19 68.1 0.1 3.3e-19 67.1 0.1 1.5 1 TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-bi
1.7e-19 68.2 0.1 3.6e-19 67.1 0.0 1.6 1 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
2.5e-19 67.7 0.0 4e-19 67.0 0.0 1.2 1 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
2.9e-19 67.3 0.0 6.6e-19 66.1 0.0 1.6 1 TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system
7.2e-19 66.3 0.4 1.9e-18 64.9 0.4 1.7 1 TIGR03740 galliderm_ABC: lantibiotic protection ABC transpor
1.9e-18 64.8 0.0 2e-09 35.2 0.0 2.3 2 TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-bi
1.7e-17 61.6 0.3 5.5e-17 60.0 0.3 1.7 1 TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP
3.9e-17 60.3 0.0 1.4e-16 58.5 0.0 1.8 1 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
5.2e-17 60.1 0.0 9.4e-17 59.2 0.0 1.3 1 TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transp
1.1e-16 59.1 0.1 1.1e-16 59.1 0.1 1.6 1 TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC tran
4.8e-16 56.4 0.0 4.8e-16 56.4 0.0 2.2 1 TIGR00955 3a01204: pigment precursor permease
6.1e-16 56.5 0.1 1.3e-07 29.3 0.1 2.2 2 TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein
7.9e-16 56.4 0.0 1.6e-15 55.4 0.0 1.4 1 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
1.1e-15 55.8 0.0 2.6e-15 54.6 0.0 1.6 1 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
1.2e-15 55.1 0.5 3.1e-15 53.7 0.1 1.8 1 TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system
1.2e-15 55.0 0.1 1.2e-15 55.0 0.1 2.3 2 TIGR00954 3a01203: peroxysomal long chain fatty acyl transpo
3.2e-15 54.3 0.0 6.5e-15 53.3 0.0 1.5 1 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
4.2e-15 53.6 0.0 1.7e-10 38.5 0.1 2.3 2 TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transport
1.3e-14 52.4 0.6 1.8e-13 48.5 0.5 2.4 1 TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding protei
1.6e-14 51.8 0.0 8.7e-14 49.3 0.0 1.9 1 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
1.7e-14 51.5 0.1 1.6e-13 48.3 0.1 2.0 1 TIGR01288 nodI: nodulation ABC transporter NodI
6.5e-14 49.6 1.2 1.6e-11 41.7 0.1 3.0 4 TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-bindi
3.3e-13 47.6 0.0 5.6e-07 27.2 0.1 2.2 2 TIGR01978 sufC: FeS assembly ATPase SufC
6.8e-13 46.8 0.4 7.9e-12 43.3 0.0 2.4 1 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
1.6e-12 44.7 0.0 7.9e-07 26.0 0.0 2.2 2 TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD f
7.4e-11 39.1 0.1 1.2e-07 28.5 0.1 2.2 2 TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protei
8.4e-10 34.8 0.0 8.4e-10 34.8 0.0 1.7 1 TIGR00956 3a01205: pleiotropic drug resistance family protei
1.2e-07 26.9 0.0 2e-07 26.2 0.0 1.2 1 TIGR01257 rim_protein: rim ABC transporter
9.1e-07 26.6 0.2 2.6e-05 21.8 0.1 2.6 2 TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein
1.7e-06 24.4 0.1 3.3e-06 23.5 0.1 1.3 1 TIGR00630 uvra: excinuclease ABC subunit A
0.0047 15.4 0.0 0.0099 14.4 0.0 1.4 1 TIGR03696 Rhs_assc_core: RHS repeat-associated core domain
------ inclusion threshold ------
0.011 13.7 0.0 0.02 12.8 0.0 1.4 1 TIGR03499 FlhF: flagellar biosynthesis protein FlhF
Domain annotation for each model (and alignments):
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 342.2 1.4 1.9e-104 1.4e-102 7 571 .. 35 613 .. 30 618 .. 0.83
Alignments for each domain:
== domain 1 score: 342.2 bits; conditional E-value: 1.9e-104
TIGR02204 7 aallpfvkryrarvlaalvaLviaaavtLslplavrkl...id.....eGfskeesellneafalllvvvlvlalatalrfylvsslGervvadlrka 96
+++++++k ++ +++ l++ +++a+ + pl +++l ++ + fs++ + ++a+ +v+ ++ a+ t + + lG ++ lr++
MMSYN1_0371 35 NVIWKHMKINKKWAIGLLITAIFSALFAALNPLLMQQLqfaVEfekthQNFSNSWGLSWKVILAIWIVILVITAILTYIANLFGNELGKKIEISLRNE 132
6678888777766666666666555544333333333211022101113444444444555677778888889999999999999************* PP
TIGR02204 97 vfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfg.rrvrklsresqdrl 193
+ +l++ + ++ ++++ge+l+++ +dt+++ i + ++++ +l+ l+it+ +l +++ l+ ++ ++ +rkl + + +
MMSYN1_0371 133 LTRKLITTDIHYYSNKKTGEILTKVVSDTQIIGMQASVIPNIIFTAFFTMVFTLITLFITTSLYIGLFFISLFLMFGILFGLSfLPMRKLVFNLRKII 230
*****************************9876665555567788888899999999999888888888888777766665552469*********** PP
TIGR02204 194 adasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvlagklsa..GeLaqfvlyavlvag 289
d+++ +++ ++ ik ++a ++ee+e++rf + + y+ ++ ++++i+ ++++++ +v +++ + a + ++++++ L+ +++ a + g
MMSYN1_0371 231 TDINGDVTDRINTIKLIKANGTEEYEKTRFVQIHDVYYKKYKQISYFQSVMIS-ILFFAINTVQILMTLIALWLYKNDITTlkTILGPMLICAGMLIG 327
******************************87655555555555555666665.67778888888776667777777776522458999999999888 PP
TIGR02204 290 slgalsevlgelqraaGaaerliellkaksdikaPaqpka..lpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllel 385
+ +l + + +a+ +a+r+ e+ +a++ i++ + +k+ +k++g++ f++v+f+yP++p++ l +++l++++G+ a+vG +GaGkst+ +l
MMSYN1_0371 328 PIMQLLRAIIGMVQASTSAQRIDEITDATQLINNHSLDKKgiRIHKIEGNLVFKNVNFSYPDKPENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKL 425
88887776666777999***************99877665224689**************************************************** PP
TIGR02204 386 llrfydPqsGaill.dGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqk 482
llrfydP+sG++l+ d ++++++ +++ v+qd++++ + v++n+ry +p a+dee++ a+k+ae ++++++ pe y+t lGerg LsGGqk
MMSYN1_0371 426 LLRFYDPTSGEVLInDNINIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNLRYVKPSATDEEIILACKKAELHDLVTTWPEQYNTILGERGFILSGGQK 523
************99678******999999********************************************************************* PP
TIGR02204 483 qriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvld.kGriveqGthaeLiakggLyarl 571
qr+ iar lk+ iL+LdeatsaLd e+ +q leelm+grt + iahrL+t+++ d+i+vl k i+++Gt +eL++k g ++ l
MMSYN1_0371 524 QRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIAHRLSTIRNVDQIIVLApKKGIIQIGTFKELVKKPGEFKDL 613
****************************************************************9735569***********99877766 PP
>> TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 326.5 4.2 9.3e-100 6.8e-98 10 571 .. 45 619 .. 37 620 .. 0.90
Alignments for each domain:
== domain 1 score: 326.5 bits; conditional E-value: 9.3e-100
TIGR02203 10 rpykallvlalvalvlvaatesllaallkplld..egfse.lekeevllavPllv.vglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlps 103
+++ ++l+++++ +l+aa ++ll++ l+ ++ ++ ++ ++ + + v l++ ++++v+ i +++++++ +k+ +lR++l kl+t
MMSYN1_0371 45 KKWAIGLLITAIFSALFAALNPLLMQQLQFAVEfeKTHQNfSNSWGLSWKVILAIwIVILVITAILTYIANLFGNELGKKIEISLRNELTRKLITTDI 142
566788999999999999999999999887765222333322345566777776647788999*********************************** PP
TIGR02203 104 ayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivlly.lsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveea 200
y+ ++++g++l+++++d++ + +a+ + ++ +t+++ li l+ +s + l + l+ + ++l +rk+ + ++ i++++ v +
MMSYN1_0371 143 HYYSNKKTGEILTKVVSDTQIIGMQASVIPNIIFTAFFTMVFTLITLFItTSLYIGLFFISLFLMFGILFGLSFLPMRKLVFNLRKIITDINGDVTDR 240
******************9888888877777777777887777777665278999******************************************* PP
TIGR02203 201 lqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelva.fitamlalikplksLtnvsak 297
++ + +k g++e+e+ Rf ++ + ++ +++ +s++ +++ + + ++ lial+ +++ +t ++ + +++ + +li p+ +L +
MMSYN1_0371 241 INTIKLIKANGTEEYEKTRFVQIHDVYYKKYKQISYFQSVMISILFFAINTVQILMTLIALWLYKNDITTLKTILGpMLICAGMLIGPIMQLLRAIIG 338
*****************************************99998888877777789**************9997356788999******9999999 PP
TIGR02203 298 lqkglaaaesvfallDspp.....ekdeGtralervrGkvefrnvtfrypgddrea.ldsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGe 389
+ + ++a+++ ++ D ++ d+ +++++G++ f+nv+f yp++ ++ l +++l++e+G+ a+vG+ G+Gkst+ +ll RFy+p+sGe
MMSYN1_0371 339 MVQASTSAQRIDEITDATQlinnhSLDKKGIRIHKIEGNLVFKNVNFSYPDKPENViLPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGE 436
999999*****99999765222225688888999****************997665389*************************************** PP
TIGR02203 390 ill.DgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRall 486
+l+ D+++++d+ L s +++ +v qd + +t+++n++Y + +++++e+ a ++a l+dlv + pe +t +Ge+g LsGGq+qRl iaR +l
MMSYN1_0371 437 VLInDNINIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNLRYVKP-SATDEEIILACKKAELHDLVTTWPEQYNTILGERGFILSGGQKQRLVIARMFL 533
*996779************************************9.788899999******************************************** PP
TIGR02203 487 kdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGk.iverGtheeLlarnGlYasLhkiqfk 571
k+ iLiLDeatsaLDn e+++qa Le+lm+gRt++ iahRLsti++ D+i+vl k i+ Gt +eL+++ G + L++ +f+
MMSYN1_0371 534 KNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIAHRLSTIRNVDQIIVLAPKKgIIQIGTFKELVKKPGEFKDLYEAGFS 619
*******************************************************865549********************98875 PP
>> TIGR00958 3a01208: antigen peptide transporter 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 292.9 4.7 1.5e-89 1.1e-87 149 710 .. 34 613 .. 4 614 .. 0.77
Alignments for each domain:
== domain 1 score: 292.9 bits; conditional E-value: 1.5e-89
TIGR00958 149 llrLLkllkrdlkllllalvllvlsvlgevliPkytgrvidtllqdksvealaka.....iflltllsla...SsllaglrgGsfeyamarinlrire 238
+ + k +k ++k+ + l+ ++s+l l P ++ ++ +k+ ++++++ ++l++ + ++l+ + + + + ++i+ +r+
MMSYN1_0371 34 INVIWKHMKINKKWAIGLLITAIFSALFAALNPLLMQQLQFAVEFEKTHQNFSNSwglswKVILAIWIVIlviTAILTYIANLFGNELGKKIEISLRN 131
5555566666666666666666666666666666666666666666666666654221111122222221000222222222223445679******* PP
TIGR00958 239 dlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrn.lvkllgllifmlslSprLtl..vtllalPlvllaekvfgkvyqklseevq 333
+l ++l+ di ++ ++ktGe+ ++ sDt+ + s n++ + +++++l+++ ++ S ++ l ++l+ + +l+ + + +kl +++
MMSYN1_0371 132 ELTRKLITTDIHYYSNKKTGEILTKVVSDTQIIGMQASVIPNIIFTAfFTMVFTLITLFITTSLYIGLffISLFLMFGILFGLSFL--PMRKLVFNLR 227
**********************************9999999976555168899999999999998654114554444444443333..35788999** PP
TIGR00958 334 eavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvl.egkvss.gnLv.sFlLYql 428
+ ++ n + + + +++ ++ ++Ee+E +rf + + +k k++ y + ++++ l+ + +v +L+ l l ++++++ ++ l+
MMSYN1_0371 228 KIITDINGDVTDRINTIKLIKANGTEEYEKTRFVQIHDVY--YKKYKQISYFQSVMISILFFAINTVQILMTLIALWLyKNDITTlKTILgPMLICAG 323
*********************************8753332..23445566666666666655555555555444443213333321333313455555 PP
TIGR00958 429 qlgeavreLsevysellkavGasekvFeyldRkPqlelsgt....lapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKSt 522
l + +L+ ++++a +++++ e +d + ++++ + +++eG++ F++V+FsYP +p++ +l + ++ le G++ a VG G GKSt
MMSYN1_0371 324 MLIGPIMQLLRAIIGMVQASTSAQRIDEITDATQLINNHSLdkkgIRIHKIEGNLVFKNVNFSYPDKPENVILPNFNLVLEKGKSYAFVGQTGAGKST 421
5556677777778899***************9988877654111145679************************************************ PP
TIGR00958 523 vaallenlYqPtgGqvll.DgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqls 619
+ ll ++Y+Pt+G+vl+ D+ ++k++ ++ ++++ V+q+P + g+v +N+ Y +++dee+ a k+a hd ++ +++y+t +ge+G ls
MMSYN1_0371 422 ISKLLLRFYDPTSGEVLInDNINIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNLRYVKPSATDEEIILACKKAELHDLVTTWPEQYNTILGERGFILS 519
*****************97889**************************************************************************** PP
TIGR00958 620 gGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkg.svvelGthkqLmekedvykql 710
gGqkqr+ iAR +++P +LiLDeAtSALD ve+ +q+ + +++rt + iahrLst++++d+i+vl + + Gt+k+L++k++ +k l
MMSYN1_0371 520 GGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAklEELMQGRTSITIAHRLSTIRNVDQIIVLAPKkGIIQIGTFKELVKKPGEFKDL 613
***********************************99997667789***********************866479999*********9988876 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 276.1 10.1 1.8e-84 1.3e-82 124 690 .. 33 615 .. 14 618 .. 0.83
Alignments for each domain:
== domain 1 score: 276.1 bits; conditional E-value: 1.8e-84
TIGR01846 124 kfglsWfipavlryrkllrevllislllqllalvsPllfevvidkvlv...hrgls.....tlsvlalallavavaevalsllrtylfahltsridve 213
+ ++ W ++ ++k + +l+ +++ l+a + Pll++++ v h+ +s + +v+ +++ v+ +l+++ + +l ++i++
MMSYN1_0371 33 FINVIWKHMKI--NKKWAIGLLITAIFSALFAALNPLLMQQLQFAVEFektHQNFSnswglSWKVILAIWIVILVITAILTYIANLFGNELGKKIEIS 128
33333333222..455667899999*************998866554311144444222223345544455566667889***9999999******** PP
TIGR01846 214 lgaklyrhllalPlsyfesrrvGdtvarvreleqirefltgsaltvvldllfvvvflavmffyspkl.tlvvlvslviylllsvivsp.ilrkrvedk 309
l l r l++ + y++++++G+++++v qi + ++ ++ +f++vf + +f ++ l +++ +sl + + + + +s +rk v +
MMSYN1_0371 129 LRNELTRKLITTDIHYYSNKKTGEILTKVVSDTQIIGMQASVIPNIIFTAFFTMVFTLITLFITTSLyIGLFFISLFLMFGILFGLSFlPMRKLVFNL 226
***********************************99988888899999*******888777776662567788887766666666642689999999 PP
TIGR01846 310 feksaeaqsflvesvtgietikasavep....qfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvGqlvafnml 403
+ ++ + +++ + +i+ ika +e+ +f ++ + +y + s+ + + + ai+ +q l +++ lw+ + + + + +G ++ +
MMSYN1_0371 227 RKIITDINGDVTDRINTIKLIKANGTEEyektRFVQIHDVYYKKYKQISYFQSVMISILFFAINTVQILMTLIALWLYKNDITTLKTILGPML---IC 321
8999999*******************97222245555555667777788888888889999****************9998888888888655...56 PP
TIGR01846 404 agrvsqPvlrlaqlWqdfqqvkialerlGdildsPteass....agkaalpelkGaiefenirfryked.spevlsnlsldikaGeviGivGpsGsGk 496
ag + +P+++l ++ q+ + +r+ +i d + ++ + + + +++G++ f+n++f y + + ++l n++l +++G++ vG++G+Gk
MMSYN1_0371 322 AGMLIGPIMQLLRAIIGMVQASTSAQRIDEITDATQLINNhsldKKGIRIHKIEGNLVFKNVNFSYPDKpENVILPNFNLVLEKGKSYAFVGQTGAGK 419
899999*************************99876433311224557899***************6541456899********************** PP
TIGR01846 497 stltkllqrlyvPekGrvlv.dgvdlalad.PawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGa 592
st++kll r+y P G+vl+ d+ ++ + P+ l ++g v q+ ++ +++ dn++ kP++ +e++i a k a hd++++ ++ y+t +ge+G
MMSYN1_0371 420 STISKLLLRFYDPTSGEVLInDNINIKDVFlPSYL-NHIGYVEQDPSVLLGTVFDNLRYVKPSATDEEIILACKKAELHDLVTTWPEQYNTILGERGF 516
********************344555544336666.68*******99999************************************************ PP
TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvle.kGkivesGkheellakeglyakly 689
lsGGq+qr+ +ar +++nP ilildeatsald e+ i+ +l+e+ +grt i+iahrlst+r++d+i+vl k i++ G+++el++k g + +ly
MMSYN1_0371 517 ILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIAHRLSTIRNVDQIIVLApKKGIIQIGTFKELVKKPGEFKDLY 614
***********************************************************************963555999*****************9 PP
TIGR01846 690 q 690
+
MMSYN1_0371 615 E 615
7 PP
>> TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 273.1 4.9 1.4e-83 1e-81 138 708 .. 30 613 .. 13 615 .. 0.81
Alignments for each domain:
== domain 1 score: 273.1 bits; conditional E-value: 1.4e-83
TIGR03796 138 kpsllrallkrlkgsegallllvla....glllvlpglvvpafs.kifvDeilveeaqew...lrplllgllltallqvvltllqlallrrleiklav 227
++s++++++k++k +++ + l+++ +l++ l l++ ++ + ++ + ++w +++l++ ++ ++++++lt + + + ++l +k+ +
MMSYN1_0371 30 RKSFINVIWKHMKINKKWAIGLLITaifsALFAALNPLLMQQLQfAVEFEKTHQNFSNSWglsWKVILAIWIVILVITAILTYIANLFGNELGKKIEI 127
34667777777776665444444440000455555555554443123345555555677733336788888889999********************* PP
TIGR03796 228 assarflwhilrlPveffaqRaageiasRvqlndkvaellsgqlattvldlvlvvfyalvmlly..dlvlaliaialaainvlalqlvsrkrvdanrr 323
+ +++ ++++ +++++++++gei ++v ++ ++ + + + + ++ ++ ++++l++l +l ++l i+l ++ +++ l+ ++ +
MMSYN1_0371 128 SLRNELTRKLITTDIHYYSNKKTGEILTKVVSDTQIIGMQASVIPNIIFTAFFTMVFTLITLFIttSLYIGLFFISLFLMFGILFGLSFLPMRKLVFN 225
********************************************999999888888777766551155667777777777777777777888888999 PP
TIGR03796 324 lqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilv.vgglrvlegelti.Gmlvafqsll 419
l++ + ++g + +++i+ +kA g+e+ +r+ ++ ++ +++ + ++ l+ +++++ il+ + +l + + ++t +++ +
MMSYN1_0371 226 LRKIITDINGDVTDRINTIKLIKANGTEEYEKTRFVQIHDVYYKKYKQISYFQSVMI--SILFFAINTVQILMtLIALWLYKNDITTlKTILGPMLIC 321
9999999*********************99999998888888877777776665543..334445555544431334445555555414444444443 PP
TIGR03796 420 .asflepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgysal.eapliedfslslkpGqrvAlvGgsG 515
+ p+ +l+ ++ + + ++ +r+d+++++++ ++++ +++ + +k++G++ ++nv+f+y e+ ++ +f+l l++G+ A+vG+ G
MMSYN1_0371 322 aGMLIGPIMQLLRAIIGMVQASTSAQRIDEITDATQLINNHS---LDKKGIRIHKIEGNLVFKNVNFSYPDKpENVILPNFNLVLEKGKSYAFVGQTG 416
145789*******9999999***********99887766666...5555555689**************8762566779******************* PP
TIGR03796 516 sGkstiaklvaGlyepwsGeilf.DgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaeg 612
+Gksti+kl+ +y+p+sGe+l+ D+++ +++ n + +v+qd +++ gtv dnl ++ ++e+++ A+k A +hd +++ p++y++ l e
MMSYN1_0371 417 AGKSTISKLLLRFYDPTSGEVLInDNINIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNLRYVKPSATDEEIILACKKAELHDLVTTWPEQYNTILGER 514
********************987588999********************************************************************* PP
TIGR03796 613 ganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr..RgctciivaHRLstiRdcdeiivlerGk.vverGtHeellakegaYar 707
g lsGGq+qRl iAR knP iLilDEatsaLD +Ek+i+++l + g t i +aHRLstiR++d+iivl k +++ Gt +el++k g +++
MMSYN1_0371 515 GFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEElmQGRTSITIAHRLSTIRNVDQIIVLAPKKgIIQIGTFKELVKKPGEFKD 612
**********************************************96558***********************855449***************998 PP
TIGR03796 708 L 708
L
MMSYN1_0371 613 L 613
8 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 258.2 7.8 4.7e-79 3.5e-77 139 684 .. 36 599 .. 8 609 .. 0.82
Alignments for each domain:
== domain 1 score: 258.2 bits; conditional E-value: 4.7e-79
TIGR03375 139 WfwstlkeskrlyrdvliasllinllalavpLFvmnVYdrVv...PnqaietLwvLaiGvalv.....lvfdlvlkllRsylldvagkkvdlilsakl 228
+w+++k +k++ + +li +++ l+a +pL + + V q ++ w L+ v+l+ lv+ ++l ++ + + +gkk++++l ++l
MMSYN1_0371 36 VIWKHMKINKKWAIGLLITAIFSALFAALNPLLMQQLQFAVEfekTHQNFSNSWGLSWKVILAiwiviLVITAILTYIANLFGNELGKKIEISLRNEL 133
5566666666666667777777777777777766665444431112233444455555444431111156788999999999999************* PP
TIGR03375 229 fervlglrlea.rpasvGsfasqlrefesvrdfltsatltalvDLpfvllfllvialiggplvlvplvavplvllvglllq...kplsklaeeslres 322
++++ +++ ++++G + +++ + ++ + +s + f+++f l+ +i l + l+ + l l++g+l p++kl+ + +
MMSYN1_0371 134 TRKLITTDIHYySNKKTGEILTKVVSDTQIIGMQASVIPNIIFTAFFTMVFTLITLFITTSLY-IGLFFISLFLMFGILFGlsfLPMRKLVFNLRKII 230
********986267899*999998888888887777665555555566666666666666553.34444444444444432111599*********** PP
TIGR03375 323 aqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAav.iLsgRalaP 419
+ n+ + + +++++ ika++ e+ ++++ q++ k ++ ++++++++ ++ v++++ ++ +l +++ t+ +++ + i +g ++P
MMSYN1_0371 231 TDINGDVTDRINTIKLIKANGTEEYEKTRFVQIHDVYYKKYKQISYFQSVMISILFFAINTVQILMTLIALWLYKNDITTLKTILGPMlICAGMLIGP 328
************************************************************************999999999998876515588899** PP
TIGR03375 420 laqlaglltryqqaktalesldelmklpv...ereeekrllsreklkGeielknvsfkYpeeekaa.LknvslkikpGekvaiiGriGsGKstllkll 513
++ql ++ + qa+t+ +++de+ ++ + +++ +k+ ++ +k++G++ +knv+f+Yp++ +++ L n +l ++ G a +G++G+GKst+ kll
MMSYN1_0371 329 IMQLLRAIIGMVQASTSAQRIDEITDATQlinNHSLDKKGIRIHKIEGNLVFKNVNFSYPDKPENViLPNFNLVLEKGKSYAFVGQTGAGKSTISKLL 426
************************8766433388889**********************9997765379***************************** PP
TIGR03375 514 lglyepteGsvll.dgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrq 610
l++y+pt+G+vl+ d+++i+ + ++igyv+qd++ + Gt+ dN+ + +p+a+dee++ a ++a ++++v + p+ +++ +gerG LSgGQ+q
MMSYN1_0371 427 LRFYDPTSGEVLInDNINIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNLRYVKPSATDEEIILACKKAELHDLVTTWPEQYNTILGERGFILSGGQKQ 524
***********99678******999999********************************************************************** PP
TIGR03375 611 avalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGr.ivadGp 684
+++aR++lk+p+il+LDE tsalDn e+++ +L+el++++T + ++Hr s ++ vd+iivl + i+ G+
MMSYN1_0371 525 RLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIAHRLSTIRNVDQIIVLAPKKgIIQIGT 599
***************************************************************976552554455 PP
>> TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 235.4 6.8 4.2e-72 3.1e-70 115 682 .. 25 614 .. 16 616 .. 0.81
Alignments for each domain:
== domain 1 score: 235.4 bits; conditional E-value: 4.2e-72
TIGR03797 115 plpdkklklldllkfalrgaerdllavllvgllgtllglvvPlatgilldeviPdaersll.......lqvalallaa.algallfqlaqslavlRle 204
+++ + ++++++ ++ +++ + +l+++++ +l++ + Pl++++l v + ++++ ++v+la+ ++ + +++++++ +l l
MMSYN1_0371 25 SFNRGRKSFINVIWKHMKINKKWAIGLLITAIFSALFAALNPLLMQQLQFAVEFEKTHQNFsnswglsWKVILAIWIViLVITAILTYIANLFGNELG 122
56677778888999999999888899999***************99997666555544443222222367777776551566788999********** PP
TIGR03797 205 tavdaslqaavwdrLLrlpasfFreysagdLasramgvsqirrllsgatlkallssifal.lnlvlllvy.slklalvavllalvaiavtlvlgllqv 300
++++sl+ + +L+ +++ + ++g++++++ + +qi + ++++ + +++++f++ ++l+ l++ sl + l + l l+ ++ ++ l +
MMSYN1_0371 123 KKIEISLRNELTRKLITTDIHYYSNKKTGEILTKVVSDTQIIGMQASVIPNIIFTAFFTMvFTLITLFITtSLYIGLFFISLFLMFGILFGLSFLPMR 220
*********************************************************98526788887751555566666665555555555555555 PP
TIGR03797 301 rkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqrie....dlltvlnavlpvltsavlfalaisllaaaklslgsf 394
+ +l ++ +++g + + in i+ ++ g+ee +++ + + k + +++ ++ ++l +++++l++++ +l +++ +l +
MMSYN1_0371 221 KLVFNLRKIITDINGDVTDRINTIKLIKANGTEEYEKTRFVQIHDVYYKKYKQISYFQsvmiSILFFAINTVQILMTLIALWLY----KNDITTLKTI 314
5677888899**********************9877666665544444444444444400004444444444555554444444....4555555555 PP
TIGR03797 395 la.fntafgsflkavtslaetlievlavvplyerakPileaepEvde.....ekvdpgkLsGaievdrvtFrYekd.gplvLddvslkiepGefvaiv 485
l+ + +g++++ +++l +++i ++++ +r++ i +a++ +++ + ++ k++G++ ++v+F Y + +++L + +l e+G+ a+v
MMSYN1_0371 315 LGpMLICAGMLIGPIMQLLRAIIGMVQASTSAQRIDEITDATQLINNhsldkKGIRIHKIEGNLVFKNVNFSYPDKpENVILPNFNLVLEKGKSYAFV 412
55134678999****************************999876550110055667899*************54426789***************** PP
TIGR03797 486 GaSGsGKStllrlLLgFekPesGsvly.DGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTv 581
G+ G+GKSt+ +lLL F P+sG+vl D +++++ + + ++G V Q+ +l g++++n+ ++ t +e a ++a l + +++ P + T+
MMSYN1_0371 413 GQTGAGKSTISKLLLRFYDPTSGEVLInDNINIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNLRYVKPsATDEEIILACKKAELHDLVTTWPEQYNTI 510
************************9754999********************************99999899999************************ PP
TIGR03797 582 isegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR..iviAHRLSTirnadrilvleeGr.vveqGsyeeLlakeG 676
+ e g lSGGQ+QRl+iAr + P il++DEATSALDN + + + le+l R i iAHRLSTirn d+i+vl+ + +++ G+++eL++k G
MMSYN1_0371 511 LGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRtsITIAHRLSTIRNVDQIIVLAPKKgIIQIGTFKELVKKPG 608
****************************************************987554499*****************8544399************* PP
TIGR03797 677 lfaela 682
f++l
MMSYN1_0371 609 EFKDLY 614
**9986 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 226.8 0.3 2e-69 1.4e-67 41 529 .] 89 588 .. 45 588 .. 0.84
Alignments for each domain:
== domain 1 score: 226.8 bits; conditional E-value: 2e-69
TIGR02857 41 aellta..laalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvil 136
l++ la+ +++l++ a+l+++++ +++ + +++ lr++l +k+ ++ ++kk+ge+ t ++ ++ + a +p+++ +++ ++v+
MMSYN1_0371 89 WGLSWKviLAIWIVILVITAILTYIANLFGNELGKKIEISLRNELTRKLITTDIHYYSNKKTGEILTKVVSDTQI-IGMQASVIPNIIFTAFFTMVFT 185
344444324455566677899*************************************************99865.57788899**999999998877 PP
TIGR02857 137 aavltadwisalillltlPlipiFmiLiGsaaqaaarkql...aalsrLsghfldlvrglptLklfgrakaeaaaikriseeyrerTmevLriAfLSs 231
++ l++ +s i l + l +F iL G + + + ++ ++g + d+++ ++ +k+ g ++ e+++ +i + y ++ + i++ s
MMSYN1_0371 186 LITLFI-TTSLYIGLFFISLFLMFGILFGLSFLPMRKLVFnlrKIITDINGDVTDRINTIKLIKANGTEEYEKTRFVQIHDVYYKKYKQ---ISYFQS 279
655544.678888888888999999999988655554444111678999**********************************998654...666655 PP
TIGR02857 232 lvLe..llatlsvAlvAVyiGlrllagkldlaegLl..vLlLaPevylPlRqlgaqyHakaegvaaaealvevldaeeqpeaekapltaaass....s 321
+++ ++a v + i l l++ +++ + +l +L+ a + P+ ql + ++ ++a+ + e++da++ + +++ + + + + +
MMSYN1_0371 280 VMISilFFAINTVQILMTLIALWLYKNDITTLKTILgpMLICAGMLIGPIMQLLRAIIGMVQASTSAQRIDEITDATQLINNHSLDKKGIRIHkiegN 377
554321455556677777888888899998777777568999*********************************77777776666666665577899 PP
TIGR02857 322 lelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvnga.elaeldadswrkqiawvpQkPllfegtvaeni 416
l ++nv+++y+++ +l +++l +e g+ +a vG+ GaGKst+ klll+f +pt+G++l+n++ +++++ s+ ++i++v Q P ++ gtv +n+
MMSYN1_0371 378 LVFKNVNFSYPDKPenVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNiNIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNL 475
************997345789*****************************************877699999999************************ PP
TIGR02857 417 rlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllva 514
r ++ a+++e+ a ++a+l++lv + p+ ++t +Gerg LSgGq+qRl +Ar++l++ ++l+lDE t++LD+ e+e++++l+el++grt + +a
MMSYN1_0371 476 RYVKPSATDEEIILACKKAELHDLVTTWPEQYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIA 573
************************************************************************************************** PP
TIGR02857 515 Hrlalaeladkivvl 529
Hrl++++++d+i+vl
MMSYN1_0371 574 HRLSTIRNVDQIIVL 588
************986 PP
>> TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 220.9 23.6 1.1e-67 8e-66 146 707 .. 32 615 .. 10 616 .. 0.78
Alignments for each domain:
== domain 1 score: 220.9 bits; conditional E-value: 1.1e-67
TIGR01193 146 kfiPlllk....qkklilliviaailvllisiagsyylqki...idvyiP.nklkntlg....iislglilayilqqvlsyikafllivlgqrlsidi 231
+fi ++ k +kk + ++i+ai l + + +q++ ++ ++ n g +i i++ ++ ++l+yi + + + lg+++ i +
MMSYN1_0371 32 SFINVIWKhmkiNKKWAIGLLITAIFSALFAALNPLLMQQLqfaVEFEKThQNFSNSWGlswkVILAIWIVILVITAILTYIANLFGNELGKKIEISL 129
45555544111234555556666666666667777776665322333222033344443112234445688999************************ PP
TIGR01193 232 ilsyikhlfelPmsffstrrvGeivsrftdaskiidalasti....lslfldlsilvivglvlvlqniklfllslvaiPvyaviiilfkktfeklnkd 325
+ + l+ + ++s +++Gei+++ ++ii as+i ++ f+ + + +i+ ++ + + i lf++sl ++ ++ l + +++kl +
MMSYN1_0371 130 RNELTRKLITTDIHYYSNKKTGEILTKVVSDTQIIGMQASVIpniiFTAFFTMVFTLITLFITTSLYIGLFFISLFL--MFGILFGLSFLPMRKLVFN 225
***************************999999**999998711114445555555555555555555555555543..2344444444455666666 PP
TIGR01193 326 ameanavlnssiiedlnGietiksltseeerykkidsefadyle..kslkyakaeavqqalkav..lklilnvvilwvGallvirekltlGq.lltfn 418
+ + +n + + +n i+ ik+ ++ee ++++ + y + k+++y ++ + + a+ +++ ++++ lw+ + + k lG l++
MMSYN1_0371 226 LRKIITDINGDVTDRINTIKLIKANGTEEYEKTRFVQIHDVYYKkyKQISYFQSVMISILFFAIntVQILMTLIALWLYKNDITTLKTILGPmLICAG 323
66666678999**************99887666655555555541246777777777665544322788899999****************7256678 PP
TIGR01193 419 allsyflnPleniinlqpklqaarvannrlnevylvdsefkekkkltelenlngdievndvsysyGyg..sevledislkikknekitlvGlsGsGks 514
+l++ ++ l+ ii + +a+ ++ + l++ +kk ++ +g++++++v++sy + +l + +l ++k ++ + vG +G+Gks
MMSYN1_0371 324 MLIGPIMQLLRAIIGMVQASTSAQRIDEITDATQLINNHSLDKKG-IRIHKIEGNLVFKNVNFSYPDKpeNVILPNFNLVLEKGKSYAFVGQTGAGKS 420
999999999999999866666666666666667899999888885.678999*************8642155899*********************** PP
TIGR01193 515 tlakllvkffqaesGeillng.kslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeass 611
t+ kll++f++++sGe+l+n+ +++kd+ + ++i y+ q+P ++ G++++nl k+ +++eei+ a++ ae++d + p y+t l e ++
MMSYN1_0371 421 TISKLLLRFYDPTSGEVLINDnINIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNLR-YVKPSATDEEIILACKKAELHDLVTTWPEQYNTILGERGFI 517
*******************96379******************************86.5799************************************* PP
TIGR01193 612 isgGqkqrlalarallsdskvlildestsnldlltekkivenllkl.kdktiifvahrlsvakksdkiivld.eGkiieqGshkellkenGfyaslih 707
+sgGqkqrl +ar +l + ++lilde+ts ld ++ek i +l +l + +t i +ahrls +++d+iivl + +ii+ G++kel+k+ G +++l++
MMSYN1_0371 518 LSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELmQGRTSITIAHRLSTIRNVDQIIVLApKKGIIQIGTFKELVKKPGEFKDLYE 615
*******************************************8752789********************9835569*****************9986 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 201.1 6.8 9.8e-62 7.2e-60 55 569 .. 93 616 .. 37 621 .. 0.81
Alignments for each domain:
== domain 1 score: 201.1 bits; conditional E-value: 9.8e-62
TIGR01192 55 vlvilllwagfgvfnii.ayvlvareadrlahgrratllteafgriismplswhsqrgtsnalhtllrasetlfglwlefmrqhlat..fvallllip 149
vil++w+ + v i +y++ + l ++ ++l +e ++i+ + ++s++ t + l ++ ++ + g+ + + + t f ++ li
MMSYN1_0371 93 WKVILAIWIVILVITAIlTYIA-NLFGNELGKKIEISLRNELTRKLITTDIHYYSNKKTGEILTKVVSDTQ-IIGMQASVIPNIIFTafFTMVFTLIT 188
46899***98876655515655.556788********************************9998887775.56777776666554411334455666 PP
TIGR01192 150 valamdlrlslvlvvlgivyvliaklvmsrtkegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftekllsaqypvldww..alasgl 245
++ l + l +++l +++ ++ l + ++ + + ++ v+d i + ++++ e e + + + + +y + ++ + s l
MMSYN1_0371 189 LFITTSLYIGLFFISLFLMFGILFGLSFLPMRKLVFNLRKIITDINGDVTDRINTIKLIKANGTEEYEKTRFVQIHD-VYYKKYKQISYFqsVMISIL 285
66666777777777777777776666666777778889999999***************998877777666666544.55566666666522477888 PP
TIGR01192 246 nriastislviilvigtvlvkkgelsvgevia.figfanlligrldqlkafvtqivearakledffdledsvkereepa.dar..elknvkgavefrd 339
t+ +++ l+ l k+ ++ ++ ++ a +lig + ql + +v+a + + + ++ d+++ ++ + d + +++++g++ f++
MMSYN1_0371 286 FFAINTVQILMTLI-ALWLYKNDITTLKTILGpMLICAGMLIGPIMQLLRAIIGMVQASTSAQRIDEITDATQLINNHSlDKKgiRIHKIEGNLVFKN 382
88888998887664.455555555555555543667899********999999999999999999999999997766542444226889********* PP
TIGR01192 340 isfefanssqgvr..dvsfeakagqtvaivgptgagkttlinllqrvydpksgqili.dgvdiatvtreslrksiatvfqdagllnrsirenirlgre 434
++f +++ + v + + g++ a vg tgagk+t+ ll r ydp+sg++li d ++i+ v s + i v qd +l ++ +n+r +
MMSYN1_0371 383 VNFSYPDKPENVIlpNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLInDNINIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNLRYVKP 480
********999973355566789********************************99789************************************** PP
TIGR01192 435 datdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlst 532
+atdee++ a+k a +d++ ++y+t++gerg lsgg++qrl iar lkn il+ldeatsald e +++ ++ l + rt++ iahrlst
MMSYN1_0371 481 SATDEEIILACKKAELHDLVTTWPEQYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIAHRLST 578
*********************************************************************999999*********************** PP
TIGR01192 533 vreadlvlfld.qgrliekgsfdeliqkdgrfakllra 569
+r+ d ++ l + +i+ g+f+el++k g+f+ l a
MMSYN1_0371 579 IRNVDQIIVLApKKGIIQIGTFKELVKKPGEFKDLYEA 616
*****99988625669*****************99765 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 185.9 0.0 3.7e-57 2.7e-55 67 530 .] 108 576 .. 102 576 .. 0.86
Alignments for each domain:
== domain 1 score: 185.9 bits; conditional E-value: 3.7e-57
TIGR02868 67 avlrYlERLvsHdvalrslgelRvrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlv.vAlvvalaavaliallsvaa.alvlaaa 162
a+l Y+ L + ++ ++ +lR ++ ++L + + + ++G++L+++v+D + + ++P + + +++++++ ++ + + ++
MMSYN1_0371 108 AILTYIANLFGNELGKKIEISLRNELTRKLITTDIHYYSNKKTGEILTKVVSDTQIIG-MQA-SVIPNIiFTAFFTMVFTLITLFITTSLyIGLFFIS 203
6677777777777777888899*******************************98775.333.34454403333444444433333333212334555 PP
TIGR02868 163 llvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgv 260
l +++ ++ +s + +r+ +l++ + ++ +++d ++ + ++++G e ++ + ++ + + k+ + ++ + ++ +a+ + +l++l++
MMSYN1_0371 204 LFLMFGILFGLSFLPMRKLVFNLRKIITDINGDVTDRINTIKLIKANGTEEYEKTRFVQIHDVYYKKYKQISYFQSVMISILFFAINTVQILMTLIAL 301
666666677789999*****************************************999999999999999999999999999999999999999998 PP
TIGR02868 261 eavadg.rlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaas.ekptlelrdlsvsypgaee..vlkgv 354
+ ++ + ++l + +++ ++ +++ l A+ + ++ ++a+Ri+e++da + ++ s ++++ + + +l+++++++syp+++e +l +
MMSYN1_0371 302 WLYKNDiTTLKTILGPMLICAGMLIGPIMQLLRAIIGMVQASTSAQRIDEITDATQLINNHSLDKKGIRIHkIEGNLVFKNVNFSYPDKPEnvILPNF 399
55444314445778888889999999*****************************777777777776555546789*************9997899** PP
TIGR02868 355 sldlepGervavvGasGaGKstLlallaglldplkGevtldg.vsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLa 451
+l le+G++ a vG++GaGKst+ +ll+++ dp +Gev++++ ++++++ + + +++qd+ + tv +Nlr +p atdee+ a ++++L+
MMSYN1_0371 400 NLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDnINIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNLRYVKPSATDEEIILACKKAELH 497
****************************************8736888888888999****************************************** PP
TIGR02868 452 dwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530
d++ p+ ++t lge+g lSGG++qRl++AR+ l++ ++l+LDE t LD +e+e+ ++L + ++grt + ++hrl
MMSYN1_0371 498 DLVTTWPEQYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIAHRL 576
*****************************************************************************96 PP
>> TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 184.1 6.6 1.3e-56 9.5e-55 47 539 .. 96 602 .. 53 606 .. 0.83
Alignments for each domain:
== domain 1 score: 184.1 bits; conditional E-value: 1.3e-56
TIGR01842 47 vltvlvvvlylvlglleavRskvlvrigekldkalnkkifkaaieatl.erkkkeslqalrDl...dqlrqFltgtgliaffDlPwlpiyllvvfll. 139
+l + +v+++++++l + + +g+k++ +l++++ + i++ + ++k++ +l+ + +q+ ++ ++ +f + ++ ++ l+ +
MMSYN1_0371 96 IL-AIWIVILVITAILTYIANLFGNELGKKIEISLRNELTRKLITTDIhYYSNKKTGEILTKVvsdTQIIGMQASVIPNIIFTAFFTMVFTLITLFIt 192
33.34555666777888888888888888888888888888888887754445555555555411145556667778899999999999977755441 PP
TIGR01842 140 .hpylGllalvgavvlvalal.lneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlR 235
y+Gl + + ++++ + l +k + + + + n ++ ++ i+a g + + r+ + ++ + ++ ++ s+ ++++ ++ ++
MMSYN1_0371 193 tSLYIGLFFISLFL-MFGILFgLSFLPMRKLVFNLRKIITDINGDVTDRINTIKLIKANGTEEYEKTRFVQIHDVYYKKYKQISYFQSVMISILFFAI 289
25699987665444.33433303333345555566666777788888888999****************************************99999 PP
TIGR01842 236 ivlqslvlglGaylaikgeitaGmiiagsilv..graLaPidqaievWkqfsaarkaykrl......kelleelpareealklPepegelevenvslv 325
+ +q+l++ + +l k++it+ i g +l+ g ++Pi q++ +++a ++ +r+ ++l+++ + ++ +++ + eg+l +nv++
MMSYN1_0371 290 NTVQILMTLIALWL-YKNDITTLKTILGPMLIcaGMLIGPIMQLLRAIIGMVQASTSAQRIdeitdaTQLINNHSLDKKGIRIHKIEGNLVFKNVNFS 386
****9998887777.589999999999986643388999**999999999999999999982222223578888999999****************99 PP
TIGR01842 326 ppee.kkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrl.DgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenada 421
p++ ++ +l + +++l++G++ a +G+ g+Gks++ +ll+ + p+sG+v + D +++k + ++ ++iGY+ qd ++ Gtv +n+ ++ a++
MMSYN1_0371 387 YPDKpENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLInDNINIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNLRYVKPSATD 484
8865267899*****************************************987899***************************************** PP
TIGR01842 422 ekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllel 519
e++i a k a+ h+l+ p+ Y+t +ge+G LsgGq+qR+ +aR + +P +++LDe + LD+ e+ + + l+el +++t ++i+hr s ++
MMSYN1_0371 485 EEIILACKKAELHDLVTTWPEQYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEEL-MQGRTSITIAHRLSTIRN 581
************************************************************************9999998.57999************* PP
TIGR01842 520 vdkilvlk..dGalkafGeree 539
vd+i+vl +G + G+ +e
MMSYN1_0371 582 VDQIIVLApkKGI-IQIGTFKE 602
******9621443.34555555 PP
>> TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 111.0 20.1 1.1e-34 7.8e-33 954 1514 .. 36 611 .. 34 617 .. 0.83
Alignments for each domain:
== domain 1 score: 111.0 bits; conditional E-value: 1.1e-34
TIGR00957 954 vywdyak.....aiglfitllsillflcnsvsalasnywlsl..wtddavvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhl 1042
v w+++k aigl+it + lf + + + + t++ ++ k+ l+++ + ++ i+ + + + g l
MMSYN1_0371 36 VIWKHMKinkkwAIGLLITAIFSALFAALNPLLMQQLQFAVEfeKTHQNFSNSWGLSWKVILAIWIVILVITAILTYIANLFGNELGKKIEISLRN 131
6666666555557888888887777776655444443333321146677888888888888888888888888888888888888888888999** PP
TIGR00957 1043 dllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevi.kmllgslfnvigavivillatpla.aviilplallyflvqrfyvassrqlkrle 1136
+l + + + ++ + +g+++ + + +++ a+vi ++++++f+++ ++i ++++t l+ + + l l++ ++ + r+l
MMSYN1_0371 132 ELTRKLITTDIHYYSNKKTGEILTKVVSDTQIIGM-QASVIpNIIFTAFFTMVFTLITLFITTSLYiGLFFISLFLMFGILFGLSFLPMRKLVFNL 226
*****************************999865.45555267889***************9996246677788888777776666677765444 PP
TIGR00957 1137 svsrspvyshfnetllgvsvirafe....eqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfavisrsslsaglvglsvsy 1228
+ + ++ + + +i+a e+ rf+++ d+ + ++ y + v l ++ v + l+a + ++l++ l + +
MMSYN1_0371 227 RKIITDINGDVTDRINTIKLIKANGteeyEKTRFVQIHDVYYKKYKQISYFQSVMISILFFAINTVQILMTLIALWLYKNDITTLKTILGPMLICA 322
44456788899999999999998641122456899****999887776666666667778888888888888887777777888888888888888 PP
TIGR00957 1229 slqvtaylnwlvrmsseletnivaverlkeysetekeapwqieetappsswpksgrvefrnyslryredl.dlvlrdlnvtieggekvgivgrtga 1323
+ + ++ l+r + + +r+ e +++ + + + g++ f+n + y ++ +++l ++n+ +e g+ vg+tga
MMSYN1_0371 323 GMLIGPIMQ-LLRAIIGMVQASTSAQRIDEITDATQLINNHSLDKKGIRIHKIEGNLVFKNVNFSYPDKPeNVILPNFNLVLEKGKSYAFVGQTGA 417
888877665.678888888888999******9998888888888889999999*************8775168899******************** PP
TIGR00957 1324 gkssltlglfrinesaegeiii.dglniakiglhdlrfkltiipqdpvlfsgslrmnldpfs.qysdeevwlalelahlkdfvsalpdkldfecae 1417
gks+++ l+r + + ge+ i d +ni ++ l ++ + qdp ++ g++ nl + +dee+ la + a l+d+v++ p++ + e
MMSYN1_0371 418 GKSTISKLLLRFYDPTSGEVLInDNINIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNLRYVKpSATDEEIILACKKAELHDLVTTWPEQYNTILGE 513
*******************988689*********************************98753789****************************** PP
TIGR00957 1418 ggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvld.kgevaefdapsellqqrgi 1512
g ls gq+q + +ar +l++ il+ldeat+a+d ++ iq+ + ++ t +tiahrl ti + +++vl k + ++++ el+++ g
MMSYN1_0371 514 RGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIAHRLSTIRNVDQIIVLApKKGIIQIGTFKELVKKPGE 609
*************************************************************************99544556678999999999887 PP
TIGR00957 1513 fy 1514
f
MMSYN1_0371 610 FK 611
75 PP
>> TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.7 0.1 5.3e-34 3.9e-32 3 230 .. 380 610 .. 378 615 .. 0.83
Alignments for each domain:
== domain 1 score: 109.7 bits; conditional E-value: 5.3e-34
TIGR04520 3 venvsfkYee.eekkalkdvsleiekgefvaiiGhNGsGKsTlakllnglllpeegkvlvdgletleeenlweirkkvglvfqnPdnqlvgatveedv 99
++nv+f+Y++ e+ +l + +l +ekg+ a +G+ G+GKsT++kll ++ p++g+vl+++ +++ l + +++g v q+P ++ tv +++
MMSYN1_0371 380 FKNVNFSYPDkPENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKDVFLPSYLNHIGYVEQDPS--VLLGTVFDNL 475
79******99566779*********************************************999999******************7..4556788888 PP
TIGR04520 100 aFgl.....EN..lgvpreeikkrveealkkvgleefrkkepkkLSGGqkqrvaiagvlalepeiiilDEatsmLDpkgrkevletvkklkkeekltv 190
+ E l+ +++e+++ v++ ++ +++ + LSGGqkqr+ ia ++ +p+i+ilDEats LD ke+ + +++l + + t
MMSYN1_0371 476 RYVKpsatdEEiiLACKKAELHDLVTTWPEQY--NTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQ--GRTS 569
77541111122112335555666666555544..4667788899**********************************************95..6799 PP
TIGR04520 191 isitHdleeaveadrvivlekgk.ivaegtpkeifskkekl 230
i+i+H+l+ + + d++ivl k i++ gt ke+++k ++
MMSYN1_0371 570 ITIAHRLSTIRNVDQIIVLAPKKgIIQIGTFKELVKKPGEF 610
*******************8554388889999999887665 PP
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 99.6 0.0 5.1e-31 3.8e-29 3 239 .. 380 610 .. 378 616 .. 0.84
Alignments for each domain:
== domain 1 score: 99.6 bits; conditional E-value: 5.1e-31
TIGR04521 3 lknvsyiYqkgtpfekkalkdvsleiekgefvaiiGhtGsGKstliqhlngLlkptsGeveidgleikakkkkkkklkelrkkvglvFQfpekQLFee 100
+knv++ Y ++ e+ l + +l +ekg+ +a +G+tG+GKst+ ++l ptsGev i++ i + k+ l + +++g+v Q p
MMSYN1_0371 380 FKNVNFSYPDKP--ENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDN-I--NIKDVF-LPSYLNHIGYVEQDPSVL--LG 469
89******6663..8999********************************************987.4..345666.999**********99865..58 PP
TIGR04521 101 tvlkdiafgpknlglseeeveervkealelvgld....eellerspfeLSGGqkrrvAiagvLamepevLvlDEptaGLDpkgrkellellkklkkek 194
tv++++ + + +e + + +e+ +lv +++l + f LSGGqk+r+ ia ++ +p++L+lDE+t+ LD +ke+ + l++l +
MMSYN1_0371 470 TVFDNLRYVKPSATDEEIILACKKAELHDLVTTWpeqyNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQG- 566
********9777666666666666677777765331134567899*************************************************976. PP
TIGR04521 195 gktvilvtHsmedvaeladrvivlk.kGkvvldgtpeevfkeeeel 239
+t i+++H++ + + +d++ivl k +++ gt +e+ k+ e+
MMSYN1_0371 567 -RTSITIAHRLSTIRN-VDQIIVLApKKGIIQIGTFKELVKKPGEF 610
.99********99876.67777776255577788888888876655 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 96.7 0.0 4.2e-30 3.1e-28 4 235 .. 380 608 .. 377 613 .. 0.86
Alignments for each domain:
== domain 1 score: 96.7 bits; conditional E-value: 4.2e-30
TIGR00972 4 vknlklfygek...ealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsi 98
kn++++y +k l + nl ++k k a++G +G+Gkst+ + l r+ d + +G+vl++ ++i+ k++ ++ +++G v q p+ ++
MMSYN1_0371 380 FKNVNFSYPDKpenVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPT-----SGEVLIN-DNINIKDVFLPSYLNHIGYVEQDPSVLLGTV 471
577888886542115899**********************************98.....89*9986.57888888999999***************** PP
TIGR00972 99 ydnvayglrlkgikdkkeldeiveesLkk.aalw.devkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkky 194
+dn+ y +d + + + ++ L++ ++ w ++ ++ l + ++ LsGGq+qrl+iar +P++l+lDe tsaLD + ++i++ ++eL +
MMSYN1_0371 472 FDNLRYVKPSA--TDEEIILACKKAELHDlVTTWpEQYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGR 567
******75544..455666666666666535666256677899******************************************************* PP
TIGR00972 195 tivivthnmqqaarvsdktaffleGelveegeteqifekpk 235
t + + h ++ + v + +++ + ++ g+ +++++kp
MMSYN1_0371 568 TSITIAHRLSTIRNVDQIIVLAPKKGIIQIGTFKELVKKPG 608
*********99988888888888888999999999999986 PP
>> TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.9 0.0 9 6.6e+02 157 177 .. 61 83 .. 56 87 .. 0.73
2 ! 96.7 0.1 4.8e-30 3.5e-28 11 222 .. 398 608 .. 392 618 .. 0.86
Alignments for each domain:
== domain 1 score: -2.9 bits; conditional E-value: 9
TIGR01186 157 fsaldPlirdelq..delvklqk 177
f+al+Pl+ ++lq e+ k ++
MMSYN1_0371 61 FAALNPLLMQQLQfaVEFEKTHQ 83
99********9993336666555 PP
== domain 2 score: 96.7 bits; conditional E-value: 4.8e-30
TIGR01186 11 dvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerke 108
+ +l +e+G + ++G +G+Gkst+ +ll r+ +Pt+G++li+ + ++i+d+ l i++v q+ +++ t+ dn+ ++ + +e
MMSYN1_0371 398 NFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDN--INIKDVFL-PSYLNHIGYVEQDPSVLL-GTVFDNLRYVKPSATDEEIILAC 491
678999************************************743..57788888.666799*******99875.69********9988877777788 PP
TIGR01186 109 kalealklvdl..eeyedryPde...lsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdriv 201
k e+ lv e+y+ ++ lsGG++qr+ +ar + +Pd+l++dea sald ++ +e+q l +l + +t + i+h l +r d+i+
MMSYN1_0371 492 KKAELHDLVTTwpEQYNTILGERgfiLSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQ--GRTSITIAHRLST-IRNVDQII 586
888888888877778887776655559********************************************975..79*********75.66667766 PP
TIGR01186 202 il.kaGeivqvGtPdeilrnPa 222
+l + i+q+Gt e+++ P
MMSYN1_0371 587 VLaPKKGIIQIGTFKELVKKPG 608
6625677***********9996 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 89.2 0.0 7.7e-28 5.7e-26 5 206 .] 384 588 .. 380 588 .. 0.79
Alignments for each domain:
== domain 1 score: 89.2 bits; conditional E-value: 7.7e-28
TIGR03608 5 skkfkdk...eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlel 99
+ ++ dk +il +++l +ekG+++a vG+ G+GKst+ +l ++ ++ sg+v+++++ ++k+ + + +++gy+ q+ ++l tv +nl+
MMSYN1_0371 384 NFSYPDKpenVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNI--NIKDVFLPS-YLNHIGYVEQDPSVL-LGTVFDNLRY 477
55555554449**********************************************998..566666655.5699*******9987.469*****97 PP
TIGR03608 100 alklkkkskkekekkkkevlekv.gl.....ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivt 191
+k + + ++ kk l+++ ++ l ++ + lsgG+kqR+ +ar+ lk++++++ DE t++LD+ ++e+ + l+el +g+t i +
MMSYN1_0371 478 -VKPSATDEEIILACKKAELHDLvTTwpeqyNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELM-QGRTSITIA 573
.3433333333333333333332122211124556677899*******************************************9996.79999**** PP
TIGR03608 192 Hdpevaekadrviel 206
H + +++d++i l
MMSYN1_0371 574 HRLSTIRNVDQIIVL 588
************975 PP
>> TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 81.2 12.1 1.9e-25 1.4e-23 56 545 .. 99 591 .. 82 599 .. 0.79
Alignments for each domain:
== domain 1 score: 81.2 bits; conditional E-value: 1.9e-25
TIGR01194 56 lsfvGlsllallsrivadlftayvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtllilttllvel..avtlfglaylaylsv 151
++ v l + a+l a+lf +++i lr el++k++++ + +++ ++lt + sd + + + +++ ++ + ++++ ++ + s+
MMSYN1_0371 99 IWIVILVITAILT-YIANLFGNELGKKIEISLRNELTRKLITTDIHYYSNKKTGEILTKVVSDTQIIGMQASVIPNIIFTAffTMVFTLITLFITTSL 195
5667777767665.6789************************************************99999999988876422666777788888888 PP
TIGR01194 152 vvflltvvlivlGvaayllarsrGlkftykvrdeedelnkyttalvsGlkelklnrirrlsfarsa.isesavrvadlniieilifilaktvGsllls 248
+ l+ ++l+++ ++ l + k +++ r +++n +t + +k +k n+ + +++ ++ v ++++ i +f + s+l++
MMSYN1_0371 196 YIGLFFISLFLMFGILFGLSFLPMRKLVFNLRKIITDINGDVTDRINTIKLIKANGT--EEYEKTRfVQIHDVYYKKYKQI--SYFQS--VMISILFF 287
8888889998888888899999999*******************************9..4555555145455555555444..44443..33455555 PP
TIGR01194 249 ll..vGllltlaayfavida....kaisasvlvll.yikGplvqlvsilpilararvaftrlaelserisepepelelseaenvllldhdksvdslel 339
+ v +l+tl a++ + k+i + +l+ + Gp+ ql+ ++ + +a + +r+ e++ + + + + ++ + +k + l +
MMSYN1_0371 288 AIntVQILMTLIALWLYKNDittlKTILGPMLICAgMLIGPIMQLLRAIIGMVQASTSAQRIDEITDATQLINNHSLD--KK---GIRIHKIEGNLVF 380
433377788888888766541112566665555542568******999988899***********9998888777653..33...35678999***** PP
TIGR01194 340 kdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGe.avsdesrddyrdlfsavfadyy.lfddlvqpde 435
k+v++sy+d e l +l +++G+ vG+ G Gkst+ klll +y p +Ge+l++ + + d y + v d l+ + +
MMSYN1_0371 381 KNVNFSYPDK--PENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNiNIKDVFLPSYLNHIGYVEQDPSvLLGTVFDNLR 476
*******985..68899********************************************9872566667899***999999996514444445445 PP
TIGR01194 436 kkqasldqattyl..srleledkvkvedlnystttd.....lstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvi 526
++s + + l ++ el+d v +y t ls Gq++rl + +l++ +l+lde ++ d + +l +l +G+t + i
MMSYN1_0371 477 YVKPSATDEEIILacKKAELHDLVTTWPEQYNTILGergfiLSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKL-EEL-MQGRTSITI 572
5566665555555227899********99**97542233339*************************99999988877765554.444.59******* PP
TIGR01194 527 shddryfeladrlikladG 545
+h + d++i la
MMSYN1_0371 573 AHRLSTIRNVDQIIVLAPK 591
**************99864 PP
>> TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 79.6 12.0 3.2e-25 2.3e-23 971 1446 .. 140 611 .. 129 617 .. 0.73
Alignments for each domain:
== domain 1 score: 79.6 bits; conditional E-value: 3.2e-25
TIGR01271 971 apmavlntlkagrilnrfskdiaiid...dllpltlfd.liqlllivlgaiavvsvlqpyilvaaipvavif.ivlrayflrtsqqlkqlesears 1061
+ + + + k+g+il + + d+ ii ++p +f + +++ ++ ++ yi + i + ++f i++ + fl + + +l + +
MMSYN1_0371 140 TDIHYYSNKKTGEILTKVVSDTQIIGmqaSVIPNIIFTaFFTMVFTLITLFITT---SLYIGLFFISLFLMFgILFGLSFLPMRKLVFNLR-KIIT 231
556667788999999999999999852225788888762333333333333333...4477676777777773455666776666555554.3456 PP
TIGR01271 1062 pifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlffiavvfiaiatndegegevgiiltlamnilstlqw 1157
i + ++ + ++a g + y +t f ++h + +y + +fq +i +lff + ++t i l l n ++tl+
MMSYN1_0371 232 DINGDVTDRINTIKLIKANGTEEYEKTRFV---QIHDVYYKKY-KQISYFQS--VMISILFFAINTVQILMTL--------IALWLYKNDITTLKT 313
777888888899999999999999999985...5677666555.45667764..3455555543333222222........233333333444433 PP
TIGR01271 1158 av.....nssidvdglmrsvsrvfkfidlpqeeskpkkstkkyqlskvlvienkhvkk....iwpsggqmtvkdltakyteag.ravlqdlsfsve 1243
+ + + + +m+ + ++ +++ + ++ + t++ ql ++ ++ k i +g++ k++ y ++ + +l ++ + +e
MMSYN1_0371 314 ILgpmliCAGMLIGPIMQLLRAIIGMVQASTSAQRIDEITDATQLINNHSLD-----KkgirIHKIEGNLVFKNVNFSYPDKPeNVILPNFNLVLE 404
3300000334444555555555555555555555555555544444444444.....3354478899************987526789******** PP
TIGR01271 1244 agqrvgllgrtgsgkstllsallrlls.tegeiqi.dgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpye.qysdeeiwkvaeevglksvi 1336
g++ ++g+tg+gkst+ llr+ + t ge+ i d + + v l + +g + q +l gt nl + +deei +++ l+ ++
MMSYN1_0371 405 KGKSYAFVGQTGAGKSTISKLLLRFYDpTSGEVLInDNINIKDVFLPSYLNHIGYVEQDPSVLLGTVFDNLRYVKpSATDEEIILACKKAELHDLV 500
************************98559****99689*********************************86542568***************** PP
TIGR01271 1337 eqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegss.vkq 1431
+p++ + +l + g++ls g kq + +ar l il+lde ++ ld v + i+ l + + t i hr+ ++ + +q++v+ + + q
MMSYN1_0371 501 TTWPEQYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIAHRLSTIRNVDQIIVLAPKKgIIQ 596
************************************************************************************999865432666 PP
TIGR01271 1432 ydsiqkllneasllk 1446
+++ l+++ +k
MMSYN1_0371 597 IGTFKELVKKPGEFK 611
666666666665555 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.6 0.0 1.7e-24 1.2e-22 4 206 .. 380 585 .. 378 592 .. 0.81
Alignments for each domain:
== domain 1 score: 78.6 bits; conditional E-value: 1.7e-24
TIGR02673 4 lekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlen 99
+++v+++y+ + +L + +l +ekg+ + +G+ GaGk+t+ klll p++Gev ++ + ++++ lp+ +ig v qD +l tv++n
MMSYN1_0371 380 FKNVNFSYPdkPENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDN--INIKDVFLPSYLNHIGYVEQDPSVLL-GTVFDN 474
899*****93345569******************************************99865..578999****************9997.59**** PP
TIGR02673 100 valalevrgkkeeeiqkrveevlelvgl.edkakalpee....lsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttviv 192
+ + + ++e + + e+ +lv ++ +++ e lsgG +qR iaR +++P++l+ De t lD+ ++++i + l+el +G t i
MMSYN1_0371 475 LRYVKPSATDEEIILACKKAELHDLVTTwPEQYNTILGErgfiLSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELM-QGRTSIT 571
98766555555555555555555555431334443322134449********************************************97.5788888 PP
TIGR02673 193 athdeelvervkkr 206
+h + +++v++
MMSYN1_0371 572 IAHRLSTIRNVDQI 585
88999999988654 PP
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 0.0 4.2 3.1e+02 47 85 .. 36 74 .. 30 89 .. 0.76
2 ! 75.3 0.0 1.5e-23 1.1e-21 4 218 .. 398 608 .. 395 614 .. 0.87
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 4.2
TIGR02770 47 illdgkelaalalrgreialilqnPrsafnPlltikeql 85
++ + +++++ +g i+ i+ a+nPll + q+
MMSYN1_0371 36 VIWKHMKINKKWAIGLLITAIFSALFAALNPLLMQQLQF 74
66678888999999999999***********98766554 PP
== domain 2 score: 75.3 bits; conditional E-value: 1.5e-23
TIGR02770 4 dvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgk.elaalalrg..reialilqnPrsafnPlltikeqlletlkalekls.. 96
+ nl l +gk a+vG+ G+Gks+ ++ +l + d tsGe+l++++ ++++++l + ++i+++ q+P + ++ + ++ + e +
MMSYN1_0371 398 NFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYD----PTSGEVLINDNiNIKDVFLPSylNHIGYVEQDPSVLLGTVFDNLRYVKPSATDEEIILac 491
689******************************9....6899999987537777755443389*********99999999888888888777766623 PP
TIGR02770 97 kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaelad 194
k+a ++ l + e+ +++l + f lsGG qR++ia l ++ +li De t++lD vv++e+ +leel++ r + + i+h l+ + ++ +
MMSYN1_0371 492 KKA---ELHDLVTTWPEQYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGR--TSITIAHRLSTIRNVDQ 584
444...48999999999**********************************************************9855..56899*******99866 PP
TIGR02770 195 evavmekGkivergtvkelfqePk 218
+++ k i+ gt kel+++P
MMSYN1_0371 585 IIVLAPKKGIIQIGTFKELVKKPG 608
666666777************997 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 74.7 0.3 2.4e-23 1.8e-21 16 204 .. 398 590 .. 378 599 .. 0.78
Alignments for each domain:
== domain 1 score: 74.7 bits; conditional E-value: 2.4e-23
TIGR01277 16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtr...sapyerpvsmlfqennlfahltvrqniglGlkpglk....lnavqk 106
+f+l +e+G+ a +G++GaGkst+ +l+ f p+sGe+ +nd+ ++ ++ y + + q+ ++ tv +n+ +kp+ + a +k
MMSYN1_0371 398 NFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKdvfLPSYLNHIGYVEQDPSVLL-GTVFDNLRY-VKPSATdeeiILACKK 493
7******************************************9866542226788888998888887764.59****986.7887542222557777 PP
TIGR01277 107 ekvedvarqvGiadylerlpee...lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvv 201
+++d+ + ++y l e+ lsGGq+qr+ +ar ++++ il+lde sald+ + +e+ a +++l + +t + ++h+ls ++ ++q++v
MMSYN1_0371 494 AELHDLVTTWP-EQYNTILGERgfiLSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQG--RTSITIAHRLSTIR-NVDQIIV 587
77777766543.33444443334449*********************************************976..588999****9765.6789988 PP
TIGR01277 202 ved 204
++
MMSYN1_0371 588 LAP 590
864 PP
>> TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.0 0.0 1.9e-23 1.4e-21 3 224 .. 379 608 .. 377 618 .. 0.81
Alignments for each domain:
== domain 1 score: 75.0 bits; conditional E-value: 1.9e-23
TIGR03864 3 eveglsfaygkr...ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGl.dlrra.pkealarlGvvfqqstlDldlsveqnl 95
++++f+y ++ +l + +l ++kg+ a +G GaGkst+ +ll r y+ ++ge+ ++ ++++ + l+++G v q++++ l +v nl
MMSYN1_0371 379 VFKNVNFSYPDKpenVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNiNIKDVfLPSYLNHIGYVEQDPSVLLG-TVFDNL 475
56788888875522268999****************************************986515554424689************9775.9***** PP
TIGR03864 96 ryh...aaLhGlsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLW 188
ry a+ + + a +++++++++ + + e+ L+GG+++r+ iar l +P++L+lDeat LD ++++++++el++ g + +
MMSYN1_0371 476 RYVkpsATDEEIILACKKAELHDLVTTWpeQYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQ--GRTSIT 571
**6443666777777777777777776422677778999999**********************************************94..445556 PP
TIGR03864 189 athlvdeveaedrlvvlh.kGkvlaqGaaaelaaead 224
h + +++ d+++vl k + + G+ +el+++ +
MMSYN1_0371 572 IAHRLSTIRNVDQIIVLApKKGIIQIGTFKELVKKPG 608
6899*************73344777899999987644 PP
>> TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.2 0.0 1.9e-09 1.4e-07 22 69 .. 391 438 .. 371 446 .. 0.89
2 ! 43.8 0.0 7e-14 5.2e-12 150 229 .. 517 594 .. 490 616 .. 0.87
Alignments for each domain:
== domain 1 score: 29.2 bits; conditional E-value: 1.9e-09
TIGR02769 22 qrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevs 69
+ +l n +l le+G++ a++G++GaGkst+++lll + P++Gev
MMSYN1_0371 391 PENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVL 438
5667899***************************************96 PP
== domain 2 score: 43.8 bits; conditional E-value: 7e-14
TIGR02769 150 qlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
lsGGq qr+ iar + +P +++ldea s ld v +i ++l++l q G + + i+h l+ ++++ q +++ + i
MMSYN1_0371 517 ILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQ--GRTSITIAHRLSTIRNVDQIIVLAPKKGI 594
59*********************************************87..889999********998777766555444 PP
>> TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.3 0.0 4.1 3e+02 83 110 .. 37 64 .. 32 135 .. 0.79
2 ! 73.1 0.0 7.8e-23 5.7e-21 14 223 .. 394 608 .. 379 613 .. 0.84
Alignments for each domain:
== domain 1 score: -1.3 bits; conditional E-value: 4.1
TIGR00968 83 lfkhltvrdniafGleirkkdkakikak 110
++kh+ +++ a+Gl i + +a a
MMSYN1_0371 37 IWKHMKINKKWAIGLLITAIFSALFAAL 64
689***********99987776665554 PP
== domain 2 score: 73.1 bits; conditional E-value: 7.8e-23
TIGR00968 14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGr.dvtr..vkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakik 108
++l + +l +++G+ a++G +G+Gkst+ +++ + +p+sG++l++ + ++ + +iG+v q+ +++ tv+dn+ + ++
MMSYN1_0371 394 VILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNiNIKDvfLPSYLNHIGYVEQDPSVLL-GTVFDNLRYVKPSATDEEIILA 490
578899**************************************9987523333114556789*******99875.59******98877777776666 PP
TIGR00968 109 akveellelv.....qleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadri 201
k el +lv q + + lsGGq+qr+ +ar + +p++l+lde +ald v ke++a l +l + t++ ++h + +v + i
MMSYN1_0371 491 CKKAELHDLVttwpeQYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQG--RTSITIAHRLSTIRNVDQII 586
666777777622233455555555678**********************************************985..69999*******99999988 PP
TIGR00968 202 vvlekGkieqvgsaeevydepa 223
v+ k i+q+g+ +e+ ++p
MMSYN1_0371 587 VLAPKKGIIQIGTFKELVKKPG 608
8889999***********9996 PP
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.8 0.1 7.2e-22 5.3e-20 2 218 .. 378 587 .. 377 614 .. 0.81
Alignments for each domain:
== domain 1 score: 69.8 bits; conditional E-value: 7.2e-22
TIGR02315 2 levenlskvypn..gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvl 97
l+++n++ +yp+ ++ +l n nl ++kG+ a +G+ GaGkst+ + + r+ +++sg++l++++ + ++k+ l + ++ig++ q+ ++ tv+
MMSYN1_0371 378 LVFKNVNFSYPDkpENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDN-I-NIKDVFLPSYLNHIGYVEQDPSVL-LGTVF 472
67899*****983346789******************************************9875.4.5788999************98755.6799* PP
TIGR02315 98 envLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkek 195
+n+ + + t ++++ ++++ + +++ + + + +r LsGGq+qR+ iaR ++++p++++ DE +++LD+ k++ +l ++ +
MMSYN1_0371 473 DNLRYVK--PSATDEEIILACKKAELHDLVTTWPE-QYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQG- 566
**86654..44455666667777776665555443.45678899*************************************************9874. PP
TIGR02315 196 gitvivnlHqvdlakkyadrivg 218
t i H+++ ++ d+i+
MMSYN1_0371 567 -RTSITIAHRLSTIRN-VDQIIV 587
.455555577776655.344444 PP
>> TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 70.5 0.0 4e-22 3e-20 20 232 .. 395 607 .. 379 611 .. 0.86
Alignments for each domain:
== domain 1 score: 70.5 bits; conditional E-value: 4e-22
TIGR02314 20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkeki 117
l n +l + kg+ + +g +gagkst+ + + + ptsg+v+++ d ++++ l +ig + q +l tvf+n+ ++ + +
MMSYN1_0371 395 ILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLIN--DNINIKDVFLPSYLNHIGYVEQDPSVLL-GTVFDNLRYVKPSATDEEIIL 489
57899***************************************96..678999*****************99986.59****998776666666667 PP
TIGR02314 118 krkvtellalvgl.sdkkdsypsn....lsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricde 210
k +el lv ++ ++ + lsggqkqr+ iar + +p +l+ deatsald + i l e+ + g t + i+h + ++++ +
MMSYN1_0371 490 ACKKAELHDLVTTwPEQYNTILGErgfiLSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQ--GRTSITIAHRLSTIRNVDQI 585
8999******9752455555433233349*******************************************9865..67788899******999888 PP
TIGR02314 211 vavidkgeliekgtvseifshp 232
+ + k +i+ gt e+ +p
MMSYN1_0371 586 IVLAPKKGIIQIGTFKELVKKP 607
8888888999999999988777 PP
>> TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.6 0.0 7.6e-22 5.6e-20 2 193 .. 412 608 .. 411 619 .. 0.81
Alignments for each domain:
== domain 1 score: 69.6 bits; conditional E-value: 7.6e-22
TIGR01187 2 LGpsGsGkttlLrllaGleeldsGkill.dgedvtev..paekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeike.rvkeaLelv.....ql 90
+G +G+Gk+t+ +ll + ++ sG++l+ d+ ++ +v p+++ +++ v q+ ++ tv++n+ + k ++++ i + + e+ +lv q
MMSYN1_0371 412 VGQTGAGKSTISKLLLRFYDPTSGEVLInDNINIKDVflPSYLNHIGYVEQDPSVLL-GTVFDNLRYV-KPSATDEEIILAcKKAELHDLVttwpeQY 507
699**********************998356788886669***********998774.69*******5.66777776665514444555663334345 PP
TIGR01187 91 eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlr.kGkiaqigepee 187
+++ + lsGGq+qr+ +ar k+P+iL+lDe+ saLD+ + +++q l++l + G t + ++h + + d+i vl k i+qig+ +e
MMSYN1_0371 508 NTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQ--GRTSITIAHRLST-IRNVDQIIVLApKKGIIQIGTFKE 602
6666678889*********************************************986..99*******8775.5666666666516669******** PP
TIGR01187 188 iyeePa 193
+ ++P
MMSYN1_0371 603 LVKKPG 608
*99995 PP
>> TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 67.1 0.1 4.5e-21 3.3e-19 5 225 .. 381 606 .. 377 616 .. 0.79
Alignments for each domain:
== domain 1 score: 67.1 bits; conditional E-value: 4.5e-21
TIGR04406 5 enlaksykkr...kvvkdvslevksgeivGllGPnGaGkttsfymivGlvkadaGkvlldde.ditklplherarlGigylpqeasifrkltveenlk 98
+n++ sy ++ ++ +++l +++g+ ++G GaGk+t +++ + +++G+vl++d+ +i+++ l + igy+ q++s++ tv +nl+
MMSYN1_0371 381 KNVNFSYPDKpenVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNiNIKDVFLPSY-LNHIGYVEQDPSVLLG-TVFDNLR 476
56666664331114678999***************************************87425555444433.457**********976.9****** PP
TIGR04406 99 avlelred..ldkeereekleelleel..eiahlrekkaaslsGGerrrveiaralaaePkfilldePfagvdPiavsdikklikllkergiGvlitd 192
v +d + + ++++l++l++ + + +++ +++ lsGG+++r+ iar++ +P++++lde +++d ++ ++i+ ++ l + + i+
MMSYN1_0371 477 YVKPSATDeeIILACKKAELHDLVTTWpeQYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIAH 574
**87655422778899999*****987557889*******************************************************9999988864 PP
TIGR04406 193 hnvretldivdrayivs.eGkvlaeGsaeeivan 225
t+ vd+ +++ + +++ G+ +e+v++
MMSYN1_0371 575 -RL-STIRNVDQIIVLApKKGIIQIGTFKELVKK 606
.33.455556666555513346677777777765 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 67.1 0.0 4.9e-21 3.6e-19 5 187 .. 382 572 .. 378 606 .. 0.78
Alignments for each domain:
== domain 1 score: 67.1 bits; conditional E-value: 4.9e-21
TIGR03410 5 nlevaYg...esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelg 99
n++ +Y e +l + +l +ekg+ a +G+ g+Gk+t+ k l+ ++ +sGe+ ++++ k + i+yv q +++ tv +nl+ +
MMSYN1_0371 382 NVNFSYPdkpENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKDVFLPSYLNHIGYVEQDPSVLL-GTVFDNLRYV 478
6666664222467999****************************************9988744444445556678******999875.59******99 PP
TIGR03410 100 lealkkk......ekkipeeiyelFPv.lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaill 187
+++++ +k+ +++ + +P +++l rg LsGGq+q l iaR +++P +l+LDe t + + kei++ ++el + +i +
MMSYN1_0371 479 KPSATDEeiilacKKAELHDLVTTWPEqYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQG-RTSITI 572
88777765777765666667777788526788999*************************************************9874.333333 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 67.0 0.0 5.5e-21 4e-19 24 222 .. 407 606 .. 396 614 .. 0.83
Alignments for each domain:
== domain 1 score: 67.0 bits; conditional E-value: 5.5e-21
TIGR02142 24 gvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeer..riseekvielL 119
a G+ G+Gk+++ +l+ p++ge+ +++++ k ++lp ++gyv q+ ++ +v +nLrY +a+ ee +++++ +l+
MMSYN1_0371 407 KSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNIN---IKDVFLPSYLNHIGYVEQDPSVLL-GTVFDNLRYVKPSATDEEIilACKKAELHDLV 500
456899*****************************985...578*****************9886.489******99888888752234678888888 PP
TIGR02142 120 gi.....ehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvka 212
+ + +l + LsGG kqR i+R L +P++L++De +aLD+ kei Le+l + + + ++H l+ + + + +v+ + +
MMSYN1_0371 501 TTwpeqyNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRT--SITIAHRLSTIRNVDQIIVLAPKKGIIQ 596
6422222779999999***********************************************98654..57899****9988766555555555677 PP
TIGR02142 213 agkleevlas 222
+g+ +e++++
MMSYN1_0371 597 IGTFKELVKK 606
7777777665 PP
>> TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 66.1 0.0 8.9e-21 6.6e-19 20 231 .. 392 617 .. 375 623 .] 0.80
Alignments for each domain:
== domain 1 score: 66.1 bits; conditional E-value: 8.9e-21
TIGR03258 20 arvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadr.dl..thlppykrnlallvqnyalfphlkveenvafGlrarkqskal 114
+v+l ++ l +e G+ a +G++G+Gk+t+ +++ f + G +l+ d+ ++ lp y ++ + q+ +++ +v++n+ + +
MMSYN1_0371 392 ENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNiNIkdVFLPSYLNHIGYVEQDPSVLL-GTVFDNLRYVKPSAT----- 483
5899********************************************99633322479*************98875.59***9766543333..... PP
TIGR03258 115 iaervadalklvqlsdaaarlpaq...........lsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltv...lyvth 198
+e + a k +l d + +p+q lsGGq+qr+ +ar + +pd+l+lde sald + ++++ +l+ l + +t+ l
MMSYN1_0371 484 -DEEIILACKKAELHDLVTTWPEQyntilgergfiLSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIahrLSTIR 580
.45556666666666666666666555555556669***********************************************999999944345667 PP
TIGR03258 199 drdealvladkillmkeGs....lialGetralydap 231
+ d+ +vla k ++++ G+ + + Ge ++ly+a
MMSYN1_0371 581 NVDQIIVLAPKKGIIQIGTfkelVKKPGEFKDLYEAG 617
8899999****99999997222234458888888876 PP
>> TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.9 0.4 2.6e-20 1.9e-18 13 196 .. 393 588 .. 378 615 .. 0.73
Alignments for each domain:
== domain 1 score: 64.9 bits; conditional E-value: 2.6e-20
TIGR03740 13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtr.....kdlkkiGsliesPalyenltarenlkvr...t....lll 98
+ ++ n +l ++k + y+++G GaGkst+ kll + +tsGe+l++++ + + l++iG + ++P++ t +nl+ + + ++l
MMSYN1_0371 393 NVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKdvflpSYLNHIGYVEQDPSVLL-GTVFDNLRYVkpsAtdeeIIL 489
56899*****************************************98754333111226799***9999998764.477888875412221111345 PP
TIGR03740 99 glpesrieevlkiv..dlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhi 194
+ +++++++++++ + +++ + +s G kqrl ia +l++P++lilde t ld + +e++ ++ + +G t i +h ls ++++ i
MMSYN1_0371 490 ACKKAELHDLVTTWpeQYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELM-QGRTSITIAHRLSTIRNVDQII 586
5666777776666521334444556666788*************************************9999997.5777777789999998765544 PP
TIGR03740 195 Gi 196
+
MMSYN1_0371 587 VL 588
22 PP
>> TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.1 0.0 8.5e-09 6.2e-07 5 66 .. 381 441 .. 378 462 .. 0.89
2 ! 35.2 0.0 2.8e-11 2e-09 141 214 .. 517 588 .. 500 594 .. 0.88
Alignments for each domain:
== domain 1 score: 27.1 bits; conditional E-value: 8.5e-09
TIGR02211 5 enltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkG 66
+n++ sy ++ + +l + +l +ekg++ a vG++G+Gkst+ ll + +ptsGevl++
MMSYN1_0371 381 KNVNFSYPDKPE-NVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLIND 441
567777776554.569******************************************9985 PP
== domain 2 score: 35.2 bits; conditional E-value: 2.8e-11
TIGR02211 141 elsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlel 214
lsGG++qr iar ++++P++++ de t+ ld+ k+i l+el + +t+ + ++h l+ ++++d+ + l
MMSYN1_0371 517 ILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQG-RTS-ITIAHRLSTIRNVDQIIVL 588
69********************************************9764.455.5678999999999888766 PP
>> TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 60.0 0.3 7.4e-19 5.5e-17 11 214 .. 398 606 .. 392 613 .. 0.87
Alignments for each domain:
== domain 1 score: 60.0 bits; conditional E-value: 7.4e-19
TIGR01188 11 gvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepd..evRrsigvvpqkasvdedLtarenlellgelyglpkkeaeerae 106
+ nl +e+g+ ++++G GAGK+t+ k+L P+sG++ ++ +++ + ++ig v q+ sv t +nl + ++ + + +
MMSYN1_0371 398 NFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKDVFlpSYLNHIGYVEQDPSVLLG-TVFDNLRYVKPSATDEEIILACKKA 494
678999************************************99888888655577899*********9765.889***9999988889999999999 PP
TIGR01188 107 ellelvelkeaadkkv.kt....ysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidk 199
el +lv + + +++ ++ +sgG+++rl +a+ ++++P++l LDE t+ LD ++i +eel + g t + +h l + ++ + + + k
MMSYN1_0371 495 ELHDLVTTWPEQYNTIlGErgfiLSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQ-GRTSITIAHRLSTIRNVDQIIVLAPK 591
******998776655523233338********************************************986.66777789****99998777888889 PP
TIGR01188 200 GkiiaedtpeeLKer 214
ii ++t +eL ++
MMSYN1_0371 592 KGIIQIGTFKELVKK 606
99*********9765 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 58.5 0.0 1.9e-18 1.4e-16 5 183 .. 391 573 .. 387 578 .. 0.79
Alignments for each domain:
== domain 1 score: 58.5 bits; conditional E-value: 1.9e-18
TIGR01166 5 ae..vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgpln.... 96
+e +l + nl +e+g++ a++G+ GaGkst+ + l P+sG+vl++ ++++ + l + +++++v qdp ++ +v++++ +
MMSYN1_0371 391 PEnvILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLIN-DNINIKDVFLPSYLNHIGYVEQDPS--VLLGTVFDNLRYVKPSatde 485
44327999****************************************98.579999999**************96..67788888887754430111 PP
TIGR01166 97 ...lGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvis 183
l ++ae++ v ++ + + +lsgG+k+r+ ia + +pd+l+lde t+ ld ++++ + l++l + +++ i+
MMSYN1_0371 486 eiiLACKKAELHDLVTTWPEQYN--TILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIA 573
11145555555555554444333..222334568**********************************************9876666665 PP
>> TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.2 0.0 1.3e-18 9.4e-17 19 226 .. 395 607 .. 378 612 .. 0.83
Alignments for each domain:
== domain 1 score: 59.2 bits; conditional E-value: 1.3e-18
TIGR03265 19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggr.ditr..lppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevae 113
+l + +l ++kg +++G G Gk+t+ +++ + ++++G++l++++ +i + lp+ G v q ++ tv +n+ y + ++ a
MMSYN1_0371 395 ILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNiNIKDvfLPSYLNHIGYVEQDPSVLLG-TVFDNLRYVKPSATDEEIILAC 491
67889999***********************************9998734543338999*********9877654.9*******87777766667788 PP
TIGR03265 114 rveelLelvgl.sgseekyPgq....lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDriv 206
+ +el +lv +++ + g lsGGq+qr+ +ar + P++L+LDe saLD v ++++ l++l + g t i ++h + D+i+
MMSYN1_0371 492 KKAELHDLVTTwPEQYNTILGErgfiLSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQ--GRTSITIAHRLST-IRNVDQII 586
899999999652444444433234449********************************************976..6688889998765.56667777 PP
TIGR03265 207 vm.nkgkieqvgtPeeiYeqP 226
v+ k i q+gt +e+ ++P
MMSYN1_0371 587 VLaPKKGIIQIGTFKELVKKP 607
6615788**********9999 PP
>> TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.1 0.1 1.5e-18 1.1e-16 20 220 .. 398 604 .. 382 613 .. 0.86
Alignments for each domain:
== domain 1 score: 59.1 bits; conditional E-value: 1.5e-18
TIGR03522 20 evsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsl..evrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrve 115
+ + ekG+ f+G GaGkst+ k+l + ++sG v ++++ +k+ ++iGy+ e +P l v + l++ ++ l + +
MMSYN1_0371 398 NFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKDVFlpSYLNHIGYV-EQDPSVLLGTVFDNLRYVKPSATDEEIILACKKA 494
5566789************************************9999998762245689***8.6677777777888888888877778888888999 PP
TIGR03522 116 elielvGlkaeqhkki.ga....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkG 208
el +lv +eq+ i g+ ls G +qr +a+ +l +P++lilde t+ ld ei++ ++e+ + +t i +h + ++ + + +++ k
MMSYN1_0371 495 ELHDLVTTWPEQYNTIlGErgfiLSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIAHRLSTIRNVDQIIVLAPKK 592
99999999*****99843244559*******************************99999**************************997777777777 PP
TIGR03522 209 kivadkkleelk 220
i+ + +el+
MMSYN1_0371 593 GIIQIGTFKELV 604
777777777765 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.4 0.0 6.5e-18 4.8e-16 32 243 .. 387 591 .. 355 609 .. 0.82
Alignments for each domain:
== domain 1 score: 56.4 bits; conditional E-value: 6.5e-18
TIGR00955 32 arkkpekellknvsGvaksGellAvlGsSGaGKtTLlnal.afrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrl 128
kpe +l n v+++G+ A +G GaGK+T+ + l f++++ +v + +n + v + +yv+qd + tv ++L +
MMSYN1_0371 387 YPDKPENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLlRFYDPTSGEVLINDNINIKDVFLPSYLNHIGYVEQDPS-VLLGTVFDNLRYVKPSAT 483
345599999**************************99875267888877777778888899999999999****99853.334489************ PP
TIGR00955 129 krrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQP 226
++++ k++ ++++++ + +t+ g g lSgG+++Rl +a l++P +L++DE Ts LD + +++ L++l q g+t i+ H
MMSYN1_0371 484 DEEIILACKKAELHDLVTTW--PEQYNTILGERGF--ILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQ-GRTSITIAHRL 576
****************9976..6789*****7775..9**********************************************87.66677888986 PP
TIGR00955 227 sselfelfdkiillaeG 243
s ++ d+ii+la
MMSYN1_0371 577 ST--IRNVDQIIVLAPK 591
64..6889999999843 PP
>> TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.8 0.0 4.1e-08 3e-06 24 75 .. 396 447 .. 388 462 .. 0.89
2 ! 29.3 0.1 1.7e-09 1.3e-07 150 210 .. 518 577 .. 512 591 .. 0.81
Alignments for each domain:
== domain 1 score: 24.8 bits; conditional E-value: 4.1e-08
TIGR02324 24 lkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivd 75
l + +l +e+G+ a+ G++GaGkst+ k l + Y p sg++l++ + +i d
MMSYN1_0371 396 LPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKD 447
56788999************************************99877765 PP
== domain 2 score: 29.3 bits; conditional E-value: 1.7e-09
TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdee 210
sGG kqR+ iar ++++ iL+Lde t++Ld+ k + ++e+ +g + i+i h +
MMSYN1_0371 518 LSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEEL-MQGRTSITIAHRLS 577
69***************999*************9999887777776.56777789999643 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 55.4 0.0 2.1e-17 1.6e-15 18 230 .. 396 604 .. 389 614 .. 0.84
Alignments for each domain:
== domain 1 score: 55.4 bits; conditional E-value: 2.1e-17
TIGR03411 18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk.dltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfa 114
l +++l +e+g+ + +G GaGk+t+ ++ p++G+vl++++ +++ + + + ig q psv+ tv++nl+ + + +l a
MMSYN1_0371 396 LPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNiNIKDVFLPSYLN-HIGYVEQDPSVLL-GTVFDNLRYVKPSATDEEIIL-A 490
56899*****************************************98998888777665.5999*******97.59*****98777666655555.3 PP
TIGR03411 115 rlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekv 212
++e ++ +++ e + ++ ++ Ls Gqkq+L i+ +++++p++l+lDe ++ + + ++++ l+el + r+ + + h ++ +r++++ +
MMSYN1_0371 491 CKKAELHDLVTTWPE--QYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIAHRLSTIRNVDQII 586
334444555555444..456677888999*********************************9999999999**********************9988 PP
TIGR03411 213 tvlheGkvlaeGsldevq 230
+ ++ G+++e+
MMSYN1_0371 587 VLAPKKGIIQIGTFKELV 604
776677788888887755 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 54.6 0.0 3.5e-17 2.6e-15 12 181 .. 392 571 .. 385 586 .. 0.76
Alignments for each domain:
== domain 1 score: 54.6 bits; conditional E-value: 3.5e-17
TIGR01189 12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqr..delaeellylgHldglKaeLsalEnLkfyaallqseqkt 107
e+v+l + ++ l G+ + +G+ G+GK+t+ ++l p+sGev +nd+ + +++ +++ y+ +++ ++ +nL++ + ++e+
MMSYN1_0371 392 ENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKDVflPSYLNHIGYVEQDPSVL-LGTVFDNLRYVKPSATDEE-- 486
678999999****************************************765444431145555666666555553.34899*******9999777.. PP
TIGR01189 108 veealekvgLsgledlpvaq...........LsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivl 181
+ a +k++L++l + +q Ls Gqk+Rl +ar++l++ + iLDE t alD+ + ++++l++ ++ ++
MMSYN1_0371 487 IILACKKAELHDLVTTWPEQyntilgergfiLSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSIT 571
77777777777764432221122222234449**********************************9999999998765444333 PP
>> TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 53.7 0.1 4.2e-17 3.1e-15 303 518 .. 399 606 .. 381 612 .. 0.82
Alignments for each domain:
== domain 1 score: 53.7 bits; conditional E-value: 4.2e-17
TIGR03269 303 vslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpde..l 398
+l +++++ + vG++GaGk+t+sk+l+ +ptsGev + + +++ + ++iG + q+ ++ tv++nl +e l
MMSYN1_0371 399 FNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLIN---DNINIKDVF---LPSYLNHIGYVEQDPSVLL-GTVFDNLRYVKPSATDEEiiL 489
5667788899****************************9874...556665554...2345679*******99875.79*****86655544444337 PP
TIGR03269 399 akrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareel..eetfvivshdmdfvlev 494
a +ka ++ + e+ + il ls G++ r+ +a++++k+p i+ilde t ++d + +++++ + eel ++t + ++h + +++v
MMSYN1_0371 490 ACKKAELHDLVTTWPEQ-YNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKL----EELmqGRTSITIAHRLSTIRNV 582
88998665555566655.5789***************************************99877776655....444125799************* PP
TIGR03269 495 cdraalmrdGkivkiGdpeeivee 518
+ + l + i++iG +e+v++
MMSYN1_0371 583 DQIIVLAPKKGIIQIGTFKELVKK 606
99999999999*********9976 PP
>> TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.4 4.4 3.6 2.7e+02 62 176 .. 17 139 .. 2 196 .. 0.68
2 ! 55.0 0.1 1.6e-17 1.2e-15 409 644 .. 331 580 .. 324 595 .. 0.78
Alignments for each domain:
== domain 1 score: -2.4 bits; conditional E-value: 3.6
TIGR00954 62 lekkkkkalvdkeflgklkvllkiliprvfckellllilqavlLviRtllsvyvakldgqlv.....ksivrrsprsFakellkwlliavpaslvnsl 154
e k++++++++ +++ ++v+ k + +++ ++lli+ +++ + l + + +l+ ++ ++ + + s++ +l w++i+v +++ +
MMSYN1_0371 17 EEIKADRKSFNRGRKSFINVIWKHMKINKKW-AIGLLITAIFSALFAALNPLLMQQLQFAVEfekthQNFSNSWGLSWKVILAIWIVILVITAILTYI 113
4556778999999999999999987555554.599999999999999999999999988776111113344444556666677888777654443333 PP
TIGR00954 155 iky....lekelalsfrerltkylys 176
++ l k++++s+r++lt+ l
MMSYN1_0371 114 ANLfgneLGKKIEISLRNELTRKLIT 139
33300013456666666666665543 PP
== domain 2 score: 55.0 bits; conditional E-value: 1.6e-17
TIGR00954 409 qvlddvkslnfkrprveekesaeee..srkselvagrg.kveaqdngikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilge 501
q+l ++ ++ + +++ ++++ + + ++ +g ++++ + + f n++ P +v++++ ++ +++G++ +G G GKs + ++l
MMSYN1_0371 331 QLLRAIIGMVQASTSAQRIDEITDAtqLINNHSLDKKGiRIHKIEGNLVFKNVNFSYPdkPENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLR 428
555555555555555555444444323344444444442688999999**********65578999******************************99 PP
TIGR00954 502 lW.Pvyg...........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedller..eggwdavqdWkdvLs 585
++ P+ g + +++ yv q P + lgt+ d + Y + +d++++ ++ +L+dl++ e ++ + +Ls
MMSYN1_0371 429 FYdPTSGevlindninikDVFLPSYLNHIGYVEQDPSVLLGTVFDNLRYVKP-------SATDEEIILACKKAELHDLVTTwpEQYNTILGERGFILS 519
9868888888887776643333344578899999999999999999888544.......5689999999999999999987323334555677789** PP
TIGR00954 586 gGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakev..gitllsvshrksLwk 644
gG+kqR+ +AR+f P +LDE+tsA+ vE+++ ++ e+ g t ++++hr s ++
MMSYN1_0371 520 GGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELmqGRTSITIAHRLSTIR 580
**************************************99998533679999***998776 PP
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 53.3 0.0 8.9e-17 6.5e-15 5 212 .. 381 586 .. 377 595 .. 0.76
Alignments for each domain:
== domain 1 score: 53.3 bits; conditional E-value: 8.9e-17
TIGR02982 5 relnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqn 102
+++n y ++ ++ +l + nl +e+g + G++G+Gk t+ l+ + +Ge+ ++ ++++ l +iGy+ q +l t+ +n
MMSYN1_0371 381 KNVNFSYP-DKPENVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVL--INDNINIKDVFLPSYLNHIGYVEQDPSVLL-GTVFDN 474
56676665.4567789******************************9777777777765..55556788888999999*******988764.477888 PP
TIGR02982 103 vrmale..lkeklsakeakakaeelleav..gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttil 196
+r e++ + +ka+ ++l+++ + l + lsgGqkqr+ iar + ++P++++ de t+ald+ +e+ l++l qg t++
MMSYN1_0371 475 LRYVKPsaTDEEIILACKKAELHDLVTTWpeQYNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELM--QGRTSI 570
8875540034455555556666666665411344466777788****************************************9999996..677778 PP
TIGR02982 197 lvthdnrildvadriv 212
++h + d+i+
MMSYN1_0371 571 TIAHRLSTIRNVDQII 586
8888655444445554 PP
>> TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.6 0.0 0.00019 0.014 15 63 .. 395 443 .. 387 483 .. 0.88
2 ! 38.5 0.1 2.3e-12 1.7e-10 147 240 .. 518 609 .. 512 613 .. 0.92
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 0.00019
TIGR03005 15 vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeq 63
+l +++l +++G+ a +G +G+Gksti ++l+ + G++ ++ ++
MMSYN1_0371 395 ILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNI 443
6889999**************************9999999999997655 PP
== domain 2 score: 38.5 bits; conditional E-value: 2.3e-12
TIGR03005 147 lsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpke 240
lsGGqkqr+ iar + +p +l++de+tsald + +e+ + l +l + + t + ++h++ r++ + +++ k i++ G +e+ +kp e
MMSYN1_0371 518 LSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGR--TSITIAHRLSTIRNVDQIIVLAPKKGIIQIGTFKELVKKPGE 609
9*********************************99**********9764..78889**********999999999999999**9999999965 PP
>> TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.5 0.5 2.5e-15 1.8e-13 3 187 .. 398 587 .. 396 611 .. 0.72
Alignments for each domain:
== domain 1 score: 48.5 bits; conditional E-value: 2.5e-15
TIGR01184 3 dvdleikkgefislighsgcgkstllnliaglekptsgavileg....keitepgpdrmv..vfqnysllpwltvrenialav.....davlrdlsks 89
+ +l ++kg+ +++g +g gkst+ l+ + ptsg v ++ k++ p + v q+ s+l tv +n+ +++ +k+
MMSYN1_0371 398 NFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDniniKDVFLPSYLNHIgyVEQDPSVL-LGTVFDNLRYVKpsatdEEIILACKKA 494
78999***********************************876522225666676544432266777777.579999987644101112334444555 PP
TIGR01184 90 erreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvm 187
e +++v e ++ r lsgg kqr+ iar + p++l+lde ald + +e+q kl ++++ + t + ++h + d++++
MMSYN1_0371 495 ELHDLVTTWPEQ--YNTILGERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGR--TSITIAHRLSTIRN-VDQIIV 587
555555555443..44556677888*********************************************99865..66667776543332.233333 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.3 0.0 1.2e-15 8.7e-14 16 212 .. 395 590 .. 388 614 .. 0.78
Alignments for each domain:
== domain 1 score: 49.3 bits; conditional E-value: 1.2e-15
TIGR03873 16 ivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdl.agadlkalsrrararrvalveqdsdaevp..lsvrdvvalGriPhrslfaad 110
i+ + ++ +G+ + +G G+Gkst+ +ll p+ Gev + + ++k + + ++ veqd + + + v + ++a +
MMSYN1_0371 395 ILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLInDNINIKDVFLPSYLNHIGYVEQDPSVLLGtvFDNLRYVKPSATDEEIILACK 492
555666667789999****************************7626789******************987544300233334555556666667777 PP
TIGR03873 111 sdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvv 208
+e +++v + + l +r + lsGG++qr +ar + ++P +l+lde t ld e+ a + el +g t + h l+ ++ +d+++
MMSYN1_0371 493 KAELHDLVTTWP-EQYNTILGERGF-ILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEEL-MQGRTSITIAHRLST-IRNVDQII 586
766666665543.334456777765.69*********************************************.6777777778**986.67789999 PP
TIGR03873 209 vldg 212
vl+
MMSYN1_0371 587 VLAP 590
9974 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.3 0.1 2.2e-15 1.6e-13 9 210 .. 382 590 .. 377 605 .. 0.77
Alignments for each domain:
== domain 1 score: 48.3 bits; conditional E-value: 2.2e-15
TIGR01288 9 gvsksygdk...vvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlar..akigvvpqfdnldreftvrenllvf 101
+v+ sy dk v++ ++ + + +g+ + ++g gagksti++l+l + p g++ + ++ + l +ig v q ++ + tv +nl
MMSYN1_0371 382 NVNFSYPDKpenVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKDVFLPSylNHIGYVEQDPSV-LLGTVFDNL--- 475
78888887666699********************************************99999988887642279****995555.567999998... PP
TIGR01288 102 gryfglstreieevip....sllefarl.eskadv....rvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktill 190
ry + s+ + e ++ l ++ + ++ r lsgg k+rl +ar ++++p++lilde t+ ld + i +l l+ +g+t +
MMSYN1_0371 476 -RYVKPSATDEEIILAckkaELHDLVTTwPEQYNTilgeRGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELM-QGRTSIT 571
.777777776665554111134444332122333311115667*******************************************9976.7999888 PP
TIGR01288 191 tthlmeeaerlcdrlcvlea 210
+h + r +d++ vl
MMSYN1_0371 572 IAHRLST-IRNVDQIIVLAP 590
8887764.466777777765 PP
>> TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.6 0.1 6.5 4.7e+02 192 204 .. 61 73 .. 56 78 .. 0.90
2 ? -2.0 0.0 4.2 3.1e+02 65 112 .. 331 380 .. 316 385 .. 0.78
3 ? 5.1 0.0 0.029 2.1 42 92 .. 398 448 .. 390 455 .. 0.88
4 ! 41.7 0.1 2.2e-13 1.6e-11 165 257 .. 518 608 .. 488 618 .. 0.91
Alignments for each domain:
== domain 1 score: -2.6 bits; conditional E-value: 6.5
TIGR03415 192 fsaldPliraklq 204
f+al+Pl+ ++lq
MMSYN1_0371 61 FAALNPLLMQQLQ 73
99**********9 PP
== domain 2 score: -2.0 bits; conditional E-value: 4.2
TIGR03415 65 sllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrv..smvf 112
llra+ g+ + s ++ + + ++++ ++ + + +r +++ +vf
MMSYN1_0371 331 QLLRAIIGMVQASTSAQRIDEITDATQLINNHSLDKKGIRIHKIegNLVF 380
58999999999998888888888888888888888888888887333666 PP
== domain 3 score: 5.1 bits; conditional E-value: 0.029
TIGR03415 42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdv 92
+ +l +e+G ++G +G+Gks++ + + ++ + G+vl++d+ + dv
MMSYN1_0371 398 NFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKDV 448
77899**********************999999999999999998777766 PP
== domain 4 score: 41.7 bits; conditional E-value: 2.2e-13
TIGR03415 165 lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPa 257
lsGG +qr+ +ar f + dil++de sald ++ +++q l el + +t + ++h l + + i + + i+q+gt +e+v+kP
MMSYN1_0371 518 LSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQ--GRTSITIAHRLSTIRNVDQIIVLAPKKGIIQIGTFKELVKKPG 608
9******************************************99976..5899999*****9999999999999999*************96 PP
>> TIGR01978 sufC: FeS assembly ATPase SufC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.2 0.0 4.3e-06 0.00032 13 63 .. 393 441 .. 378 453 .. 0.82
2 ! 27.2 0.1 7.6e-09 5.6e-07 144 219 .. 515 589 .. 475 607 .. 0.79
Alignments for each domain:
== domain 1 score: 18.2 bits; conditional E-value: 4.3e-06
TIGR01978 13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkg 63
+ iL ++nl ++kG+ +a +G+ G+Gkst+sk l y tsGe+ +++
MMSYN1_0371 393 NVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLR--FYDPTSGEVLIND 441
569*****************************9975..4556777776655 PP
== domain 2 score: 27.2 bits; conditional E-value: 7.6e-09
TIGR01978 144 Gf..sGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvll 219
Gf sGG k+r i ++ l +P++ iLDe+ s lD k + +++++l + ++++ i+h ++++ d++ vl+
MMSYN1_0371 515 GFilSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSIT-IAHRLSTIRNV--DQIIVLA 589
65559******************************9999**********99888765.56655544444..5555554 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.3 0.0 1.1e-13 7.9e-12 3 187 .. 403 590 .. 401 614 .. 0.79
Alignments for each domain:
== domain 1 score: 43.3 bits; conditional E-value: 1.1e-13
TIGR03771 3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkg......rreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaav 94
++kG+ +++G GaGk+t+ + +l + ++ G+v ++ + + k +iGyv q d + v + +l k + + v
MMSYN1_0371 403 LEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKDvflpsyLNHIGYVEQDPSVLLGTVFDNLRYVKPSATDEEIILACKKAELHDLV 500
6899999*****************************999877664222222579**********9999999999998887776655555444444455 PP
TIGR03771 95 adalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvlln 187
+ e t l +r lsGGq+qr+++ar + +p +l+lde + ld+ ++++ +eel + t+i +h l+ ++ + +vl
MMSYN1_0371 501 TTWPE-QYNTILGERGF-ILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSIT-IAHRLSTIRNVDQIIVLAP 590
54444.45578999986.5**********************************************99887776.5799987666655555544 PP
>> TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.5 0.0 7.7e-06 0.00057 319 388 .. 376 446 .. 340 452 .. 0.78
2 ! 26.0 0.0 1.1e-08 7.9e-07 162 223 .. 518 581 .. 513 600 .. 0.80
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 7.7e-06
TIGR03719 319 Gdkvievenlskafgdk...lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvkla 388
G+ v ++n++ ++ dk +++ ++++ l kg +G GaGkst+ kl+ +p sGe+ i + +++
MMSYN1_0371 376 GNLV--FKNVNFSYPDKpenVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIK 446
5555..455666666543338999*****************************************99999886 PP
== domain 2 score: 26.0 bits; conditional E-value: 1.1e-08
TIGR03719 162 lsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey.kG.tvvavthdryfldn 223
lsGG+k+r+ ++r++l++Pd+l+lde t ld + ++ l+e +G t + ++h + n
MMSYN1_0371 518 LSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELmQGrTSITIAHRLSTIRN 581
9*******************************88777777777775233356666676555555 PP
>> TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.4 0.0 0.0021 0.15 17 53 .. 396 432 .. 388 448 .. 0.83
2 ! 28.5 0.1 1.7e-09 1.2e-07 404 469 .. 518 582 .. 482 599 .. 0.87
Alignments for each domain:
== domain 1 score: 8.4 bits; conditional E-value: 0.0021
TIGR02633 17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyph 53
l n +l l+ G+ ++ G+ GaGkst+ k+l y
MMSYN1_0371 396 LPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDP 432
6788999************************988854 PP
== domain 2 score: 28.5 bits; conditional E-value: 1.7e-09
TIGR02633 404 lsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGl 469
lsGG++q+ v+a+++l np +lilde t +d ei +++l+q G + i ++ l+ + +
MMSYN1_0371 518 LSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQ-GRTSITIAHRLSTIRNV 582
9***************************************99999987.55556677777766554 PP
>> TIGR00956 3a01205: pleiotropic drug resistance family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.8 0.0 1.1e-11 8.4e-10 737 963 .. 351 577 .. 335 605 .. 0.74
Alignments for each domain:
== domain 1 score: 34.8 bits; conditional E-value: 1.1e-11
TIGR00956 737 dltdeseevneeveeekesg....eeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv..ttGvitegdrlvngr 828
++td ++ +n+++ ++k++ e ++++++ + k e v+L + + +++ Gk A +G+ GAGk t+ L t G + +d +
MMSYN1_0371 351 EITDATQLINNHSLDKKGIRihkiEGNLVFKNVNFSYPDKPE-NVILPNFNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYdpTSGEVLINDNINIKD 447
344444445555555544224344555788999999997665.69***************************98888754422556555555555555 PP
TIGR00956 829 kldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFl 926
s+ iGYv+q D + tv + Lr+ +e+ + k+ +++ e+y + ++G+ G L+ q++rl i+ +P+ +l l
MMSYN1_0371 448 VFLPSYLNHIGYVEQ-DPSVLLGTVFDNLRYVKPSATDEEIILACKKAELHDLVTTW-PEQY-NTILGERGFILSGGQKQRLVIARMFLKNPD-ILIL 541
66679999*****98.5677789********99999999998887776555554433.2455.78***************************5.6679 PP
TIGR00956 927 DePtsGLDsqtawsivkllrkladaGqailCtiHqPs 963
De ts LD i l +l + G++ + H s
MMSYN1_0371 542 DEATSALDNVVEKEIQAKLEELMQ-GRTSITIAHRLS 577
********9998888888888764.666666666655 PP
>> TIGR01257 rim_protein: rim ABC transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.2 0.0 2.7e-09 2e-07 949 1124 .. 399 580 .. 379 605 .. 0.77
Alignments for each domain:
== domain 1 score: 26.2 bits; conditional E-value: 2.7e-09
TIGR01257 949 lnitfyenqitaflghngagktttlsiltgllpptsgtvlvggk.di.etnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlem 1042
+n+ + + + af+g+ gagk+t +l + ptsg vl+ + +i + l + + +g + q ++ tv + + y + e
MMSYN1_0371 399 FNLVLEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNiNIkDVFLPSYLNHIGYVEQDPSVLL-GTVFDNL-RYVKPSATDEEIILACK 492
56777777889******************************865244235678888999*9999876553.3666664.56555444433333345 PP
TIGR01257 1043 eamled..tglhhkrn....eeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdead 1124
+a l d t + n e lsgg +++l +a f+ + +++lde ts +d + i l grt i +h +
MMSYN1_0371 493 KAELHDlvTTWPEQYNtilgERGFILSGGQKQRLVIARMFLKNPDILILDEATSALDNVVEKEIQAKLEELMQGRTSITIAHRLSTIR 580
6777773333333444223267778*****************************************************9999886554 PP
>> TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.9 0.0 6 4.4e+02 94 134 .. 122 161 .. 117 169 .. 0.71
2 ! 21.8 0.1 3.6e-07 2.6e-05 24 221 .. 403 599 .. 392 610 .. 0.69
Alignments for each domain:
== domain 1 score: -1.9 bits; conditional E-value: 6
TIGR02323 94 GlrmevsaGanigerllavgarhyGkiraaakwlekveida 134
G ++e+s +++ +l+++ hy +++ + l kv d+
MMSYN1_0371 122 GKKIEISLRNELTRKLITT-DIHYYSNKKTGEILTKVVSDT 161
6677777777776666655.668888888999999987766 PP
== domain 2 score: 21.8 bits; conditional E-value: 3.6e-07
TIGR02323 24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnpr.GlrmevsaGanigerllavgarhyGki 120
l G+ + vG++G+Gkst+ k l +++Gev ++ + ++++ s + + + ++ lr v a e +la +
MMSYN1_0371 403 LEKGKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKDVFLPSYLNHIGYVEQDPSVLLGTVFdNLR-YVKPSATDEEIILACKK--AELH 497
67799999******************9***********999999999877666655555554444444442333.34555554555555533..3333 PP
TIGR02323 121 raaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqG 214
++w e+ + + +sGG +qrl iar ++ +p ++++ e t l v + + l +l++ g + i ++h l+ +r + q +++ +
MMSYN1_0371 498 DLVTTWPEQYNTIL-GERGFILSGGQKQRLVIARMFLKNPDILILdEATSALDNVVEKEIqaKLEELMQ--GRTSITIAHrLSTIRNVDQIIVLAPKK 592
44455888876555.3467789******************988887******55444433245566665..556677777788888887665555555 PP
TIGR02323 215 rvvesGl 221
+++ G
MMSYN1_0371 593 GIIQIGT 599
5555555 PP
>> TIGR00630 uvra: excinuclease ABC subunit A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.5 0.1 4.5e-08 3.3e-06 822 908 .. 511 593 .. 501 600 .. 0.85
Alignments for each domain:
== domain 1 score: 23.5 bits; conditional E-value: 4.5e-08
TIGR00630 822 lGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidlGPeGG 908
lG+ LsGG qr+ +a+ + k+ + ilDe t L k++ l++l+ +G t + i h l i++ D ii l P+ G
MMSYN1_0371 511 LGERGFILSGGQKQRLVIARMFLKN---PDILILDEATSALDNVVEKEIQAKLEELM-QGRTSITIAHRLSTIRNVDQIIVLAPKKG 593
8999999************999875...679*********98654444555566665.8*************************877 PP
>> TIGR03696 Rhs_assc_core: RHS repeat-associated core domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 0.0 0.00013 0.0099 14 68 .. 406 465 .. 398 468 .. 0.92
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 0.00013
TIGR03696 14 enplrftGqeldeetglyyngaRyYdpelgrFlspDpiglagg.....lnlYaYvennPv 68
+++ f Gq ++ + ++ R+Ydp+ g l +D i+ ++ ln+ Yve +P
MMSYN1_0371 406 GKSYAFVGQTGAGKSTISKLLLRFYDPTSGEVLINDNINIKDVflpsyLNHIGYVEQDPS 465
57899********************************99999999999*********995 PP
>> TIGR03499 FlhF: flagellar biosynthesis protein FlhF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.8 0.0 0.00027 0.02 193 218 .. 401 425 .. 392 434 .. 0.81
Alignments for each domain:
== domain 1 score: 12.8 bits; conditional E-value: 0.00027
TIGR03499 193 eilekggviaLvGptGvGKTTTlAKL 218
+lekg+ +a+vG+tG GK T + KL
MMSYN1_0371 401 LVLEKGKSYAFVGQTGAGKST-ISKL 425
578999*************86.6666 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (623 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 498 (0.110963); expected 89.8 (0.02)
Passed bias filter: 184 (0.0409982); expected 89.8 (0.02)
Passed Vit filter: 74 (0.0164884); expected 4.5 (0.001)
Passed Fwd filter: 61 (0.0135918); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 61 [number of targets reported over threshold]
# CPU time: 0.83u 0.40s 00:00:01.23 Elapsed: 00:00:00.57
# Mc/sec: 1542.51
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0371 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0372 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0372.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0372/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0372 [L=617]
Description: ABC transporter, ATP-binding protein 2=Generic Efflux
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-86 289.6 3.7 1.4e-86 289.3 3.7 1.0 1 TIGR00958 3a01208: antigen peptide transporter 2
2.8e-84 281.7 0.1 3.7e-84 281.4 0.1 1.0 1 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
1.1e-78 263.0 1.5 1.3e-78 262.9 1.5 1.0 1 TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding p
1.5e-66 223.4 0.0 6.6e-66 221.3 0.0 1.8 1 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
4.4e-66 221.5 3.4 6.3e-66 221.0 3.4 1.1 1 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
1.6e-65 219.6 0.9 1.9e-65 219.3 0.9 1.0 1 TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC trans
1.7e-64 216.5 2.5 2.2e-64 216.1 2.5 1.0 1 TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC trans
8.9e-63 210.6 0.3 1.4e-62 210.0 0.3 1.3 1 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
2.5e-58 196.1 17.5 2.9e-58 195.9 17.5 1.0 1 TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
3.4e-54 182.3 0.0 4.4e-54 182.0 0.0 1.1 1 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
1.2e-52 177.3 0.5 2e-52 176.6 0.5 1.3 1 TIGR01192 chvA: glucan exporter ATP-binding protein
8.4e-48 161.1 0.9 1.2e-47 160.6 0.9 1.2 1 TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
9.2e-31 105.2 0.0 1.7e-30 104.3 0.0 1.4 1 TIGR04520 ECF_ATPase_1: energy-coupling factor transporter A
1.5e-30 103.4 2.8 1.8e-30 103.1 2.8 1.2 1 TIGR00957 MRP_assoc_pro: multi drug resistance-associated pr
1e-29 101.4 0.0 1.6e-29 100.8 0.0 1.3 1 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
1.8e-26 91.0 0.0 2.9e-26 90.3 0.0 1.3 1 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
3.1e-26 90.3 0.1 5.9e-26 89.4 0.1 1.4 1 TIGR01186 proV: glycine betaine/L-proline transport ATP bind
4.9e-25 86.2 0.0 1e-24 85.1 0.0 1.5 1 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
2.1e-24 83.1 0.0 2.1e-24 83.1 0.0 2.2 1 TIGR01271 CFTR_protein: cystic fibrosis transmembrane conduc
7.5e-21 72.7 0.0 1.2e-20 72.1 0.0 1.3 1 TIGR02673 FtsE: cell division ATP-binding protein FtsE
1.1e-19 68.8 0.0 1.7e-19 68.2 0.0 1.3 1 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
1.8e-19 67.9 0.0 2.9e-19 67.3 0.0 1.3 1 TIGR01187 potA: polyamine ABC transporter, ATP-binding prote
1.9e-19 68.0 0.0 4.2e-19 66.9 0.0 1.5 1 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
2.3e-19 67.9 0.0 5.7e-18 63.3 0.0 2.3 1 TIGR02769 nickel_nikE: nickel import ATP-binding protein Nik
6.5e-19 66.1 0.0 9.5e-19 65.6 0.0 1.2 1 TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-bi
9.6e-19 65.6 0.0 1.8e-18 64.7 0.0 1.4 1 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
1.4e-18 65.2 0.0 2.4e-18 64.4 0.0 1.3 1 TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit,
3.7e-18 63.6 0.0 7.9e-18 62.6 0.0 1.6 1 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
1.5e-17 61.6 0.0 2.9e-17 60.7 0.0 1.4 1 TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system
1.9e-17 61.5 0.0 2.9e-17 60.9 0.0 1.2 1 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
2.2e-17 61.0 0.0 3.5e-17 60.4 0.0 1.2 1 TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-bindin
5.1e-17 60.1 0.0 1e-16 59.1 0.0 1.5 1 TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding pr
5.5e-17 60.0 0.0 1.3e-16 58.8 0.0 1.6 1 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
1.1e-16 59.0 0.0 3.2e-16 57.5 0.0 1.8 1 TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-bi
1.9e-16 57.6 0.0 1.9e-16 57.6 0.0 2.5 3 TIGR00954 3a01203: peroxysomal long chain fatty acyl transpo
2.1e-16 58.1 0.0 3.6e-16 57.4 0.0 1.4 1 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
2.1e-16 58.2 0.0 5.2e-16 56.9 0.0 1.6 1 TIGR03740 galliderm_ABC: lantibiotic protection ABC transpor
1.6e-15 55.1 0.5 6.7e-15 53.1 0.5 1.8 1 TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP
2e-15 54.8 0.0 3.5e-15 54.0 0.0 1.2 1 TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transp
3.8e-15 53.7 0.0 1.6e-14 51.7 0.0 1.9 1 TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transport
4.2e-15 53.3 0.0 1.1e-14 51.9 0.0 1.7 1 TIGR00955 3a01204: pigment precursor permease
9.4e-15 52.8 1.0 1.5e-14 52.1 0.1 1.6 2 TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC tran
9.9e-15 52.7 0.0 1.9e-14 51.8 0.0 1.4 1 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
1.9e-14 51.3 0.0 5.3e-14 49.9 0.0 1.7 1 TIGR01288 nodI: nodulation ABC transporter NodI
6.9e-14 49.8 0.0 4.7e-13 47.1 0.0 2.0 1 TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein
9e-14 49.7 0.1 4.5e-13 47.4 0.0 2.1 2 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
1e-13 49.5 0.0 2e-13 48.5 0.0 1.4 1 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
2.3e-13 48.0 0.0 9.9e-13 45.9 0.0 1.9 1 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
5.3e-13 47.0 0.0 1.1e-12 46.0 0.0 1.5 1 TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding protei
8.6e-13 45.6 0.4 9.1e-12 42.2 0.4 2.0 1 TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system
1.2e-12 45.1 9.5 4.3e-12 43.3 9.5 1.7 1 TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
3.9e-11 40.8 0.4 1.2e-10 39.1 0.4 1.7 1 TIGR01978 sufC: FeS assembly ATPase SufC
6.7e-11 37.7 0.0 1e-10 37.1 0.0 1.2 1 TIGR01257 rim_protein: rim ABC transporter
7.9e-11 39.5 0.0 4.4e-09 33.7 0.1 2.2 2 TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-bindi
7.4e-10 36.0 0.0 6.5e-06 23.0 0.0 2.2 2 TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD f
2.7e-08 30.7 0.0 3e-06 23.9 0.1 2.2 2 TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protei
2.1e-07 26.9 0.0 3.6e-07 26.1 0.0 1.3 1 TIGR00956 3a01205: pleiotropic drug resistance family protei
6.4e-07 25.9 0.2 1.1e-06 25.1 0.2 1.3 1 TIGR00630 uvra: excinuclease ABC subunit A
2.9e-06 24.9 0.0 0.0054 14.2 0.0 2.4 2 TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein
5.3e-05 21.3 0.1 8.8e-05 20.6 0.1 1.3 1 TIGR03499 FlhF: flagellar biosynthesis protein FlhF
------ inclusion threshold ------
0.015 12.3 0.0 0.058 10.4 0.0 2.0 2 TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
Domain annotation for each model (and alignments):
>> TIGR00958 3a01208: antigen peptide transporter 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 289.3 3.7 1.9e-88 1.4e-86 145 710 .. 27 610 .. 3 611 .. 0.82
Alignments for each domain:
== domain 1 score: 289.3 bits; conditional E-value: 1.9e-88
TIGR00958 145 tadlllrLLkllkrdlkllllalv.llvlsvlgevliPkytgrvidtllqdks.....vealaka..iflltllslaSsllaglrgGsfeyamarinl 234
+ +l +r+ + ++ +ll ++v + l ++ ++P ++++vi+tl+++++ +l+++ ++++++ l + + + + + +a+i+
MMSYN1_0372 27 KFSLFIRMNVEIAKQNPLLFFGVVfFTSLDAIFSAMLPLFSSKVINTLVENNTqwlfnWMELNSTgwLYVIGINLLIIIICEYFTNFTVALYSAQIEV 124
334888887666667776666655055689999****************9998665434556555447778888888888888888888899999*** PP
TIGR00958 235 riredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekv.fgkvyqklsee 331
r +++k+l Qd++F+ + G++ Rl Dt+ ++ + + + l+ +l ++++i+m S +L ++ lal +l+a+ +g ++++ +
MMSYN1_0372 125 MQRLKILKALTDQDVDFYFDHVSGNILTRLVGDTQFLALGVQQFLTNLIYALSGSITAIIIM--YSQNLIMIATLALIYLLVANLFcIGFFIDMRRKL 220
***********************************999999999888888888888888888..5889999988888777777665145555555554 PP
TIGR00958 332 vq..eavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalay.alylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLY 426
+ + ++ + + + ++ ++Ee E++r +ek ++ + +k + +l++ t +++lli ++ +++ +q +++++ s++ L
MMSYN1_0372 221 ILafDVKRETDADMTDRINNISLIKASGTEEFEIKRLEEKNQNYEDGLTKFTYSSaLLNTSLTFVIQLLIPIIFIIIAVQYLTNSQSSNNLGAEIALI 318
431122333444467899************************99986665544440455556667888888888888888887777655544444455 PP
TIGR00958 427 qlqlgeavreLsevysellkav...GasekvFeyldRkPqlelsgtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKS 521
l+ + + + ++l +a a++++ e++d kP ++++ + + F ++sFsYP++p++ v+ +t e G++ a VG GsGK
MMSYN1_0372 319 FPLLSTLIGGIAILLPSLRSATaasNAANRISELTDPKPMIHSNLKGYKIDKIDSIVFDNISFSYPKKPERIVIPPTYLTFEKGKSYAFVGQTGSGKT 416
55566666677777777766551115678************9887655555667899***************************************** PP
TIGR00958 522 tvaallenlYqPtgGqvllDgk.plkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsql 618
t+a ll ++Y Pt G++l+ ++ +l+ ++ + +++ V+qEP++ g++ +Ni Y +++deev a k+a hdFi+ l+++y+t +g++G l
MMSYN1_0372 417 TIAKLLLRFYAPTDGKILINNEyNLNRINLPAYLDHIGYVEQEPQILYGTFLDNIKYSKFDATDEEVIKACKKAELHDFIMSLPDQYNTVLGQRGFIL 514
*******************98758************************************************************************** PP
TIGR00958 619 sgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkg..svvelGthkqLmekedvykql 710
sgGqkqr+ iAR +++P v+iLDeAtSALD ve+ +q+ ++ k+r + iahrL t++++d+i vl + +v+ Gt+++L+++++ +++l
MMSYN1_0372 515 SGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDklDELIKGRMCITIAHRLTTIKNVDHIYVLGANgtGIVQSGTFDELKKQPGHFRNL 610
***************************************9777889************************8755789************9999876 PP
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 281.4 0.1 5e-86 3.7e-84 68 571 .. 101 610 .. 46 614 .. 0.83
Alignments for each domain:
== domain 1 score: 281.4 bits; conditional E-value: 5e-86
TIGR02204 68 vlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltsl.v 164
l++ + + + v ++ r ++ + l + + f+ sg++l+rl dt+ l v l+ + l i a++++ s l +
MMSYN1_0372 101 LLIIIICEYFTNFTVALYSAQIEVMQRLKILKALTDQDVDFYFDHVSGNILTRLVGDTQFLALGVQQFLTNLIYALSGSITAIIIMY--SQNLIMIaT 196
34445566666677888888999999**********************************987666655544444444444554444..444444414 PP
TIGR02204 165 llavPlvllPillfgr..rvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavv.lv 259
l+ + l+++ ++++g +r++ + d ++ a ++ +++i ++a ++ee e +r +++ ++ ye + ++ ++ + l +++++v+ + ++
MMSYN1_0372 197 LALIYLLVANLFCIGFfiDMRRKLILAFDVKRETDADMTDRINNISLIKASGTEEFEIKRLEEK-NQNYEDGLTKFTYSSALLNTSLTFVIQLLIpII 293
667888899998888622568888899*********************************9876.788999999999999999888888888655155 PP
TIGR02204 260 lWvGardvlagklsaGeLaq.fvlyavlvagslgalsevlgel...qraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdq 353
+ a + l+++ s+ +L++ +l l ++ +g ++ +l l a+ aa+r++el + k+ i++ + ++ + i f++++f+yP++p++
MMSYN1_0372 294 FIIIAVQYLTNSQSSNNLGAeIALIFPLLSTLIGGIAILLPSLrsaTAASNAANRISELTDPKPMIHSNLKGYKI--DKIDSIVFDNISFSYPKKPER 389
56789999**********9733333334444555555555555111678899**************998877766..55678**************** PP
TIGR02204 354 kaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldG.vdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaa 450
++ lt ++G+ a+vG +G+Gk+t+ +lllrfy P++G+il++ +l ++ +++ v+q+++++ + l+ni+y + da+deev++a+
MMSYN1_0372 390 IVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNeYNLNRINLPAYLDHIGYVEQEPQILYGTFLDNIKYSKFDATDEEVIKAC 487
**********************************************75379*****99999************************************* PP
TIGR02204 451 kaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvld 548
k+ae ++fi +lp+ y+t lG+rg LsGGqkqr+ iar lkd +++LdeatsaLd e+ +q l+el+kgr + iahrL+t+++ d+i vl
MMSYN1_0372 488 KKAELHDFIMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITIAHRLTTIKNVDHIYVLG 585
************************************************************************************************96 PP
TIGR02204 549 .kG.riveqGthaeLiakggLyarl 571
+G iv++Gt +eL ++ g +++l
MMSYN1_0372 586 aNGtGIVQSGTFDELKKQPGHFRNL 610
24526**********9999888876 PP
>> TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 262.9 1.5 1.7e-80 1.3e-78 30 568 .. 60 613 .. 30 617 .] 0.78
Alignments for each domain:
== domain 1 score: 262.9 bits; conditional E-value: 1.7e-80
TIGR02203 30 esllaallkplldegfse.......lekeevllavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltf 120
++l+ + ++++ ++ + + + ++ ++ + l++ i+++++++ +a s ++ R k+++ l ++ ++ sg++l+rl+
MMSYN1_0372 60 SAMLPLFSSKVINTLVENntqwlfnWMELNSTGWLYVIGINLLI-IIICEYFTNFTVALYSAQIEVMQRLKILKALTDQDVDFYFDHVSGNILTRLVG 156
33444333444444444333334335555555555444444433.359************************************************** PP
TIGR02203 121 dseqvvsaatdvlkvlvretltvigllivllyls....WqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqe 214
d++ + + + l+ l+ i+++i+++ + +l+li ++++ + + + + rk++ + e + + +++ +k g++e
MMSYN1_0372 157 DTQFLALGVQQFLTNLIYALSGSITAIIIMYSQNlimiATLALIYLLVANLFCI--GFFIDMRRKLILAFD-VKRETDADMTDRINNISLIKASGTEE 251
***999999999998888766666666666554411005566666666655443..333333344443332.33334444556788999********* PP
TIGR02203 215 aeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitaml....alikplksLtnvsaklqkglaaaesv 308
e kR ++ +++ + k + +s+l ++ + +++++ + ++++i+ vq +++ + +l a i+ + +li + L + aa+++
MMSYN1_0372 252 FEIKRLEEKNQNYEDGLTKFTYSSALLNTSLTFVIQLLIPIIFIIIAVQYLTNSQSSNNLGAEIALIFpllsTLIGGIAILLPSLRSATAASNAANRI 349
************************************9999998888888777766665555555444400014555555555444455555668999* PP
TIGR02203 309 fallDsppekdeGtr..alervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDg.vdladlkL 402
+l D +p + + +++++ ++ f n++f yp++ +r ++ l+ e+G+ a+vG+ GsGk+t+++ll RFy p++G+il+++ +l+ ++L
MMSYN1_0372 350 SELTDPKPMIHSNLKgyKIDKID-SIVFDNISFSYPKKpERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNeYNLNRINL 446
*****998766554411566665.799*********87467788999****************************************86269****** PP
TIGR02203 403 asLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsa 500
++ +v q+ + +t +n++Y++ +++++ev +a ++a l+d++ +lp+ +t +G++g LsGGq+qRl iaR +lkd ++iLDeatsa
MMSYN1_0372 447 PAYLDHIGYVEQEPQILYGTFLDNIKYSKF-DATDEEVIKACKKAELHDFIMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSA 543
*****************************9.999999************************************************************* PP
TIGR02203 501 LDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvldd.G.kiverGtheeLlarnGlYasLhki 568
LDn e+++q+ L++l+kgR + iahRL+ti++ D+i vl + G iv +Gt eL ++ G++ +L++
MMSYN1_0372 544 LDNVVEKEIQDKLDELIKGRMCITIAHRLTTIKNVDHIYVLGAnGtGIVQSGTFDELKKQPGHFRNLYEA 613
****************************************9642426********************986 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 221.3 0.0 9e-68 6.6e-66 17 529 .] 58 584 .. 45 584 .. 0.85
Alignments for each domain:
== domain 1 score: 221.3 bits; conditional E-value: 9e-68
TIGR02857 17 llliaqAallarvvssliaageala....ellta..laalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlll 108
++ + + ++v+++l+ +++++ el + l ++ + ll+ + +++++ a +a+++ r ++l++++ + + sg++ t l+
MMSYN1_0372 58 IFSAMLPLFSSKVINTLVENNTQWLfnwmELNSTgwLYVIGINLLIIIICEYFTNFTVALYSAQIEVMQRLKILKALTDQDVDFYFDHVSGNILTRLV 155
44444444445555555444444433333443323377777788888899*********************************9999*********** PP
TIGR02857 109 egvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsa..aqaaarkqlaalsrLsghfldlvrglptLklfgraka 204
++ l ++++l++l++a+ ++ ++++ +++i ++l l l+ + iG ++ +++ + + + d+++ ++ +k+ g ++
MMSYN1_0372 156 GDTQFLALGVQQFLTNLIYALSGSITAIIIMYSQNLIMIATLALIYLLVA-NLFCIGFFidMRRKLILAFDVKRETDADMTDRINNISLIKASGTEEF 252
**********************9999999999999887777777665554.3445565500555556788999999********************** PP
TIGR02857 205 eaaaikriseeyrer.TmevLriAfLSslvLellatlsvAlvAVyiGlrll.....agkldlaegLlvLlLaPevylPlRqlgaqyHakaegvaaaea 296
e++++++ ++y + T + A+L L ++ l + ++ + i +++l +l + +L+ lL + + l + ++++ +aa+
MMSYN1_0372 253 EIKRLEEKNQNYEDGlTKFTYSSALLN-TSLTFVIQLLIPIIFIIIAVQYLtnsqsSNNLGAEIALIFPLLS-TLIGGIAILLPSLRSATAASNAANR 348
************997255566666665.46888888888888888888888655442255555555544443.45556666666777889999***** PP
TIGR02857 297 lvevldaeeqpeaekapltaaassslelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvnga.elaelda 391
+ e++d ++ ++++ + + ++ s+ ++n+s++y+ + ++ + lt+e g+ +a vG+ G+GK+t+ klll+f pt+G+il+n++ +l+ ++
MMSYN1_0372 349 ISELTDPKPMIHSNLKGYKIDKIDSIVFDNISFSYPKKPerIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEyNLNRINL 446
**********************99***********8776556899******************************************77769****** PP
TIGR02857 392 dswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahL 489
++ ++i++v Q+P++++gt ++ni+ ++ da+++ev +a ++a+l++++ +lp+ ++t +G+rg LSgGq+qRl +Ar++l+d ++++lDE t++L
MMSYN1_0372 447 PAYLDHIGYVEQEPQILYGTFLDNIKYSKFDATDEEVIKACKKAELHDFIMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSAL 544
************************************************************************************************** PP
TIGR02857 490 DaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529
D+ e+e++++l+el++gr+ + +aHrl +++++d+i vl
MMSYN1_0372 545 DNVVEKEIQDKLDELIKGRMCITIAHRLTTIKNVDHIYVL 584
************************************9875 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 221.0 3.4 8.5e-68 6.3e-66 134 690 .. 38 612 .. 9 614 .. 0.79
Alignments for each domain:
== domain 1 score: 221.0 bits; conditional E-value: 8.5e-68
TIGR01846 134 vlryrk.llrevllislllqllalvsPllfevvidkvlvhr...........glstlsvlalallavavaevalsllrtylfahltsridvelgakly 219
+ ++ l+ v+ + l +++ + Pl+ +vi+ ++ ++ + l v+++ ll++ ++e + ++ +a + +i+v k+
MMSYN1_0372 38 IAKQNPlLFFGVVFFTSLDAIFSAMLPLFSSKVINTLVENNtqwlfnwmelnSTGWLYVIGINLLIIIICEYF----TNFTVALYSAQIEVMQRLKIL 131
4444432456677777777778888888888888754333211111111111333477888888888887754....5666777899*********** PP
TIGR01846 220 rhllalPlsyfesrrvGdtvarvreleqirefltgsaltvvldllfvvvflavmffyspkltlvvlvslviylllsvivspi...lrkrvedkfeksa 314
+ l + ++ ++ G++++r+ q + + lt ++ l + a++++ys +l+++ ++l+ l+ ++ + +r+++ f+ +
MMSYN1_0372 132 KALTDQDVDFYFDHVSGNILTRLVGDTQFLALGVQQFLTNLIYAL-SGSITAIIIMYSQNLIMIATLALIYLLVANLFCIGFfidMRRKLILAFDVKR 228
**********************98877776666677777766555.445689999*********9999988777776665532338************ PP
TIGR01846 315 eaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqa.ieliqkltaalllwfGaklvlkGels..vGqlva..fnmlagrv 407
e+++ +++ + i ikas +e+ +r e++ +y k t ++ l + + +iq l ++ + + ++ + + + s +G+ +a f +l+ +
MMSYN1_0372 229 ETDADMTDRINNISLIKASGTEEFEIKRLEEKNQNYEDGLTKFTYSSALLNTSlTFVIQLLIPIIFIIIAVQYLTNSQSSnnLGAEIAliFPLLSTLI 326
**********************9999999999999988777776655554444044556666666666677766655443225666663367888888 PP
TIGR01846 408 sqPvlrlaqlWqdfqqvkialerlGdildsPteass.agkaalpelkGaiefenirfryked.spevlsnlsldikaGeviGivGpsGsGkstltkll 503
+ + l l + + a +r+ ++ d P+ + + k + +i f+ni f y + + v+ l ++G++ vG++GsGk+t++kll
MMSYN1_0372 327 GGIAILLPSL-RSATAASNAANRISELTD-PKPMIHsNLKGYKIDKIDSIVFDNISFSYPKKpERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLL 422
7777766666.5566777899***99766.5544441333344555579**********7651455788999************************** PP
TIGR01846 504 qrlyvPekGrvlvd.gvdlalad.PawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqr 599
r+y P G++l++ + +l ++ Pa l ++g v qe ++ ++ dni+ +k ++ +e+vi+a k a hdfi++l++ y+t +g++G lsGGq+
MMSYN1_0372 423 LRFYAPTDGKILINnEYNLNRINlPAYL-DHIGYVEQEPQILYGTFLDNIKYSKFDATDEEVIKACKKAELHDFIMSLPDQYNTVLGQRGFILSGGQK 519
*************735799988735555.68******************************************************************* PP
TIGR01846 600 qrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvle.kG.kivesGkheellakeglyaklyq 690
qr+ +ar ++++P ++ildeatsald e+ i+++l+e+ kgr i+iahrl+t++++d+i vl +G iv+sG+++el ++ g++ +ly+
MMSYN1_0372 520 QRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITIAHRLTTIKNVDHIYVLGaNGtGIVQSGTFDELKKQPGHFRNLYE 612
****************************************************************9624426*******************996 PP
>> TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 219.3 0.9 2.6e-67 1.9e-65 158 708 .. 49 610 .. 7 612 .. 0.76
Alignments for each domain:
== domain 1 score: 219.3 bits; conditional E-value: 2.6e-67
TIGR03796 158 llvlaglllvlpglvvpafskifvDeilveeaqewl........rplllgllltallqvvltllqlallrrleiklavassarflwhilrlPveffaq 247
++ +++l + + ++p fs + + lve++++wl + l+++ + +l+ + + + + +++ ++++ v+ ++l+ + v+f+
MMSYN1_0372 49 VVFFTSLD-AIFSAMLPLFSSKVI-NTLVENNTQWLfnwmelnsTGWLYVIGINLLIIIICEYFTNFTVALYSAQIEVMQRLKILKALTDQDVDFYFD 144
23334444.445567788887766.567888888872222222223466677777777777778888888889999999999**************** PP
TIGR03796 248 RaageiasRvqlndkvaellsgqlattvldlvlvvfyalvmllydlvlalia....ialaainvlalqlvsrkrvdanrrlqqdagkla.gvaiaglq 340
+g+i +R+ + + +l +q t+++ ++ + a++ ++y++ l +ia i l + n++ + + +r ++ + d + + + ++
MMSYN1_0372 145 HVSGNILTRLVGDTQFLALGVQQFLTNLIYALSGSITAII-IMYSQNLIMIAtlalIYLLVANLFCIGFFIDMRRKLIL--AFDVKRETdADMTDRIN 239
**********999999888888888888888776655544.34555554443000033334444444444444444443..3444444404556789* PP
TIGR03796 341 sietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasfl.epveklvglvselq 437
+i+ +kAsg+e+ ++r+ + + + ++all++ +++ +l +i ++ +++ l + + l a +l+ +l + + + l +l+
MMSYN1_0372 240 NISLIKASGTEEFEIKRLEEKNQNYEDGLTKFTYSSALLNTSLTFVIQLLIPIIFIIIAVQYLTNSQSSNNLGAEIALIFPLLsTLIGGIAILLPSLR 337
*******************999999999999********99999988888888888888888877777666666666555443033445555556666 PP
TIGR03796 438 eleadlerldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgysal.eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsG 534
+ +a + + + e + + + +++ k + k+ ++ ++n++f+y + e+ +i l+ ++G+ A+vG+ GsGk tiakl+ +y+p++G
MMSYN1_0372 338 SATAASNAANRISELTDPKPMIHSNLKGYKI---DKI-DSIVFDNISFSYPKKpERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDG 431
6666555555554443333333322222222...344.46889*******76527788999************************************* PP
TIGR03796 535 eilfDgk.preeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLv 631
+il++++ ++++i+ + + +v+q+ +++ gt dn+ ++e++++A+k A +hd i+++p++y++ l + g lsGGq+qRl iAR
MMSYN1_0372 432 KILINNEyNLNRINLPAYLDHIGYVEQEPQILYGTFLDNIKYSKFDATDEEVIKACKKAELHDFIMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFL 529
***987537899*****************************9999999************************************************** PP
TIGR03796 632 knPsiLilDEatsaLDaetEkaidenlrr..RgctciivaHRLstiRdcdeiivler.Gk.vverGtHeellakegaYarL 708
k+P ++ilDEatsaLD +Ek+i+++l + +g ci +aHRL ti+++d+i vl G+ +v+ Gt +el+++ g++++L
MMSYN1_0372 530 KDPDVVILDEATSALDNVVEKEIQDKLDEliKGRMCITIAHRLTTIKNVDHIYVLGAnGTgIVQSGTFDELKKQPGHFRNL 610
***************************87668***********************6425449****************998 PP
>> TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 216.1 2.5 2.9e-66 2.2e-64 140 682 .. 48 611 .. 23 614 .. 0.81
Alignments for each domain:
== domain 1 score: 216.1 bits; conditional E-value: 2.9e-66
TIGR03797 140 avllvgllgtllglvvPlatgilldeviPdaerslllqval.......allaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFrey 230
v++ + l ++++ ++Pl ++ ++++++ ++++ l + l ++ + l ++ ++ +++v ++++++ + ++ L + f+ ++
MMSYN1_0372 48 GVVFFTSLDAIFSAMLPLFSSKVINTLVENNTQWLFNWMELnstgwlyVIGINLLIIIICEYFTNFTVALYSAQIEVMQRLKILKALTDQDVDFYFDH 145
46778889999*****************9988876544433111111134445556667788899999999999999999999999999********* PP
TIGR03797 231 sagdLasramgvsqirrllsgatlkallssifallnlvlllvyslklalvavllal.vaiavtlvlgllqvrkerk..llelegklsgltvqlingis 325
+g++++r g +q l ++ l++l+ ++ + + +++++ys +l+++a+l ++ + +a + ++g++ +++ +++++ + + + + in is
MMSYN1_0372 146 VSGNILTRLVGDTQFLALGVQQFLTNLIYALSGSI-TAIIIMYSQNLIMIATLALIyLLVANLFCIGFFIDMRRKLilAFDVKRETDADMTDRINNIS 242
***********999877766777777776665555.46778899999999876554155555556666544333331145678889999********* PP
TIGR03797 326 Klrvagaeerafaawakefseqrklelkaqriedll.tvlnavlpvltsavlfalaisll..aaaklslgsflafnt.afgsflkavtslaetlievl 419
++ +g+ee + ++ ++ + +k+ + ll t+l+ v+++l ++ +++a++ l ++++ +lg+ +a ++++++++ l +l +++
MMSYN1_0372 243 LIKASGTEEFEIKRLEEKNQNYEDGLTKFTYSSALLnTSLTFVIQLLIPIIFIIIAVQYLtnSQSSNNLGAEIALIFpLLSTLIGGIAILLPSLRSAT 340
*********9999988877776666666665555551445555666665555555555444567778899999987615688999************* PP
TIGR03797 420 avvplyerakPileaepEvdee..kvdpgkLsGaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDG 514
a+ + +r+ + + +p ++++ + +k +i d+++F Y k + v+ l+ e+G+ a+vG+ GsGK t+ +lLL F P+ G++l
MMSYN1_0372 341 AASNAANRISELTDPKPMIHSNlkGYKIDK-IDSIVFDNISFSYPKKpERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINN 437
*************99998877621334444.46899********8761556788999*************************************9865 PP
TIGR03797 515 .qdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPril 610
++l+++++ a ++G V Q+ ++l g+ l+ni ++ t +e+ +a ++a l + i ++P + Tv+ + g lSGGQ+QRl+iAr + P ++
MMSYN1_0372 438 eYNLNRINLPAYLDHIGYVEQEPQILYGTFLDNIKYSKFdATDEEVIKACKKAELHDFIMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVV 535
279*******************************999988********************************************************** PP
TIGR03797 611 lfDEATSALDNrtQaiVsesleklkvtR..iviAHRLSTirnadrilvl.eeGr.vveqGsyeeLlakeGlfaela 682
++DEATSALDN + + + l++l R i iAHRL Ti+n d+i+vl ++G +v++G+++eL ++ G f +l
MMSYN1_0372 536 ILDEATSALDNVVEKEIQDKLDELIKGRmcITIAHRLTTIKNVDHIYVLgANGTgIVQSGTFDELKKQPGHFRNLY 611
***************************933468****************435645*****************9996 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 210.0 0.3 1.8e-64 1.4e-62 280 684 .. 182 596 .. 41 604 .. 0.87
Alignments for each domain:
== domain 1 score: 210.0 bits; conditional E-value: 1.8e-64
TIGR03375 280 lvialiggplvlvplvavplvllvglllqkplsklaee...slresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsallt 374
++i++ + +l+++ +a++ +l+++l+ + ++ ++ + a + + ++++ ika++ e+ k+ e+ +++ + +k sall
MMSYN1_0372 182 AIIIMYSQNLIMIATLALIYLLVANLFCIGFFIDMRRKlilAFDVKRETDADMTDRINNISLIKASGTEEFEIKRLEEKNQNYEDGLTKFTYSSALLN 279
688889999******9999999999998876655555511155666677899*******************************999999999999887 PP
TIGR03375 375 nlaalvqql.vsvavvvvGv.yli.aegeltmGgLiAavi.LsgRalaPlaqlaglltryqqaktalesldelmklpvereeekrllsreklk..Gei 466
++ ++v ql + ++ +++ v yl ++ + +G+ iA L + + ++ +a ll ++ a +a ++ +++ +l ++ ++ l+ k+ +i
MMSYN1_0372 280 TSLTFVIQLlIPIIFIIIAVqYLTnSQSSNNLGAEIALIFpLLS---TLIGGIAILLPSLRSATAASNAANRISELTDPKPMIHSNLKGYKIDkiDSI 374
77777666515566666666155533445568999997642333...34688999999999999999999999999999999999998888763369* PP
TIGR03375 467 elknvsfkYpee.ekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlld.gvdirqidpadlrrnigyvpqdvtLfyGtlrdNia 562
++n+sf+Yp++ e+ ++ + l+ + G a +G++GsGK+t++klll++y+pt+G++l++ + ++++i+ ++igyv+q+++++yGt dNi+
MMSYN1_0372 375 VFDNISFSYPKKpERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINnEYNLNRINLPAYLDHIGYVEQEPQILYGTFLDNIK 472
*********87725678999*****************************************7258********************************* PP
TIGR03375 563 lgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtH 660
+++ a+dee+++a ++a +++f+ + p+ +++ +g+rG LSgGQ+q +++aR++lkdp++++LDE tsalDn e+++ ++L el++++ + ++H
MMSYN1_0372 473 YSKFDATDEEVIKACKKAELHDFIMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITIAH 570
************************************************************************************************** PP
TIGR03375 661 rtslLelvdriivld.kGr.ivadGp 684
r + ++ vd+i vl +G+ iv G+
MMSYN1_0372 571 RLTTIKNVDHIYVLGaNGTgIVQSGT 596
*************9513322666665 PP
>> TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 195.9 17.5 4e-60 2.9e-58 161 707 .. 49 612 .. 8 613 .. 0.77
Alignments for each domain:
== domain 1 score: 195.9 bits; conditional E-value: 4e-60
TIGR01193 161 iviaailvllisiagsyylqkiidvyiPnklk...ntlgiislglila....yilqqvlsyikafllivlgqrlsidiilsyikhlfelPmsffstrr 251
+v+ + l + s + ++ k+i++ + n+++ n + + s g + + ++ + +y+ +f + + + ++ + l+ +k l + ++f+
MMSYN1_0372 49 VVFFTSLDAIFSAMLPLFSSKVINTLVENNTQwlfNWMELNSTGWLYViginLLIIIICEYFTNFTVALYSAQIEVMQRLKILKALTDQDVDFYFDHV 146
455555555555555666666666666555432224555555554322111133445779**************9999******************** PP
TIGR01193 252 vGeivsrftdaskii.dalastilslfldlsilvivglvlvlqniklfllslvaiPvyaviiilf....kktfeklnkdameanavlnssiiedlnGi 344
G+i++r+ ++ + + + l ls ++ +++ qn l +++ +a+ +y ++ lf + +++ a + + ++ + + +n i
MMSYN1_0372 147 SGNILTRLVGDTQFLaLGVQQFLTNLIYALSGSITAIIIMYSQN--LIMIATLAL-IYLLVANLFcigfFIDMRRKLILAFDVKRETDADMTDRINNI 241
*******9766665504455555556666666666666666666..455554444.455555555100044444444445556666788999****** PP
TIGR01193 345 etiksltseeerykkidsefadylekslkyakaea.vqqalkavlklilnvvilwvGallvirekltlGqlltfnalls.yflnPleniinlqpklqa 440
+ ik+ ++ee++ k+++++ ++y + k++ + a + l v++l + ++ + + a++ +++ + +l + al+ + + + i l p l++
MMSYN1_0372 242 SLIKASGTEEFEIKRLEEKNQNYEDGLTKFTYSSAlLNTSLTFVIQLLIPIIFIII-AVQYLTNSQSSNNLGAEIALIFpLLSTLIGGIAILLPSLRS 338
***********************987766666555156778889998877665544.556666666666666666666514455667888999***99 PP
TIGR01193 441 arvannrlnevy.lvdse.fkekkkltelenlngdievndvsysyGygse..vledislkikknekitlvGlsGsGkstlakllvkffqaesGeilln 534
a a n n + l d + +++ + ++ +i+++++s+sy e v+ l+ +k ++ + vG +GsGk+t+akll++f+ +++G+il+n
MMSYN1_0372 339 ATAASNAANRISeLTDPKpMIHSNLKGYKIDKIDSIVFDNISFSYPKKPEriVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILIN 436
9888877777642444431556666689999999***********97644338899*****************************************8 PP
TIGR01193 535 g.kslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdsk 631
+ +l+ i+ + +i y+ qeP i+ G+ l+n+ +k ++++ee++ka++ ae++d i lp y+t l + ++ +sgGqkqrl +ar +l d +
MMSYN1_0372 437 NeYNLNRINLPAYLDHIGYVEQEPQILYGTFLDNIK-YSKFDATDEEVIKACKKAELHDFIMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPD 533
5279******************************75.689999******************************************************* PP
TIGR01193 632 vlildestsnldlltekkivenllkl.kdktiifvahrlsvakksdkiivlde..GkiieqGshkellkenGfyaslih 707
v+ilde+ts ld ++ek i ++l +l k + i +ahrl+ k++d+i vl +i+++G+++el k+ G++++l++
MMSYN1_0372 534 VVILDEATSALDNVVEKEIQDKLDELiKGRMCITIAHRLTTIKNVDHIYVLGAngTGIVQSGTFDELKKQPGHFRNLYE 612
***********************886377899****************999642157*******************986 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 182.0 0.0 5.9e-56 4.4e-54 89 530 .] 127 572 .. 108 572 .. 0.81
Alignments for each domain:
== domain 1 score: 182.0 bits; conditional E-value: 5.9e-56
TIGR02868 89 RvrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaa..valiallsvaaalvlaaallvalvvaplvslraarsaeqa 184
R ++ + L+ + ++ +G++L+rlv D l+ + ++ l+ Al + a ++ + l + +a +++++llva + +++ +r++
MMSYN1_0372 127 RLKILKALTDQDVDFYFDHVSGNILTRLVGDTQFLALGVQQFLTNLIYALSGSITAiiIMYSQNLIM-IATLALIYLLVANLFCIGFFID-MRRKLIL 222
77788888889999999999************99998888888888888753333200222233333.3333333334443333333333.4555555 PP
TIGR02868 185 larlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaeal.gaaltllaaGlavllallvgv....eavadgrlapvalAvlv 277
+ + e +a+++d +++ + ++++G e ++++ee+++++ + +al ++lt ++ l + ++++v + ++++l + + ++
MMSYN1_0372 223 AFDVKRETDADMTDRINNISLIKASGTEEFEIKRLEEKNQNYEDGLTKFTYSSALlNTSLTFVIQLLIPIIFIIIAVqyltNSQSSNNLGAEIALIFP 320
5566778999******************************9998766666655551556777776677778888888333233344444444433444 PP
TIGR02868 278 LlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaG 373
Ll+ ++ +a l +++ t++ +aa+Ri+e++d k ++ +++ ++ ++ ++++ ++s+syp+++e v+ l+ e+G++ a vG++G+G
MMSYN1_0372 321 LLS-TLIGGIAILLPSLRSATAASNAANRISELTDPK---PMIHSNLKGYKIDKIDSIVFDNISFSYPKKPEriVIPPTYLTFEKGKSYAFVGQTGSG 414
443.4667778888899*******************9...555555555556666799************998999********************** PP
TIGR02868 374 KstLlallaglldplkGevtldg.vsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgegga 470
K+t+++ll+++ +p +G++++++ +++ ++ + + +++q++ + t ++N++ + datdee+ +a ++++L+d + +Lpd ++t+lg++g
MMSYN1_0372 415 KTTIAKLLLRFYAPTDGKILINNeYNLNRINLPAYLDHIGYVEQEPQILYGTFLDNIKYSKFDATDEEVIKACKKAELHDFIMSLPDQYNTVLGQRGF 512
*********************86267788888888899************************************************************ PP
TIGR02868 471 rlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530
lSGG++qRl++AR+ l+d +v++LDE t LD +e+e+ ++L + +gr+ + ++hrl
MMSYN1_0372 513 ILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITIAHRL 572
**********************************************************86 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 176.6 0.5 2.7e-54 2e-52 151 570 .. 190 614 .. 160 617 .] 0.76
Alignments for each domain:
== domain 1 score: 176.6 bits; conditional E-value: 2.7e-54
TIGR01192 151 alamdlrlslvlvvlgivyvliakl......vmsrtkegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftekllsaqypvldwwala 242
l ++ +l+++y+l+a+l + r k a + + + ++d i n+s++++ e e k l++ ++ l ++++
MMSYN1_0372 190 NLI-------MIATLALIYLLVANLfcigffIDMRRKLI-LA-FDVKRETDADMTDRINNISLIKASGTEEFEIKRLEEKNQNYEDG----LTKFTYS 274
333.......33344555555444311110022222222.22.234455678899**********9999999999999999887665....4455555 PP
TIGR01192 243 sglnriastisl.....viilvigtvlvkkge..lsvgeviafi.gfanlligrldqlkafvtqivearakledffdledsvkereepadarelknvk 332
s+l ++ t + +i ++i ++++ + ++g ia+i + lig + l + + a + + +l d + + +++++
MMSYN1_0372 275 SALLNTSLTFVIqllipIIFIIIAVQYLTNSQssNNLGAEIALIfPLLSTLIGGIAILLPSLRSATAASNAANRISELTDPKPMIHSNLKGYKIDKI- 371
5554444443221111122333344444444411568888887734667788888888777777777777777777787776666655555556555. PP
TIGR01192 333 gavefrdisfefanssqgvr..dvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidg.vdiatvtreslrksiatvfqdagllnrsire 427
++ f +isf ++ + + ++ g++ a vg tg+gktt+ ll r y p+ g+ili+ +++ ++ + i v q+ +l + +
MMSYN1_0372 372 DSIVFDNISFSYPKKPERIVipPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNeYNLNRINLPAYLDHIGYVEQEPQILYGTFLD 469
4688*********98665431256778899**********************************7538****************************** PP
TIGR01192 428 nirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfi 525
ni+ + datdeev++a+k a +dfi + ++y+t++g+rg lsgg++qrl iar lk+ +++ldeatsald e ++d +d l k r +
MMSYN1_0372 470 NIKYSKFDATDEEVIKACKKAELHDFIMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCIT 567
************************************************************************************************** PP
TIGR01192 526 iahrlstvreadlvlfl..dqgrliekgsfdeliqkdgrfakllras 570
iahrl+t+++ d + l + +++ g+fdel ++ g+f +l a+
MMSYN1_0372 568 IAHRLTTIKNVDHIYVLgaNGTGIVQSGTFDELKKQPGHFRNLYEAG 614
************877762145579*****************998764 PP
>> TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 160.6 0.9 1.6e-49 1.2e-47 63 529 .. 108 588 .. 45 603 .. 0.72
Alignments for each domain:
== domain 1 score: 160.6 bits; conditional E-value: 1.6e-49
TIGR01842 63 eavRskvlvrigekldkalnkkifkaaieatl.erkkkeslqalrDldqlrqFltgtgliaffDlPw....lpiyllvvfllhpylGllalvgavvlv 155
e +++++ + ++++ + ki+ka ++ + ++ s +l+ l qFl+ + + +l + ++ ++++++ + +++l+ + +lv
MMSYN1_0372 108 EYFTNFTVALYSAQIEVMQRLKILKALTDQDVdFYFDHVSGNILTRLVGDTQFLALGVQQFLTNLIYalsgSITAIIIMYSQ-NLIMIATLALIYLLV 204
4555555566666666666666666666666644445555555555555555555422222222221000022223333332.222233333233333 PP
TIGR01842 156 alallneaatkkklkeateasikanklldsalr..naeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylai 251
a + + + + k + +k+++++d + r n+ i+a g + kr e++++++ + ++ ++ ++ l++ ++ +l + + a+ +
MMSYN1_0372 205 ANLFCIGFFIDMRRKLILAFDVKRETDADMTDRinNISLIKASGTEEFEIKRLEEKNQNYEDGLTKFTYSSALLNTSLTFVIQLLIPIIFIIIAVQYL 302
33233333333333334445555555555554443999*********99************9999999999988876655544444444444444333 PP
TIGR01842 252 kg...eitaGmiiagsi.lvgraLaPidqaievWkqfsaarkaykrlkelleelpareealklPepeg..elevenvslvppeekk.ktlkgisfalk 342
+ + G+ ia l++ ++ i ++ ++ +aa +a +r++el + p+ +++lk + ++ ++ +n+s+ p++ + ++ ++ +
MMSYN1_0372 303 TNsqsSNNLGAEIALIFpLLSTLIGGIAILLPSLRSATAASNAANRISELTDPKPMIHSNLKGYKIDKidSIVFDNISFSYPKKPErIVIPPTYLTFE 400
33112334466565433478899999***************************999999988776654227889*****9998765156678999*** PP
TIGR01842 343 aGealaiiGpsgsGkssLarllvGvwlpasGsvrlD.gadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilr 439
+G++ a +G+ gsGk+++a+ll+ + p+ G++ ++ ++l++ + + +iGY+ q+ +++ Gt +ni + +a++e+vi+a k a+ h++i++
MMSYN1_0372 401 KGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINnEYNLNRINLPAYLDHIGYVEQEPQILYGTFLDNIKYSKFDATDEEVIKACKKAELHDFIMS 498
**********************************97258********************************9999999******************** PP
TIGR01842 440 lpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlk.dG 529
lp+ Y+t++g++G LsgGq+qR+ +aR + dP +v+LDe + LD+ e+ + + l el ++++ ++i+hr + ++ vd+i vl +G
MMSYN1_0372 499 LPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELI-KGRMCITIAHRLTTIKNVDHIYVLGaNG 588
***********************************************************995.677899*****************95144 PP
>> TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 104.3 0.0 2.3e-32 1.7e-30 1 226 [. 374 603 .. 374 613 .. 0.83
Alignments for each domain:
== domain 1 score: 104.3 bits; conditional E-value: 2.3e-32
TIGR04520 1 ievenvsfkYee.eekkalkdvsleiekgefvaiiGhNGsGKsTlakllnglllpeegkvlvdgletleeenlweirkkvglvfqnPdnqlvgatvee 97
i ++n+sf+Y++ e+ ++ l+ ekg+ a +G+ GsGK+T+akll ++ p++gk+l+++ l++ nl +++g v q+P q++ t +
MMSYN1_0372 374 IVFDNISFSYPKkPERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYNLNRINLPAYLDHIGYVEQEP--QILYGTFLD 469
5689******995567799**********************************************99******************99..9******** PP
TIGR04520 98 dvaFglENlgvpreeikkrveealkkvgle......efrkkepkkLSGGqkqrvaiagvlalepeiiilDEatsmLDpkgrkevletvkklkkeeklt 189
++ ++ + ++e ik+ + l++ ++ ++ + LSGGqkqr+ ia v+ +p+++ilDEats LD ke+ + +++l k +
MMSYN1_0372 470 NIKYSKFD-ATDEEVIKACKKAELHDFIMSlpdqynTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGR--M 564
**998643.334444444444445555553221111445567778**********************************************9654..5 PP
TIGR04520 190 visitHdleeaveadrvivl..ekgkivaegtpkeifsk 226
i+i+H+l + + d++ vl + iv++gt +e+ ++
MMSYN1_0372 565 CITIAHRLTTIKNVDHIYVLgaNGTGIVQSGTFDELKKQ 603
89*****************94233457788887777665 PP
>> TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 103.1 2.8 2.5e-32 1.8e-30 1039 1514 .. 125 608 .. 44 615 .. 0.80
Alignments for each domain:
== domain 1 score: 103.1 bits; conditional E-value: 2.5e-32
TIGR00957 1039 vlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatplaaviilplallyflvqr.....fyvass 1129
+ l++l++ f+ sgn++ r+ + + + + + + l+ +l i+a+ +i+ + l ++i lal+y+lv f++
MMSYN1_0372 125 MQRLKILKALTDQDVDFYFDHVSGNILTRLVGDTQFLALGVQQFLTNLIYALSGSITAI-IIMYSQNL--IMIATLALIYLLVANlfcigFFIDMR 217
4455677777777888888889***********99999889998888888888888775.56666665..67899999999987632222667777 PP
TIGR00957 1130 rqlkrlesvsrspvyshfnetllgvsvirafeeqe....rfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfavi.srsslsag 1220
r+l v r + +++ + +s+i+a +e r++ + + d k y s + n l+ ++l+ i ++ a+ + s+ss + g
MMSYN1_0372 218 RKLILAFDVKRE-TDADMTDRINNISLIKASGTEEfeikRLEEKNQNYEDGLTKFTYSSALLNTSLTFVIQLLIPIIFIIIAVQYLTnSQSSNNLG 312
888777778776.57899999********9765441111444444445566678888888888888888888777776665554444044444444 PP
TIGR00957 1221 lvglsvsyslqvtaylnwlvrmsseletnivaverlkeysetekeapwqieetappsswpksgrvefrnyslryred.ldlvlrdlnvtieggekv 1315
+++ + l t + + l + a + + se p i+ k + f n s+ y ++ +v+ +t e g+
MMSYN1_0372 313 -AEIALIFPLLSTLI-GGIAILLPSLRSATAASNAANRISELTDPKPM-IHSNLKGYKIDKIDSIVFDNISFSYPKKpERIVIPPTYLTFEKGKSY 405
.45666777765554.45555667789999999988888988777775.6677777889999************7661569999************ PP
TIGR00957 1316 givgrtgagkssltlglfrinesaegeiiid.glniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqy..sdeevwlalelahlkdfvsalp 1408
vg+tg+gk++++ l+r ++g+i i+ n+ +i l ++ + q+p ++ g++ n+ +s++ +deev a + a l+df+ +lp
MMSYN1_0372 406 AFVGQTGSGKTTIAKLLLRFYAPTDGKILINnEYNLNRINLPAYLDHIGYVEQEPQILYGTFLDNIK-YSKFdaTDEEVIKACKKAELHDFIMSLP 500
****************************997258***************************999986.45442279******************** PP
TIGR00957 1409 dkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldk..gevaefda 1502
d+ + + g ls gq+q + +ar +l+ +++ldeat+a+d ++ iq + ++ +tiahrl ti + + vl + + ++
MMSYN1_0372 501 DQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITIAHRLTTIKNVDHIYVLGAngTGIVQSGT 596
***************************************************************************988888777531134666677 PP
TIGR00957 1503 psellqqrgify 1514
el +q g f
MMSYN1_0372 597 FDELKKQPGHFR 608
777777777765 PP
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.8 0.0 2.2e-31 1.6e-29 1 230 [. 374 598 .. 374 611 .. 0.83
Alignments for each domain:
== domain 1 score: 100.8 bits; conditional E-value: 2.2e-31
TIGR04521 1 iklknvsyiYqkgtpfekkalkdvsleiekgefvaiiGhtGsGKstliqhlngLlkptsGeveidgleikakkkkkkklkelrkkvglvFQfpekQLF 98
i ++n+s+ Y k+ e+ + l++ekg+ +a +G+tGsGK+t+ ++l pt+G++ i+++ ++ +l + ++g+v Q e Q+
MMSYN1_0372 374 IVFDNISFSYPKKP--ERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYN----LNRINLPAYLDHIGYVEQ--EPQIL 463
6799******7664..899*********************************************99864....46666999********99..66*** PP
TIGR04521 99 eetvlkdiafgpknlglseeeveervkea.le..lvgld...eellerspfeLSGGqkrrvAiagvLamepevLvlDEptaGLDpkgrkellellkkl 190
t l++i ++ ++++++eev + k+a l+ ++ l+ +++l + f LSGGqk+r+ ia v+ +p+v++lDE+t+ LD +ke+ + l++l
MMSYN1_0372 464 YGTFLDNIKYS--KFDATDEEVIKACKKAeLHdfIMSLPdqyNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDEL 559
**********6..67777777766665542332256777333566889************************************************** PP
TIGR04521 191 kkekgktvilvtHsmedvaeladrvivl.kkGk.vvldgtpe 230
k + i+++H++ + + +d+++vl +G+ +v++gt +
MMSYN1_0372 560 IKG--RMCITIAHRLTTIKN-VDHIYVLgANGTgIVQSGTFD 598
987..8999******99865.799999933454244455544 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.3 0.0 4e-28 2.9e-26 16 233 .. 391 603 .. 373 609 .. 0.85
Alignments for each domain:
== domain 1 score: 90.3 bits; conditional E-value: 4e-28
TIGR00972 16 alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikd 113
++ l ++k k a++G +G+Gk+t+ + l r+ + +Gk+l++++ ++++ ++ ++G v q+p+ + +dn+ y+ + +d
MMSYN1_0372 391 VIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPT-----DGKILINNEYN-LNRINLPAYLDHIGYVEQEPQILYGTFLDNIKYSKF--DATD 480
66677899999***********************99876.....9***9987754.45699****************************853..3578 PP
TIGR00972 114 kkeldeiveesLkk..aalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarv 209
+++++ ++ L++ +l d+ ++ l + ++ LsGGq+qrl+iar +P+v++lDe tsaLD + ++i++ ++eL k + + h + + v
MMSYN1_0372 481 EEVIKACKKAELHDfiMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITIAHRLTTIKNV 578
8999999999998744699************************************************************999999999****999999 PP
TIGR00972 210 sdktaffleGe.lveegeteqifek 233
++ ++G+ +v +g+ +++ ++
MMSYN1_0372 579 DHIYVLGANGTgIVQSGTFDELKKQ 603
8777777777646666666666555 PP
>> TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 89.4 0.1 8e-28 5.9e-26 14 222 .. 397 605 .. 389 610 .. 0.81
Alignments for each domain:
== domain 1 score: 89.4 bits; conditional E-value: 8e-28
TIGR01186 14 leieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekal 111
l e+G + ++G +GsGk+t+ +ll r+ Pt Gkili+ e +++ +l i++v q+ ++ + t ldni+++ ++ de+ k +
MMSYN1_0372 397 LTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNE--YNLNRINL-PAYLDHIGYVEQEPQIL-YGTFLDNIKYS-KFDATDEEVIKACKK 489
77899**********************************977..46777777.667899******98877.78*******97.556666665544333 PP
TIGR01186 112 ealk..lvdl.eeyedryPde...lsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivil 203
l+ + l ++y+ ++ lsGG++qr+ +ar + +Pd++++dea sald ++ +e+qd l +l k + + i+h l +++ d i +l
MMSYN1_0372 490 AELHdfIMSLpDQYNTVLGQRgfiLSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIK--GRMCITIAHRLT-TIKNVDHIYVL 584
3333113445555655444435559********************************************976..78999******6.68999999888 PP
TIGR01186 204 k.aG.eivqvGtPdeilrnPa 222
+G ivq Gt de+ + P
MMSYN1_0372 585 GaNGtGIVQSGTFDELKKQPG 605
515536*********999885 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 85.1 0.0 1.4e-26 1e-24 10 203 .. 388 581 .. 377 584 .. 0.80
Alignments for each domain:
== domain 1 score: 85.1 bits; conditional E-value: 1.4e-26
TIGR03608 10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkks 107
++ ++ + l++ekG+++a vG+ GsGK+t+ +l ++ + +gk++++++ +l++ + + +++gy+ q+ ++l t +n++ +
MMSYN1_0372 388 ERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEY--NLNRI-NLPAYLDHIGYVEQEPQIL-YGTFLDNIKYSKFDAT-D 480
568889999****************************************999..45554.5667789********9988.5788899998643333.3 PP
TIGR03608 108 kkekekkkkevlekv..gl....ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek 199
++ + kk l+++ l ++ l ++ + lsgG+kqR+ +ar+ lk++++++ DE t++LD+ ++e+ + l+el + g++ i + H + ++
MMSYN1_0372 481 EEVIKACKKAELHDFimSLpdqyNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIK-GRMCITIAHRLTTIKN 577
3333333333333320122212256678999***********************************************985.8999999999999999 PP
TIGR03608 200 adrv 203
+d++
MMSYN1_0372 578 VDHI 581
8876 PP
>> TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 83.1 0.0 2.9e-26 2.1e-24 441 641 .. 391 607 .. 350 613 .. 0.77
Alignments for each domain:
== domain 1 score: 83.1 bits; conditional E-value: 2.9e-26
TIGR01271 441 vlknislklekgqllavagstgsgkssllmmilgelepsegki.....khsgr.........isfspqvswimpgtikdniifglsydeyrytsvika 524
v+ l +ekg+ a g tgsgk+++ ++l p++gki r i + q + i+ gt dni + +d vika
MMSYN1_0372 391 VIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKIlinneYNLNRinlpayldhIGYVEQEPQILYGTFLDNIKYS-KFDA-TDEEVIKA 486
555567899*********************************943332122451111111115666777777777777776553.2332.34579*** PP
TIGR01271 525 cq...leediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsklehlkkadkill 619
c+ l + i l+++ +tvlg+ g lsggq+ r+ +ar kd d+ +ld s ld v ekei ++ l l+ + i ++ +l +k+ d+i +
MMSYN1_0372 487 CKkaeLHDFIMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDK-LDELIKGRMCITIAHRLTTIKNVDHIYV 583
*73336667999******************************************************876.899***********************99 PP
TIGR01271 620 l.hegscyf.ygtfselqakkpdf 641
l +g+ gtf el+++ f
MMSYN1_0372 584 LgANGTGIVqSGTFDELKKQPGHF 607
945777654279*****8765555 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.1 0.0 1.6e-22 1.2e-20 2 205 .. 374 580 .. 373 588 .. 0.83
Alignments for each domain:
== domain 1 score: 72.1 bits; conditional E-value: 1.6e-22
TIGR02673 2 ielekvskeyaagve..aLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvl 97
i ++++s++y+++ e ++ l++ekg+ + +G+ G+Gktt+ klll p+ G++ +++e +l++ +lp+ +ig v q+ ++l+ t l
MMSYN1_0372 374 IVFDNISFSYPKKPEriVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNE--YNLNRINLPAYLDHIGYVEQEPQILYG-TFL 468
66899999999766522567899***************************************987..5788999*****************985.899 PP
TIGR02673 98 envalalevrgkkeeeiqkrveevle..lvgledkakalpee....lsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGtt 189
+n+ + + + ++ee i+ ++ l+ + l d+ +++ + lsgG +qR iaR +++P++++ De t lD+ ++++i d l el k
MMSYN1_0372 469 DNIKYS-KFDATDEEVIKACKKAELHdfIMSLPDQYNTVLGQrgfiLSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKG-RM 564
***987.556666666665555555522689999999875544455*********************************************9875.55 PP
TIGR02673 190 vivathdeelvervkk 205
i +h + +++v++
MMSYN1_0372 565 CITIAHRLTTIKNVDH 580
5555688888777765 PP
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 68.2 0.0 2.3e-21 1.7e-19 2 235 .. 374 602 .. 373 612 .. 0.80
Alignments for each domain:
== domain 1 score: 68.2 bits; conditional E-value: 2.3e-21
TIGR02315 2 levenlskvypng..kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvl 97
++++n+s +yp++ + ++ + l+++kG+ a +G+ G+Gk+t+ + + r+ +++g+il++++ +l++ +l +ig++ qe +++ t l
MMSYN1_0372 374 IVFDNISFSYPKKpeRIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNE--YNLNRINLPAYLDHIGYVEQEPQIL-YGTFL 468
56788888888751145678899**************************************9987..4678999**************9876.5789* PP
TIGR02315 98 envLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkek 195
+n+ +++ a++ +++++ ++++ + + +L + + + +r LsGGq+qR+ iaR ++++p++++ DE +++LD+ k++ d+l ++ k +
MMSYN1_0372 469 DNIKYSKFDATD--EEVIKACKKAELHDFIMSLPD-QYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGR 563
*****9998765..577888999998888777765.4567889*************************************************998744 PP
TIGR02315 196 gitvivnlHqvdlakkyad.rivglkageivfdgasseldd 235
+i H++ k+ + ++g + + iv g+ +el++
MMSYN1_0372 564 --MCITIAHRLTTIKNVDHiYVLGANGTGIVQSGTFDELKK 602
..444445666655553321345556666776666666655 PP
>> TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 67.3 0.0 3.9e-21 2.9e-19 2 192 .. 408 604 .. 407 616 .. 0.80
Alignments for each domain:
== domain 1 score: 67.3 bits; conditional E-value: 3.9e-21
TIGR01187 2 LGpsGsGkttlLrllaGleeldsGkilldge...dvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLe..lv....ql 90
+G +GsGktt+ +ll + + Gkil+++e + ++ pa++ +++ v q+ + + t +n+ ++ k + ++++ ik+ k+ L+ ++ q
MMSYN1_0372 408 VGQTGSGKTTIAKLLLRFYAPTDGKILINNEynlNRINLPAYLDHIGYVEQEPQIL-YGTFLDNIKYS-KFDATDEEVIKACKKAELHdfIMslpdQY 503
699*************************98743345789************98765.5799******8.99999999999988888863333112233 PP
TIGR01187 91 eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavl.rkG.kiaqigepe 186
+++ ++ lsGGq+qr+ +ar k P++++lDe+ saLD+ + +++q l +l + G ++ ++h + d i vl +G i+q g+ +
MMSYN1_0372 504 NTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIK--GRMCITIAHRL-TTIKNVDHIYVLgANGtGIVQSGTFD 598
4444566777*******************************************99876..66677777854.56777888888742342588888888 PP
TIGR01187 187 eiyeeP 192
e+ ++P
MMSYN1_0372 599 ELKKQP 604
888877 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 66.9 0.0 5.8e-21 4.2e-19 19 221 .. 395 602 .. 377 605 .. 0.82
Alignments for each domain:
== domain 1 score: 66.9 bits; conditional E-value: 5.8e-21
TIGR03410 19 vslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelg.lealkkk......ekk 109
l+ ekg+ a +G+ g Gktt+ k l+ + ++G+i +++e + i+yv q +i+ t +n++ + ++a++++ + +
MMSYN1_0372 395 TYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYNLNRINLPAYLDHIGYVEQEPQILYG-TFLDNIKYSkFDATDEEvikackKAE 491
568899**********************************998865555555556677*********9965.88999998624555544666665778 PP
TIGR03410 110 ipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvler 207
+++ i++l +++l rg LsGGq+q l iaR+ +++P +++LDe t + + kei++ ++el k + + i + l +++ + y++ +
MMSYN1_0372 492 LHDFIMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIK-GRMCITIAH-RLTTIKNVDHIYVLGAN 587
88899999899999******************************************************98.578877665.55666666666666567 PP
TIGR03410 208 Ge.vvaegekeelde 221
G+ +v++g+ +el++
MMSYN1_0372 588 GTgIVQSGTFDELKK 602
753777777777665 PP
>> TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 63.3 0.0 7.7e-20 5.7e-18 20 239 .. 385 600 .. 371 616 .. 0.77
Alignments for each domain:
== domain 1 score: 63.3 bits; conditional E-value: 7.7e-20
TIGR02769 20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnpr.ksvreiigePlr 116
kk + v+ l+ e+G++ a++G++G+Gk+t+a+lll + P++G++ + + ++l+r + a+ ++ v q+ + ++ +
MMSYN1_0372 385 KKPERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNE--YNLNRINLPAYLDHIGYVEQEPQILYGTFlDNIKYSKF-DAT 479
5556667777889************************************99765..89999999999999999999865433322012222222.222 PP
TIGR02769 117 hltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlv 214
+ + ++++++ + +++l + + vl ++ lsGGq qr+ iar + +P +++ldea s ld v +i ++l +l G ++ i+h l +
MMSYN1_0372 480 DEEVIKACKKAELHDFIMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELI--KGRMCITIAHRLTTI 575
3333444444444444455556667788999999*********************************************96..5999*********99 PP
TIGR02769 215 qkfaqrvlvldeGqiveeikvaell 239
+++ + ++ +G + + + ++l
MMSYN1_0372 576 KNVDHIYVLGANGTGIVQSGTFDEL 600
9987776666777766665555555 PP
>> TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 65.6 0.0 1.3e-20 9.5e-19 5 225 .. 377 603 .. 373 613 .. 0.82
Alignments for each domain:
== domain 1 score: 65.6 bits; conditional E-value: 1.3e-20
TIGR04406 5 enlaksy...kkrkvvkdvslevksgeivGllGPnGaGkttsfymivGlvkadaGkvlldde.ditklplherarlGigylpqeasifrkltveenlk 98
+n++ sy +r v+ l+ ++g+ ++G G+Gktt +++ + ++++Gk+l+++e ++++++l + igy+ qe+ i+ t +n+k
MMSYN1_0372 377 DNISFSYpkkPERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEyNLNRINLPAYL-DHIGYVEQEPQILYG-TFLDNIK 472
5666666221246688889999*************************************875267776665543.46**********987.7789998 PP
TIGR04406 99 av.l.elredldkeereekleelleel..eiahlrekkaaslsGGerrrveiaralaaePkfilldePfagvdPiavsdikklikllkergiGvlitd 192
+ + e++ k+ ++++l++++ l + +++ +++ lsGG+++r+ iar++ +P++++lde +++d ++ ++i+ + l + + + i+
MMSYN1_0372 473 YSkFdATDEEVIKACKKAELHDFIMSLpdQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITIAH 570
64141455678899999999999999866788999*****************************************************9999999974 PP
TIGR04406 193 hnvretldivdrayivs.eGk.vlaeGsaeeivan 225
t++ vd+ y++ +G+ ++++G+ +e+ ++
MMSYN1_0372 571 -R-LTTIKNVDHIYVLGaNGTgIVQSGTFDELKKQ 603
.4.4689999*****95245448888988887655 PP
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.7 0.0 2.5e-20 1.8e-18 7 219 .. 397 606 .. 393 613 .. 0.83
Alignments for each domain:
== domain 1 score: 64.7 bits; conditional E-value: 2.5e-20
TIGR02770 7 lslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgk.elaal..alrgreialilqnPrsafnP.lltikeqlletlkalekls.kqa 99
l+ +gk a+vG+ GsGk++ a+ +l + + t+G+il++++ +l+ + +i+++ q+P+ + l +ik ++ + k+a
MMSYN1_0372 397 LTFEKGKSYAFVGQTGSGKTTIAKLLLRFYA----PTDGKILINNEyNLNRInlPAYLDHIGYVEQEPQILYGTfLDNIKYSKFDATDEEVIKAcKKA 490
677899******************9999998....689***9986537777744344579*********99965266888766665544433333666 PP
TIGR02770 100 kelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladeva 197
+ ++ + + ++ ++vl + f lsGG qR++ia l ++ ++i De t++lD vv++e+ ++l+el + g + i+h l+ + ++ d+++
MMSYN1_0372 491 E---LHDFIMSLPDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIK--GRMCITIAHRLTTIKNV-DHIY 582
6...7888777778899*******************************************************97..667899********987.6677 PP
TIGR02770 198 vm.ekGk.ivergtvkelfqePkh 219
v+ +G iv +gt +el ++P h
MMSYN1_0372 583 VLgANGTgIVQSGTFDELKKQPGH 606
763566549999999999999988 PP
>> TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.4 0.0 3.2e-20 2.4e-18 4 223 .. 376 604 .. 373 613 .. 0.76
Alignments for each domain:
== domain 1 score: 64.4 bits; conditional E-value: 3.2e-20
TIGR03864 4 veglsfaygkr...ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaG.ldlrrap.kealarlGvvfqqstlDldlsveqnlr 96
+++sf+y k+ ++ lt +kg+ a +G G+Gk+t+ +ll r y+ ++g+i ++ ++l+r + + l ++G v q++ + l + n++
MMSYN1_0372 376 FDNISFSYPKKperIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNeYNLNRINlPAYLDHIGYVEQEPQI-LYGTFLDNIK 472
5677777765421157778889**************************************86257766551577*********9988.6668889999 PP
TIGR03864 97 yh...aaLhGlsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWa 189
y a+ + + +a ++++++ + l + + ++ L+GG+++r+ iar l +P++++lDeat LD +++++++ el+ + ++++ a
MMSYN1_0372 473 YSkfdATDEEVIKACKKAELHDFIMSLpdQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELI-KGRMCITIA 569
84111333444444444444444333322233344556667***********************************************.677888765 PP
TIGR03864 190 thlvdeveaedrlvvlh.kG.kvlaqGaaaelaaea 223
h + +++ d++ vl +G ++++G+ +el+++
MMSYN1_0372 570 -HRLTTIKNVDHIYVLGaNGtGIVQSGTFDELKKQP 604
.88889********9952442589999999998764 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 62.6 0.0 1.1e-19 7.9e-18 12 183 .. 396 569 .. 383 576 .. 0.83
Alignments for each domain:
== domain 1 score: 62.6 bits; conditional E-value: 1.1e-19
TIGR01166 12 nlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvr 109
l++e+g++ a++G+ G+Gk+t+ + l P+ Gk+l++ +e + +r +l + ++++v q+p q+++ + +++ ++ + +++ev + +
MMSYN1_0372 396 YLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILIN-NEYNLNRINLPAYLDHIGYVEQEP--QILYGTFLDNIKYSKFD--ATDEEVIKACK 488
5889************************************8.57899***************9998..9************9877..45566655555 PP
TIGR01166 110 ea.laavdis...glee...rpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvis 183
+a l+ +s +++ + +lsgG+k+r+ ia + pdv++lde t+ ld ++++ + l++l + + + i+
MMSYN1_0372 489 KAeLHDFIMSlpdQYNTvlgQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITIA 569
5525544433111344311145568**********************************************9887777665 PP
>> TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 60.7 0.0 3.9e-19 2.9e-17 8 194 .. 373 569 .. 368 614 .. 0.75
Alignments for each domain:
== domain 1 score: 60.7 bits; conditional E-value: 3.9e-19
TIGR03258 8 Gvvleslrvayg...arvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadr...dlthlppykrnlallvqnyalfphlkvee 99
+v+++++ +y r+v+ + l+ e G+ a +G++GsGktt+ +++ f + G++l+ + + lp y ++ + q+ ++ + + +
MMSYN1_0372 373 SIVFDNISFSYPkkpERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEynlNRINLPAYLDHIGYVEQEPQIL-YGTFLD 469
578888888886222589*********************************************87532244679************97765.457889 PP
TIGR03258 100 nvafGlrarkqskaliaervadalklvqlsdaaarlpaq...........lsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhr 186
n+ + +e v +a k +l d+ lp q lsGGq+qr+ +ar + +pdv++lde sald + ++++++l l +
MMSYN1_0372 470 NIKYSK----FD--ATDEEVIKACKKAELHDFIMSLPDQyntvlgqrgfiLSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIK 561
987642....22..2457788888888888888888877666666677778****************************************9999988 PP
TIGR03258 187 elpeltvl 194
+t+
MMSYN1_0372 562 GRMCITIA 569
76666664 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 60.9 0.0 4e-19 2.9e-17 25 220 .. 404 601 .. 396 611 .. 0.80
Alignments for each domain:
== domain 1 score: 60.9 bits; conditional E-value: 4e-19
TIGR02142 25 vtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee..rriseekvielL. 119
a G+ GsGkt++ +l+ p++g+i +++e ++i lp+ ++gyv qe ++ + +n++Y +a+ ee + +++++ +++
MMSYN1_0372 404 SYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYN---LNRINLPAYLDHIGYVEQEPQILY-GTFLDNIKYSKFDATDEEviKACKKAELHDFIm 497
56889****************************9975...46899**************99864.46789****999988776222344555544331 PP
TIGR02142 120 ....giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvl.edGr.vk 211
+ +l + LsGG kqR i+R L +P+++++De +aLD+ kei L++l + ++ ++H l+ ++ + d++ vl +G +
MMSYN1_0372 498 slpdQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGR--MCITIAHRLTTIKNV-DHIYVLgANGTgIV 592
1123357899999999*****************************************999998754..48999******9987.56655524554345 PP
TIGR02142 212 aagkleevl 220
g+ +e+
MMSYN1_0372 593 QSGTFDELK 601
556666665 PP
>> TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 60.4 0.0 4.8e-19 3.5e-17 26 229 .. 397 601 .. 388 607 .. 0.83
Alignments for each domain:
== domain 1 score: 60.4 bits; conditional E-value: 4.8e-19
TIGR02314 26 lfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikr.kvt 122
l kg+ + +g +g+gk+t+ + + + pt+g+++++ + +l+ +l + +ig + q ++l t ++n+ ++++t +e ik k +
MMSYN1_0372 397 LTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNE--YNLNRINLPAYLDHIGYVEQEPQILY-GTFLDNIKYS-KFDATDEEVIKAcKKA 490
556799********************************9865..57899999999************997.5999***986.7999999999864778 PP
TIGR02314 123 ella.lvglsdkkdsypsn....lsggqkqrvaiaralasepkvllcdeatsaldpattqsilellke.inrrlgltillithemdvvkricdevavi 214
el ++ l d+ ++ + lsggqkqr+ iar + +p v++ deatsald + i + l e i r+ +t i+h + +k++ + +
MMSYN1_0372 491 ELHDfIMSLPDQYNTVLGQrgfiLSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDElIKGRMCIT---IAHRLTTIKNVDHIYVLG 585
988725689999988754334449****************************************9999345566666...689*****9997766666 PP
TIGR02314 215 dkge.liekgtvseif 229
+g +++ gt e+
MMSYN1_0372 586 ANGTgIVQSGTFDELK 601
6776255666766665 PP
>> TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.1 0.0 1.4e-18 1e-16 20 223 .. 396 605 .. 374 610 .. 0.74
Alignments for each domain:
== domain 1 score: 59.1 bits; conditional E-value: 1.4e-18
TIGR00968 20 dlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGr.dvtr..vkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakika.kvee 113
l+ ++G+ a++G +GsGk+t+ +++ + p+ G+il++ + + r + + +iG+v q+ ++ + t dni + +d++ ika k e
MMSYN1_0372 396 YLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEyNLNRinLPAYLDHIGYVEQEPQIL-YGTFLDNIKYSK-FDATDEEVIKAcKKAE 491
688999**********************************98634555115566789******98776.56999***9874.4444444444324445 PP
TIGR00968 114 llelv.....qleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlek 206
l +++ q + + + lsGGq+qr+ +ar + +p+v++lde +ald v ke++ l +l + ++ ++h +v + v+ +
MMSYN1_0372 492 LHDFImslpdQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRM--CITIAHRLTTIKNVDHIYVLGAN 587
55443111223333333444569***************************************99999876543..34467877776666544455466 PP
TIGR00968 207 Gk.ieqvgsaeevydepa 223
G i q g+ +e+ ++p
MMSYN1_0372 588 GTgIVQSGTFDELKKQPG 605
644999999999999885 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 58.8 0.0 1.8e-18 1.3e-16 18 196 .. 396 579 .. 374 595 .. 0.76
Alignments for each domain:
== domain 1 score: 58.8 bits; conditional E-value: 1.8e-18
TIGR01277 18 dlsveaGervailGesGaGkstllnliaGflepasGeikvndk...dhtrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedv 112
l+ e+G+ a +G++G+Gk+t+ +l+ f p++G+i +n++ + ++++ y + + qe ++ + t +ni k++a ++e + ++
MMSYN1_0372 396 YLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEynlNRINLPAYLDHIGYVEQEPQIL-YGTFLDNIKYS-----KFDATDEEVI-KA 486
4899************************************9863336778999***********9876.56888999764.....6666654433.44 PP
TIGR01277 113 arqvGiadylerlpee...........lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaia 196
++ + d++ lp++ lsGGq+qr+ +ar ++++ +++lde sald+ + +e+ + +l + + + ++h+l ++++
MMSYN1_0372 487 CKKAELHDFIMSLPDQyntvlgqrgfiLSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGR--MCITIAHRLTTIKNVD 579
5556666666666665444444456669*************************************999999988665..4566778777665544 PP
>> TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 57.5 0.0 4.3e-18 3.2e-16 19 212 .. 390 582 .. 364 589 .. 0.77
Alignments for each domain:
== domain 1 score: 57.5 bits; conditional E-value: 4.3e-18
TIGR02211 19 evlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGk.elsklssneraklrnkklGfiyqfhhlladftalenvamPllisk.ks 114
v+ l ekg++ a vG++GsGk+t+ ll + pt+G++l++ + +l++++ a+l ++G++ q +l t l+n+ + + ++
MMSYN1_0372 390 IVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEyNLNRINL--PAYL--DHIGYVEQEPQILYG-TFLDNIKYSKFDATdEE 482
45666778999***********************************97624554433..3444..68******9999875.89****99887544144 PP
TIGR02211 115 kkeakerakellekvglekrin....kkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl 208
+ +a ++a+ + l ++ n ++ lsGG++qr iar ++++P++v+ de t+ ld+ k+i + l el k + + ++h l+ +k++
MMSYN1_0372 483 VIKACKKAELHDFIMSLPDQYNtvlgQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGR--MCITIAHRLTTIKNV 578
4555555543333445655555111167778********************************************997654..457788888888888 PP
TIGR02211 209 drvl 212
d+
MMSYN1_0372 579 DHIY 582
8765 PP
>> TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.0 0.1 2.8 2.1e+02 34 98 .. 10 74 .. 3 135 .. 0.77
2 ? -1.8 2.4 2.5 1.9e+02 187 247 .. 254 316 .. 157 326 .. 0.62
3 ! 57.6 0.0 2.6e-18 1.9e-16 443 656 .. 364 590 .. 336 593 .. 0.78
Alignments for each domain:
== domain 1 score: -2.0 bits; conditional E-value: 2.8
TIGR00954 34 ekkkkravdaredesskeelkkesknselekkkkkalvdkeflgklkvllkiliprvfckellll 98
+ kkk ++d +++ + k+ + + n+e+ k++ ++ +f+ l+ ++ ++p + +k + l
MMSYN1_0372 10 KIKKKWSFDNKGKFTFKKFSLFIRMNVEIAKQNPLLFFGVVFFTSLDAIFSAMLPLFSSKVINTL 74
45566677777777777777777777888888888888888888888888888887777655544 PP
== domain 2 score: -1.8 bits; conditional E-value: 2.5
TIGR00954 187 vsnldsriknidqsltkDvekFc..dsvvelysnlaKPllDlilysfkLltalgsvgaaglla 247
+ l+++ +n ++ ltk + + +++ + +l+ P++ +i+ + +L+++ +s+ + +a
MMSYN1_0372 254 IKRLEEKNQNYEDGLTKFTYSSAllNTSLTFVIQLLIPIIFIIIAVQYLTNSQSSNNLGAEIA 316
444555555555555555443321133444456888999999999999999988876665555 PP
== domain 3 score: 57.6 bits; conditional E-value: 2.6e-18
TIGR00954 443 rgkveaqdngikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslgtlRd...q 535
+g ++ + i f+ni P ++i+ + ++G++ +G G GK + ++l ++ g+ +++e +l + Y+ + + + q
MMSYN1_0372 364 KGYKIDKIDSIVFDNISFSYPkkPERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYNLNRINLPAYLDHIGYVEqepQ 461
455556677899********9655789****99****************************9977777777777777777777777765433321236 PP
TIGR00954 536 iiYPdssedfker..glsdkdLeqiLeevkLedll.ereggwdavqdWkd.vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakev 629
i+Y +++k + +d+++++ ++ +L+d + +++v + +LsgG+kqR+ +AR+f P ++LDE+tsA+ vE+++ +++ e+
MMSYN1_0372 462 ILYGTFLDNIKYSkfDATDEEVIKACKKAELHDFImSLPDQYNTVLGQRGfILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDEL 559
77777777766544588999***********996515566788887666538********************************99**9999999885 PP
TIGR00954 630 ..gitllsvshrksLwky..HeylLkldgkG 656
g ++++hr + +k H y+L +g G
MMSYN1_0372 560 ikGRMCITIAHRLTTIKNvdHIYVLGANGTG 590
336789**********983355556555555 PP
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 57.4 0.0 4.9e-18 3.6e-16 20 195 .. 391 567 .. 374 590 .. 0.79
Alignments for each domain:
== domain 1 score: 57.4 bits; conditional E-value: 4.9e-18
TIGR02982 20 vlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsake 117
v+ l+ e+g + G++GsGktt+ l+ + + +G++ + + +++++ +l + +iGy+ q+ +l t +n++ + +++ + +
MMSYN1_0372 391 VIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILIN--NEYNLNRINLPAYLDHIGYVEQEPQILYG-TFLDNIKYSKFDATDEEVIK 485
555567888888889999**************88888999987664..446788888999999********998864.8899**99864444445555 PP
TIGR02982 118 akakaeelleavgleerldykped....lsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgtti 195
a++kae + l ++ + + lsgGqkqr+ iar + + P++v+ de t+ald+ +e+ + l +l + + +
MMSYN1_0372 486 ACKKAELHDFIMSLPDQYNTVLGQrgfiLSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCIT 567
6666655555667777666544433344**********************************************99887743 PP
>> TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.9 0.0 7.1e-18 5.2e-16 13 197 .. 389 584 .. 376 603 .. 0.72
Alignments for each domain:
== domain 1 score: 56.9 bits; conditional E-value: 7.1e-18
TIGR03740 13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgr.ewtrkd....lkkiGsliesPal.yenltarenlk...vrtlllglp 101
+ v+ l+ +k + y+++G G+Gk+t+ kll + +t G+il++++ +++r + l +iG + ++P + y+ t +n+k ++ +++
MMSYN1_0372 389 RIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEyNLNRINlpayLDHIGYVEQEPQIlYG--TFLDNIKyskFDATDEEVI 484
45666778999************************************98636788652222689***9999985265..4456655111555555443 PP
TIGR03740 102 e.srieevlk.ivdlentek....kkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladh 193
+ + e+ + i+ l ++ ++ +s G kqrl ia +l++P+++ilde t ld + +e+++ + + + + + + +h l+ ++++ dh
MMSYN1_0372 485 KaCKKAELHDfIMSLPDQYNtvlgQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITI-AHRLTTIKNV-DH 580
30333333322233433333000144455788****************************************999887776666.6999999875.66 PP
TIGR03740 194 iGii 197
i ++
MMSYN1_0372 581 IYVL 584
6544 PP
>> TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 53.1 0.5 9.1e-17 6.7e-15 15 214 .. 398 603 .. 395 610 .. 0.80
Alignments for each domain:
== domain 1 score: 53.1 bits; conditional E-value: 9.1e-17
TIGR01188 15 kveegevfglLGPnGAGKtttikmLttllkPdsGtarva.GyDvvrepd.evRrsigvvpqkasvdedLtarenlellgelyglpkkeae.eraeell 109
e+g+ ++++G G GKtt+ k+L P++G+ ++ y++ r +ig v q+ ++ t +n++ +++ +++++ + +el
MMSYN1_0372 398 TFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINnEYNLNRINLpAYLDHIGYVEQEPQILYG-TFLDNIKY-SKFDATDEEVIKaCKKAELH 493
67899*******************************9972588877443366789******9987544.66788875.56666665554415778888 PP
TIGR01188 110 elv.elkeaadkkvkt....ysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaii.dkGk 201
+++ +l ++ + +++ +sgG+++rl +a+ ++++P+v+ LDE t+ LD ++i d ++el k + i + +h l + ++ d++ ++ +G+
MMSYN1_0372 494 DFImSLPDQYNTVLGQrgfiLSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITI-AHRLTTIKNV-DHIYVLgANGT 589
865378888888888655557*********************************************998888765.6889888765.77777633454 PP
TIGR01188 202 .iiaedtpeeLKer 214
i+ +t +eLK++
MMSYN1_0372 590 gIVQSGTFDELKKQ 603
49999******986 PP
>> TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 54.0 0.0 4.7e-17 3.5e-15 25 226 .. 397 604 .. 389 608 .. 0.84
Alignments for each domain:
== domain 1 score: 54.0 bits; conditional E-value: 4.7e-17
TIGR03265 25 lsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggr...ditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelL 119
l+ +kg +++G G Gktt+ +++ + ++ G+il++++ + +lp+ G v q + t +ni+y + ++ a + +el
MMSYN1_0372 397 LTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEynlNRINLPAYLDHIGYVEQEPQILYG-TFLDNIKYSKFDATDEEVIKACKKAELH 493
678899999****************************99876322335689999999*****9765543.899*****98887766666666777777 PP
TIGR03265 120 elv.glsgseekyPgq....lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqr.klgvttimvthdqeealslaDrivvm..n 209
+ + l+++ + gq lsGGq+qr+ +ar + P++++LDe saLD v ++++ l +l + ++ +t ++h + D+i v+ n
MMSYN1_0372 494 DFImSLPDQYNTVLGQrgfiLSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKgRMCIT---IAHRL-TTIKNVDHIYVLgaN 587
75438****999999988889*******************************************9977244443...56765.578889***997557 PP
TIGR03265 210 kgkieqvgtPeeiYeqP 226
+ i q gt e+ +qP
MMSYN1_0372 588 GTGIVQSGTFDELKKQP 604
889**********9999 PP
>> TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.7 0.0 2.1e-16 1.6e-14 21 240 .. 397 606 .. 387 610 .. 0.75
Alignments for each domain:
== domain 1 score: 51.7 bits; conditional E-value: 2.1e-16
TIGR03005 21 levaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGv 118
l+ ++G+ a +G +GsGk+ti ++l+ + + +G+i ++ e y ++ + +l pa h iG v q+ +++ + t ldn+ + +
MMSYN1_0372 397 LTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNE--YNLN--RINL-PAYLDH-------IGYVEQEPQIL-YGTFLDNIKYSKFDATDE 481
56789**********************************666..4444..2234.666555.......55555555544.445666666666666666 PP
TIGR03005 119 araeaekravelldm.vGladkadalpaq....lsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfar 211
+ +a k+a el d+ + l d+ +++ q lsGGqkqr+ iar + p v+++de+tsald + +e+ + l +l + + + + ++h++ +
MMSYN1_0372 482 EVIKACKKA-ELHDFiMSLPDQYNTVLGQrgfiLSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGR-M-CITIAHRLTTIK 576
666666655.455431456666666555544449********************************9999***9999998765.3.356799999999 PP
TIGR03005 212 efadrvlffdkGk.iveeGkpdeifrkpke 240
++ ++ +G iv+ G de+ ++p +
MMSYN1_0372 577 NVDHIYVLGANGTgIVQSGTFDELKKQPGH 606
998766666666449999999999998865 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.9 0.0 1.5e-16 1.1e-14 47 240 .. 398 584 .. 372 603 .. 0.84
Alignments for each domain:
== domain 1 score: 51.9 bits; conditional E-value: 1.5e-16
TIGR00955 47 vaksGellAvlGsSGaGKtTLlnal.afrsekglkvsgdvllnGekveakemraisayvqqd.dlfiptltvrehLmfsahlrlkrrltkkekrerve 142
++++G+ A +G G+GKtT+ + l f+ +++ k+ + n ++++ +yv+q+ +++ +t +++ +s ++++ k k++ +
MMSYN1_0372 398 TFEKGKSYAFVGQTGSGKTTIAKLLlRFYAPTDGKILINNEYNLNRINLPAYLDHIGYVEQEpQILYGT--FLDNIKYSKFDATDEEVIKACKKAELH 493
57899999*************99752689999999988888889999999*********9873566665..57889888777789999999******* PP
TIGR00955 143 evleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiill 240
+ + ++L + +t+ g+ g lSgG+++Rl +a l+dP ++++DE Ts LD + +++ L +l + g++ i+ H + ++ d+i++l
MMSYN1_0372 494 DFI--MSLPDQYNTVLGQRGF--ILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIK-GRMCITIAHRLT--TIKNVDHIYVL 584
*99..7899********7775..8**********************************************75.666777778654..35677777766 PP
>> TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.1 0.1 6.8 5e+02 226 265 .. 220 259 .. 185 270 .. 0.67
2 ! 52.1 0.1 2e-16 1.5e-14 23 222 .. 397 603 .. 373 610 .. 0.81
Alignments for each domain:
== domain 1 score: -2.1 bits; conditional E-value: 6.8
TIGR03522 226 kvievefeeeidlqllekleevsevkklkgntykltvete 265
++ +++ e d+++ + ++++s +k + +++++ +e
MMSYN1_0372 220 LILAFDVKRETDADMTDRINNISLIKASGTEEFEIKRLEE 259
3444555556666666666666666666666666554433 PP
== domain 2 score: 52.1 bits; conditional E-value: 2e-16
TIGR03522 23 feaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsl..evrkniGylP.ehnPlyldly.vreylefsaalyklkgrklkkrvee 116
++ ekG+ f+G G+Gk+t+ k+l + +++ G + +++e l+ + +iGy+ e ly + +y +f a+ ++ + +k ++++
MMSYN1_0372 397 LTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYNLNRINlpAYLDHIGYVEqEPQILYGTFLdNIKYSKFDATDEEVIKACKKAELHD 494
5779***********************************98877764331256689***96244557766441458**********999999999999 PP
TIGR03522 117 lielvGlkaeqhkkiga....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGk. 209
+i + ++ +g+ ls G +qr +a+ +l dP+v+ilde t+ ld ei++ + e+ k + i +h + ++ + + ++ +G
MMSYN1_0372 495 FIMSLPDQYNT--VLGQrgfiLSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITIAHRLTTIKNVDHIYVLGANGTg 590
99765433332..334334449*******************************99999**********************999999877666555543 PP
TIGR03522 210 ivadkkleelkaa 222
iv + + +elk++
MMSYN1_0372 591 IVQSGTFDELKKQ 603
9999999999865 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.8 0.0 2.6e-16 1.9e-14 12 190 .. 388 575 .. 383 583 .. 0.72
Alignments for each domain:
== domain 1 score: 51.8 bits; conditional E-value: 2.6e-16
TIGR01189 12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKae...L..salEnLkfyaallqse 104
er ++ +++ G+ + +G+ G+GKtt+ ++l p++G++ +n++ + + +yl H + +e L + l+n+k+ + + ++e
MMSYN1_0372 388 ERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYNLNRINL----PAYLDHIGYVEQEpqiLygTFLDNIKYSKFDATDE 481
56677777889999***********************************6554333333....34444444444331113338899**9987776655 PP
TIGR01189 105 qktveealekvgLsgl.......edlpvaq....LsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdlgl 190
+ v +a +k++L+++ ++++ q Ls Gqk+Rl +ar++l+ + iLDE t alD+ + ++++l++ + +g + + +h +
MMSYN1_0372 482 E--VIKACKKAELHDFimslpdqYNTVLGQrgfiLSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELI-KGRMCITIAHRLTTI 575
5..77777777766652111111444444345559**************************************99998855.566666666655555 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.9 0.0 7.2e-16 5.3e-14 9 197 .. 378 574 .. 372 600 .. 0.77
Alignments for each domain:
== domain 1 score: 49.9 bits; conditional E-value: 7.2e-16
TIGR01288 9 gvsksyg...dkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlar..akigvvpqfdnldreftvrenllvf 101
++s sy +++v+ +t +g+ + ++g g+gk+tia+l+l + +p gki + +e +r+ l +ig v q ++ t +n + +
MMSYN1_0372 378 NISFSYPkkpERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYNLNRINLPAylDHIGYVEQEPQILY-GTFLDN-IKY 473
55666651114699999999**********************************************998642268****99776533.345555.568 PP
TIGR01288 102 gryfglstreieevi.psllefa.rleskadvrvad....lsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltth 193
++ + i++ l +f l + ++ + + lsgg k+rl +ar +++dp+++ilde t+ ld + i ++l l+ +g+ + +h
MMSYN1_0372 474 SKFDATDEEVIKACKkAELHDFImSLPDQYNTVLGQrgfiLSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELI-KGRMCITIAH 570
88777777777766514577886256677776555444449******************************************9876.6776666666 PP
TIGR01288 194 lmee 197
+
MMSYN1_0372 571 RLTT 574
6554 PP
>> TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.1 0.0 6.4e-15 4.7e-13 27 208 .. 395 571 .. 385 585 .. 0.75
Alignments for each domain:
== domain 1 score: 47.1 bits; conditional E-value: 6.4e-15
TIGR02324 27 vsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGveree 124
l+ e+G+ a+ G++G+Gk t+ k l + Y p g+il+++e ++ +++ +igyv q +++ ++ ++ e +
MMSYN1_0372 395 TYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYNLN---RINLPA----YLDHIGYVEQEPQILYGTFLDNIKYSKFDATDEEVIK 485
568999***********************************9966554...444333....2358999999887776655444555555555555556 PP
TIGR02324 125 arakakellarlniperLWsl.aPa..tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208
a +ka+ + +p++ ++ sGG kqR+ iar +++d +++Lde t++Ld+ k + + ++e+ + g i+i h
MMSYN1_0372 486 ACKKAELHDFIMSLPDQYNTVlGQRgfILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIK-GRMCITIAHR 571
66666666666788888765513331156*********************************99999999988764.5566788885 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.4 0.0 5.1 3.7e+02 148 181 .. 165 198 .. 157 221 .. 0.71
2 ! 47.4 0.0 6.2e-15 4.5e-13 3 200 .. 399 601 .. 397 610 .. 0.76
Alignments for each domain:
== domain 1 score: -1.4 bits; conditional E-value: 5.1
TIGR03771 148 sqellvelfeelagegtail.mtthdlaeavatcd 181
q+ l++l+ +l+g tai+ m + +l +at
MMSYN1_0372 165 VQQFLTNLIYALSGSITAIIiMYSQNLIM-IATLA 198
578899********999875266666654.44444 PP
== domain 2 score: 47.4 bits; conditional E-value: 6.2e-15
TIGR03771 3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkg......rreiGyvpqrhefawdfpid.veqtvlsGra.gliGllrrpkkadfa 92
+kG+ +++G G+Gktt+ + +l + +++ G++ ++ + + + +iGyv q + + +d ++ + ++ i ++++ df+
MMSYN1_0372 399 FEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYNLNRinlpayLDHIGYVEQEPQILYGTFLDnIKYSKFDATDeEVIKACKKAELHDFI 496
6789999******************************98755332111111469*******9999976665155555554431445566666666665 PP
TIGR03771 93 avadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvl.lngr 189
+l t l +r lsGGq+qr+++ar + +p +++lde + ld+ ++++ + + el + ++i +h l+ ++ + vl ng+
MMSYN1_0372 497 ---MSLPDQYNTVLGQRGF-ILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCIT-IAHRLTTIKNVDHIYVLgANGT 589
...5677777788999986.6**********************************************98777665.5799987666655544434665 PP
TIGR03771 190 .vvadgapdqlq 200
+v g+ d+l+
MMSYN1_0372 590 gIVQSGTFDELK 601
356666666665 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.5 0.0 2.7e-15 2e-13 23 233 .. 397 604 .. 391 611 .. 0.83
Alignments for each domain:
== domain 1 score: 48.5 bits; conditional E-value: 2.7e-15
TIGR03411 23 lsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk.dltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlske 119
l+ e+g+ + +G G+Gktt+ ++ p++G++l++++ +l +++ ig q+p+++ t l+n++ + + + +++ a ++e
MMSYN1_0372 397 LTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEyNLNRINLPAYLD-HIGYVEQEPQILY-GTFLDNIKYSKFD-ATDEEVIKACKKAE 491
6778899999*******************************99999998887665.599********86.5899***998643.33344454444555 PP
TIGR03411 120 ekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlhe 217
++ i ++ ++ ++ ++ Ls Gqkq+L i+ +++++p++++lDe ++ + + ++++ + l el k r + + h ++ ++++++ ++
MMSYN1_0372 492 LHDFIMSLPDQ--YNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITIAHRLTTIKNVDHIYVLGAN 587
55555554443..45667778889****************************************************************9976555567 PP
TIGR03411 218 Gk.vlaeGsldevqade 233
G+ ++ G++de+++++
MMSYN1_0372 588 GTgIVQSGTFDELKKQP 604
7647889*****99876 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.9 0.0 1.3e-14 9.9e-13 14 221 .. 389 597 .. 379 611 .. 0.82
Alignments for each domain:
== domain 1 score: 45.9 bits; conditional E-value: 1.3e-14
TIGR03873 14 rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlaga.dlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaad 110
r+++ +t+ +G+ + +G GsGk+t+ +ll ap++G++ ++ + +l+ ++ a ++ veq+ + + + d + + +
MMSYN1_0372 389 RIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEyNLNRINLPAYLDHIGYVEQEPQI-LYGTFLDNIKYSKFDATDEEVIK 485
6677777789999********************************8876538999***************9765.44577788888887777777777 PP
TIGR03873 111 sdedaevvdrala..rvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdh 206
+ + ae+ d +++ + + l +r + lsGG++qr +ar + ++P +++lde t ld e+ + el++ ++ + +a h l+ ++ +dh
MMSYN1_0372 486 ACKKAELHDFIMSlpDQYNTVLGQRGF-ILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITIA-HRLTT-IKNVDH 580
777888888766511445566777776.7**********************************************8777776666.99986.56789* PP
TIGR03873 207 vvvldg..GrvvaaGpp 221
+ vl++ +v +G+
MMSYN1_0372 581 IYVLGAngTGIVQSGTF 597
99996421457777765 PP
>> TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.0 0.0 1.5e-14 1.1e-12 6 173 .. 397 570 .. 392 590 .. 0.79
Alignments for each domain:
== domain 1 score: 46.0 bits; conditional E-value: 1.5e-14
TIGR01184 6 leikkgefislighsgcgkstllnliaglekptsgavileg....keitepgp.drmvvfqnysllpwltvreniala.vdavlrdlskserreivee 97
l+ +kg+ +++g +g gk+t+ l+ + pt+g + ++ ++i+ p d + ++ + + t +ni + da +++ k+ +++ +++
MMSYN1_0372 397 LTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNeynlNRINLPAYlDHIGYVEQEPQILYGTFLDNIKYSkFDATDEEVIKACKKAELHD 494
788999999****************************998622224788887536666556666777999*****87636788888888888777777 PP
TIGR01184 98 hielv.g.lreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvth 173
i + + ++ +r lsgg kqr+ iar + p++++lde ald + +e+q+kl ++++ + + + ++h
MMSYN1_0372 495 FIMSLpDqYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMC--ITIAH 570
6644313145566788889*******************************************999987654..44555 PP
>> TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.2 0.4 1.2e-13 9.1e-12 306 494 .. 398 578 .. 390 603 .. 0.73
Alignments for each domain:
== domain 1 score: 42.2 bits; conditional E-value: 1.2e-13
TIGR03269 306 evkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpde.l..ak 400
+ ++++ + vG++G+Gktt++k+l+ pt+G++ + +e+ + + + +iG + qe ++ + t l+n+ + ++ de + a
MMSYN1_0372 398 TFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILI--NNEY----NLNRINLPAYLDHIGYVEQEPQIL-YGTFLDNIKYSK-FDATDEeVikAC 487
56677889**************************9865..5555....22233445567899******8865.5799***98775.454444142233 PP
TIGR03269 401 rkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlev 494
+ka ++ + ++ + +l + ls G++ r+ +a+v++k+p +vilde t ++d + ++++++ + + + ++ + ++h + +++v
MMSYN1_0372 488 KKAELHDFIMSL-PDQYNTVLGQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIK--GRMCITIAHRLTTIKNV 578
444433333444.456789******************************************99999876543322..33445556666555555 PP
>> TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.3 9.5 5.9e-14 4.3e-12 122 541 .. 173 583 .. 46 594 .. 0.64
Alignments for each domain:
== domain 1 score: 43.3 bits; conditional E-value: 5.9e-14
TIGR01194 122 lsdtllilttllvelavtlfglaylaylsvvvflltvvlivlGvaayllarsrGlkftykvrdeedelnkyttalvsGlkelklnrirrlsfarsais 219
+ +++ ++t++++ + l +a la + + v l + + + + +l++ +k d+ d +n+ +sG e+ ++r + + +
MMSYN1_0372 173 IYALSGSITAIIIMYSQNLIMIATLALIYLLVANLFCIGFFIDMRRKLILA-FDVKRET-DADMTDRINNISLIKASGTEEFEIKRL------EEKNQ 262
223333444444444444444444444333333333333333333332222.2223222.237777888888888999999999999......44556 PP
TIGR01194 220 esavrvadlniieilifilaktvGslllsllvGllltlaayfavidakaisasvlvllyikGplvqlvsi.lpilararvaftrlaelserisepepe 316
+ ++++ +++ l+ + v +ll+ + + +++ ++ + + ++ + a + ++ + l ++i lp l a a a+ ++++p+p
MMSYN1_0372 263 NYEDGLTKFTYSSALLNTSLTFVIQLLIPI-IFIIIAVQYLTNSQSSNNLGAEIALIFPLLSTLIGGIAIlLPSLRSA-TAASNAANRISELTDPKPM 358
7778899********999998888887765.55667777777788888888888888778888877666615666555.4555556666668899997 PP
TIGR01194 317 lelseaenvllldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsd.esrddy 413
+ + + d +ds+ + ++ +sy++ e + p l+ ++G+ vG+ G Gk+t++klll +y p +G++l++ e + y
MMSYN1_0372 359 IHSNLKG----YKID-KIDSIVFDNISFSYPK--KPERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYNLNrINLPAY 449
7644444....4444.58***********975..57899*********************************************99865440445667 PP
TIGR01194 414 rdlfsavfad....yylfddlvqpdekkqasldqattylsrleledkvkvedlnysttt.....dlstGqrkrlalvnayleerpvllldewaadqdp 502
d v + y f d ++ k +a+ ++ + ++ el+d + +y t ls Gq++rl + +l++ v++lde ++ d
MMSYN1_0372 450 LDHIGYVEQEpqilYGTFLDNIK-YSKFDATDEEVIKACKKAELHDFIMSLPDQYNTVLgqrgfILSGGQKQRLVIARVFLKDPDVVILDEATSALDN 546
77666665542222333333343.334444455556666666777766666666665431111259*************************9999998 PP
TIGR01194 503 afkrvfyeellpdlkrrGktilvishddryfeladrlik 541
+ ++l +l +G+ + i+h + d++
MMSYN1_0372 547 VVEKEIQDKL-DEL-IKGRMCITIAHRLTTIKNVDHIYV 583
8888776665.333.468888888887766666666655 PP
>> TIGR01978 sufC: FeS assembly ATPase SufC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.1 0.4 1.7e-12 1.2e-10 20 230 .. 396 598 .. 387 604 .. 0.72
Alignments for each domain:
== domain 1 score: 39.1 bits; conditional E-value: 1.7e-12
TIGR01978 20 nlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgq.dlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldl 116
l+ +kG+ +a +G+ GsGk t++k l y t+G+i ++++ +l+ ++ + + + e+ p + +fl + ++ +a +ee +++
MMSYN1_0372 396 YLTFEKGKSYAFVGQTGSGKTTIAKLLLR--FYAPTDGKILINNEyNLNRINLPAYLDH-----IGYVEQEPQILYGTFLDNIKYSKFDATDEEVIKA 486
58899*********************985..67889*****987625555555443332.....2344444555566677666666666666777777 PP
TIGR01978 117 lefekllkeklelleldeelleRslneGf..sGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikP 212
+ ++ l++ +++l+ ++ + Gf sGG k+r i ++ l +P+++iLDe+ s lD k + +++++l + ++ + i+h rl +
MMSYN1_0372 487 CKKAE-LHD--FIMSLPDQYNTVLGQRGFilSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMC-ITIAH--RLTTIKNV 578
66533.333..34445555555555667666*******************************99999999999999876654.45566..55555566 PP
TIGR01978 213 dvvhvl.ldGr.ivksGdve 230
d+++vl ++G+ iv+sG ++
MMSYN1_0372 579 DHIYVLgANGTgIVQSGTFD 598
88888844565599999875 PP
>> TIGR01257 rim_protein: rim ABC transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.1 0.0 1.4e-12 1e-10 950 1124 .. 396 576 .. 375 613 .. 0.76
Alignments for each domain:
== domain 1 score: 37.1 bits; conditional E-value: 1.4e-12
TIGR01257 950 nitfyenqitaflghngagktttlsiltgllpptsgtvlvggkd.i.etnldavrqslgmcpqh.nilfh.hltvaehilfyaqlkgrsweeaqle 1041
+tf + + af+g+ g+gktt +l + pt g +l+ + + nl a + +g + q +il+ l + y+++ e +
MMSYN1_0372 396 YLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYnLnRINLPAYLDHIGYVEQEpQILYGtFLDNIK----YSKFDATDEEVIKAC 487
5799999999******************************9764132579999********9983566541333444....555555555555555 PP
TIGR01257 1042 meamledt..glhhkrn....eeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdead 1124
+a l d l + n + lsgg +++l +a f+ d vv+lde ts +d + i d l gr i +h +
MMSYN1_0372 488 KKAELHDFimSLPDQYNtvlgQRGFILSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGRMCITIAHRLTTIK 576
55555553113333333111156667*******************************************99999**9999999876544 PP
>> TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.2 0.0 0.11 8.4 44 86 .. 396 438 .. 389 449 .. 0.86
2 ! 33.7 0.1 5.9e-11 4.4e-09 165 256 .. 514 604 .. 504 609 .. 0.85
Alignments for each domain:
== domain 1 score: 3.2 bits; conditional E-value: 0.11
TIGR03415 44 sldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkde 86
l+ e+G ++G +GsGk+++ + + ++ + + Gk+l+++e
MMSYN1_0372 396 YLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNE 438
58999******************99999999999999999876 PP
== domain 2 score: 33.7 bits; conditional E-value: 5.9e-11
TIGR03415 165 lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaim..egGrivqlgtpeeivlkP 256
lsGG +qr+ +ar f + d++++de sald ++ +++qd l el k + + ++h l +k ++i ++ +g ivq gt +e+ ++P
MMSYN1_0372 514 LSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIK--GRMCITIAHRLTT-IKNVDHIYVLgaNGTGIVQSGTFDELKKQP 604
9******************************************99976..3667788999975.666677777632455699999999988888 PP
>> TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.1 0.0 0.00035 0.026 9 78 .. 380 461 .. 372 492 .. 0.72
2 ! 23.0 0.0 8.8e-08 6.5e-06 162 216 .. 514 570 .. 477 603 .. 0.79
Alignments for each domain:
== domain 1 score: 11.1 bits; conditional E-value: 0.00035
TIGR03719 9 rvskvvppkkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegik............vGyleqePk 78
+ s +p++ ++ +l+f +g +G+ G+Gk+t+ k++ +G++l++++++ +Gy+eqeP+
MMSYN1_0372 380 SFSYPKKPERIVIPPTYLTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINNEYNlnrinlpayldhIGYVEQEPQ 461
5555567899999999999999999999999999999998888777777777777666654111111111122566666665 PP
== domain 2 score: 23.0 bits; conditional E-value: 8.8e-08
TIGR03719 162 lsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey.kGtv.vavth 216
lsGG+k+r+ ++r++l++Pd+++lde t ld + ++ l e kG + + ++h
MMSYN1_0372 514 LSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELiKGRMcITIAH 570
9******************************98777777777776524433144555 PP
>> TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.5 0.0 0.031 2.3 22 62 .. 397 435 .. 389 451 .. 0.83
2 ! 23.9 0.1 4.1e-08 3e-06 404 467 .. 514 576 .. 472 594 .. 0.85
Alignments for each domain:
== domain 1 score: 4.5 bits; conditional E-value: 0.031
TIGR02633 22 lklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilf 62
l+ + G+ ++ G+ G+Gk+t+ k+l y dG+il
MMSYN1_0372 397 LTFEKGKSYAFVGQTGSGKTTIAKLLLRFYAP--TDGKILI 435
7889999999****************998864..3566655 PP
== domain 2 score: 23.9 bits; conditional E-value: 4.1e-08
TIGR02633 404 lsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevl 467
lsGG++q+ v+a+++l +p v+ilde t +d ei + +l++ i ++ l+ +
MMSYN1_0372 514 LSGGQKQRLVIARVFLKDPDVVILDEATSALDNVVEKEIQDKLDELIKGR-MCITIAHRLTTIK 576
89******************************99999**99999998654.4556666666554 PP
>> TIGR00956 3a01205: pleiotropic drug resistance family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.1 0.0 4.9e-09 3.6e-07 783 941 .. 396 552 .. 338 589 .. 0.74
Alignments for each domain:
== domain 1 score: 26.1 bits; conditional E-value: 4.9e-09
TIGR00956 783 dGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngr.klds....sFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekn 875
++ Gk A +G+ G Gktt+ L t+g++l+n + +l+ ++ iGYv+q+ + t + +++s + +ev k+ k+
MMSYN1_0372 396 YLTFEKGKSYAFVGQTGSGKTTIAKLLLRF---YAPTDGKILINNEyNLNRinlpAYLDHIGYVEQEP-QILYGTFLDNIKYSKFDATDEEVIKACKK 489
4456779999************99888644...233455555543312222112268889*****986.56678999**********99999888665 PP
TIGR00956 876 .eyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsi 941
e + +++l + + v+G G L+ q++rl i+ P ++ lDe ts LD i
MMSYN1_0372 490 aELHDFIMSL---PDQYNTVLGQRGFILSGGQKQRLVIARVFLKDP-DVVILDEATSALDNVVEKEI 552
1666666654...566789********************99999**.6788*********8666555 PP
>> TIGR00630 uvra: excinuclease ABC subunit A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.1 0.2 1.5e-08 1.1e-06 821 908 .. 506 589 .. 486 601 .. 0.84
Alignments for each domain:
== domain 1 score: 25.1 bits; conditional E-value: 1.5e-08
TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidlGPeGG 908
lGq LsGG qr+ +a+ + k + ilDe t L k++ + l++l+ kG + i h l ik+ D+i lG +G
MMSYN1_0372 506 VLGQRGFILSGGQKQRLVIARVFLKD---PDVVILDEATSALDNVVEKEIQDKLDELI-KGRMCITIAHRLTTIKNVDHIYVLGANGT 589
49******************999875...6799*********9877788888999998.69**********************98773 PP
>> TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.1 0.0 0.0053 0.39 26 62 .. 401 437 .. 389 449 .. 0.86
2 ! 14.2 0.0 7.3e-05 0.0054 142 186 .. 514 561 .. 504 606 .. 0.70
Alignments for each domain:
== domain 1 score: 8.1 bits; conditional E-value: 0.0053
TIGR02323 26 pGevlgivGesGsGkstllkalaarlladaGevtyes 62
G+ + vG++GsGk+t+ k l ++++G++ ++
MMSYN1_0372 401 KGKSYAFVGQTGSGKTTIAKLLLRFYAPTDGKILINN 437
588899****************999999999987665 PP
== domain 2 score: 14.2 bits; conditional E-value: 7.3e-05
TIGR02323 142 fsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvr 186
+sGG +qrl iar+++ p +v++ e t l v + + l +l++
MMSYN1_0372 514 LSGGQKQRLVIARVFLKDPDVVILdEATSALDNVVEKEIqdKLDELIK 561
79********************99999*99955433332245555555 PP
>> TIGR03499 FlhF: flagellar biosynthesis protein FlhF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.6 0.1 1.2e-06 8.8e-05 195 223 .. 399 426 .. 388 435 .. 0.82
Alignments for each domain:
== domain 1 score: 20.6 bits; conditional E-value: 1.2e-06
TIGR03499 195 lekggviaLvGptGvGKTTTlAKLAarfv 223
ekg+ +a+vG+tG+GKT T+AKL rf
MMSYN1_0372 399 FEKGKSYAFVGQTGSGKT-TIAKLLLRFY 426
47888************7.6***988876 PP
>> TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.4 0.0 0.00078 0.058 143 175 .. 401 434 .. 396 454 .. 0.77
2 ? -2.4 0.0 6.2 4.6e+02 110 138 .. 470 497 .. 464 517 .. 0.73
Alignments for each domain:
== domain 1 score: 10.4 bits; conditional E-value: 0.00078
TIGR02788 143 akkniiisGgtgsgKTTflkalvkli.PkeeRli 175
++k+ +G tgsgKTT+ k l+++ P++ +++
MMSYN1_0372 401 KGKSYAFVGQTGSGKTTIAKLLLRFYaPTDGKIL 434
56777789**************997426666654 PP
== domain 2 score: -2.4 bits; conditional E-value: 6.2
TIGR02788 110 aveestelsdadeellellkagdikeFlk 138
+++ s + ++dee++++ k+ ++++F+
MMSYN1_0372 470 NIKYS-KFDATDEEVIKACKKAELHDFIM 497
45444.48899999****9999****985 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (617 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 413 (0.0920232); expected 89.8 (0.02)
Passed bias filter: 220 (0.0490196); expected 89.8 (0.02)
Passed Vit filter: 86 (0.0191622); expected 4.5 (0.001)
Passed Fwd filter: 61 (0.0135918); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 61 [number of targets reported over threshold]
# CPU time: 0.88u 0.21s 00:00:01.09 Elapsed: 00:00:00.40
# Mc/sec: 2215.10
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0372 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0373 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0373.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0373/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0373 [L=535]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (535 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 330 (0.0735294); expected 89.8 (0.02)
Passed bias filter: 93 (0.0207219); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.19
# Mc/sec: 4043.59
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0373 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0375 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0375.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0375/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0375 [L=246]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (246 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 452 (0.100713); expected 89.8 (0.02)
Passed bias filter: 112 (0.0249554); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1766.33
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0375 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0376 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0376.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0376/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0376 [L=104]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.012 13.7 0.1 0.014 13.5 0.1 1.2 1 TIGR04274 hypoxanDNAglyco: DNA-deoxyinosine glycosylase
Domain annotation for each model (and alignments):
>> TIGR04274 hypoxanDNAglyco: DNA-deoxyinosine glycosylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.5 0.1 3.2e-06 0.014 41 93 .. 48 100 .. 38 104 .] 0.91
Alignments for each domain:
== domain 1 score: 13.5 bits; conditional E-value: 3.2e-06
TIGR04274 41 leslleidasknYeeRiellkrnkialWDvlaaceRegsldskikdevpneik 93
++sl++ +++k e+ +e+l +++i +WD l++ + +++ + ++de n+++
MMSYN1_0376 48 IGSLIKKQTKKLSEKEVEQLVNEQIVIWDKLEENNYKKNIPTFLCDECWNTLT 100
6788889999999999*******************************999886 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (104 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 316 (0.07041); expected 89.8 (0.02)
Passed bias filter: 176 (0.0392157); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 786.04
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0376 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0377 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0377.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0377/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0377 [L=433]
Description: Obg_CgtA: Obg family GTPase CgtA 5=Equivalog Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-125 416.2 2.9 2.4e-125 415.9 2.9 1.1 1 TIGR02729 Obg_CgtA: Obg family GTPase CgtA
3.4e-23 79.2 1.6 8.3e-23 78.0 1.6 1.7 1 TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal
1.7e-17 61.5 7.0 3.8e-15 53.8 7.0 2.7 1 TIGR00092 TIGR00092: GTP-binding protein YchF
3.6e-16 56.9 0.0 5.2e-16 56.4 0.0 1.2 1 TIGR03156 GTP_HflX: GTP-binding protein HflX
1.1e-14 52.5 0.0 2.3e-14 51.5 0.0 1.5 1 TIGR00231 small_GTP: small GTP-binding protein domain
8.2e-14 49.4 0.1 2.2e-13 48.0 0.1 1.4 1 TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
5.8e-13 46.8 0.2 9.3e-13 46.1 0.2 1.3 1 TIGR00436 era: GTP-binding protein Era
7.2e-10 36.1 1.6 1.2e-09 35.4 1.6 1.3 1 TIGR00437 feoB: ferrous iron transport protein B
1.7e-09 35.0 0.0 2.6e-09 34.3 0.0 1.2 1 TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation
3.5e-07 27.6 1.1 6.2e-07 26.8 1.1 1.4 1 TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
8.2e-07 26.6 4.2 0.00063 17.1 0.1 2.3 2 TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding prote
6.4e-05 20.2 2.3 0.0016 15.7 0.0 2.2 2 TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
0.0001 20.0 0.3 0.00042 18.0 0.3 1.9 1 TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding prote
0.0022 15.1 1.5 0.32 8.0 0.0 2.3 2 TIGR00750 lao: LAO/AO transport system ATPase
Domain annotation for each model (and alignments):
>> TIGR02729 Obg_CgtA: Obg family GTPase CgtA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 415.9 2.9 7.6e-128 2.4e-125 1 328 [. 3 331 .. 3 332 .. 0.97
Alignments for each domain:
== domain 1 score: 415.9 bits; conditional E-value: 7.6e-128
TIGR02729 1 fvDevkievkaGkGGnGvvsfrrekyvpkGGPdGGdGGkGGsvileadenlntLldfrykkklkaenGenGkgknrsGkkgedlvikvPvGtvvldee 98
fvD +++ +kaGkGG+G+vsf + +vp+GGP+GGdGG+GGsv++ de+ ++Lld++ +kk++a++G +G+ kn++G+kged +ikvPvGt+++d++
MMSYN1_0377 3 FVDFADLIIKAGKGGDGAVSFLHALFVPNGGPNGGDGGDGGSVYFLGDEGKHSLLDLKLQKKYSAQDGFKGDIKNMHGAKGEDKIIKVPVGTILYDKK 100
99************************************************************************************************ PP
TIGR02729 99 tgelladlteegqkllvakgGkgGlGNakfksstnraPrkaekGeegeerelkleLklladvglvGlpnaGkStllsavsaakpkiadYpFtTlvPnL 196
t+++lad++e+++ +l+akgGkgG+GNa+f++s+n+aP+++e Ge g+e e++ eLk+ladvg+vGlpnaGkStll+a+s++kp +adYpFtT++P+L
MMSYN1_0377 101 TNTILADINENNKLVLIAKGGKGGKGNARFANSRNKAPTIFEAGELGQEFEIRAELKVLADVGFVGLPNAGKSTLLRAISNSKPVVADYPFTTITPQL 198
************************************************************************************************** PP
TIGR02729 197 GvveveeeksfvlaDiPgliegasegagLGleFLkHiertrvllhlidlseedek.dpvedleviekeLkkyseeLaekpelvvlnkidlleeeelee 293
Gv +++++++f++aD+Pgli+gas g+gLG++FLkHier+ v++h+id+s + + d+++++e+i++eLk+y+ +L+++pe++vlnk+dl e ++l+
MMSYN1_0377 199 GVARTKNNDTFIVADLPGLIQGASLGKGLGHQFLKHIERCLVICHIIDASGNFGSeDIIKNYELIRDELKAYNLNLEKRPEIIVLNKMDLDE-AQLNL 295
*************************************************9876555**********************************66.89999 PP
TIGR02729 294 llkelkeel.ekkvlaisaltkegleellkkllell 328
l +++ + + +kkv+ is l+ke++++ll ++e l
MMSYN1_0377 296 LDEKIINYFkDKKVVRISGLKKENIDQLLFMIYEEL 331
999999998899****************99998765 PP
>> TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.0 1.6 2.6e-25 8.3e-23 2 69 .. 364 431 .. 363 432 .. 0.98
Alignments for each domain:
== domain 1 score: 78.0 bits; conditional E-value: 2.6e-25
TIGR03595 2 eiereedgvfvVeGkkierlvkktdfnndeavgrlarkLkklGveeaLrkaGakaGdtVrIgdveFew 69
++ +++++++++ G++i ++++k+++++++++ ++++kLk+ Gv e+L+k+G+k+Gd V++ d+e+ew
MMSYN1_0377 364 QVYNKGNNRWEIAGETIFKIYQKFPIWTEDNLLMFNEKLKETGVYETLVKKGIKKGDFVKVFDYELEW 431
899***************************************************************** PP
>> TIGR00092 TIGR00092: GTP-binding protein YchF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 53.8 7.0 1.2e-17 3.8e-15 5 139 .. 162 273 .. 159 374 .. 0.68
Alignments for each domain:
== domain 1 score: 53.8 bits; conditional E-value: 1.2e-17
TIGR00092 5 aGivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnvpderldkLaeivksekvvpttlefvDiaGLvkGaskGeGLGnkfLaniRevdaiv 102
G vGLpn Gkstl +ai ++k +a+yPf+ti p+ gv + + t+ + D+ GL++Gas G+GLG +fL +i i+
MMSYN1_0377 162 VGFVGLPNAGKSTLLRAISNSKP-VVADYPFTTITPQLGVARTKN----------------NDTFIVADLPGLIQGASLGKGLGHQFLKHIERCLVIC 242
699******************98.8*************9865433................3578899****************************** PP
TIGR00092 103 hvvRc...fedddivhvegkvdPvrDlevineeLilaDle 139
h++ + f +di+ ++ e+i +eL +l+
MMSYN1_0377 243 HIIDAsgnFGSEDII---------KNYELIRDELKAYNLN 273
**9752235555555.........4444444444444444 PP
>> TIGR03156 GTP_HflX: GTP-binding protein HflX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.4 0.0 1.6e-18 5.2e-16 189 350 .. 159 330 .. 147 331 .. 0.78
Alignments for each domain:
== domain 1 score: 56.4 bits; conditional E-value: 1.6e-18
TIGR03156 189 vptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeeeevlltDTVGFir..kLPheLveaFkaTLeevaeadlllhvvDasdeeae 284
+ v++vG NaGKstll+a+ +++ +++d F+T+ p++ + +++++++++D G i+ +L + L + F L+ +++ +++h++Das + +
MMSYN1_0377 159 LADVGFVGLPNAGKSTLLRAISNSKPVVADYPFTTITPQLGVARTKNNDTFIVADLPGLIQgaSLGKGLGHQF---LKHIERCLVICHIIDASGNFGS 253
56899*******************************************************8556999999998...88888899********976554 PP
TIGR03156 285 eqi....eaveevLe..elgaeeipvllvlNkidkle......eeeleeleekk......eeavlvsAkkgegleeLleaieea 350
e i e +++ L+ +l++e+ p ++vlNk+d+ e + ek ++ v +s k+e++++Ll +i e+
MMSYN1_0377 254 EDIiknyELIRDELKayNLNLEKRPEIIVLNKMDLDEaqlnllD-------EKIinyfkdKKVVRISGLKKENIDQLLFMIYEE 330
444000044444444334667777**********8774444432.......222222333679**************9988775 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.5 0.0 7.2e-17 2.3e-14 5 159 .. 161 324 .. 158 329 .. 0.86
Alignments for each domain:
== domain 1 score: 51.5 bits; conditional E-value: 7.2e-17
TIGR00231 5 kivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldv......eeg 96
+++vG +++GKstLl ++ k ++++p++t + + + ++ ++ + D++G ++ + + + + + +e + ++ +++d+ e++
MMSYN1_0377 161 DVGFVGLPNAGKSTLLRAISNSK-PVVADYPFTTITPQLGVARTKNND-TFIVADLPGLIQGASLGKGLGHQFLKHIERCLVICHIIDAsgnfgsEDI 256
69*********************.888899*77777777767777655.7**************************************9333333345 PP
TIGR00231 97 lekqtkeiiheakkkgv.....piilvvnKiDlkd.dlktkvkslfaklnaepiielsaetgknidklf 159
k ++ i++e+k+++ p i+v+nK+Dl + +l + ++++ + ++++++s + +nid+l
MMSYN1_0377 257 I-KNYELIRDELKAYNLnlekrPEIIVLNKMDLDEaQLNLLDEKIINYFKDKKVVRISGLKKENIDQLL 324
5.8889999999998763333378***********999999*************************986 PP
>> TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.0 0.1 6.7e-16 2.2e-13 3 166 .. 162 337 .. 160 354 .. 0.72
Alignments for each domain:
== domain 1 score: 48.0 bits; conditional E-value: 6.7e-16
TIGR03594 3 vaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkg.kefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeD.. 97
v vG pN GKStL+ + + k +v+d+p +T + g a++k+ +fi+ D +Gl + ++l k + +q + ie + vi+ ++da + +eD
MMSYN1_0377 162 VGFVGLPNAGKSTLLRAIS-NSKPVVADYPFTTITPQLGVARTKNnDTFIVADLPGL-IQGASLGKGLGHQFLKHIERCLVICHIIDASGNFGSEDii 257
5679999999999996665.5567999999999999999999776478999999999.8889999999999999999999999999998776666533 PP
TIGR03594 98 ...eeiaklLrksk.....kpvilvvNKvdnkkeeaeaae...fyslGlgevlaiSaehgrgikdLldeileelpeeeee 166
e i + L+ ++ +p i+v+NK+d ++++ ++ + + + ++v+ iS ++++i++Ll i+eel+ ++++
MMSYN1_0377 258 knyELIRDELKAYNlnlekRPEIIVLNKMDLDEAQLNLLDekiINYFKDKKVVRISGLKKENIDQLLFMIYEELKVAKKQ 337
22234444554443333338999999999999888774331213456667899999999999999999999999777663 PP
>> TIGR00436 era: GTP-binding protein Era
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.1 0.2 2.9e-15 9.3e-13 3 167 .. 162 335 .. 160 362 .. 0.77
Alignments for each domain:
== domain 1 score: 46.1 bits; conditional E-value: 2.9e-15
TIGR00436 3 vailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasq.iifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknked... 96
v+ +G pn+GKSTLl + + k +v + + TT g+ ++++ i D PGl + +l++ l ++ k ++ +i ++d++ + +++
MMSYN1_0377 162 VGFVGLPNAGKSTLLRAISNSKP-VVADYPFTTITPQLGVARTKNNDtFIVADLPGLIQ-GASLGKGLGHQFLKHIERCLVICHIIDASGNFGSEdii 257
899**************999885.7899999999988888877777769999*****76.578999999999999************99988876122 PP
TIGR00436 97 ...ellleklqk.....lkapvvlalnkldnkekdkllelidkeasllefkeiveisalkgenveelkaiveaklregp 167
el+ ++l+ k+p +++lnk+d e + +l +k + ++ k++v+is lk+en+++l +++++l+ ++
MMSYN1_0377 258 knyELIRDELKAynlnlEKRPEIIVLNKMDLDEAQLNLLD-EKIINYFKDKKVVRISGLKKENIDQLLFMIYEELKVAK 335
2224445555542222257888889999988765544433.3444455556***********************98765 PP
>> TIGR00437 feoB: ferrous iron transport protein B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.4 1.6 3.7e-12 1.2e-09 1 188 [. 166 362 .. 166 417 .. 0.72
Alignments for each domain:
== domain 1 score: 35.4 bits; conditional E-value: 3.7e-12
TIGR00437 1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelkgedieiv.DlPGiYsLttvsldEkvardyllnekadLvv.nvvdas......nleRnLy 90
G pN GKstl+ a+++s+ v+ +p +T+ + g +k++d iv DlPG+ ++ sl +++l++ + Lv+ +++das + +n
MMSYN1_0377 166 GLPNAGKSTLLRAISNSKPVVADYPFTTITPQLGVARTKNNDTFIVaDLPGL--IQGASLGKGLGHQFLKHIERCLVIcHIIDASgnfgseDIIKNYE 261
77**********************************99998866655****8..78999999*******99777776649***975444445788887 PP
TIGR00437 91 lt...lQllelgi...plilalNlvdeAekkgirideekLeerLGvpvvplsatkgrgieelkkaide..........ekaiklvekkkraieilkea 172
l l +l++ p i++lN++d+ e + +de+ ++ +vv++s k+++i++l i e e+ k+
MMSYN1_0377 262 LIrdeLKAYNLNLekrPEIIVLNKMDLDEAQLNLLDEKIINYFKDKKVVRISGLKKENIDQLLFMIYEelkvakkqplW-------------ELDKNN 346
752224444444322368**********************************************999533333333331.............333333 PP
TIGR00437 173 eslaevkeklkelkqk 188
++ + + k +e+k+
MMSYN1_0377 347 DQDEIAIYKFEEQKED 362
3322222222222222 PP
>> TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.3 0.0 8.2e-12 2.6e-09 9 173 .. 161 337 .. 154 353 .. 0.80
Alignments for each domain:
== domain 1 score: 34.3 bits; conditional E-value: 8.2e-12
TIGR03918 9 hialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleele.. 104
++++G NaGKS+l+ a+ + +v+d+p tT p ++ ++ D +Gl ++LG+ ++ + +e++ ++ ++da+ + + +
MMSYN1_0377 161 DVGFVGLPNAGKSTLLRAISNS-KPVVADYPFTTITPQLGVARTKNNDTFIVADLPGLIQGASLGKGLGHQFLKHIERCLVICHIIDASGNFGSEDii 257
689***************9986.589************************************************************987554433211 PP
TIGR03918 105 ...eelleelke.....kkipvivvlnkidlkeeeke...keklekkkeeevvlvsakekegieelkealiellpeeaee 173
e + +elk+ +k p i+vlnk+dl e++ + ++ ++ k+++vv +s +ke+i++l + e+l+ +++
MMSYN1_0377 258 knyELIRDELKAynlnlEKRPEIIVLNKMDLDEAQLNlldEKIINYFKDKKVVRISGLKKENIDQLLFMIYEELKVAKKQ 337
1113344444441111166799**********9998887455566677889999***************99998777444 PP
>> TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.8 1.1 1.9e-09 6.2e-07 211 390 .. 161 355 .. 146 385 .. 0.66
Alignments for each domain:
== domain 1 score: 26.8 bits; conditional E-value: 1.9e-09
TIGR00450 211 klaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedl.eleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd. 306
+ vG +N+GKS Ll a+++ + +V+d++ tt ++ + ++ + D G+ + a+ lG ++ lk i+++ ++ ++Das + +d
MMSYN1_0377 161 DVGFVGLPNAGKSTLLRAISN-SKPVVADYPFTTITPQLGVArTKNNDTFIVADLPGLIQGASLGKGLG-HQFLKHIERCLVICHIIDASGNFGSEDi 256
5778**************987.699********96543333304456678899*********9999999.5689***************998766653 PP
TIGR00450 307 ....eliit......lkkkkkdlllvlNKiDLa..eleilkselkltv...sllsakqlkikelvdlltekinalyskekdeldlalisssea.lill 388
eli + l+ +k++ ++vlNK+DL +l+ l + + +++ ++ ++ ke +d+l i + ++ k++ l +++ + i++
MMSYN1_0377 257 iknyELIRDelkaynLNLEKRPEIIVLNKMDLDeaQLNLLDE-KIINYfkdKKVVRISGLKKENIDQLLFMIYEELKVAKKQPLWELDKNNDQdEIAI 353
32225555422222256789************9763444443.3333311123333444444555555555544444433332333444443333444 PP
TIGR00450 389 ek 390
k
MMSYN1_0377 354 YK 355
33 PP
>> TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.1 0.1 2e-06 0.00063 121 174 .. 162 218 .. 97 224 .. 0.81
2 ! 10.5 0.9 0.00021 0.068 46 103 .. 274 332 .. 267 354 .. 0.78
Alignments for each domain:
== domain 1 score: 17.1 bits; conditional E-value: 2e-06
TIGR03596 121 alvvGiPNvGKStliNrlakkkvakvgnkpgvTksqq....wiklskeleLlDtPGil 174
+ vG+PN GKStl+ +++ k v++ p T + q + k ++++ + D PG++
MMSYN1_0377 162 VGFVGLPNAGKSTLLRAISNSKP-VVADYPFTTITPQlgvaRTKNNDTFIVADLPGLI 218
5579***********99988776.5888886555443222256667789999***986 PP
== domain 2 score: 10.5 bits; conditional E-value: 0.00021
TIGR03596 46 vknkprlivlnkaDladpekt...kkwlkyfeekgkkalavnakkkkkvkkilkaikkllk 103
++++p +ivlnk+Dl + + + +k+++yf++ kk++ ++ kk+++ ++l +i + lk
MMSYN1_0377 274 LEKRPEIIVLNKMDLDEAQLNlldEKIINYFKD--KKVVRISGLKKENIDQLLFMIYEELK 332
5789***********888764333789999995..56899999999999888776665554 PP
>> TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.7 0.0 4.9e-06 0.0016 156 233 .. 160 235 .. 148 245 .. 0.80
2 ? 2.4 2.3 0.053 17 89 154 .. 274 332 .. 254 339 .. 0.73
Alignments for each domain:
== domain 1 score: 15.7 bits; conditional E-value: 4.9e-06
TIGR03597 156 kdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTld....lieipldkesvllDtpGiineeqianllskkdlkki 233
dv +vG N GKS+l+ ++ + k ++ +p TT+ + + + ++ ++ D pG+i+ ++ + l ++ lk i
MMSYN1_0377 160 ADVGFVGLPNAGKSTLLRAISNS----KP--VVADYPFTTITpqlgVARTKNNDTFIVADLPGLIQGASLGKGLGHQFLKHI 235
6899************9998733....33..4677888887654447777888889999*******9999999988888877 PP
== domain 2 score: 2.4 bits; conditional E-value: 0.053
TIGR03597 89 vkenkvllvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellelikkare 154
+++ + ++v NK+dl ++ +l+ + e + +++k+ ++++ +s kk+++++ll +i ++ +
MMSYN1_0377 274 LEKRPEIIVLNKMDL--DEAQLNLLDEKIINYFKD-----KKVVRISGLKKENIDQLLFMIYEELK 332
4677889*******9..555666677777777664.....56778888888888888888766554 PP
>> TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.0 0.3 1.3e-06 0.00042 18 182 .. 159 324 .. 152 328 .. 0.68
Alignments for each domain:
== domain 1 score: 18.0 bits; conditional E-value: 1.3e-06
TIGR03598 18 lpeiafaGrSNvGKSsliNaLtnrkklartSktPGr..Tqlinffev..neelrlvDlPGY.GyakvskeekekwqklieeYLekrenLkgv..vllv 108
l+++ f+G N+GKS+l+ a+ n+k + ++ P T ++ + + n+++++ DlPG a k +++ k+ie+ L ++ + + +
MMSYN1_0377 159 LADVGFVGLPNAGKSTLLRAISNSKPV--VADYPFTtiTPQLGVARTknNDTFIVADLPGLiQGASLGKGLGHQFLKHIERCLVICHIIDASgnFGSE 254
5789*********************65..455555411556666665325688889****72236666666777777777766666655443114445 PP
TIGR03598 109 DirhelkelDlelle.llkeakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelk 182
Di ++++ + el + l+ +k+p ++vl+K+D l++++l+ +k+ + +k++ +v+ +S lkke+i++l
MMSYN1_0377 255 DIIKNYELIRDELKAyNLNLEKRPEIIVLNKMD-LDEAQLNLLDEKIINYFKDK----KVVRISGLKKENIDQLL 324
555544443333332034555788889999999.77888888888888877777....89999999999999986 PP
>> TIGR00750 lao: LAO/AO transport system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.0 0.0 0.00099 0.32 37 55 .. 162 180 .. 152 183 .. 0.89
2 ! 5.3 0.9 0.0069 2.2 175 255 .. 279 349 .. 263 379 .. 0.71
Alignments for each domain:
== domain 1 score: 8.0 bits; conditional E-value: 0.00099
TIGR00750 37 vGltGvPGaGkstlvekli 55
vG+ G+P aGkstl+ ++
MMSYN1_0377 162 VGFVGLPNAGKSTLLRAIS 180
9**************9876 PP
== domain 2 score: 5.3 bits; conditional E-value: 0.0069
TIGR00750 175 DivvvnkaDkeeaekerlarlelsldleelferekgWrPkvlktsavegrGikelvdaieehkkvlkksGkleekrrersv 255
+i+v+nk D +ea+ l+l e++++ k kv+++s+++++ i++l i e kv+kk + e + + +
MMSYN1_0377 279 EIIVLNKMDLDEAQ--------LNLLDEKIINYFK--DKKVVRISGLKKENIDQLLFMIYEELKVAKKQPLWELDKNNDQD 349
79999999999999........2222222222211..348*********************99999998877755544444 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (433 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 234 (0.052139); expected 89.8 (0.02)
Passed bias filter: 148 (0.0329768); expected 89.8 (0.02)
Passed Vit filter: 30 (0.00668449); expected 4.5 (0.001)
Passed Fwd filter: 14 (0.00311943); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 14 [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 2391.56
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0377 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0378 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0378.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0378/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0378 [L=245]
Description: NAD+ synthetase 5=Equivalog Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.4e-73 243.0 0.1 7.3e-73 242.8 0.1 1.0 1 TIGR00552 nadE: NAD+ synthetase
1.6e-08 32.2 0.0 9.5e-05 19.8 0.0 2.3 2 TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing),
3.2e-05 20.9 0.2 0.00026 17.9 0.0 2.1 2 TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-m
0.00053 17.0 0.0 0.00059 16.9 0.0 1.1 1 TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydr
0.0021 15.6 0.0 0.0088 13.6 0.0 1.9 2 TIGR00364 TIGR00364: queuosine biosynthesis protein QueC
0.0027 15.3 0.1 0.0041 14.7 0.1 1.5 1 TIGR00268 TIGR00268: TIGR00268 family protein
0.0048 14.3 0.7 0.01 13.2 0.3 1.8 2 TIGR03573 WbuX: N-acetyl sugar amidotransferase
0.0077 14.1 0.0 0.025 12.4 0.0 1.8 2 TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
Domain annotation for each model (and alignments):
>> TIGR00552 nadE: NAD+ synthetase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 242.8 0.1 1.3e-75 7.3e-73 2 241 .. 5 237 .. 4 245 .] 0.91
Alignments for each domain:
== domain 1 score: 242.8 bits; conditional E-value: 1.3e-75
TIGR00552 2 likvveeledflkekvkksgakgvvlGlSGGiDSavvaalavealgkeevlalilpesnqaseqdvqdalalveklgietkeikiepiaaslqakkek 99
l++++++l +f+++ vkk++ gvv+G+SGGiDSavva la+ a+ ++ +++ +++ ++s+ d a +l++ +++++e+++e ++ +++ ++ +
MMSYN1_0378 5 LKQYLDYLVEFIQQTVKKAKCDGVVVGISGGIDSAVVANLAKLAFP--NNYLTVWMPI-YSSQLDYDCANELIKTNQLKNIEVNLEASFDAFKNSFSN 99
5678999***************************************..4555555555.45899********************************** PP
TIGR00552 100 lseekdklakgNlkaRlRmallyaianklnlLvlgTgnksElvlGyfTkyGDgacdlaplaellKtqvkeLakelnvPeeiiekaPtAdLlegqtDEe 197
l+e+ + la N kaRlRm++ly+ia+ ++LvlgT+n E +GyfTkyGDg++d+ p+ +llK++vk+ a+ lnvPe ii+++PtA+L+egqtDE
MMSYN1_0378 100 LDEKPNLLAISNAKARLRMTTLYTIAQTKKYLVLGTDNLDEWHIGYFTKYGDGGVDVVPIIHLLKSEVKKAAQILNVPEIIINRKPTAGLWEGQTDEG 197
************************************************************************************************** PP
TIGR00552 198 elgitYdelDelLkgleelsqkkeevvkkieklvqksehKrelP 241
e+g++Yd +D +L ++++ + k k+i+ l + s+hKr+l
MMSYN1_0378 198 EIGFSYDLIDSYLLKQNNDPELK----KRIDYLHKISKHKRSLA 237
*************9844433333....47************954 PP
>> TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.8 0.0 1.7e-07 9.5e-05 6 49 .. 12 58 .. 7 105 .. 0.70
2 ! 10.3 0.0 0.00013 0.075 158 190 .. 156 188 .. 153 199 .. 0.92
Alignments for each domain:
== domain 1 score: 19.8 bits; conditional E-value: 1.7e-07
TIGR00884 6 aveeirekvgdak...viialsGGvdssvaavllhkaigdrltavfv 49
ve i+++v++ak v++++sGG+ds+v+a l++ a ++ +v++
MMSYN1_0378 12 LVEFIQQTVKKAKcdgVVVGISGGIDSAVVANLAKLAFPNNYLTVWM 58
56777777777554449**********************99998875 PP
== domain 2 score: 10.3 bits; conditional E-value: 0.00013
TIGR00884 158 vePlrelfkdevrklgkelGlpeelvarqPfPG 190
v P+ +l k ev+k ++ l +pe +++r+P G
MMSYN1_0378 156 VVPIIHLLKSEVKKAAQILNVPEIIINRKPTAG 188
56999*************************877 PP
>> TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.9 0.0 4.5e-07 0.00026 3 55 .. 28 77 .. 26 114 .. 0.78
2 ? 0.8 0.0 0.074 41 164 184 .. 156 176 .. 154 189 .. 0.82
Alignments for each domain:
== domain 1 score: 17.9 bits; conditional E-value: 4.5e-07
TIGR00420 3 vivglsgGvDssvsalllkkqgy.evkgvylklweedekeddleCssaedlkda 55
v+vg+sgG+Ds+v a l k ++ + v++ +++++ + d C++ e +k
MMSYN1_0378 28 VVVGISGGIDSAVVANLAKLAFPnNYLTVWMPIYSSQLDYD---CAN-ELIKTN 77
9*********************968899******9999999...766.333332 PP
== domain 2 score: 0.8 bits; conditional E-value: 0.074
TIGR00420 164 lfPlgellKkevrqlAkeanl 184
+ P+ +llK+ev++ A+ +n+
MMSYN1_0378 156 VVPIIHLLKSEVKKAAQILNV 176
679999999999999987765 PP
>> TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.9 0.0 1e-06 0.00059 229 371 .. 4 145 .. 1 196 [. 0.75
Alignments for each domain:
== domain 1 score: 16.9 bits; conditional E-value: 1e-06
TIGR01536 229 seeelveelrelledavkkrlvadvpvgvllSGGlDSslvaaiakkeaksevktFsigfe.dskdldeskaarkvadelgtehkevliseeevlkele 325
++++ + l e +++ vkk v vg +SGG+DS +va +ak +++ + ++ ++ s++ld + a+++ + +++ ++++ e+ +++++
MMSYN1_0378 4 NLKQYLDYLVEFIQQTVKKAKCDGVVVG--ISGGIDSAVVANLAKLAFPN--NYLTVWMPiYSSQLD-YDCANELIKTNQLKN--IEVNLEASFDAFK 94
5667777788888999998877666666..7**************99993..444555554455555.558888888766655..5566678899999 PP
TIGR01536 326 evilale...eptairasiplyllskl..arekgvkVvLsGeGaDElfgGY 371
+ + l+ +++ai+++ + ++ l + + + +vL+ + DE GY
MMSYN1_0378 95 NSFSNLDekpNLLAISNAKARLRMTTLytIAQTKKYLVLGTDNLDEWHIGY 145
999999987766777766666666554112222345777888888887777 PP
>> TIGR00364 TIGR00364: queuosine biosynthesis protein QueC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.6 0.0 1.6e-05 0.0088 2 77 .. 29 104 .. 28 122 .. 0.77
2 ? -1.0 0.0 0.46 2.6e+02 154 179 .. 157 182 .. 152 197 .. 0.69
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 1.6e-05
TIGR00364 2 vvvlSGGlDSttvllialkegeeveavtFdYgqrhskElevAkkiaealgiketvidlsllkelgksaLtkeeeel 77
vv +SGG+DS++v+ +a+ + + + + + + ++A+++ ++ ++k++ ++l+ + k++ + +e++
MMSYN1_0378 29 VVGISGGIDSAVVANLAKLAFPNNYLTVWMPIYSSQLDYDCANELIKTNQLKNIEVNLEASFDAFKNSFSNLDEKP 104
899****************9976655555555567788999*******9999999999987777777766555544 PP
== domain 2 score: -1.0 bits; conditional E-value: 0.46
TIGR00364 154 aPlieltKaeivklakelgkldlvik 179
P+i+l K e+ k+a+ l++ +++i+
MMSYN1_0378 157 VPIIHLLKSEVKKAAQILNVPEIIIN 182
58888889888888888886555554 PP
>> TIGR00268 TIGR00268: TIGR00268 family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.7 0.1 7.3e-06 0.0041 8 83 .. 19 99 .. 9 198 .. 0.56
Alignments for each domain:
== domain 1 score: 14.7 bits; conditional E-value: 7.3e-06
TIGR00268 8 flke..fkkvliaysGGvdssllaavlsdag.levlait..vvspslspreledakkiakeigvkhel.vkidklapefken 83
+k+ + v++ sGG+ds+++a +++ a + l++ + s +l ++ +k+ + +++ +l d +++ f n
MMSYN1_0378 19 TVKKakCDGVVVGISGGIDSAVVANLAKLAFpNNYLTVWmpIYSSQLDYDCANELIKTNQLKNIEVNLeASFDAFKNSFS-N 99
444422459*****************998541555555411344333333344444433333333333134555555555.4 PP
>> TIGR03573 WbuX: N-acetyl sugar amidotransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.2 0.3 1.8e-05 0.01 47 122 .. 10 86 .. 2 141 .. 0.76
2 ? -2.0 0.0 0.8 4.5e+02 143 167 .. 157 181 .. 143 198 .. 0.82
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 1.8e-05
TIGR03573 47 eelvekikkkgesk.YD.ciigvSGGkDstyqahvlkkklGlnpLlvtvdpglntelgvkNlenlikklgvDlitlti 122
lve i+++ ++ D +++g+SGG Ds +a ++k + n L+v + p +++l + ++lik+ + +i++++
MMSYN1_0378 10 DYLVEFIQQTVKKAkCDgVVVGISGGIDSAVVANLAKLAFPNNYLTV-WMPIYSSQLDYDCANELIKTNQLKNIEVNL 86
555555555555444563689*******************9999999.668889999999999999977777666554 PP
== domain 2 score: -2.0 bits; conditional E-value: 0.8
TIGR03573 143 vpvdlaifasvykvAlkfnipliis 167
vp+ + +++ v k A+ +n+p ii
MMSYN1_0378 157 VPIIHLLKSEVKKAAQILNVPEIII 181
5777889999999999999999885 PP
>> TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.4 0.0 4.5e-05 0.025 2 101 .. 28 131 .. 27 140 .. 0.66
2 ? -1.5 0.0 0.88 4.9e+02 8 26 .. 152 170 .. 151 180 .. 0.66
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 4.5e-05
TIGR02432 2 llvAvSGGvDSmaLlkllkelkeklkik....liaahvdHklreeskeeaeeveelckklkiklvvkkvevkakake.kkknleeaaRelRYkaleel 94
++v++SGG+DS + +l k +++ + + +d+ +e ++++++++ +l+ ++ k ++++ +++ + + +a +lR ++l +
MMSYN1_0378 28 VVVGISGGIDSAVVANLAKLAFPNNYLTvwmpIYSSQLDYDCANELI-KTNQLKNIEVNLEASFDAFKNSFSNLDEKpNLLAISNAKARLRMTTLYTI 124
79***********9999987776666554466666677777775544.45667777777777776666666653333034556666666888888888 PP
TIGR02432 95 akklkae 101
a+++k+
MMSYN1_0378 125 AQTKKYL 131
8775553 PP
== domain 2 score: -1.5 bits; conditional E-value: 0.88
TIGR02432 8 GGvDSmaLlkllkelkekl 26
GGvD + +++llk+ +k
MMSYN1_0378 152 GGVDVVPIIHLLKSEVKKA 170
7777777777777654443 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (245 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 260 (0.0579323); expected 89.8 (0.02)
Passed bias filter: 207 (0.046123); expected 89.8 (0.02)
Passed Vit filter: 34 (0.00757576); expected 4.5 (0.001)
Passed Fwd filter: 8 (0.00178253); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.21
# Mc/sec: 1675.38
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0378 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0379 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0379.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0379/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0379 [L=92]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-30 102.0 8.3 4e-30 101.8 8.3 1.1 1 TIGR04561 membra_charge: integral membrane protein
0.0031 14.5 3.5 0.0036 14.3 3.5 1.1 1 TIGR04370 glyco_rpt_poly: oligosaccharide repeat unit polyme
0.0096 13.0 0.1 0.0096 13.0 0.1 1.0 1 TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
Domain annotation for each model (and alignments):
>> TIGR04561 membra_charge: integral membrane protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 101.8 8.3 2.7e-33 4e-30 1 82 [] 5 90 .. 5 90 .. 0.97
Alignments for each domain:
== domain 1 score: 101.8 bits; conditional E-value: 2.7e-33
TIGR04561 1 slkgievfgiaiplevillvFaiiaglaLliYllnllvrkrkfl.....kkeeknneelkklkkiekekneideEIasilkkeKqkk 82
++k+ievfgiaip+++i++vF++iaglaL+i+++++l++k k++ kk++kn+++++k ++ie e+++ideEI+++lkkeKq++
MMSYN1_0379 5 NFKPIEVFGIAIPFWIIATVFGTIAGLALIIFIISFLRYKFKTRkkknsKKNQKNSNNIDK-QPIEVEISIIDEEIDEVLKKEKQNQ 90
689***************************************99999999***********.9**********************97 PP
>> TIGR04370 glyco_rpt_poly: oligosaccharide repeat unit polymerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.3 3.5 2.4e-06 0.0036 36 84 .. 18 66 .. 5 76 .. 0.78
Alignments for each domain:
== domain 1 score: 14.3 bits; conditional E-value: 2.4e-06
TIGR04370 36 lyelsdetyliiilgilifilgslflslskkskkrktkkkklskesisl 84
++ + + + i l+++ifi+++l +++++++kk+ +k+ k+s+++ ++
MMSYN1_0379 18 FWIIATVFGTIAGLALIIFIISFLRYKFKTRKKKNSKKNQKNSNNIDKQ 66
6888999999999999999999999999999999888887777777665 PP
>> TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.0 0.1 6.4e-06 0.0096 117 155 .. 17 72 .. 4 92 .] 0.63
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 6.4e-06
TIGR00367 117 liflldgvlesllllvllflyvvylkflvkverkqain.................d 155
+ ++ v++ +++l l++ + +l++ k+ +k++++
MMSYN1_0379 17 PFWIIATVFGTIAGLALIIFIISFLRYKFKTRKKKNSKknqknsnnidkqpieveI 72
3445566699********************99966655223333333333333330 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (92 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 555 (0.123663); expected 89.8 (0.02)
Passed bias filter: 198 (0.0441176); expected 89.8 (0.02)
Passed Vit filter: 31 (0.00690731); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 695.35
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0379 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0380 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0380.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0380/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0380 [L=365]
Description: nicotinate (nicotinamide) nucleotide adenylyltransferase 5=Equivalog Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-39 133.5 0.3 3.2e-39 132.9 0.3 1.3 1 TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide ad
5.3e-35 118.8 0.1 7.6e-35 118.3 0.1 1.3 1 TIGR00488 TIGR00488: putative HD superfamily hydrolase
1.2e-06 26.6 0.0 3.1e-06 25.3 0.0 1.7 1 TIGR00125 cyt_tran_rel: cytidyltransferase-like domain
1.3e-06 26.4 1.0 5.7e-06 24.4 0.0 2.1 2 TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltran
1.4e-05 22.9 0.0 3.4e-05 21.6 0.0 1.7 1 TIGR00277 HDIG: HDIG domain
4.4e-05 20.8 0.1 7.6e-05 20.0 0.1 1.4 1 TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylylt
0.00024 17.7 0.0 0.015 11.7 0.0 2.5 3 TIGR03319 RNase_Y: ribonuclease Y
Domain annotation for each model (and alignments):
>> TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 132.9 0.3 5e-42 3.2e-39 1 178 [. 7 174 .. 7 185 .. 0.91
Alignments for each domain:
== domain 1 score: 132.9 bits; conditional E-value: 5e-42
TIGR00482 1 lfgGsFdPihlgHlllaeealealdldklivvpsaispvkkteekassehRlamlklaiekepklevdeveierasksytidtlkelkkklkkaelal 98
lfgGsFdPih+ H++++++ e+l+ d+++++p + +p+k ++++s+ +Rl+ml+++ +k +++++ ++ei++++++ t++t+k++ k +++ ++ +
MMSYN1_0380 7 LFGGSFDPIHTDHVNIIKTCYEKLKFDEVWLIPAYLNPFKT-KQNSSIVDRLNMLEIIKNKFSYIKIYDYEIKNNKSTPTYQTVKHILKTNQNDHFSF 103
8***************************************8.88899*************************************************** PP
TIGR00482 99 iiGaDalkslekWkdieellekvelviveRpgkelkkallekaikllkekrnlvllkepaveiSStkiRkairegksvey 178
i+G+D+l +e+W+++eel +++++ +++R+++ k + l+ k+nl l++ ++ +SSt iR+ + +k+++
MMSYN1_0380 104 IMGSDQLDRFEEWNNFEELIKMIDFKVFKRNEDYNK-QVLN--------KYNLELFEFENNYLSSTDIRNLKHLDKQIKE 174
******************************855444.4443........356666666667*********9999988764 PP
>> TIGR00488 TIGR00488: putative HD superfamily hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 118.3 0.1 1.2e-37 7.6e-35 1 161 [. 190 347 .. 190 361 .. 0.92
Alignments for each domain:
== domain 1 score: 118.3 bits; conditional E-value: 1.2e-37
TIGR00488 1 lkeqldekRlqhilgveqlavqlaeanklDskkaevaglyhDlakflPkeklkkiakeeklpdvlldaspkllhadvgayilkeefGvddedvlkair 98
l++q+d+kR++h+l v+++a +la++ ++D+kka +ag +hD+ k ke+ ++ k+ p+ ++++ p ++h++ + + l + +dd+++l+a+
MMSYN1_0380 190 LETQMDQKRYIHCLNVGKMAHDLAIKWNVDPKKALIAGTLHDITKRWSKEQSLNYLKTYL-PQLINEPYP-VWHSYTAYLHLLYDWLIDDKEILSAVF 285
5789**************************************************999877.999999876.9****87766777778*********** PP
TIGR00488 99 nhtvgakkmslLdmiiyvaDklePnRakgieidklrklakkdLkqallltlkyvlsllkkknk 161
nhtvg+++mslLd+i++ aDk+ +R +++++dklr+l +dL + ++ lk+ l +kk+
MMSYN1_0380 286 NHTVGSENMSLLDIIVFCADKISIER-DYLGVDKLRELCFSDLMLGFKTLLKNQYDLAIKKHG 347
**************************.*****************************9999874 PP
>> TIGR00125 cyt_tran_rel: cytidyltransferase-like domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.3 0.0 4.8e-09 3.1e-06 1 60 [. 5 64 .. 5 67 .. 0.85
Alignments for each domain:
== domain 1 score: 25.3 bits; conditional E-value: 4.8e-09
TIGR00125 1 ivvfvGtFdplHlGHlklleeakelfde.livgvgsdefvnpekg.pvtsaeerlemlkalk 60
i++f+G+Fdp+H+ H+++++++ e+ +++++ + np+k + s +rl ml+ +k
MMSYN1_0380 5 IALFGGSFDPIHTDHVNIIKTCYEKLKFdEVWLIPA--YLNPFKTkQNSSIVDRLNMLEIIK 64
799*******************99887778888876..999999988788888888888776 PP
>> TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.4 0.0 9e-09 5.7e-06 1 65 [. 5 73 .. 5 83 .. 0.79
2 ? 0.0 0.2 0.28 1.8e+02 43 94 .. 128 179 .. 120 196 .. 0.56
Alignments for each domain:
== domain 1 score: 24.4 bits; conditional E-value: 9e-09
TIGR01510 1 iavypGsFdPvtlGHldiikralk..lfdevi.vavainpsKksl.fsleervelleeatkelanvevk 65
ia++ GsFdP+++ H++iik + fdev + np K++ s +r+++le + ++++ +++
MMSYN1_0380 5 IALFGGSFDPIHTDHVNIIKTCYEklKFDEVWlIPAYLNPFKTKQnSSIVDRLNMLEIIKNKFSYIKIY 73
69******************98652269***72456789888665156778999999888999988886 PP
== domain 2 score: 0.0 bits; conditional E-value: 0.28
TIGR01510 43 fsleervelleeatkelanvevkvfenlvvdlakelgakvivrGlRaatDfe 94
f++ +r e ++ + + n+e fen + ++k++ + +++++D+
MMSYN1_0380 128 FKVFKRNEDYNKQVLNKYNLELFEFENNYLSSTDIRNLKHLDKQIKEINDYV 179
5555555555555544456666666665555555556666666666666653 PP
>> TIGR00277 HDIG: HDIG domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.6 0.0 5.3e-08 3.4e-05 2 46 .. 195 239 .. 194 253 .. 0.91
Alignments for each domain:
== domain 1 score: 21.6 bits; conditional E-value: 5.3e-08
TIGR00277 2 eqgvleHslevaklaealaeelgadvelarrgaLlHDIGKaktre 46
+q+ + H+l v k+a la + ++d + a ++ lHDI K +e
MMSYN1_0380 195 DQKRYIHCLNVGKMAHDLAIKWNVDPKKALIAGTLHDITKRWSKE 239
678899**************999****************976655 PP
>> TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.0 0.1 1.2e-07 7.6e-05 2 82 .. 4 85 .. 3 119 .. 0.75
Alignments for each domain:
== domain 1 score: 20.0 bits; conditional E-value: 1.2e-07
TIGR01526 2 tiGvvfGkFaPlhtGhiyliekaask..vDellivvgslfedsaakeqltvedRlrwlrelFkyeknikiaalneedleeyPn 82
+i ++ G F P+ht h+++i+++ k De+ ++ + + + k++ ++ dRl l + + iki ++ ++ P
MMSYN1_0380 4 KIALFGGSFDPIHTDHVNIIKTCYEKlkFDEVWLIPAY-LNPFKTKQNSSIVDRLNMLEIIKNKFSYIKIYDYEIKNNKSTPT 85
6777789****************985227***998765.88899999999*****9776555555558887766666666664 PP
>> TIGR03319 RNase_Y: ribonuclease Y
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.9 0.0 1.3 8.1e+02 435 453 .. 53 71 .. 51 74 .. 0.86
2 ! 11.7 0.0 2.4e-05 0.015 324 371 .. 192 239 .. 118 247 .. 0.91
3 ! 3.5 0.0 0.0076 4.9 390 424 .. 277 311 .. 269 317 .. 0.93
Alignments for each domain:
== domain 1 score: -3.9 bits; conditional E-value: 1.3
TIGR03319 435 yikRlekLEeiaesfegve 453
+ Rl+ LE i ++f++++
MMSYN1_0380 53 IVDRLNMLEIIKNKFSYIK 71
589***********99875 PP
== domain 2 score: 11.7 bits; conditional E-value: 2.4e-05
TIGR03319 324 tsygqnvlkHsievaklagllaaelgldvklAkRaglLHDiGkavdhe 371
t q + H ++v k+a la + +d k+A ag LHDi k +e
MMSYN1_0380 192 TQMDQKRYIHCLNVGKMAHDLAIKWNVDPKKALIAGTLHDITKRWSKE 239
566788899*********************************987776 PP
== domain 3 score: 3.5 bits; conditional E-value: 0.0076
TIGR03319 390 skevvnaiaaHHedvepksvlavlvaaadalsaaR 424
+ke++ a+ H e+ s+l ++v ad +s R
MMSYN1_0380 277 DKEILSAVFNHTVGSENMSLLDIIVFCADKISIER 311
789*****************************887 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (365 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 236 (0.0525847); expected 89.8 (0.02)
Passed bias filter: 93 (0.0207219); expected 89.8 (0.02)
Passed Vit filter: 18 (0.0040107); expected 4.5 (0.001)
Passed Fwd filter: 7 (0.00155971); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 2495.98
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0380 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0381 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0381.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0381/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0381 [L=219]
Description: MTA/SAH-Nsdase: MTA/SAH nucleosidase 5=Equivalog Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.5e-30 102.3 0.8 1.8e-29 100.9 0.8 1.6 1 TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase
4.3e-11 40.7 0.7 7.8e-11 39.9 0.7 1.4 1 TIGR00107 deoD: purine nucleoside phosphorylase
1.2e-05 22.6 0.1 1.6e-05 22.2 0.1 1.2 1 TIGR01721 AMN-like: putative AMP nucleosidase
0.00063 17.4 0.0 0.0027 15.4 0.0 1.8 2 TIGR03664 fut_nucase: futalosine hydrolase
0.0033 13.8 0.2 0.13 8.6 0.0 2.0 2 TIGR02369 trimeth_pyl: trimethylamine:corrinoid methyltransf
------ inclusion threshold ------
0.029 12.1 0.0 0.037 11.8 0.0 1.2 1 TIGR01705 MTA/SAH-nuc-hyp: putative 5'-methylthioadenosine/S
Domain annotation for each model (and alignments):
>> TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.9 0.8 2.4e-32 1.8e-29 4 225 .. 4 214 .. 2 218 .. 0.83
Alignments for each domain:
== domain 1 score: 100.9 bits; conditional E-value: 2.4e-32
TIGR01704 4 vigameeevtllrdklenaktislagceittgelegtevillksgigkvaaalsatlllerykpdvvintgsagglahtlkvgdvvvsdevryhdvdv 101
+i am ee++ +k na+ + + +i ++ +++l s ig v+a+ + + +l++y+ d ++n g+ l++ k d+v+ +++ y vdv
MMSYN1_0381 4 IISAMYEELAYTLKKT-NAQL--IIDNDIL-KLYQYQNILLAISKIGLVNASCCLSYILNHYQIDQILNIGTCCSLNQEYKQNDIVIVNKAYYFSVDV 97
6778888877655553.4443..2333332.2345567888899****************************************************** PP
TIGR01704 102 tafdyeygqlpglpaaykadekliaiaeeavaeldliqvvkglivsgdafindskrlekvrarfsdli.avemeaaavaqvchqfkvpfvvvralsdv 198
t f y ygq+p lp + a++ l ld i+sgd fin+s +l + ++++d i v+mea+++ +v + +k p+ ++ +sdv
MMSYN1_0381 98 TGFSYSYGQIPKLPKYFLANNFLNLS-------LDY---KICNIASGDVFINKSEHLTQFINKINDKIdIVDMEACSLFHVAYLYKRPISSIKVISDV 185
******************99877432.......333...44679***************999999987369**************************9 PP
TIGR01704 199 a..dkeshlsfdeflevaakqsselvekl 225
l fd+f+++a+k+ +++++l
MMSYN1_0381 186 MfvSDSNMLQFDQFINKASKKIYQILNDL 214
632566789**********9987777665 PP
>> TIGR00107 deoD: purine nucleoside phosphorylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.9 0.7 1e-13 7.8e-11 58 206 .. 42 189 .. 30 203 .. 0.80
Alignments for each domain:
== domain 1 score: 39.9 bits; conditional E-value: 1e-13
TIGR00107 58 GhGmGipsisiyskelikeyevkkiirvGsCGairkkvklkdviialkastdskvnrvrfvevdlaaiadfelvklakeaakkkgldvkvGnvfsadl 155
+G+ s ++++y++++i+ +G+C +++++ k +d++i ka+ s v++ + + i++ la + ++ ld k+ n+ s d+
MMSYN1_0381 42 ISKIGLVNASCCLSYILNHYQIDQILNIGTCCSLNQEYKQNDIVIVNKAYYFSV--DVTGFSYSYGQIPKLPKYFLANN-FLNLSLDYKICNIASGDV 136
44455555556667799********************************98885..45666666666666655555554.457899************ PP
TIGR00107 156 fystdkevldllekyg..vlavemeaaalyavaaelgkkaltlltvsdhlvth 206
f ++ ++ + ++k + + v+mea +l+ va ++++ ++ +sd +
MMSYN1_0381 137 FINKSEHLTQFINKINdkIDIVDMEACSLFHVAYLYKRPISSIKVISDVMFVS 189
*****99999999876225579**************************88655 PP
>> TIGR01721 AMN-like: putative AMP nucleosidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.2 0.1 2.1e-08 1.6e-05 68 215 .. 44 190 .. 33 208 .. 0.76
Alignments for each domain:
== domain 1 score: 22.2 bits; conditional E-value: 2.1e-08
TIGR01721 68 klGsagaalivdllsflidakaavllGkcGGlrseyqvGdylvpvas..irgeGtsdaylpeevpalanfvvqkaitev.leekkkdyhiGivyttni 162
k+G +a+ + + + ++ +G c l+ ey+ d ++ + + t +y ++p l+++ + + ++ l+ k + G v+
MMSYN1_0381 44 KIGLVNASCCLSYILNHYQIDQILNIGTCCSLNQEYKQNDIVIVNKAyyFSVDVTGFSYSYGQIPKLPKYFLANNFLNLsLDYKICNIASGDVFI--- 138
66777777777666556666778999**************9876554224678888889999******998766554432555666666666654... PP
TIGR01721 163 rvwefnkkfrkklyetkaqsvemecatllaaGyrrklplGalllisdlplrke 215
e+ +f +k+ k + v+me+ +l+ + y k p+ ++ +isd + +
MMSYN1_0381 139 NKSEHLTQFINKIN-DKIDIVDMEACSLFHVAYLYKRPISSIKVISDVMFVSD 190
34577888988875.5899****************************876554 PP
>> TIGR03664 fut_nucase: futalosine hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.4 0.0 3.6e-06 0.0027 2 89 .. 3 90 .. 2 97 .. 0.93
2 ? -0.3 0.0 0.23 1.7e+02 176 201 .. 159 184 .. 133 205 .. 0.88
Alignments for each domain:
== domain 1 score: 15.4 bits; conditional E-value: 3.6e-06
TIGR03664 2 LivtavtaEaeallaglkgstpvgegslvsvrrkevtvlvaGvGkvaAAaataaalarapvelvislGiaGgfpgkaevGdlvladee 89
Li++a +E + l++ +++ + l+ ++ +++ +++ +G v+A + l++++++ ++++G + +++++ + d+v++++
MMSYN1_0381 3 LIISAMYEELAYTLKKTNAQLIIDNDILKLYQYQNILLAISKIGLVNASCCLSYILNHYQIDQILNIGTCCSLNQEYKQNDIVIVNKA 90
89999999999999999999888888899999**************************************************999875 PP
== domain 2 score: -0.3 bits; conditional E-value: 0.23
TIGR03664 176 nMEGaavavaaraagvpvlelRgiSN 201
+ME+ + ++a ++ p+ + iS
MMSYN1_0381 159 DMEACSLFHVAYLYKRPISSIKVISD 184
79999999999999999999999996 PP
>> TIGR02369 trimeth_pyl: trimethylamine:corrinoid methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3.2 0.1 0.0077 5.8 368 389 .. 11 34 .. 2 52 .. 0.71
2 ! 8.6 0.0 0.00017 0.13 365 437 .. 65 140 .. 51 145 .. 0.86
Alignments for each domain:
== domain 1 score: 3.2 bits; conditional E-value: 0.0077
TIGR02369 368 elgmtf..smeqlvidndiikmvk 389
el t+ + ql+idndi+k+ +
MMSYN1_0381 11 ELAYTLkkTNAQLIIDNDILKLYQ 34
455554114579*********865 PP
== domain 2 score: 8.6 bits; conditional E-value: 0.00017
TIGR02369 365 gmlelgmtfsmeqlvidndiikmvkkalqgvevseetlavesiqkv...gignnflalkqtrllvnypsdpmlidr 437
+l++g s++q +ndi+ + k v+v+ + + i k+ + nnfl l ++ n s ++i++
MMSYN1_0381 65 QILNIGTCCSLNQEYKQNDIVIVNKAYYFSVDVTGFSYSYGQIPKLpkyFLANNFLNLSLDYKICNIASGDVFINK 140
5799*****************99999999****999998877765522179****************999998876 PP
>> TIGR01705 MTA/SAH-nuc-hyp: putative 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.8 0.0 5e-05 0.037 62 173 .. 64 185 .. 34 213 .. 0.70
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 5e-05
TIGR01705 62 dlvvslgsags..rtleqteiyqavsvsyrdidasalgfekgatpfl......dlpvevalplripeikearlstggavvsgeaydlid..admveme 149
d ++ +g++ s + +q +i y +d + + + g+ p l + + +l ++i +i+ + + + + i+ d+v+me
MMSYN1_0381 64 DQILNIGTCCSlnQEYKQNDIVIVNKAYYFSVDVTGFSYSYGQIPKLpkyflaNNFLNLSLDYKICNIASGDVFINKSEHLTQFINKINdkIDIVDME 161
44555565555225678999999889999999*******9999996621111122346678888888888776655544444444445323699**** PP
TIGR01705 150 tfavlracqlfdvplislrgisdg 173
+ +++ l++ p+ s++ isd
MMSYN1_0381 162 ACSLFHVAYLYKRPISSIKVISDV 185
*99999999999999999999985 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (219 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 205 (0.0456774); expected 89.8 (0.02)
Passed bias filter: 96 (0.0213904); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1497.59
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0381 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0382 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0382.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0382/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0382 [L=212]
Description: deoxynucleoside kinase 2=Generic Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-09 34.9 1.0 2.4e-07 28.6 1.0 2.5 1 TIGR00041 DTMP_kinase: dTMP kinase
0.00028 17.6 0.0 0.00036 17.2 0.0 1.1 1 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
0.00059 16.9 0.1 0.0012 15.9 0.1 1.5 2 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
0.0018 15.7 0.0 0.0029 15.0 0.0 1.4 1 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
0.002 15.8 1.0 0.0034 15.0 1.0 1.7 1 TIGR00235 udk: uridine kinase
0.0029 15.3 0.1 0.0051 14.6 0.1 1.4 1 TIGR00231 small_GTP: small GTP-binding protein domain
0.0031 14.1 0.0 0.0052 13.4 0.0 1.3 1 TIGR00955 3a01204: pigment precursor permease
0.0043 14.5 0.0 0.0063 13.9 0.0 1.3 1 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
0.0079 12.8 0.0 0.011 12.3 0.0 1.2 1 TIGR01192 chvA: glucan exporter ATP-binding protein
0.0084 13.6 0.1 0.01 13.3 0.1 1.3 1 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
0.0091 14.2 0.3 0.051 11.8 0.0 2.1 2 TIGR02528 EutP: ethanolamine utilization protein, EutP
------ inclusion threshold ------
0.013 13.2 0.0 0.021 12.6 0.0 1.3 1 TIGR00101 ureG: urease accessory protein UreG
0.014 12.3 0.0 0.018 11.9 0.0 1.1 1 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
0.017 12.3 0.0 0.026 11.7 0.0 1.3 1 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
0.019 11.2 1.3 0.038 10.2 0.0 1.8 2 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
0.02 12.7 0.4 2.1 6.1 0.0 2.8 2 TIGR00152 TIGR00152: dephospho-CoA kinase
0.021 12.1 0.0 0.032 11.5 0.0 1.3 1 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
0.041 11.0 0.1 0.051 10.7 0.1 1.1 1 TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood A
0.045 11.1 0.1 0.071 10.5 0.1 1.3 1 TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase
0.063 9.1 0.2 0.091 8.6 0.2 1.1 1 TIGR00618 sbcc: exonuclease SbcC
Domain annotation for each model (and alignments):
>> TIGR00041 DTMP_kinase: dTMP kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.6 1.0 1e-09 2.4e-07 7 161 .. 3 162 .. 1 193 [. 0.68
Alignments for each domain:
== domain 1 score: 28.6 bits; conditional E-value: 1e-09
TIGR00041 7 iviEGidGaGKTtqlellkkllkeeglkvlltrEPggtklgekirelllteneepleekaealLFaadRaehveekikpalaegklvisDRylfSslA 104
i+i G GaGKTt+le lkkll+ +++ +E ++ + +++ t+++ + + ++ l + dR +++ ik + +++ vi DR ++ s++
MMSYN1_0382 3 IAIFGTTGAGKTTLLENLKKLLDS---SYVFINE-TSLDCPYFNKAYDDTNKNVQDYNYKLDLWMLTDR---MKTFIKYKDHQN--VIYDRSILDSMV 91
8899********************...4666665.55666655556655666666666778888899**...888898776666..************ PP
TIGR00041 105 Yqglarkidi..dlvle.lnekalq.lkP............dlvilLdidpevalerlskrgeldreelekld 161
++++ + + d+ ++ ++++l + P d+vi+L++dp +a +r++kr+ el ++d
MMSYN1_0382 92 FSQTDHMYNRlsDTDYNvFKDYFLTcILPnifdiknnwktfDVVIYLKVDPYKAIQRINKRSR--DVELDTND 162
*996543322112222214455555566644444444444478******************99..33333333 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.2 0.0 1.6e-06 0.00036 363 388 .. 2 27 .. 1 38 [. 0.87
Alignments for each domain:
== domain 1 score: 17.2 bits; conditional E-value: 1.6e-06
TIGR02868 363 rvavvGasGaGKstLlallaglldpl 388
r+a+ G +GaGK+tLl+ l +lld++
MMSYN1_0382 2 RIAIFGTTGAGKTTLLENLKKLLDSS 27
89*********************954 PP
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.9 0.1 5.5e-06 0.0012 34 67 .. 3 34 .. 1 54 [. 0.79
2 ? -2.1 0.0 1.7 3.9e+02 195 223 .. 58 86 .. 46 107 .. 0.73
Alignments for each domain:
== domain 1 score: 15.9 bits; conditional E-value: 5.5e-06
TIGR04521 34 vaiiGhtGsGKstliqhlngLlkptsGeveidgl 67
+ai G+tG+GK+tl++ l+ Ll + v i+++
MMSYN1_0382 3 IAIFGTTGAGKTTLLENLKKLLDSS--YVFINET 34
79*******************9865..4555555 PP
== domain 2 score: -2.1 bits; conditional E-value: 1.7
TIGR04521 195 gktvilvtHsmedvaeladrvivlkkGkv 223
++ +++ t +m+ +++ d+ v+ + ++
MMSYN1_0382 58 KLDLWMLTDRMKTFIKYKDHQNVIYDRSI 86
46677888888888888888777766555 PP
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.0 1.3e-05 0.0029 31 56 .. 3 28 .. 2 87 .. 0.80
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 1.3e-05
TIGR02315 31 vaviGlsGaGkstllrsinrlveiss 56
+a+ G+ GaGk+tll + +l ++s
MMSYN1_0382 3 IAIFGTTGAGKTTLLENLKKLLDSSY 28
799******************98654 PP
>> TIGR00235 udk: uridine kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 1.0 1.5e-05 0.0034 9 90 .. 3 83 .. 1 157 [. 0.83
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 1.5e-05
TIGR00235 9 igiaGasgsGkttvaekivellkkekivlisqDnyYkdlsdkelaerkkinfDhPdaldldlllehlknLkkgkavdvPvYd 90
i+i G+ g+Gktt+ e++ +ll++ + v i++ + ++ +k+ + +k D ldl +l++ +k + k+k + +Yd
MMSYN1_0382 3 IAIFGTTGAGKTTLLENLKKLLDS-SYVFINETSLDCPYFNKAYDDTNKNVQDYNYKLDLWMLTDRMKTFIKYKDHQNVIYD 83
89*****************99995.556666665555555555555555555555568888888888888887777777776 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.1 2.3e-05 0.0051 4 25 .. 1 22 [. 1 37 [. 0.89
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 2.3e-05
TIGR00231 4 ikivivGhvdvGKstLlnsllk 25
++i+i G ++GK+tLl++l+k
MMSYN1_0382 1 MRIAIFGTTGAGKTTLLENLKK 22
689****************987 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.4 0.0 2.3e-05 0.0052 54 74 .. 3 23 .. 2 45 .. 0.85
Alignments for each domain:
== domain 1 score: 13.4 bits; conditional E-value: 2.3e-05
TIGR00955 54 lAvlGsSGaGKtTLlnalafr 74
+A++G+ GaGKtTLl+ l +
MMSYN1_0382 3 IAIFGTTGAGKTTLLENLKKL 23
7**************999765 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.9 0.0 2.8e-05 0.0063 27 59 .. 3 33 .. 1 58 [. 0.79
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 2.8e-05
TIGR03608 27 vaivGesGsGKstlLnilgllekkdsgkvileg 59
+ai+G+ G+GK+tlL l +l ds v++++
MMSYN1_0382 3 IAIFGTTGAGKTTLLENLKKLL--DSSYVFINE 33
8**************9887764..344555555 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.3 0.0 4.8e-05 0.011 364 392 .. 3 31 .. 1 45 [. 0.82
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 4.8e-05
TIGR01192 364 vaivgptgagkttlinllqrvydpksgqi 392
+ai g tgagkttl++ l+++ d + +i
MMSYN1_0382 3 IAIFGTTGAGKTTLLENLKKLLDSSYVFI 31
8******************9998766555 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.3 0.1 4.5e-05 0.01 20 44 .. 2 26 .. 1 93 [. 0.83
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 4.5e-05
TIGR01166 20 vlallGanGaGkstlllhlnGllrP 44
++a++G+ GaGk+tll++l+ ll
MMSYN1_0382 2 RIAIFGTTGAGKTTLLENLKKLLDS 26
589****************999864 PP
>> TIGR02528 EutP: ethanolamine utilization protein, EutP
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.8 0.0 0.00023 0.051 2 22 .. 2 22 .. 1 34 [. 0.92
2 ? -0.1 0.1 1 2.3e+02 23 42 .. 70 89 .. 63 108 .. 0.80
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 0.00023
TIGR02528 2 rimliGsvgcGkttLtqaLkg 22
ri++ G +g+GkttL ++Lk
MMSYN1_0382 2 RIAIFGTTGAGKTTLLENLKK 22
899*************99975 PP
== domain 2 score: -0.1 bits; conditional E-value: 1
TIGR02528 23 eeikykktqaveykdkaiDt 42
+ ikyk q v y +++D
MMSYN1_0382 70 TFIKYKDHQNVIYDRSILDS 89
5699********99999885 PP
>> TIGR00101 ureG: urease accessory protein UreG
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.6 0.0 9.6e-05 0.021 2 30 .. 1 29 [. 1 38 [. 0.90
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 9.6e-05
TIGR00101 2 lkigvagpvgsgktaliealtrelakkyd 30
++i + g g+gkt+l+e+l + l + y
MMSYN1_0382 1 MRIAIFGTTGAGKTTLLENLKKLLDSSYV 29
589*********************99995 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.9 0.0 8.2e-05 0.018 350 384 .. 2 34 .. 1 46 [. 0.84
Alignments for each domain:
== domain 1 score: 11.9 bits; conditional E-value: 8.2e-05
TIGR02857 350 lvalvGaSGaGKstllklllgfvepteGailvnga 384
++a+ G+ GaGK+tll+ l +++ + + +n++
MMSYN1_0382 2 RIAIFGTTGAGKTTLLENLKKLLD--SSYVFINET 34
689****************99996..566666665 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.7 0.0 0.00012 0.026 26 46 .. 3 23 .. 1 51 [. 0.86
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 0.00012
TIGR02142 26 talFGrsGsGktslirliaGL 46
+a+FG+ G+Gkt+l++ + L
MMSYN1_0382 3 IAIFGTTGAGKTTLLENLKKL 23
79************9987666 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.2 0.0 0.00017 0.038 495 518 .. 2 25 .. 1 37 [. 0.87
2 ? -0.4 0.4 0.28 62 98 186 .. 55 147 .. 42 150 .. 0.73
Alignments for each domain:
== domain 1 score: 10.2 bits; conditional E-value: 0.00017
TIGR03375 495 kvaiiGriGsGKstllklllglye 518
++ai G++G+GK+tll l +l++
MMSYN1_0382 2 RIAIFGTTGAGKTTLLENLKKLLD 25
8**************988777765 PP
== domain 2 score: -0.4 bits; conditional E-value: 0.28
TIGR03375 98 keqelsleeleeeysglailvkpeakl.dkra.eelekakkkhWfwstlkeskrlyrdvliasllinllalavp..LFvmnVYdrVvPnqaie 186
+ +l+l l++++++++ + +++ + d+ + +++ ++++h + + + +++++d ++ +l n++ + + F +Y +V P +ai+
MMSYN1_0382 55 YNYKLDLWMLTDRMKTFIKYKDHQNVIyDRSIlDSMVFSQTDHMYNRLSDTDYNVFKDYFLTCILPNIFDIKNNwkTFDVVIYLKVDPYKAIQ 147
55667777888888888888877776656665244555566665666666788999*************998752268888899999998886 PP
>> TIGR00152 TIGR00152: dephospho-CoA kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.1 0.0 0.0092 2.1 2 22 .. 3 23 .. 2 32 .. 0.86
2 ? 3.7 0.1 0.049 11 119 145 .. 127 153 .. 71 165 .. 0.77
Alignments for each domain:
== domain 1 score: 6.1 bits; conditional E-value: 0.0092
TIGR00152 2 igltGgigsGKstvakilkdk 22
i++ G g GK+t+++ lk+
MMSYN1_0382 3 IAIFGTTGAGKTTLLENLKKL 23
89*************999865 PP
== domain 2 score: 3.7 bits; conditional E-value: 0.049
TIGR00152 119 kleklvdkvivvevskelqlerlmkrd 145
+ k +d vi ++v++ ++r+ kr
MMSYN1_0382 127 NNWKTFDVVIYLKVDPYKAIQRINKRS 153
445788999999999999999999886 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.0 0.00014 0.032 31 95 .. 4 72 .. 2 104 .. 0.67
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 0.00014
TIGR00972 31 aliGpsGcGkstllrslnrlndl....veevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp 95
a+ G +G+Gk+tll l +l d ++e+ ++ + + d ++k+++ ++++ + m+ +++ f
MMSYN1_0382 4 AIFGTTGAGKTTLLENLKKLLDSsyvfINETSLDCPYFNKAYDDTNKNVQDYNYKLDLWMLTDRMKTFI 72
899*****************9971111233333443444445555555666666666666666666664 PP
>> TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.7 0.1 0.00023 0.051 181 202 .. 3 24 .. 1 35 [. 0.81
Alignments for each domain:
== domain 1 score: 10.7 bits; conditional E-value: 0.00023
TIGR03819 181 llvsGgtGsGkttLLsalLalv 202
+ + G+tG+GkttLL l l+
MMSYN1_0382 3 IAIFGTTGAGKTTLLENLKKLL 24
5689***********9986555 PP
>> TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.5 0.1 0.00031 0.071 130 150 .. 3 23 .. 1 27 [. 0.88
Alignments for each domain:
== domain 1 score: 10.5 bits; conditional E-value: 0.00031
TIGR03167 130 vvlgGnTGsgKtelLeklaea 150
+++ G+TG+gKt+lLe+l++
MMSYN1_0382 3 IAIFGTTGAGKTTLLENLKKL 23
5789*************9986 PP
>> TIGR00618 sbcc: exonuclease SbcC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.6 0.2 0.00041 0.091 31 45 .. 4 18 .. 2 20 .. 0.91
Alignments for each domain:
== domain 1 score: 8.6 bits; conditional E-value: 0.00041
TIGR00618 31 vicGktGaGKtsLld 45
+i G tGaGKt+Ll+
MMSYN1_0382 4 AIFGTTGAGKTTLLE 18
799***********8 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (212 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 376 (0.083779); expected 89.8 (0.02)
Passed bias filter: 260 (0.0579323); expected 89.8 (0.02)
Passed Vit filter: 106 (0.0236185); expected 4.5 (0.001)
Passed Fwd filter: 20 (0.00445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 20 [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.22
# Mc/sec: 1383.82
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0382 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0387 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0387.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0387/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0387 [L=375]
Description: trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 5=Equivalog tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.9e-134 444.3 11.2 6.7e-134 444.1 11.2 1.0 1 TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-m
3.7e-07 27.5 0.1 1.6e-06 25.4 0.0 2.0 2 TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI
4.5e-06 24.0 1.1 0.00013 19.2 0.2 2.7 2 TIGR00552 nadE: NAD+ synthetase
0.0001 19.9 2.7 0.0024 15.4 0.1 3.2 4 TIGR00364 TIGR00364: queuosine biosynthesis protein QueC
0.00012 20.0 0.4 0.075 10.9 0.0 2.4 2 TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
0.0013 16.1 0.9 0.0099 13.2 0.9 2.1 1 TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing),
0.0063 13.8 0.0 0.0098 13.2 0.0 1.3 1 TIGR00032 argG: argininosuccinate synthase
------ inclusion threshold ------
0.019 12.2 0.1 0.045 11.0 0.0 1.7 2 TIGR03679 arCOG00187: arCOG00187 universal archaeal metal-bi
Domain annotation for each model (and alignments):
>> TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 444.1 11.2 1.2e-136 6.7e-134 1 351 [] 3 370 .. 3 370 .. 0.96
Alignments for each domain:
== domain 1 score: 444.1 bits; conditional E-value: 1.2e-136
TIGR00420 1 kkvivglsgGvDssvsalllkkqgyevkgvylklweedekeddl........eCssaedlkdaqaiaeklgiklekvnfeeeywnkvfeelieeykeG 90
+kv+vglsgGvDssv+ +ll +qgyev+g+++++w++ +++d+l C +++d+ da+a+a+kl+ikl+ v+f +eyw+ vf ++ieeyk+
MMSYN1_0387 3 QKVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILgnininndICPQEQDYLDAKAVADKLNIKLHRVDFIKEYWDYVFLYFIEEYKKA 100
69****************************************999*****999********************************************* PP
TIGR00420 91 stPnPdilCnkliKFgalleyakeklgadkiatGHYarvkekeeksl..llraldknKDqsYfLselskevlakllfPlgellKkevrqlAkeanlst 186
+tPnPdilCnk iKF ++l+ya ++l+ad+ia GHYa+v++++ +++ l +a d+nKDq+YfLs+l++++l+k+lfPl++l+K++vr++A e nl t
MMSYN1_0387 101 RTPNPDILCNKYIKFDKFLNYAINQLNADYIAMGHYAKVEFNKTTKQyeLFKASDTNKDQTYFLSQLNQNQLSKTLFPLANLTKEQVRKIALEQNLIT 198
****************************************665444347************************************************* PP
TIGR00420 187 aekkdsqgiCfigerkfkdflkkylpvkkGeiidvdtekvigeHdGlwfytiGqrkGlslggakepwfvvekdleknellvsk..dkeelaskellve 282
a+kkds+giCfiger+f+dfl++y+p++ G+i+d++t+kv+g+H G+++ytiGqrkG++l+g++ep++v +kd+ek +l+v + d+ l+s+++ v+
MMSYN1_0387 199 ANKKDSTGICFIGERHFTDFLQNYIPSQTGNIVDIKTNKVLGQHIGIMYYTIGQRKGIHLSGMSEPYYVADKDVEKKILYVCStsDQSYLYSTSCFVN 296
*********************************************************************************99999************ PP
TIGR00420 283 elswlkk....pkale.lrltvkiRyrqkpvscklkllkdnlievsldepqaavtpGqsavlYkddivLGggii 351
+++w+ + +++++ +++ k+Ryrq++ ++ +k+++dn+ +v++++p +a+t Gq av+Y ddi+LGg++i
MMSYN1_0387 297 DINWILDlskyVSDVNqFKCQAKFRYRQNDNNVVVKKIDDNNYQVIFEKPLKAITIGQQAVFYLDDICLGGAVI 370
****998766655555359*****************************************************98 PP
>> TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.4 0.0 2.8e-09 1.6e-06 173 212 .. 3 42 .. 1 61 [. 0.88
2 ? -1.6 0.1 0.47 2.7e+02 92 114 .. 304 326 .. 273 356 .. 0.60
Alignments for each domain:
== domain 1 score: 25.4 bits; conditional E-value: 2.8e-09
TIGR00342 173 gkvlaLlSgGiDSpVaaflvmkRGcrvvavhfknepaase 212
kv++ lSgG+DS Va +l+++ G++v+ +++ n + a++
MMSYN1_0387 3 QKVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATN 42
6999****************************99766544 PP
== domain 2 score: -1.6 bits; conditional E-value: 0.47
TIGR00342 92 lkelrkekktFkvevkRrdkdFa 114
l++++++ + Fk + k r+++
MMSYN1_0387 304 LSKYVSDVNQFKCQAKFRYRQND 326
45555555555555555554433 PP
>> TIGR00552 nadE: NAD+ synthetase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.2 0.2 2.4e-07 0.00013 23 67 .. 3 45 .. 1 88 [. 0.64
2 ? 2.4 0.0 0.033 18 156 172 .. 176 192 .. 171 198 .. 0.84
Alignments for each domain:
== domain 1 score: 19.2 bits; conditional E-value: 2.4e-07
TIGR00552 23 kgvvlGlSGGiDSavvaalavealgkeevlalilpesnqaseqdv 67
++vv+GlSGG+DS+v +l + + ev +l + + +a ++d+
MMSYN1_0387 3 QKVVVGLSGGVDSSVACYLLLQQGY--EVEGLFMRNWDSATNNDI 45
79***********777777766665..355555554444444444 PP
== domain 2 score: 2.4 bits; conditional E-value: 0.033
TIGR00552 156 laplaellKtqvkeLak 172
l pla+l+K+qv+++a
MMSYN1_0387 176 LFPLANLTKEQVRKIAL 192
78***********9875 PP
>> TIGR00364 TIGR00364: queuosine biosynthesis protein QueC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.4 0.1 4.3e-06 0.0024 2 27 .. 6 31 .. 5 36 .. 0.92
2 ? -2.5 0.0 1.3 7.2e+02 43 58 .. 65 80 .. 59 85 .. 0.86
3 ? 2.9 0.0 0.029 16 150 188 .. 173 212 .. 129 218 .. 0.81
4 ? -1.4 0.0 0.6 3.4e+02 106 146 .. 266 306 .. 256 320 .. 0.83
Alignments for each domain:
== domain 1 score: 15.4 bits; conditional E-value: 4.3e-06
TIGR00364 2 vvvlSGGlDSttvllialkegeevea 27
vv lSGG+DS+++ +++l++g+eve
MMSYN1_0387 6 VVGLSGGVDSSVACYLLLQQGYEVEG 31
899*********************86 PP
== domain 2 score: -2.5 bits; conditional E-value: 1.3
TIGR00364 43 Akkiaealgiketvid 58
Ak +a++l+ik + +d
MMSYN1_0387 65 AKAVADKLNIKLHRVD 80
8999******999988 PP
== domain 3 score: 2.9 bits; conditional E-value: 0.029
TIGR00364 150 vkieaPlieltKaeivklakelgkldlvik.etyscyege 188
k Pl +ltK+++ k+a e + ++ k t c+ ge
MMSYN1_0387 173 SKTLFPLANLTKEQVRKIALEQNLITANKKdSTGICFIGE 212
45678****************9977665541455676665 PP
== domain 4 score: -1.4 bits; conditional E-value: 0.6
TIGR00364 106 yAealgaeavilgvneedfsgyPDcreefvkalnkalelgt 146
y +++e+ il v+ + + y ++ fv+ +n +l+l+
MMSYN1_0387 266 YVADKDVEKKILYVCSTSDQSYLYSTSCFVNDINWILDLSK 306
55677888888889999889999999999999999999984 PP
>> TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.9 0.0 0.00013 0.075 1 25 [. 4 28 .. 4 79 .. 0.83
2 ! 6.9 0.2 0.0022 1.2 89 165 .. 117 196 .. 113 205 .. 0.69
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 0.00013
TIGR02432 1 kllvAvSGGvDSmaLlkllkelkek 25
k++v++SGGvDS + +ll++ ++
MMSYN1_0387 4 KVVVGLSGGVDSSVACYLLLQQGYE 28
689*************999875444 PP
== domain 2 score: 6.9 bits; conditional E-value: 0.0022
TIGR02432 89 kaleelakklkaeviltAHhadDqiEtillr..llrgsglkglsg..lkeirelekkiqivRPLlkiskkeieeylkeekl 165
k+l+ ++++l+a++i+++H a + + l++ s ++ ++ l++ +++ + + + PL +++k+++++++ e++l
MMSYN1_0387 117 KFLNYAINQLNADYIAMGHYAKVEFNKTTKQyeLFKASDTNKDQTyfLSQLNQN-QLSKTLFPLANLTKEQVRKIALEQNL 196
578889999**********88755544433311445553333333334555555.4667889*************999887 PP
>> TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.2 0.9 1.8e-05 0.0099 17 38 .. 3 24 .. 1 200 [. 0.67
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 1.8e-05
TIGR00884 17 akviialsGGvdssvaavllhk 38
+kv+++lsGGvdssva+ ll +
MMSYN1_0387 3 QKVVVGLSGGVDSSVACYLLLQ 24
79**************988643 PP
>> TIGR00032 argG: argininosuccinate synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.2 0.0 1.8e-05 0.0098 1 27 [. 4 30 .. 4 45 .. 0.92
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 1.8e-05
TIGR00032 1 kvvlaysGGlDtsvalklleekgaevi 27
kvv+ sGG+D sva ll ++g+ev
MMSYN1_0387 4 KVVVGLSGGVDSSVACYLLLQQGYEVE 30
89**********************995 PP
>> TIGR03679 arCOG00187: arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transp
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.0 0.0 8.1e-05 0.045 4 27 .. 9 32 .. 6 39 .. 0.90
2 ? -3.7 0.0 2.4 1.3e+03 26 42 .. 275 291 .. 270 294 .. 0.80
Alignments for each domain:
== domain 1 score: 11.0 bits; conditional E-value: 8.1e-05
TIGR03679 4 lsGGKDSlyalykaleeGlevkkl 27
lsGG DS++a+y l++G+ev+ l
MMSYN1_0387 9 LSGGVDSSVACYLLLQQGYEVEGL 32
7********************876 PP
== domain 2 score: -3.7 bits; conditional E-value: 2.4
TIGR03679 26 klitvkpeneeSymfhv 42
k++ v ++ ++Sy++ +
MMSYN1_0387 275 KILYVCSTSDQSYLYST 291
57789999999**9976 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (375 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 216 (0.0481283); expected 89.8 (0.02)
Passed bias filter: 91 (0.0202763); expected 89.8 (0.02)
Passed Vit filter: 16 (0.00356506); expected 4.5 (0.001)
Passed Fwd filter: 8 (0.00178253); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.21
# Mc/sec: 2564.36
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0387 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0388 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0388.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0388/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0388 [L=205]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.33 7.8 10.9 1.2 5.9 0.2 2.1 2 TIGR04265 bac_cardiolipin: cardiolipin synthase
0.37 9.1 0.0 0.37 9.1 0.0 2.7 3 TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protei
4 5.4 14.4 0.19 9.7 0.6 2.2 2 TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/
Domain annotation for each model (and alignments):
>> TIGR04265 bac_cardiolipin: cardiolipin synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.9 0.2 0.00083 1.2 32 78 .. 3 49 .. 1 108 [. 0.67
2 ? 5.6 5.4 0.001 1.6 52 103 .. 133 181 .. 130 198 .. 0.75
Alignments for each domain:
== domain 1 score: 5.9 bits; conditional E-value: 0.00083
TIGR04265 32 tlaWLlvlvvlPlvGfilyLll.Grlhlkkrrlekkdkedkralekiv 78
t + L++++++ +vGf+++ + G+ + +k+ ek+ +++++++++ +
MMSYN1_0388 3 TSTILMIVLLVFVVGFVIWSTItGK-KANKKEKEKRYNQVREKIKEYI 49
557789999999****999766155.5555544554444444443322 PP
== domain 2 score: 5.6 bits; conditional E-value: 0.001
TIGR04265 52 llGrlhlkkrrlekkdkedkralekivkkqledlkeekykkaeeqvqklael 103
++G++++k k +k++ +++eki++k+l++ ++e++kka+e+++ +
MMSYN1_0388 133 AIGEKTIKLT---KAEKQKLKEVEKIQAKKLAQQEKEQLKKAKEKQKSQKGS 181
5677555555...5555999********************999988776654 PP
>> TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.1 0.0 0.00025 0.37 4 38 .. 6 40 .. 5 65 .. 0.77
2 ? -2.4 3.5 0.93 1.4e+03 42 67 .. 146 170 .. 125 179 .. 0.66
3 ? -1.2 0.5 0.37 5.6e+02 26 44 .. 170 188 .. 160 192 .. 0.67
Alignments for each domain:
== domain 1 score: 9.1 bits; conditional E-value: 0.00025
TIGR03142 4 ilaalltlvalllvllPllrakrakatadrdelnl 38
il+++l+++++ +v++ ++++k+a+++++++++n+
MMSYN1_0388 6 ILMIVLLVFVVGFVIWSTITGKKANKKEKEKRYNQ 40
78999999999999999999999876666665554 PP
== domain 2 score: -2.4 bits; conditional E-value: 0.93
TIGR03142 42 rdrLaELerdeaeglldeaeaeaaka 67
+++L+E+e+ +a+ l+++e e++k+
MMSYN1_0388 146 KQKLKEVEKIQAK-KLAQQEKEQLKK 170
4566666665553.344444555543 PP
== domain 3 score: -1.2 bits; conditional E-value: 0.37
TIGR03142 26 rakatadrdelnlavYrdr 44
+ak+++++++ l +Y++r
MMSYN1_0388 170 KAKEKQKSQKGSLDIYQER 188
3336667777788888876 PP
>> TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.7 0.6 0.00012 0.19 3 65 .. 6 71 .. 4 84 .. 0.75
2 ? 0.2 7.3 0.11 1.6e+02 20 67 .. 141 192 .. 132 195 .. 0.69
Alignments for each domain:
== domain 1 score: 9.7 bits; conditional E-value: 0.00012
TIGR03592 3 glaIilltlvirllllplsa.kqiksmrkmqelqpklkeiqekyk..edrqklqqemmklykeegv 65
+l I+ll++v+ ++++ k+ ++++k ++ ++ ++i+e e +++l e k+y ++g+
MMSYN1_0388 6 ILMIVLLVFVVGFVIWSTITgKKANKKEKEKRYNQVREKIKEYILknEHKKNLRIEFEKVYARKGA 71
789************986651555555666667777777777654555567799999999998885 PP
== domain 2 score: 0.2 bits; conditional E-value: 0.11
TIGR03592 20 lsakqiksmrkmqelqpklkeiqekyk....edrqklqqemmklykeegvnp 67
l+ ++ ++ ++++++q k + qek + +++qk q+ ++y+e+++n
MMSYN1_0388 141 LTKAEKQKLKEVEKIQAKKLAQQEKEQlkkaKEKQKSQKGSLDIYQERKLNI 192
4555555555555666555555555445566889999999********9996 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (205 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 1097 (0.24443); expected 89.8 (0.02)
Passed bias filter: 242 (0.0539216); expected 89.8 (0.02)
Passed Vit filter: 19 (0.00423351); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 1471.94
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0388 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0389 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0389.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0389/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0389 [L=714]
Description: PF11074 domain protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.044 11.6 1.4 0.062 11.1 0.4 1.8 2 TIGR00372 cas4: CRISPR-associated protein Cas4
Domain annotation for each model (and alignments):
>> TIGR00372 cas4: CRISPR-associated protein Cas4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.1 0.4 1.4e-05 0.062 45 120 .. 157 230 .. 122 265 .. 0.77
2 ? -3.0 0.0 0.3 1.3e+03 104 130 .. 337 363 .. 336 381 .. 0.76
Alignments for each domain:
== domain 1 score: 11.1 bits; conditional E-value: 1.4e-05
TIGR00372 45 flkslgeevkeekevilkskklglkGviDvvleedg.elvpvEvksgkakkreahklQllayallleerygvevskg 120
+lk+ + + +e ++++ +lk + Dv++ ++ + +E+k+ ++ +++h + l++++++le+++ +++
MMSYN1_0389 157 LLKNHQDQYVYLYEPAFEFDNFNLKVKCDVLKLNGDnHVEIIEAKATSK-VKKEHFWDLVYQVYVLERNG--FIVDN 230
666666666666788888998999*******999885666789999888.688***************99..34433 PP
== domain 2 score: -3.0 bits; conditional E-value: 0.3
TIGR00372 104 ayallleerygvevskgyllyleegkk 130
ay+l l+e+ +e+ k +yl+++kk
MMSYN1_0389 337 AYMLRLDENQIIEIFKNDSCYLHYDKK 363
899999999999998666666666665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (714 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 208 (0.0463458); expected 89.8 (0.02)
Passed bias filter: 76 (0.016934); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.21
# Mc/sec: 4882.55
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0389 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0390 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0390.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0390/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0390 [L=317]
Description: fmt: methionyl-tRNA formyltransferase 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-85 285.5 3.3 1.3e-85 285.2 3.3 1.0 1 TIGR00460 fmt: methionyl-tRNA formyltransferase
4.6e-13 47.1 0.0 6.7e-13 46.6 0.0 1.3 1 TIGR00639 PurN: phosphoribosylglycinamide formyltransferase
7.9e-08 30.2 0.2 1.4e-07 29.4 0.2 1.4 1 TIGR00655 PurU: formyltetrahydrofolate deformylase
Domain annotation for each model (and alignments):
>> TIGR00460 fmt: methionyl-tRNA formyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 285.2 3.3 8.8e-89 1.3e-85 2 301 .. 6 303 .. 5 313 .. 0.98
Alignments for each domain:
== domain 1 score: 285.2 bits; conditional E-value: 8.8e-89
TIGR00460 2 kilffgsptfslkaleelrenngfevvgvvtqpdkpagRekkllpppvkvlaekkgipvlqpekqelleeledveelkpdvivvvsfGkllpkelldl 99
ki+f+g+p++ + +l++l+e n++evv v+ qpdkp gR+k++++ pvk+la++ +++v+qp+k e +d+++l+ d +++ +fG+++p +l+l
MMSYN1_0390 6 KIVFCGTPKIGADVLKALIEMNQVEVVLVISQPDKPIGRKKQIVYTPVKKLALENNLKVVQPNKIG--EIYDDLAKLEFDFLITCAFGQFIPTKILKL 101
8***************************************************************99..****************************** PP
TIGR00460 100 fplgviNvHpSlLPryrGaAPiqraileGdtktgvtimqlkeelDaGdilkqeevaieeednskeLsdklselgaqlLietlkellegknkpeaqkae 197
+ iN H+SlLP++rG+APiq+ai +Gd+ktg+timq+++++DaGd +qe+++i d s+ L +k+++l+ ++ + l ++++ k + ++q++
MMSYN1_0390 102 AKIDSINFHGSLLPKLRGGAPIQYAIKNGDKKTGITIMQMVKQMDAGDYYVQESIDILDSDDSGSLFEKMGQLAYSMCKKYLVDIYNHKFELIKQNED 199
************************************************************************************************** PP
TIGR00460 198 eatyapkikkeeeridweqsaeellnkiralgPlpalklalegkrikiveakvvelarl.kaskpGeivdakkkgilvacgknelllveelqpegkkv 294
e+t++++i+ eee i+w++++ +++n+ir+l P p ++++++ +r ki +kv++l+++ k++ pG+i+d++k+gi+v + +++ll+ e+q egkk+
MMSYN1_0390 200 EVTFCKNISSEEEKINWNNTSLDIFNLIRSLSPSPISYTTINNQRYKIKSSKVIDLDNQnKNVMPGTIIDINKQGIVVKTL-DKALLILEIQKEGKKM 296
********************************************************9998899******************.9999999********9 PP
TIGR00460 295 lraedfl 301
+ a++ +
MMSYN1_0390 297 ILASNYY 303
9998877 PP
>> TIGR00639 PurN: phosphoribosylglycinamide formyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.6 0.0 4.5e-16 6.7e-13 69 175 .. 71 177 .. 8 193 .. 0.81
Alignments for each domain:
== domain 1 score: 46.6 bits; conditional E-value: 4.5e-16
TIGR00639 69 eelaeelkeeevdlivlAGfmrilgstflsafagkilNiHPsLlpafpGlhaveqAleagvkeaGctVHyvdeevDtGpiivqakvpilpedteetle 166
e+ + l++ e d++++ f + + ++l+ + +N H sLlp+ +G ++ A+++g+k +G+t+ + +++D+G+ vq+ ++il+ d+ +l
MMSYN1_0390 71 GEIYDDLAKLEFDFLITCAFGQFIPTKILKLAKIDSINFHGSLLPKLRGGAPIQYAIKNGDKKTGITIMQMVKQMDAGDYYVQESIDILDSDDSGSLF 168
47899999************************99********************************************************99999888 PP
TIGR00639 167 qRikkaEhk 175
+++ + +
MMSYN1_0390 169 EKMGQLAYS 177
877666555 PP
>> TIGR00655 PurU: formyltetrahydrofolate deformylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.4 0.2 9.2e-11 1.4e-07 111 243 .. 28 164 .. 17 201 .. 0.85
Alignments for each domain:
== domain 1 score: 29.4 bits; conditional E-value: 9.2e-11
TIGR00655 111 eveialvisnhee.lrelvekfdipfhlvpaeketrveaekkelellkel...evdlvvLakymriLspdfvkryenkiinihhsfLPafiGakPyqr 204
+ve++lvis ++ + + + + p + + e++ +v + +k e+ ++l e d+++ + + + ++ +k + in h s+LP + G +P q
MMSYN1_0390 28 QVEVVLVISQPDKpIGRKKQIVYTPVKKLALENNLKVVQPNKIGEIYDDLaklEFDFLITCAFGQFIPTKILKLAKIDSINFHGSLLPKLRGGAPIQY 125
68999999988762333344455677888899999**99999999988777779******************************************** PP
TIGR00655 205 ayerGvkiiGatahyvteeLdeGPiieqdvvrvdhkdsv 243
a + G k G t + +++d+G +q+ + + d
MMSYN1_0390 126 AIKNGDKKTGITIMQMVKQMDAGDYYVQESIDILDSDDS 164
****************************99988655544 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (317 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 200 (0.0445633); expected 89.8 (0.02)
Passed bias filter: 84 (0.0187166); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 2069.21
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0390 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0391 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0391.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0391/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0391 [L=184]
Description: efp: translation elongation factor P 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-68 227.1 1.6 3.2e-68 227.0 1.6 1.0 1 TIGR00038 efp: translation elongation factor P
2.7e-29 100.6 0.8 3e-29 100.5 0.8 1.0 1 TIGR02178 yeiP: elongation factor P-like protein YeiP
2.2e-07 28.7 0.0 3.6e-07 28.0 0.0 1.4 1 TIGR00037 eIF_5A: translation elongation factor IF5A
Domain annotation for each model (and alignments):
>> TIGR00038 efp: translation elongation factor P
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 227.0 1.6 2.1e-71 3.2e-68 2 184 .] 2 184 .] 1 184 [] 0.99
Alignments for each domain:
== domain 1 score: 227.0 bits; conditional E-value: 2.1e-71
TIGR00038 2 sandlrkGlvieldgelyvvlefehvkpGkgqafvrvklknlktgkvlektfksgekvekaeveekemqylYkdgdsyvfmdketyeqievekealgd 99
s+ndlr+G+++ +dg++y vle+ ++k+G++q+ v+vk kn++tg+ +e tf gekv+ka +e+kemqylY+dg++ ++m++etyeq++++ + l++
MMSYN1_0391 2 SVNDLRPGTTFLYDGNIYLVLEQAFSKTGRQQGKVTVKAKNMRTGARVELTFTGGEKVDKAMIERKEMQYLYNDGNDAYLMNTETYEQVSIPMTRLEW 99
79************************************************************************************************ PP
TIGR00038 100 aakfLkenmevevvlyegepisvelpnkvelevtetepgvkgdtassstKpatletGaevqVPlFieegekikvdtrtgeYveRa 184
+++fL ++ +++++ +e+e+++++lp kvel+v+e+e++vkgdt+s+++K+a+letG+e++VPlF+++g+ki+v++ +g+Yv+Ra
MMSYN1_0391 100 EKNFLVDGLMINMTEFENEVLGIDLPVKVELTVVEAEAAVKGDTTSGAQKKAILETGLEIMVPLFVNQGTKIIVSSADGKYVGRA 184
***********************************************************************************96 PP
>> TIGR02178 yeiP: elongation factor P-like protein YeiP
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.5 0.8 2e-32 3e-29 3 186 .] 4 184 .] 2 184 .] 0.93
Alignments for each domain:
== domain 1 score: 100.5 bits; conditional E-value: 2e-32
TIGR02178 3 selkkGlvveyngktllikdievssPqgrGgaklyklrlsdvrtGakveerfkaddvldtvellrrevsfsyvdGeeyvfldeedytlytlkkdeied 100
++l+ G+ y+g+++l+ + s +gr k ++ +++rtGa+ve f + + +d + r+e+++ y dG++ +++ e y ++ ++e
MMSYN1_0391 4 NDLRPGTTFLYDGNIYLVLEQAF-SKTGRQQGK-VTVKAKNMRTGARVELTFTGGEKVDKAMIERKEMQYLYNDGNDAYLMNTETYEQVSIPMTRLEW 99
788999999*********98555.566665544.3577899********************************************************* PP
TIGR02178 101 ellfiseglsgmsvllvdgeavalelPqsveleivetaPeikGasaskrtkPaklstGlvvqvPeyiatGerilinteerkfmgra 186
e f+ +gl +++ ++ e++ ++lP +vel +ve++ +kG ++s +k a l tGl+++vP ++ G +i++ +++k++gra
MMSYN1_0391 100 EKNFLVDGLM-INMTEFENEVLGIDLPVKVELTVVEAEAAVKGDTTSGAQKKAILETGLEIMVPLFVNQGTKIIVSSADGKYVGRA 184
********75.5667899*******************************************************************8 PP
>> TIGR00037 eIF_5A: translation elongation factor IF5A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.0 0.0 2.4e-10 3.6e-07 7 103 .. 1 96 [. 1 117 [. 0.91
Alignments for each domain:
== domain 1 score: 28.0 bits; conditional E-value: 2.4e-10
TIGR00037 7 vevkaLrkggyvvidgepckivdisvskpGkhGaakarvvaigifdkkkrefvsPvtskvevPivdrkeaqvlaidggvvqlmdleteetlevkiPe 103
+ v+ Lr g + dg+ +++ + sk+G+ + k+ v+a ++ ++ + e +kv+ +++rke+q l dg+++ lm+ et+e+ +++
MMSYN1_0391 1 MSVNDLRPGTTFLYDGNIYLVLEQAFSKTGRQ-QGKVTVKAKNMRTGARVELTFTGGEKVDKAMIERKEMQYLYNDGNDAYLMNTETYEQVSIPMTR 96
67899999999999****************97.67******************************************************99888764 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (184 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 148 (0.0329768); expected 89.8 (0.02)
Passed bias filter: 90 (0.0200535); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 1390.69
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0391 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0392 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0392.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0392/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0392 [L=100]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (100 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 301 (0.0670677); expected 89.8 (0.02)
Passed bias filter: 105 (0.0233957); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 718.02
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0392 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0394 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0394.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0394/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0394 [L=786]
Description: lon: endopeptidase La 5=Equivalog Proteolysis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7e-264 876.0 18.4 1e-263 875.5 18.4 1.2 1 TIGR00763 lon: endopeptidase La
7.6e-35 118.4 14.7 2.3e-29 100.3 1.0 3.4 3 TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
4e-34 116.1 5.0 1.8e-32 110.7 2.5 2.6 2 TIGR00764 lon_rel: putative ATP-dependent protease
1.6e-27 94.3 1.4 1.9e-25 87.5 0.3 2.3 2 TIGR02902 spore_lonB: ATP-dependent protease LonB
5.7e-19 65.9 0.1 9.1e-19 65.2 0.1 1.2 1 TIGR02653 Lon_rel_chp: conserved hypothetical protein
7e-10 36.2 0.1 1.3e-08 32.0 0.0 2.1 2 TIGR00416 sms: DNA repair protein RadA
1.5e-08 31.3 0.1 1.5e-08 31.3 0.1 3.0 2 TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subun
4.3e-07 26.6 2.2 5.3e-07 26.3 0.8 1.7 2 TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
1.3e-06 25.6 0.1 3e-06 24.5 0.1 1.7 1 TIGR00635 ruvB: Holliday junction DNA helicase RuvB
1.8e-06 24.8 4.8 4.9e-05 20.0 0.1 2.5 3 TIGR00368 TIGR00368: Mg chelatase-like protein
2.1e-05 21.4 0.0 4.2e-05 20.5 0.0 1.6 1 TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
5.5e-05 20.4 0.1 0.00011 19.4 0.1 1.6 1 TIGR01242 26Sp45: 26S proteasome subunit P45 family
9.1e-05 18.8 0.4 9.1e-05 18.8 0.4 1.9 2 TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
0.00033 17.3 1.2 0.00042 16.9 0.0 1.7 2 TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
0.00048 18.2 0.2 0.00048 18.2 0.2 2.9 3 TIGR03499 FlhF: flagellar biosynthesis protein FlhF
0.00055 17.9 3.0 0.00099 17.1 0.1 2.6 2 TIGR02173 cyt_kin_arch: putative cytidylate kinase
0.0049 14.4 1.0 0.011 13.2 0.0 2.0 2 TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
0.009 13.2 0.1 0.009 13.2 0.1 3.2 3 TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and
------ inclusion threshold ------
0.018 12.6 2.4 0.03 11.9 0.1 2.4 2 TIGR01351 adk: adenylate kinase
0.021 12.5 0.1 0.037 11.7 0.1 1.4 1 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
Domain annotation for each model (and alignments):
>> TIGR00763 lon: endopeptidase La
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 875.5 18.4 4.5e-266 1e-263 2 795 .] 8 778 .. 7 778 .. 0.89
Alignments for each domain:
== domain 1 score: 875.5 bits; conditional E-value: 4.5e-266
TIGR00763 2 llpvrrkvlfPgfilkivvkdeksiklikealkkkqkyllaflkkdkeeeedvieeeedvykvgvlaqilelvklkdekskketlkvvleglrrikik 99
+++ r +++P + ++i+ ++ ks+++++++++ +++++++ ++ eee+ + e+++ g++a+ + k+ t++v l+ ++iki+
MMSYN1_0394 8 VVVTRGIFILPSTSKTIEFGRVKSKNALNASADLYNNQIVVVSQESPLEEEP---NLEHLFYLGTVADLSVKKV-----WKDGTISVELNYNQKIKID 97
67788899*******************************8888888778887...9***********9865544.....3457999************ PP
TIGR00763 100 elvekeevlvvkveelkeeelekddeevkalseeiletlkeliklsklfreqvetlkalek..........leepakladl..vaaslelkeveekqe 185
e+ve+ +++ + + + ++l k+d +++i+e l+el + +++ +++ + ++ + + + l+ l + ++ +++ ek++
MMSYN1_0394 98 EFVEEDNIIYAIGSVFE-DKLPKTDA----QKTKIKEALEELQEKHSFNTSELLLAFNENDfnklnsliyqIIDKMPLVSLntKLLLIQSTSILEKLD 190
****9777665444444.34433333....33333333333333333333333333333330000002224333333333300333444445566666 PP
TIGR00763 186 vleevnvekRLkkvlellkkelelaklqekiakkveeklekeqreylLkeqlkaikkElGeekdkkdelieklkekleelklpeevlkviekelekle 283
+l+e+ + +R k +++l ++ +++ ++++i+kk+++k++k+q+ey+L+e+++ ik+El +e+ + ++l +k+k++lee +pe+v+++i + ++++e
MMSYN1_0394 191 LLKELII-NRPKSTVKLNNNLNNNSTVDSEINKKLKDKMDKQQKEYYLREKMRIIKEELDDENSDASQL-DKYKKRLEEEPFPESVKEKILSSIKRIE 286
6666655.466677777777779***************************************9999999.**************************** PP
TIGR00763 284 lleasssefsvtrnYldwltdlPwgkvskenldlkrakeiLdedHyglkkvKeRilEylavkklrkklkgkilclvGPPGVGKtSlaksiAkalnrkf 381
++++ s+e++v rnY+dw++++Pw+++s++ dlk a+eiL++ H+glkkvKeRi+Eylavk+++k+lkg+i+ +vGPPGVGKtSla+siA+al++kf
MMSYN1_0394 287 TMQPGSAEVNVERNYVDWMMSIPWWEQSEDIDDLKYAQEILEKHHFGLKKVKERIIEYLAVKQKTKSLKGPIITFVGPPGVGKTSLARSIAEALGKKF 384
************************************************************************************************** PP
TIGR00763 382 vrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenPlillDEiDKlgssvrGdPasaLLEvLDpeqNakFlDhYldvpiDlskVlfvataNsi 479
v++slGG+kD++ei+GHR+tYvG++PG+iiq+lk++k++nPl+llDEiDK++s++rGdPasa+LEvLDpeqN++F+DhY++ p+Dls V+f+ataN+i
MMSYN1_0394 385 VKVSLGGVKDESEIRGHRKTYVGSMPGRIIQALKRAKVKNPLFLLDEIDKMASDNRGDPASAMLEVLDPEQNKEFSDHYIEEPYDLSTVMFIATANYI 482
************************************************************************************************** PP
TIGR00763 480 dtiPepLldRmEvielsgYveeeKleiakkyLipkaleeaglkkeeveisdealkelikkYtreaGVRnLekqiekilRkaalklveekekkkeaeee 577
++iPe+L dRmE+i+ls+Y+e eK++iak+yL +k lee +l ++e++++dea e+ik+YtreaGVR+Le+++++i+Rk ++kl++
MMSYN1_0394 483 ENIPEALYDRMEIINLSSYTEIEKMHIAKDYLTKKILEEDQLTEDELRFTDEAYDEIIKYYTREAGVRQLERHLATIARKFIVKLLNG---------- 570
*************************************************************************************975.......... PP
TIGR00763 578 keeaelkkeekesveideenlkkylgkpvfesekldeetkvGvvmGLawtsvGGsvlyiEttlvegkkgeleltGqLgdvmkESaqialtyvrailee 675
+++++++++e + +ylgk++fe+++ +ee++vGvv+GLa+t+ GG++l iE+++ +g kg+l+ltG+Lg+vmkESa+ialtyv+a+ e+
MMSYN1_0394 571 ---------KITNLVVTREVVVQYLGKHIFEHTSKEEESQVGVVTGLAYTQFGGDILPIEVSTYNG-KGNLTLTGKLGEVMKESATIALTYVKANHEK 658
.........46789****************************************************.******************************* PP
TIGR00763 676 keienkffekadihlHvPeGatpKDGPSAGvtlvtallSllldkkvrkdvamtGEltLtGkvlpigglkeKviaAkrsgiktiilPeknrrdleelpe 773
i+++ f++ dih+HvPeGa+pKDGPSAG+tl tal+S l++++v+kd mtGE+tL+G+vlpiggl+eK i+A rsg+k+i++P+kn +d+e++p+
MMSYN1_0394 659 FGISKDKFDDIDIHIHVPEGAVPKDGPSAGITLTTALISALSKQPVSKDFGMTGEITLRGNVLPIGGLREKSISAARSGLKHILIPSKNVKDIEDVPQ 756
************************************************************************************************** PP
TIGR00763 774 nvkedleillvkeleevlekaf 795
+v++ l+i++v+++e+v+e +f
MMSYN1_0394 757 EVQDVLKITPVSKYEDVYEIIF 778
*******************987 PP
>> TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.8 4.5 1.6e-05 0.0035 81 145 .. 211 275 .. 177 291 .. 0.79
2 ! 9.3 0.0 0.00037 0.082 132 198 .. 311 379 .. 292 390 .. 0.72
3 ! 100.3 1.0 1e-31 2.3e-29 428 615 .] 584 778 .. 538 778 .. 0.87
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 1.6e-05
TIGR02903 81 lakrtveeeierkvekklverqekyleeirlqvlkekkgsensst..lkklerleklekkklaksiq 145
+ tv+ ei++k+++k+ ++q++y+ +++++ke+ + ens++ l k++ ++le++ + +s++
MMSYN1_0394 211 NNNSTVDSEINKKLKDKMDKQQKEYYLREKMRIIKEELDDENSDAsqLDKYK--KRLEEEPFPESVK 275
45679*********************999**********9998651155554..4566666655554 PP
== domain 2 score: 9.3 bits; conditional E-value: 0.00037
TIGR02903 132 leklekkklaksiqsllrpralseivGqeraikallak..laspfpqhiilyGppGvGkttaarlalee 198
e+ e++ k +q++l +++ +er i+ l k s i + GppGvGkt+ ar + e
MMSYN1_0394 311 WEQSEDIDDLKYAQEILEKHHFGLKKVKERIIEYLAVKqkTKSLKGPIITFVGPPGVGKTSLARSIAEA 379
5566666666778888888888877778888887765511444445556678************87775 PP
== domain 3 score: 100.3 bits; conditional E-value: 1e-31
TIGR02903 428 sisrlspyeklkaedkaevGkvfGlGvsgylGsvleieavafeakekGkGtvrfndtaGsmakdsvfnaasvirk......itdkdlkdydihvnviG 519
+ +e++ +e++ +vG v Gl +++ G +l ie ++ +GkG++ + G + k+s a++ ++ i++ d dih+ v
MMSYN1_0394 584 QYLGKHIFEHTSKEEESQVGVVTGLAYTQFGGDILPIEVSTY----NGKGNLTLTGKLGEVMKESATIALTYVKAnhekfgISKDKFDDIDIHIHVPE 677
444445578889999***********************9988....599******************999999853333447788899********86 PP
TIGR02903 520 GG.ridGpsaGaaitlvilsalldkpirqdvaitGeislrGkikpvGGifekiyGakrkgiktvvipeenlk...dvpqglkdi.evkavktieelle 612
G dGpsaG ++t +++sal ++p+ +d +tGei+lrG++ p+GG+ ek a r g+k+++ip +n+k dvpq+++d+ ++++v++ e++ e
MMSYN1_0394 678 GAvPKDGPSAGITLTTALISALSKQPVSKDFGMTGEITLRGNVLPIGGLREKSISAARSGLKHILIPSKNVKdieDVPQEVQDVlKITPVSKYEDVYE 775
65268*****************************************************************9833358****99659**********99 PP
TIGR02903 613 ivl 615
i++
MMSYN1_0394 776 IIF 778
986 PP
>> TIGR00764 lon_rel: putative ATP-dependent protease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.3 0.0 0.0065 1.4 40 64 .. 359 383 .. 338 423 .. 0.82
2 ! 110.7 2.5 8.1e-35 1.8e-32 394 599 .. 577 784 .. 473 786 .] 0.88
Alignments for each domain:
== domain 1 score: 5.3 bits; conditional E-value: 0.0065
TIGR00764 40 vlliGePGvGksmlakamaellpke 64
+ ++G PGvGk+ la+++ae l k+
MMSYN1_0394 359 ITFVGPPGVGKTSLARSIAEALGKK 383
4579****************99876 PP
== domain 2 score: 110.7 bits; conditional E-value: 8.1e-35
TIGR00764 394 lekqladkyierkkeykvirveggevGrvnGlaiiGeqsGivlpieaivapaaskeeGkiivtgklgeiakeavlnvsalikkykge......diskk 485
+ + + +y+ ++ + + e+++vG+v Gla +G +lpie+ + +G++ +tgklge+ ke+ + + + +k + + ++
MMSYN1_0394 577 VTREVVVQYLGKHIFEHTSKEEESQVGVVTGLAYTQ-FGGDILPIEVS----TYNGKGNLTLTGKLGEVMKESATIALTYVKANHEKfgiskdKFDDI 669
56777778887766556667999**********876.99999999864....4456799*************98887777776665565666568899 PP
TIGR00764 486 dihiqflqtyegveGdsasisvatavisaleeiPvkqdvaltGslsvrGevlpvGGvtekieaaieaGikkviiPksnekdvl.lekekekkieiiPv 582
dihi + +G sa i+++ta+isal + Pv +d+ +tG + +rG+vlp+GG+ ek +a++ G+k+++iP +n+kd+ + +e ++ ++i Pv
MMSYN1_0394 670 DIHIHVPEGAVPKDGPSAGITLTTALISALSKQPVSKDFGMTGEITLRGNVLPIGGLREKSISAARSGLKHILIPSKNVKDIEdVPQEVQDVLKITPV 767
*********999*********************************************************************96367889999****** PP
TIGR00764 583 erldevlevalvesekk 599
++ ++v e+++++++++
MMSYN1_0394 768 SKYEDVYEIIFKNNNQQ 784
***********998875 PP
>> TIGR02902 spore_lonB: ATP-dependent protease LonB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.6 0.0 0.0051 1.2 90 109 .. 360 379 .. 333 389 .. 0.81
2 ! 87.5 0.3 8.3e-28 1.9e-25 328 530 .. 582 777 .. 466 778 .. 0.72
Alignments for each domain:
== domain 1 score: 5.6 bits; conditional E-value: 0.0051
TIGR02902 90 iiyGppGvGktaaarlvlee 109
GppGvGkt+ ar + e
MMSYN1_0394 360 TFVGPPGVGKTSLARSIAEA 379
356************88765 PP
== domain 2 score: 87.5 bits; conditional E-value: 8.3e-28
TIGR02902 328 viesgqyspksekklssepkiGlvnGlavyGpnsGavlevevtaekaenaaGsinvtGiieeeelggsskevkrkssikgsvenvlavlksvldinlk 425
v++ + +++ +e+++G+v Gla + + G +l++ev++ n +G++++tG + e + ++s + + + +k+ e + + k+ +
MMSYN1_0394 582 VVQYLGKHIFEHTSKEEESQVGVVTGLAYT-QFGGDILPIEVSTY---NGKGNLTLTGKLGEV-M-KESAT-IALTYVKANHEK-FGISKDK----FD 667
444433344444555789*********965.6689******9875...66799*****88653.3.33333.344566666554.5666655....67 PP
TIGR02902 426 dydihinfp.ggipvdGpsaGvaiavaiysalkkvpidnkvaltGeislnGlvkpvGGvsskieaakkaGakkviipkenyqevleslek....ikvi 518
d dihi+ p g++p dGpsaG++++ a+ sal+k p+ + +tGei+l+G+v p+GG+ +k +a+++G k+++ip +n +++++ ++ +k+
MMSYN1_0394 668 DIDIHIHVPeGAVPKDGPSAGITLTTALISALSKQPVSKDFGMTGEITLRGNVLPIGGLREKSISAARSGLKHILIPSKNVKDIEDVPQEvqdvLKIT 765
99*****973669********************************************************************99987544311115788 PP
TIGR02902 519 pvknlkevlevv 530
pv + ++v e++
MMSYN1_0394 766 PVSKYEDVYEII 777
888888888776 PP
>> TIGR02653 Lon_rel_chp: conserved hypothetical protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 65.2 0.1 4.1e-21 9.1e-19 511 670 .. 617 779 .. 584 783 .. 0.86
Alignments for each domain:
== domain 1 score: 65.2 bits; conditional E-value: 4.1e-21
TIGR02653 511 lyrfevqvvaGsGklkvsGlGsetaakesikvafdylkgnlkrisasa.kfsekdyhlevvdllntgvsteaslaalialisallkrsvqeqmvilGe 607
+ +ev G+G l ++G +kes + a+ y+k+n+++ ++s kf++ d h++v + + + a+++ alisal k++v+++ + Ge
MMSYN1_0394 617 ILPIEVSTYNGKGNLTLTG-KLGEVMKESATIALTYVKANHEKFGISKdKFDDIDIHIHVPEGAVPKDGPSAGITLTTALISALSKQPVSKDFGMTGE 713
6679999999999999999.56778********************98648************************************************ PP
TIGR02653 608 ltlgGvvkavedlaeslqlaldsGakrvllplssasdiatvpaelfskfq...isfysdpvdavyk 670
+tl G+v ++ l e+ a sG k++l+p ++ +di +vp e+ + ++ +s y+d + ++k
MMSYN1_0394 714 ITLRGNVLPIGGLREKSISAARSGLKHILIPSKNVKDIEDVPQEVQDVLKitpVSKYEDVYEIIFK 779
******************************************998665541125778888888877 PP
>> TIGR00416 sms: DNA repair protein RadA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.7 0.0 0.086 19 93 125 .. 355 387 .. 336 459 .. 0.86
2 ! 32.0 0.0 5.9e-11 1.3e-08 353 450 .. 666 764 .. 650 768 .. 0.89
Alignments for each domain:
== domain 1 score: 1.7 bits; conditional E-value: 0.086
TIGR00416 93 kGsliliGGdPGiGkstlllqvaaqlaknskkv 125
kG +i G PG+Gk+ l +a l k+ kv
MMSYN1_0394 355 KGPIITFVGPPGVGKTSLARSIAEALGKKFVKV 387
78999999**********999999999986655 PP
== domain 2 score: 32.0 bits; conditional E-value: 5.9e-11
TIGR00416 353 lakqdvflnva.GGvkveepavdlalvialvssfrdrkldqklvilGevglaGeirevssleerlkeaaklGfkkaivPkansdkkekegikvievkk 449
+++ d++++v G v + p++ ++l al+s++ ++++ ++ + Ge++l G+++++ l+e+ aa+ G+k++++P +n++++e +v +v k
MMSYN1_0394 666 FDDIDIHIHVPeGAVPKDGPSAGITLTTALISALSKQPVSKDFGMTGEITLRGNVLPIGGLREKSISAARSGLKHILIPSKNVKDIEDVPQEVQDVLK 763
5678999999637799999****************************************************************998887777777766 PP
TIGR00416 450 v 450
+
MMSYN1_0394 764 I 764
6 PP
>> TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.3 0.1 6.8e-11 1.5e-08 441 582 .. 313 453 .. 281 484 .. 0.73
2 ? 3.7 0.4 0.015 3.4 669 725 .. 521 573 .. 486 579 .. 0.68
Alignments for each domain:
== domain 1 score: 31.3 bits; conditional E-value: 6.8e-11
TIGR02639 441 ssddkekLknlekeLkkkifGqdeaiealvk..aikrsraGlkeenkPvgsflfvGptGvGktelakqLaeelgvellrfDmseymekhtvsrliGsP 536
+s+d + Lk ++ L+k+ fG ++ e++++ a+k+ k+ + P+ fvGp GvGkt la+++ae+lg ++++ + ++ s + G
MMSYN1_0394 313 QSEDIDDLKYAQEILEKHHFGLKKVKERIIEylAVKQKT---KSLKGPI--ITFVGPPGVGKTSLARSIAEALGKKFVKVSLGGVKDE---SEIRGHR 402
46788999999**************99999833444444...4445566..4589***************************999887...6778*** PP
TIGR02639 537 pGyvGfeeGGlLteavr..knPyavlLlDeiekahpDi....lnilLqvmDy 582
yvG G + +a++ k + + LlDei+k +D + +L v+D
MMSYN1_0394 403 KTYVGSMPG-RIIQALKraKVKNPLFLLDEIDKMASDNrgdpASAMLEVLDP 453
*****8765.566677612346789********8776311116777777774 PP
== domain 2 score: 3.7 bits; conditional E-value: 0.015
TIGR02639 669 ekkLaekkveleleddaikylaekgydeefGarelkrvieeeikkkladeiLfGklk 725
e++L+e el+++d+a+ ++ k y++e G+r+l+r +++ i +k++ ++L Gk++
MMSYN1_0394 521 EDQLTED--ELRFTDEAYDEII-KYYTREAGVRQLERHLAT-IARKFIVKLLNGKIT 573
3556644..68899***99998.68************9986.777777788888876 PP
>> TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.3 0.8 2.4e-09 5.3e-07 454 709 .. 316 588 .. 266 602 .. 0.73
2 ? -1.5 0.0 0.6 1.3e+02 392 430 .. 733 771 .. 726 778 .. 0.77
Alignments for each domain:
== domain 1 score: 26.3 bits; conditional E-value: 2.4e-09
TIGR01243 454 diggleevkqelreavewplka..kevfeklgirpp....kg..vllfgppgtgktllakavatesganfiavr..g....peils...kwvgeseka 534
di l+ qe+ e + lk+ ++++e l ++ kg + + gppg gkt la+++a+ g f+ v g ei +vg +
MMSYN1_0394 316 DIDDLKY-AQEILEKHHFGLKKvkERIIEYLAVKQKtkslKGpiITFVGPPGVGKTSLARSIAEALGKKFVKVSlgGvkdeSEIRGhrkTYVGSMPGR 412
4544443.3667777777777522457777777643111255323467**********************987532222224665322259******* PP
TIGR01243 535 ireifrkarqaapaiifldeidaiap.argadlsea..vtdrivnqllte..ldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeear 627
i + +++a+ p +ldeid +a +rg s v d n+ +++ ++ + s v+ ia++n + + al r++ +i + + e +
MMSYN1_0394 413 IIQALKRAKVKNPL-FLLDEIDKMASdNRGDPASAMleVLDPEQNKEFSDhyIEEPYDLSTVMFIATANYIENIPEALYD--RME-IINLSSYTEIEK 506
*********99995.579*****9973688766654558999999988873345556678999*********99999963..554.566677788889 PP
TIGR01243 628 leifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeekeilkdlkvkkkdflealkk 709
++i k + + l ed e+ + t+ i+ +rea + +l + + ++a++ + + + + +l+v+++ ++ l k
MMSYN1_0394 507 MHIAKDYLTKKILEEDQLTEDELRFTDEAYDEIIKYYTREAGVRQLERHLATIARKFIVKLLNGKITNLVVTREVVVQYLGK 588
99999876666677776555555555444456799****************9999998888888888899999888877754 PP
== domain 2 score: -1.5 bits; conditional E-value: 0.6
TIGR01243 392 aamaalrrllregkidleaeeipkevleelkvtkkdfke 430
aa l+ +l +k + e++p+ev + lk+t +e
MMSYN1_0394 733 AARSGLKHILIPSKNVKDIEDVPQEVQDVLKITPVSKYE 771
66677888777777778999***********99655554 PP
>> TIGR00635 ruvB: Holliday junction DNA helicase RuvB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.5 0.1 1.3e-08 3e-06 6 65 .. 331 391 .. 327 512 .. 0.85
Alignments for each domain:
== domain 1 score: 24.5 bits; conditional E-value: 1.3e-08
TIGR00635 6 fiGqekvkeklqlfikaakkrkealdh..vllyGPPGlGkttlakiiakelgvklkitsgpa 65
+ G +kvke++ ++ a k++ ++l + ++GPPG+Gkt+la+ ia+ lg+k +s +
MMSYN1_0394 331 HFGLKKVKERIIEYL-AVKQKTKSLKGpiITFVGPPGVGKTSLARSIAEALGKKFVKVSLGG 391
678899999996555.56666666653226689******************99976555444 PP
>> TIGR00368 TIGR00368: Mg chelatase-like protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.9 0.3 3.9 8.8e+02 401 442 .. 185 222 .. 153 239 .. 0.51
2 ! 6.5 0.0 0.0027 0.61 214 234 .. 359 379 .. 347 386 .. 0.87
3 ! 20.0 0.1 2.2e-07 4.9e-05 13 145 .. 617 754 .. 609 785 .. 0.77
Alignments for each domain:
== domain 1 score: -3.9 bits; conditional E-value: 3.9
TIGR00368 401 rgessaevkqrvlkareiqikraekdakislnaelnsdeiek 442
e + +k+ +++ r + + ++ +++ n++++s+ i+k
MMSYN1_0394 185 ILEKLDLLKELIIN-RPKSTVKLNN--NLNNNSTVDSE-INK 222
33444444443333.3333334444..45666666654.332 PP
== domain 2 score: 6.5 bits; conditional E-value: 0.0027
TIGR00368 214 llllGPPGsGktllakrlqgl 234
+ ++GPPG Gkt la+ +
MMSYN1_0394 359 ITFVGPPGVGKTSLARSIAEA 379
679************998765 PP
== domain 3 score: 20.0 bits; conditional E-value: 2.2e-07
TIGR00368 13 lvevevdiskGlpgltlvGlpettvkesrervksalkn.......agfkfPakrivinlaPadlkkeGgrfdlpiaigilaaseqldakkldeylllg 103
+ +ev +G+ ltl G ++ +kes + +k ++ kf i i + ++k+G++ ++++ +++ a + + +++ + g
MMSYN1_0394 617 ILPIEVSTYNGKGNLTLTGKLGEVMKESATIALTYVKAnhekfgiSKDKFDDIDIHIHVPEGAVPKDGPSAGITLTTALISALSKQPVS--KDFGMTG 712
5679***********************987655555540101112344566667999999999***************99887666554..589**** PP
TIGR00368 104 elaldGklravkgvlpaiaaakkselkfiivakenaeeaslv 145
e++l G++ + g + a +s+lk i+++++n +++ v
MMSYN1_0394 713 EITLRGNVLPIGGLREKSISAARSGLKHILIPSKNVKDIEDV 754
***********************************9987655 PP
>> TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.5 0.0 1.9e-07 4.2e-05 71 162 .. 341 437 .. 323 522 .. 0.83
Alignments for each domain:
== domain 1 score: 20.5 bits; conditional E-value: 1.9e-07
TIGR01241 71 ivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsis..G....sd...fvemfvGvGasrvrDlfeqakknaPciifiDeiDa 159
i+++L +k ++l + i + +vGpPG+Gkt la+++a g f+++s G s+ + +vG r+ +++ak + P ++DeiD
MMSYN1_0394 341 IIEYLAVKQKTKSLKGPI---ITFVGPPGVGKTSLARSIAEALGKKFVKVSlgGvkdeSEirgHRKTYVGSMPGRIIQALKRAKVKNPL-FLLDEIDK 434
677888888877776655...6789****************99*****99853332223322234679999999************995.578***98 PP
TIGR01241 160 vGr 162
+ +
MMSYN1_0394 435 MAS 437
765 PP
>> TIGR01242 26Sp45: 26S proteasome subunit P45 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.4 0.1 4.9e-07 0.00011 159 236 .. 359 444 .. 315 569 .. 0.75
Alignments for each domain:
== domain 1 score: 19.4 bits; conditional E-value: 4.9e-07
TIGR01242 159 vllyGppGtGktllakavaeetnatfirv....v..gsel...vkkyiGeGarlvrevfklakekapsiifideidaiaakrldsst 236
+ + GppG+Gkt la+++ae f++v v se+ k y+G + + +k ak k p ++deid +a+ +
MMSYN1_0394 359 ITFVGPPGVGKTSLARSIAEALGKKFVKVslggVkdESEIrghRKTYVGSMPGRIIQALKRAKVKNPL-FLLDEIDKMASDNRGDPA 444
4567************************943332334676332467***988777788899****995.568******997655544 PP
>> TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.8 0.4 4.1e-07 9.1e-05 428 683 .. 186 438 .. 170 440 .. 0.66
2 ? -0.6 0.1 0.31 70 749 824 .. 483 557 .. 461 582 .. 0.74
Alignments for each domain:
== domain 1 score: 18.8 bits; conditional E-value: 4.1e-07
TIGR03345 428 iealeaelellereeelgaeeeerlaeleeelaaleeelaalearwekekelveeikelrekleeeeeeeaeeee....aleael..aeleaelaelq 519
+e+l++ +el+ + ++ + +++l++ ++ ++++++l+++ ++ +ke l e+++ ++e+l++e+++ ++ ++ e+ + + +e+ l++++
MMSYN1_0394 186 LEKLDLLKELIINRPKSTVKLNNNLNNNSTVDSEINKKLKDKMDKQQKEYYLREKMRIIKEELDDENSDASQLDKykkrLEEEPFpeSVKEKILSSIK 283
55556556666666667777788888888888888899999999999999999999999999877444443333322211112221022344455655 PP
TIGR03345 520 geeplvsaevdeevvaevvadW.tGiPvgrlvkdeiekvleleekleervvGqdealeaiaerirtarAgledpkkPlgvFllvGpsGvGktetalal 616
+ e++ ++ e v dW iP + ++++i+ ++ +e le++ G ++ e+i e + + + + + k P + +vGp GvGkt a ++
MMSYN1_0394 284 RIETM-QPGSAEVNVERNYVDWmMSIPWWE-QSEDIDDLKYAQEILEKHHFGLKKVKERIIEYLAVKQ-KTKSLKGP--IITFVGPPGVGKTSLARSI 376
55554.444444455555556625899876.5677999999999999998886666666665554432.33444444..56679************** PP
TIGR03345 617 AellyGgeqnlitinmsefqeaHtvstLkGsPPGYvGyGeGGvLteAvRrkP..ysvvLLDevekAhpd 683
Ae+l g ++++ + + +++ s++ G YvG G ++ A++r LLDe++k +d
MMSYN1_0394 377 AEAL--G-KKFVKVSLGGVKDE---SEIRGHRKTYVGSMPGRII-QALKRAKvkNPLFLLDEIDKMASD 438
***9..4.55677888888877...7889999999998776655.555554311357899999997665 PP
== domain 2 score: -0.6 bits; conditional E-value: 0.31
TIGR03345 749 kvfkpAllgRlevvpylplsdevlaeivelkleriakrlkenykaeleydealveeivarctevesGaRaidaile 824
++ + Al R+e++ ++ +i++ l + ++ + el++++++ +ei++ t e+G R++++ l
MMSYN1_0394 483 ENIPEALYDRMEIINLSSYTEIEKMHIAKDYLTKKILEEDQLTEDELRFTDEAYDEIIKYYT-REAGVRQLERHLA 557
567789999999999888888888888887776544444445567999********998765.6899999998764 PP
>> TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.9 0.0 1.9e-06 0.00042 306 358 .. 345 408 .. 323 441 .. 0.75
2 ? -2.7 0.2 1.7 3.8e+02 446 494 .. 496 546 .. 487 560 .. 0.70
Alignments for each domain:
== domain 1 score: 16.9 bits; conditional E-value: 1.9e-06
TIGR03922 306 lavaqrskHl.....llaGPPGtGkttiArvvakiy......aGlgvlrkpevrEvsRadlige 358
lav+q++k l ++GPPG Gkt++Ar +a+ + lg ++ ++ + +R+ ++g
MMSYN1_0394 345 LAVKQKTKSLkgpiiTFVGPPGVGKTSLARSIAEALgkkfvkVSLGGVKDESEIRGHRKTYVGS 408
6777777754333227**********97776655431111224677788888778888888876 PP
== domain 2 score: -2.7 bits; conditional E-value: 1.7
TIGR03922 446 ieFesYspdElveiakrmaeer...dsvlddaAaealleaatklaqestpda 494
i+ +sY+ E + iak + +++ ++ l++ ea+ ++ ++ t +
MMSYN1_0394 496 INLSSYTEIEKMHIAKDYLTKKileEDQLTEDELRFTDEAYDEIIKYYTR-E 546
78889999999999998888753335666666666666667666666664.3 PP
>> TIGR03499 FlhF: flagellar biosynthesis protein FlhF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.4 5.2 4 8.9e+02 85 190 .. 125 233 .. 110 260 .. 0.56
2 ? 2.1 4.6 0.17 37 99 167 .. 217 288 .. 193 317 .. 0.57
3 ! 18.2 0.2 2.1e-06 0.00048 169 212 .. 329 370 .. 312 387 .. 0.76
Alignments for each domain:
== domain 1 score: -2.4 bits; conditional E-value: 4
TIGR03499 85 eekekeaeekaaeaaqeaekkleeae.........eelrkelkalkellekqlselal..eeedperakllkklleagvseelarelleklkekedae 171
++ ++ ee +++ + + ++++++l++l+ ++++++ l +++ + ++ l++ ++ +el+ + +++ + +++
MMSYN1_0394 125 TKIKEALEELQEK------------HsfntselllAFNENDFNKLNSLIYQIIDKMPLvsLNTKLLLIQSTSILEKLDLLKELIINRPKSTVKLNNNL 210
2222223333333............1233334455666778888888888888887777766667777777778888877777766665555544444 PP
TIGR03499 172 eareklreaLekkl....svkke 190
++ +++ + ++kkl + +++
MMSYN1_0394 211 NNNSTVDSEINKKLkdkmDKQQK 233
44444444444444000033333 PP
== domain 2 score: 2.1 bits; conditional E-value: 0.17
TIGR03499 99 aqeaekkleeae......eelrkelkalkellekqlselaleeedperakllkklleagvseelarelleklke...k 167
++e +kkl+++ lr++++ +ke l++++s ++ +k k+l+e+ + e++ +++l+++k+
MMSYN1_0394 217 DSEINKKLKDKMdkqqkeYYLREKMRIIKEELDDENS------DASQLDKYKKRLEEEPFPESVKEKILSSIKRietM 288
2222222222221111114455555555555555555......56799999999999999999999999999986532 PP
== domain 3 score: 18.2 bits; conditional E-value: 2.1e-06
TIGR03499 169 daeeareklreaLekklsvkkeedeilekggviaLvGptGvGKT 212
+ + +k++e + + l vk++++ l+ + +i++vGp+GvGKT
MMSYN1_0394 329 KHHFGLKKVKERIIEYLAVKQKTK-SLKGP-IITFVGPPGVGKT 370
555577899999999994444444.44555.************9 PP
>> TIGR02173 cyt_kin_arch: putative cytidylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.5 0.7 1.1 2.6e+02 51 74 .. 218 241 .. 199 250 .. 0.58
2 ! 17.1 0.1 4.4e-06 0.00099 2 36 .. 358 394 .. 357 402 .. 0.81
Alignments for each domain:
== domain 1 score: -0.5 bits; conditional E-value: 1.1
TIGR02173 51 aeeekeiDkkiDrkikeiaekekn 74
e +k++ k+D+++ke+ +ek
MMSYN1_0394 218 SEINKKLKDKMDKQQKEYYLREKM 241
334455555666677766666654 PP
== domain 2 score: 17.1 bits; conditional E-value: 4.4e-06
TIGR02173 2 iivisGpPGsGkttvakilaeklslkli..saGkire 36
ii+ GpPG Gkt++a+ +ae l+ k++ s G +++
MMSYN1_0394 358 IITFVGPPGVGKTSLARSIAEALGKKFVkvSLGGVKD 394
7999********************9975226666655 PP
>> TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.2 0.2 5 1.1e+03 46 84 .. 198 236 .. 196 252 .. 0.76
2 ! 13.2 0.0 4.7e-05 0.011 21 50 .. 356 385 .. 333 407 .. 0.72
Alignments for each domain:
== domain 1 score: -3.2 bits; conditional E-value: 5
TIGR02640 46 drPvvllnGdaelktsdlvGeeagyerkkvldqfihnvv 84
+rP ++ +++l+++ v +e +++ k +d+ ++ +
MMSYN1_0394 198 NRPKSTVKLNNNLNNNSTVDSEINKKLKDKMDKQQKEYY 236
688888899999999999999999999999887655544 PP
== domain 2 score: 13.2 bits; conditional E-value: 4.7e-05
TIGR02640 21 gypvhlrGPaGtGktslalhvakkrdrPvv 50
g + ++GP G Gktsla+ +a+ +++ v
MMSYN1_0394 356 GPIITFVGPPGVGKTSLARSIAEALGKKFV 385
34578******************9987665 PP
>> TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.2 5.5 4 9e+02 234 344 .. 126 242 .. 112 267 .. 0.57
2 ! 13.2 0.1 4e-05 0.009 39 60 .. 359 380 .. 336 386 .. 0.75
3 ? 0.8 0.1 0.25 56 141 195 .. 464 525 .. 421 569 .. 0.71
Alignments for each domain:
== domain 1 score: -3.2 bits; conditional E-value: 4
TIGR02397 234 kveellglvseekll...elleailkkdleealklleellek....gvdleklledliellrdlllvkktkselleveeeeeeslkekaeklslekll 324
k++e l ++e++ + ell a+ ++d +++ +l+ ++++k + +++ ll + +++l++l l+k+ + + + + +++l ++++++++e +
MMSYN1_0394 126 KIKEALEELQEKHSFntsELLLAFNENDFNKLNSLIYQIIDKmplvSLNTKLLLIQSTSILEKLDLLKELIINRPKSTVKLNNNL-NNNSTVDSEINK 222
4444444444444430004444555566666666666555542222567777777777777777777777633333333333333.334445555555 PP
TIGR02397 325 ellkilleaekelkvsenkr 344
+l + + +++ke+ e+ r
MMSYN1_0394 223 KLKDKMDKQQKEYYLREKMR 242
55556666666555555444 PP
== domain 2 score: 13.2 bits; conditional E-value: 4e-05
TIGR02397 39 yLfsGprGvGKTsiArilAkal 60
f Gp GvGKTs+Ar +A+al
MMSYN1_0394 359 ITFVGPPGVGKTSLARSIAEAL 380
459*****************98 PP
== domain 3 score: 0.8 bits; conditional E-value: 0.25
TIGR02397 141 lEeP..pehvvFilaTtelekipetilSRcqrfdfk...kikeekiver.l.kkilkkekik 195
+EeP + v+Fi +e+ipe + R +++ +i++ +i++ l kkil++++++
MMSYN1_0394 464 IEEPydLSTVMFIATANYIENIPEALYDRMEIINLSsytEIEKMHIAKDyLtKKILEEDQLT 525
67773235677776666678888888888887776511145555555421224555555444 PP
>> TIGR01351 adk: adenylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.3 1.3 3e+02 32 76 .. 190 233 .. 185 244 .. 0.82
2 ? 11.9 0.1 0.00014 0.03 3 31 .. 360 390 .. 358 404 .. 0.86
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 1.3
TIGR01351 32 dllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeed 76
dll++ + ++ + + k+++ l++ + v+ ei +k +k++++++++
MMSYN1_0394 190 DLLKELIINRPKSTVKLNNNLNNNSTVDSEI-NKKLKDKMDKQQK 233
8899999999999999999999999998875.6677888888554 PP
== domain 2 score: 11.9 bits; conditional E-value: 0.00014
TIGR01351 3 vllGpPGsGKGTqakrlaeklg..lvhistG 31
++GpPG+GK + a+ +ae lg +v++s G
MMSYN1_0394 360 TFVGPPGVGKTSLARSIAEALGkkFVKVSLG 390
699****************997557777777 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.7 0.1 0.00016 0.037 5 57 .. 355 412 .. 351 417 .. 0.80
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 0.00016
TIGR03771 5 kGellgllGpnGaGkttllrai...lg..likvakGsvkvagkssrkgrreiGyvpqr 57
kG +++++Gp G Gkt+l r+i lg ++kv+ G vk +++ ++ ++ +G +p r
MMSYN1_0394 355 KGPIITFVGPPGVGKTSLARSIaeaLGkkFVKVSLGGVKDESEIRGHRKTYVGSMPGR 412
7999*****************9333333357888888888888888888889988877 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (786 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 473 (0.105392); expected 89.8 (0.02)
Passed bias filter: 205 (0.0456774); expected 89.8 (0.02)
Passed Vit filter: 54 (0.0120321); expected 4.5 (0.001)
Passed Fwd filter: 20 (0.00445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 20 [number of targets reported over threshold]
# CPU time: 0.42u 0.46s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 1820.53
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0394 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0398 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0398.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0398/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0398 [L=820]
Description: lipoprotein, putative 1=Unknown Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-175 583.8 132.4 1.7e-175 583.7 132.4 1.0 1 TIGR04547 Mollicu_LP: MOLPALP family lipoprotein
Domain annotation for each model (and alignments):
>> TIGR04547 Mollicu_LP: MOLPALP family lipoprotein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 583.7 132.4 3.8e-179 1.7e-175 1 807 [] 1 816 [. 1 816 [. 0.97
Alignments for each domain:
== domain 1 score: 583.7 bits; conditional E-value: 3.8e-179
TIGR04547 1 MKKlLaiLgalslvasSsltvvACtkkekedkseynnslknlqgiasllAksiILaDqng..isldylkntfknkklkdllkklnlkldendksldkk 96
MKK+L+ L+++sl++sSs ++v+Ct +++ +k++y ++lk++ +++s++A+siIL+D+n+ is+dy+++tf+++k++dl+k+++ k ++++ +dkk
MMSYN1_0398 1 MKKILIGLSTFSLLVSSS-SIVSCTITYQ-FKNNYLDQLKMILNTSSIAAQSIILSDKNTtnISTDYSLKTFSQTKINDLYKNEEKK-LADKYVIDKK 95
******************.**********.*****************************999*************************.********** PP
TIGR04547 97 stleellkryFgkdsylkktelddninldgk.kgtsngllsevlkegllgtktkkisesiekiLslisglstlllgslfss..lgsllksfikkdkte 191
+t+e+++k++F + +++k+te++++i++ +k ++t+n l ++++++tk+++++i+k+Lsl+s+++++l++++f++ +g+l+++f+++
MMSYN1_0398 96 ATYEYQFKSMFLSLENQKWTETLKKITTIDKnNQTTNLDL------AWNDQNTKTTDNNIFKTLSLASAGFNFLFSGDFTPnqQGDLINNFLSN---- 183
****************************999345555555......5*********************************99**********75.... PP
TIGR04547 192 lislllkliltnsklietinkfidkidvnkkykdlslenldnallisltngiglilnkkdfkevelstdndikeslkkaskalvdsiqkkdessnke. 288
+++ll++++++++++ + i+++ ++id+n+ y+ l++sl++++++++++k+++ ++ + +ke+l++ sk+l+d+i +kd ++ +
MMSYN1_0398 184 QFGLLESTVFKDNQFSNLIDQL-NNIDNNQFYN----------LTNSLLTQPEWLNSDKENNLTK----KTLKEILESSSKKLWDQILPKDGKQ--Df 264
7*********************.********99..........9*************88888743....3499*********************..65 PP
TIGR04547 289 lkdienvlkalaellkalqllqkklslfdetkdveqpkdaenLFsktktNseflkevlkkkteek.......itkqkkssINLKyllsflkyyLgelk 379
++d+++v+k+l++llka+++++ +++++++++ ++q++d+ +LF k+ktNsefl+evl+++ +++ ++kq+++sINLK+++sflk++L+ +
MMSYN1_0398 265 KIDWSKVFKPLIDLLKAFSIYYEQVEQRSDKNLTYQTIDPLHLFIKEKTNSEFLYEVLNTDLQTIyknksedQIKQEINSINLKKIISFLKNTLVFD- 361
79*************************************************************99*******************************9. PP
TIGR04547 380 kkdkkGynlQKllaiLFgtekeveyssetknkknakefykskkassgtnllnkiiesllnkelsllveilikslkslkiktkenfkkliksdllvkli 477
k+dk+Gy++QK+++iL+g++++ e++++++n+ k+fy+++++++ +l++kii+s+l+k +s+++++++ s+ + +l+k+i
MMSYN1_0398 362 KEDKHGYKFQKFVVILLGSASQKESQNDITNNFLLKPFYTWYEKNE--ELVKKIITSKLEKIESIKPYASFVSNI---------------TPILFKVI 442
**********************************************..********************9888776...............9******* PP
TIGR04547 478 psifeslanqgkl..ikdslkkilellk..klfieevkkiaefllskilekilkkNlfksLYsGdffkeisklikkliekladkiknsvdeifgndkp 571
++++++l++qg + ++++l+++l+l+k +++++ kk+++fl+sk+l+++l+ N+f++LY+++f+ke+++li++l +++++i+n++++++
MMSYN1_0398 443 KAFHQDLTEQGLNkkLSSELSSYLSLAKtlLPTLSVDKKVIDFLDSKSLKDFLN-NPFLALYKQNFLKEVFQLINQL--SNKEVINNQIIDNV----- 532
***********98899************998999999*****************.**********************..9*************..... PP
TIGR04547 572 lNlktllttpLdklle............kkkedkkqflkglkkkSiteiiddlssdfevdeneklkdlesyginlkdikeLvnkif...inytykdk. 653
+N+++l+t +Ldkll+ k++ d+ qfl+glk++Si++ii++ls++++ ++ +y++nl+++k+L+++if i++++k+k
MMSYN1_0398 533 SNVYNLTTLKLDKLLNyllelikkpspsKTSLDEFQFLYGLKDLSISQIINNLSTFYNKENL-------DYIFNLSNFKNLLEAIFnknITMSFKYKn 623
***************************999****************************9983.......7****************999999999999 PP
TIGR04547 654 .......eegketklnlislllenpkk............................aleiLGitkdknkfkegSlldalsnkffnpnknkklva.kdtl 715
+++ +t+l +++l +++k+ ++++LG++ dk++f+++S+ld + n+f++++k+++++a k+++
MMSYN1_0398 624 qekelktQNNLSTILAILGLNSNYTKDlkieikddknnisqkikqlieqkqygliSVILLGFDADKKQFYKDSILDNIANLFGHNDKDINKEAsKNAI 721
9*****************************************************************************************88878889 PP
TIGR04547 716 qelikvla...kiiknlniakslkdefneeflnqknwkfeftfskknksnqkksiksqtllvkyknkktnaktkYefkysRds.knskFkfkkitK 807
+ lik++ ++++n++++k++kd+f +++l+q+nw++e +++k+n+ n +k ++++++l++++ k++n+++k++++++R+s ++++k+++itK
MMSYN1_0398 722 NILIKSYLeliNWFQNVSLKKYAKDNF-STYLDQNNWSTELIDKKGNIENLSKPLIIDYMLKYKNPKDDNQNWKFKVSITRTSdFEQPWKISEITK 816
99999998*******************.*******************************************************9***********9 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (820 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 468 (0.104278); expected 89.8 (0.02)
Passed bias filter: 106 (0.0236185); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.24
# Mc/sec: 4906.48
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0398 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0399 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0399.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0399/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0399 [L=1740]
Description: efflux ABC transporter, permease protein 2=Generic Efflux
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.017 11.2 0.0 0.037 10.0 0.0 1.4 1 TIGR03434 ADOP: acidobacterial duplicated orphan permease
Domain annotation for each model (and alignments):
>> TIGR03434 ADOP: acidobacterial duplicated orphan permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.0 0.0 8.3e-06 0.037 163 408 .. 503 780 .. 488 791 .. 0.66
Alignments for each domain:
== domain 1 score: 10.0 bits; conditional E-value: 8.3e-06
TIGR03434 163 vGktitlngkpytvvGVapagfa.fpgeeadvwvPlal.......epakeae.............leeresrwlevigRlkpg.vtlaqaqa.elaal 237
+G++i ++g +t+ G a ++ fp++++d+ +P + ++ + +++ ++ +l+++ R ++ +++ ++ +++ +
MMSYN1_0399 503 LGQQIIVDGALLTITGFATDTYSfFPTTDPDFPIPQSElgailyvTR----StindilgatsqsnTNRVSKGYLSFFLRKRQSnASINLFNSyQMNDI 596
78888888888888888888888777777777766555333332222....12222444333333333444444444444332122222221123333 PP
TIGR03434 238 aaql...aeaypkenage.klaveplaeelvg........evrkallvllaavglvLlIACaNvAnLlLARaaaRqrEiavRlALGAsrarlvrqlLt 323
++ + + ++ ++n+ + l+++++ ++++ +++ + l+a+++v lIA + + + +++i + ALG+s ++ L+
MMSYN1_0399 597 SKLYdsiKYQKDQKNKVTtWLNIKDFDHSIFRfnwtiaplAINSYKGATLIAALVVSLIAIIALVICIRKTIYFNAKQIGILKALGSSPIQISISYLA 694
33223224444444444436667777776666877666665555556677788888888887777666666777899********************* PP
TIGR03434 324 EsllLallGgalGlllAlaglrlllallp..aslprlaeisldlrvllfalalslltgllfGlaPalqatrsdlaealkeggrsssg 408
+++ l lG++ l + ++++l+ s+p + +++ ll +l++ l g++ +l+ a+ +t+++la+ l +++ ss+
MMSYN1_0399 695 YVIVIILTSVPLGWITGLSTQSVFVKLFVnyFSIPL-YSFTIEPFSLLISLLIFGLFGVIVSLLSAIIITKKQLADILAVKQNWSSS 780
*************************99773555555.79************************************999987765554 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1740 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 341 (0.0759804); expected 89.8 (0.02)
Passed bias filter: 36 (0.00802139); expected 89.8 (0.02)
Passed Vit filter: 2 (0.000445633); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.25
# Mc/sec: 9994.86
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0399 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0400 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0400.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0400/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0400 [L=183]
Description: DJ-1 family protein 2=Generic Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.5e-45 152.4 0.0 2.8e-45 152.2 0.0 1.0 1 TIGR01383 not_thiJ: DJ-1 family protein
1.6e-25 87.6 0.0 1.9e-25 87.4 0.0 1.0 1 TIGR01382 PfpI: intracellular protease, PfpI family
0.00025 19.0 0.0 0.00039 18.3 0.0 1.3 1 TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, g
0.0012 16.2 0.1 0.0014 16.0 0.1 1.2 1 TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine sy
Domain annotation for each model (and alignments):
>> TIGR01383 not_thiJ: DJ-1 family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 152.2 0.0 2.5e-48 2.8e-45 2 179 .. 4 177 .. 3 178 .. 0.95
Alignments for each domain:
== domain 1 score: 152.2 bits; conditional E-value: 2.5e-48
TIGR01383 2 vlillaeGaEevEavivvdvLrRagikvtvavvsledklavkgsrgvklladksledveeeefDvivLpGGlpGaenlkdsklleellkkqeskgklv 99
+++ l +G+Ee+Eav++ dvL+Ragi v++vs+ d+l+vkg++++ ++a+k ++++ + +D +vLpGG G + l d+++l + + ++++++kl+
MMSYN1_0400 4 IALYLNPGFEEIEAVTACDVLKRAGI--LVDMVSTIDSLEVKGAHNIVIKANKLWKELNINYYDGMVLPGG-SGVTSLFDNQTLIDNILEFNKQNKLI 98
778999******************55..556****************************************.59999********************* PP
TIGR01383 100 AAICaaPivllaaevllgkkkatcypslkekllneeysvekavvvdgkliTsrGpgtaieFalelvelLaGkevaeevak 179
A ICaaP v+ +++ l + k++t yp+++ l +++++ +k +vvd+++iT+ g ++ F+l++ve+L Gke+ ee++k
MMSYN1_0400 99 ASICAAPQVIGQTKLLDN-KTITHYPNCNFYLDKANVVLDKPFVVDNNFITGASAGSSMLFSLAIVEYLLGKEKKEEIYK 177
*************99998.6*********************************************************986 PP
>> TIGR01382 PfpI: intracellular protease, PfpI family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 87.4 0.0 1.7e-28 1.9e-25 2 168 .. 4 166 .. 3 167 .. 0.95
Alignments for each domain:
== domain 1 score: 87.4 bits; conditional E-value: 1.7e-28
TIGR01382 2 llvlaedefedeEllePlkalkeaGheVtvvsgkekgeivkekkgakvtvdatlddvdaeeydalvipGGrapeylrldekvielvrefaekgKpvaa 99
+++ + +fe++E ++ +++lk+aG V++vs+ + e+ + ++ ++ ++ ++++ + yd++v+pGG++ l ++ +i + ef +++K++a+
MMSYN1_0400 4 IALYLNPGFEEIEAVTACDVLKRAGILVDMVSTIDSLEVKG-AHNIVIKANKLWKELNINYYDGMVLPGGSGVTSLFDNQTLIDNILEFNKQNKLIAS 100
67778899************************888877777.******************************************************** PP
TIGR01382 100 IChgpqlLisAdvlrGkkltaypaiaedvknAGaeyvdirevvvvdanlvtakvpadlpafvseilkll 168
IC +pq++ + ++l k++t yp ++ + +A + d + vvd+n++t + + +f +i+++l
MMSYN1_0400 101 ICAAPQVIGQTKLLDNKTITHYPNCNFYLDKANVVL-DKP--FVVDNNFITGASAGSSMLFSLAIVEYL 166
********************************9875.545..9**********************9997 PP
>> TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.3 0.0 3.5e-07 0.00039 11 84 .. 33 109 .. 23 124 .. 0.78
Alignments for each domain:
== domain 1 score: 18.3 bits; conditional E-value: 3.5e-07
TIGR03800 11 vrehikalealgveavvvkrledlde.....idglilPGGesttlskllektglleplreliksglPvfGtcaGlilla 84
+ i++le g+ +v+k ++ +e dg++lPGG t l+++++l++++ e+ k+++ + ca ++
MMSYN1_0400 33 MVSTIDSLEVKGAHNIVIKANKLWKElninyYDGMVLPGGSGVT--SLFDNQTLIDNILEFNKQNKLIASICAAPQVIG 109
55668889999999999988775555444558********8765..8*************************9755444 PP
>> TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.0 0.1 1.2e-06 0.0014 19 111 .. 38 129 .. 21 181 .. 0.77
Alignments for each domain:
== domain 1 score: 16.0 bits; conditional E-value: 1.2e-06
TIGR01737 19 kaleklgveaelv....wyedkeledydavvlpGGFsyGDylRagaiaaaspvlkevkelaekGkpvlGiCnGfqilveagllpG.allknaslrFis 111
+le g++ ++ +++ +++ yd++vlpGG ++++ ++++++++ e+ ++ k + iC q++ + ll+ ++++ + +F
MMSYN1_0400 38 DSLEVKGAHNIVIkankLWKELNINYYDGMVLPGGSG------VTSLFDNQTLIDNILEFNKQNKLIASICAAPQVIGQTKLLDNkTITHYPNCNFYL 129
33344444444446666788899999*********76......5799******************************999999763555555555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (183 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 164 (0.0365419); expected 89.8 (0.02)
Passed bias filter: 118 (0.0262923); expected 89.8 (0.02)
Passed Vit filter: 16 (0.00356506); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1313.98
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0400 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0401 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0401.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0401/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0401 [L=594]
Description: peptidase, C39 family 2=Generic Proteolysis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (594 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 439 (0.0978164); expected 89.8 (0.02)
Passed bias filter: 45 (0.0100267); expected 89.8 (0.02)
Passed Vit filter: 1 (0.000222816); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 4061.95
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0401 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0402 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0402.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0402/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0402 [L=164]
Description: rRNA maturation RNase YbeY 5=Equivalog Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-37 126.4 1.5 1.6e-37 126.0 1.5 1.1 1 TIGR00043 TIGR00043: rRNA maturation RNase YbeY
Domain annotation for each model (and alignments):
>> TIGR00043 TIGR00043: rRNA maturation RNase YbeY
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.0 1.5 3.6e-41 1.6e-37 2 110 .. 39 147 .. 38 148 .. 0.97
Alignments for each domain:
== domain 1 score: 126.0 bits; conditional E-value: 3.6e-41
TIGR00043 2 elsllfvddeeiqelnreyrdkdkpTdVlsFpleeeeekeeeleeevlGdlvislevvkeqakeyghsleeelallvvHgllHllGydheeeeeekeM 99
els++fv+d ++q++n++yr++++ +dV sFp+e++e++ +++ ++lGd++i+l +k++a +y+h+l++e+++l+vHg+lHllGydhe+ ++ek+M
MMSYN1_0402 39 ELSITFVNDLKAQQINQQYRNHSYIADVTSFPVEMTENEIKAIGFRELGDMFINLSEAKRKAIKYNHDLNSEMGFLFVHGFLHLLGYDHEDLNDEKIM 136
89***********************************9888888899*************************************************** PP
TIGR00043 100 eeleeeiLkel 110
++l+++iLk +
MMSYN1_0402 137 FDLQDQILKLN 147
********975 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (164 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 217 (0.0483512); expected 89.8 (0.02)
Passed bias filter: 108 (0.0240642); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1177.56
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0402 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0403 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0403.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0403/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0403 [L=301]
Description: era: GTP-binding protein Era 5=Equivalog Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-79 264.1 17.4 3.5e-79 263.9 17.4 1.0 1 TIGR00436 era: GTP-binding protein Era
1.3e-29 101.5 4.6 1.3e-29 101.5 4.6 1.3 1 TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
6.4e-21 72.8 4.0 1.1e-20 72.0 4.0 1.4 1 TIGR00231 small_GTP: small GTP-binding protein domain
2.7e-20 70.5 2.0 2.7e-20 70.5 2.0 1.4 2 TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation
4.1e-16 57.0 12.8 4.1e-16 57.0 12.8 1.3 1 TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
2.4e-15 54.7 1.7 4.9e-15 53.7 1.7 1.4 1 TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding prote
1.8e-12 45.2 1.5 1.8e-12 45.2 1.5 2.4 3 TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding prote
3.9e-10 37.2 0.9 8e-10 36.2 0.9 1.5 1 TIGR02729 Obg_CgtA: Obg family GTPase CgtA
4.2e-10 36.9 7.9 4.9e-10 36.7 7.9 1.1 1 TIGR00437 feoB: ferrous iron transport protein B
1.8e-08 31.7 1.8 2.6e-08 31.1 1.8 1.2 1 TIGR03156 GTP_HflX: GTP-binding protein HflX
1.7e-07 28.7 2.6 1.7e-07 28.7 2.6 2.9 3 TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
2.2e-05 22.7 5.8 4.7e-05 21.6 2.6 2.5 2 TIGR02528 EutP: ethanolamine utilization protein, EutP
0.00015 19.4 10.5 0.0075 13.8 0.5 2.8 3 TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase
0.00045 17.3 1.0 0.00063 16.8 1.0 1.5 1 TIGR00991 3a0901s02IAP34: GTP-binding protein
0.0021 15.2 4.1 0.0024 15.0 0.0 2.4 3 TIGR00092 TIGR00092: GTP-binding protein YchF
------ inclusion threshold ------
0.11 9.5 0.1 0.11 9.5 0.1 2.4 3 TIGR00750 lao: LAO/AO transport system ATPase
Domain annotation for each model (and alignments):
>> TIGR00436 era: GTP-binding protein Era
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 263.9 17.4 1.2e-81 3.5e-79 1 270 [] 7 279 .. 7 279 .. 0.95
Alignments for each domain:
== domain 1 score: 263.9 bits; conditional E-value: 1.2e-81
TIGR00436 1 gfvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgilte.gasqiifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknke.d 96
gfv+i+GrpnvGKSTLlNkl+g+kisiv +k+qTTrn+i+gilt+ +++qi+fiDtPG+h++k++l ++l+ + k+ ++vd+ilf+ sde ++ d
MMSYN1_0403 7 GFVSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKkDQYQIVFIDTPGVHTSKKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKnD 104
79*****************************************9725789*********************************************99* PP
TIGR00436 97 ellleklqklkapvvlalnkldnkekdkllelidkeaslle.fkeiveisalkgenveelkaiveaklregpf.yypedyvtdqeerFkisEiiREki 192
+ll+++ +l+ +l++ k d +k++l+ + ++ +s ++ f ei+ +s + n+e+l + + ++l+++ + +y+ d +tdq++rF+i EiiRE i
MMSYN1_0403 105 LFLLKQIENLDVFKILVITKADSVTKEQLILKANEWSSYQDqFDEIIITSSITNLNIEKLLELIVNNLSDNDYqFYDDDILTDQSDRFMIKEIIRENI 202
************************99999988888777665166************************99875389********************** PP
TIGR00436 193 lkllkeEiPysvaveieekklnekgslkiaalilVeresQKkiiiGkkgkkikaiGieaRkkleklfdakvflelfVk 270
l +++E+P+svav +e+ ++ne++ ++i +i+Ver+sQK iiiGk+g ki i + +k++++lf+ +++lelfVk
MMSYN1_0403 203 LLKTGQEVPHSVAVLVEHLEQNENE-INISCAIIVERQSQKSIIIGKNGVKISDIRYKSKKQIQALFKKRINLELFVK 279
******************9999887.***************************************************8 PP
>> TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 101.5 4.6 4.5e-32 1.3e-29 3 165 .. 9 177 .. 7 251 .. 0.80
Alignments for each domain:
== domain 1 score: 101.5 bits; conditional E-value: 4.5e-32
TIGR03594 3 vaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkg.kefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDee 99
v+i+GrpNVGKStL+N+l++++ +iv ++p +TR g + k+ ++ +iDT+G+++++++l+k +++ a ++ ++ dvilf+ e + ++D
MMSYN1_0403 9 VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDqYQIVFIDTPGVHTSKKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKNDLF 106
88999999999999999999999999999999999999988755437888999999999999999999999999999999999999999999999999 PP
TIGR03594 100 iaklLrkskkpvilvvNKvdnkkeeae.....aaefyslGlgevlaiSaehgrgikdLldeileelpeeee 165
+ k +++ + ilv+ K+d+ ++e+ ++ y+ ++e++ S+ + +i++Ll+ i+++l++++
MMSYN1_0403 107 LLKQIENLDVFKILVITKADSVTKEQLilkanEWSSYQDQFDEIIITSSITNLNIEKLLELIVNNLSDNDY 177
99999999999999999999987765422211456677789999999999999999999999999988765 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.0 4.0 4e-23 1.1e-20 4 141 .. 7 142 .. 5 170 .. 0.87
Alignments for each domain:
== domain 1 score: 72.0 bits; conditional E-value: 4e-23
TIGR00231 4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaG.qedfdairrlyvreverslevvdivilvldveeglekq 100
+ i+G+++vGKstLln+l+++kisi+ kp++tr+ + + + +y++ ++DT+G + ++++ + ++ + +s ++vd+++++ +e+ k
MMSYN1_0403 7 GFVSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKD-QYQIVFIDTPGvHTSKKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKN 103
5799*************************************877777.9**************************************99999999999 PP
TIGR00231 101 tkeiiheakkkgvpiilvvnKiDlkddlktkvkslfaklna 141
+ + ++ ++ +v ilv++K D ++ k++ ++++++
MMSYN1_0403 104 DLFLLKQIENLDVFKILVITKADSVT--KEQLILKANEWSS 142
9999999999****************..8888888888864 PP
>> TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 70.5 2.0 9.7e-23 2.7e-20 10 171 .. 9 176 .. 3 194 .. 0.88
2 ? -3.5 0.2 2.8 8e+02 119 119 .. 244 244 .. 208 284 .. 0.46
Alignments for each domain:
== domain 1 score: 70.5 bits; conditional E-value: 9.7e-23
TIGR03918 10 ialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldD.egeLGelRvektrevlektdlallvvdaeaeleeleee 106
++++Gr N+GKS+l+N+l+g++++iv + p tT ++ + ++ +v+iDT+G+ + +L + + + + + +d++l++ +++ + + +
MMSYN1_0403 9 VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTPGVHTsKKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKNDLF 106
789******************************************************974789*********************************** PP
TIGR03918 107 lleelkekkipvivvlnkidlkeeeke.....keklekkkeeevvlvsakekegieelkealiellpeea 171
ll+++++ ++ i+v++k+d++++e+ + ++ + + +e++++s+ ++ +ie+l e ++++l+++
MMSYN1_0403 107 LLKQIENLDVFKILVITKADSVTKEQLilkanEWSSYQDQFDEIIITSSITNLNIEKLLELIVNNLSDND 176
*********************999876654322233455667889999*****************98763 PP
== domain 2 score: -3.5 bits; conditional E-value: 2.8
TIGR03918 119 i 119
i
MMSYN1_0403 244 I 244
1 PP
>> TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 57.0 12.8 1.5e-18 4.1e-16 212 423 .. 9 229 .. 2 245 .. 0.80
Alignments for each domain:
== domain 1 score: 57.0 bits; conditional E-value: 1.5e-18
TIGR00450 212 laivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedlel.eGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd.e 307
++i+G++NvGKS LlN l+ + +iV++ + ttR+ + + l + +++ +Dt G+ ++++++k +lk+ k+ d++l++ + k+d +
MMSYN1_0403 9 VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKkDQYQIVFIDTPGVHTSKKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKNDlF 106
89*************************************997526799*************************************9999999888879 PP
TIGR00450 308 liitlkkkkkdlllvlNKiDLa.......eleilkselkltvsllsakqlkikelvdlltekinalyskekdeldlalisssealillekaiaeleql 398
l+++ ++ + +lv+ K+D + + ++ s+ +++ + + ++++ll +n+l + + d+ +++++ +++++i+e l
MMSYN1_0403 107 LLKQIENLDVFKILVITKADSVtkeqlilKANEWSSYQDQFDEIIITSSITNLNIEKLLELIVNNLSDNDYQFYDDDILTDQSDRFMIKEIIRENILL 204
9999999999999*******887766656444444444444455566666666666666666666666655556777787877778999999887677 PP
TIGR00450 399 leklekqlfldllvvdlreaiealg 423
++ +e + +lv +l + ++++
MMSYN1_0403 205 KTGQEVPHSVAVLVEHLEQNENEIN 229
7777777799999999999888886 PP
>> TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 53.7 1.7 1.7e-17 4.9e-15 21 185 .. 9 168 .. 2 169 .. 0.84
Alignments for each domain:
== domain 1 score: 53.7 bits; conditional E-value: 1.7e-17
TIGR03598 21 iafaGrSNvGKSsliNaLtnrkklartSktPGrTql.inffev.ne..elrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDirhel 114
+ ++Gr NvGKS+l+N+L+++k ++ + ++P T++ i ++ +++++D PG ++sk++ +k+ + ++ L++++++ +++l + +
MMSYN1_0403 9 VSIIGRPNVGKSTLLNKLIGEK-ISIVTNKPQTTRNnIRGILTkKDqyQIVFIDTPGV---HTSKKQLDKFLN--TSALKSTKDVDVILFLAPSDEVI 100
789*****************99.9*******99986243333332235889******5...444444444443..4579******************* PP
TIGR03598 115 kelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelkael 185
++Dl ll+ +++ ++ ++v+tKaD ++k++l +++++++ ++ e++++Ss ++ +ie+l + +
MMSYN1_0403 101 GKNDLFLLKQIENLDVFKILVITKADSVTKEQLILKANEWSSYQDQF---DEIIITSSITNLNIEKLLELI 168
**********************************9999999976666...489*************98866 PP
>> TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.2 1.5 6.5e-15 1.8e-12 121 177 .. 9 69 .. 4 88 .. 0.83
2 ? 2.6 0.7 0.059 17 51 106 .. 118 176 .. 79 197 .. 0.74
3 ? -2.8 0.1 2.7 7.6e+02 65 65 .. 260 260 .. 216 295 .. 0.58
Alignments for each domain:
== domain 1 score: 45.2 bits; conditional E-value: 6.5e-15
TIGR03596 121 alvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklsk....eleLlDtPGilwpk 177
+ ++G PNvGKStl+N+l+++k+ v nkp T+++ + l k ++ ++DtPG+ +k
MMSYN1_0403 9 VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKkdqyQIVFIDTPGVHTSK 69
569*******************************98654332213447999******8776 PP
== domain 2 score: 2.6 bits; conditional E-value: 0.059
TIGR03596 51 rlivlnkaDladpekt....kkwlkyfeekgkkalavnakkkkkvkkilkaikkllkekk 106
+++v++kaD + +e+ ++w + ++++ +++++++ ++ +++k+l++i + l++++
MMSYN1_0403 118 KILVITKADSVTKEQLilkaNEWSS-YQDQFDEIIITSSITNLNIEKLLELIVNNLSDND 176
79999****9998864222256654.5556678999999999999999998877666554 PP
== domain 3 score: -2.8 bits; conditional E-value: 2.7
TIGR03596 65 k 65
MMSYN1_0403 260 S 260
1 PP
>> TIGR02729 Obg_CgtA: Obg family GTPase CgtA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.2 0.9 2.9e-12 8e-10 160 327 .. 9 171 .. 7 173 .. 0.81
Alignments for each domain:
== domain 1 score: 36.2 bits; conditional E-value: 2.9e-12
TIGR02729 160 vglvGlpnaGkStllsavsaakpk.iadYpFtTlvPnLGvveveeeksfvlaDiPgliegase.gagLGleFLkHiertrvllhlidlseedekdpve 255
v+++G pn+GkStll+++ k +++ p tT + G+++ +++ ++v+ D Pg+ ++ + L ++ Lk + v+l+l +e k+ +
MMSYN1_0403 9 VSIIGRPNVGKSTLLNKLIGEKISiVTNKPQTTRNNIRGILTKKDQYQIVFIDTPGVHTSKKQlDKFLNTSALKSTKDVDVILFLAPSDEVIGKNDLF 106
789*************9877776516889999999999*******************8766553889*****************99888884444444 PP
TIGR02729 256 dleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeel..ekkvlaisaltkegleellkkllel 327
l++ +++ + +++v++k+d +++e+l +++e ++ + ++++ +s++t+ ++e+ll+ +++
MMSYN1_0403 107 LLKQ----IENL-----DVFKILVITKADSVTKEQLILKANEWSSYQdqFDEIIITSSITNLNIEKLLELIVNN 171
4444....4333.....335689999***999988888887777666446899999************998876 PP
>> TIGR00437 feoB: ferrous iron transport protein B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.7 7.9 1.8e-12 4.9e-10 1 193 [. 13 232 .. 13 291 .. 0.65
Alignments for each domain:
== domain 1 score: 36.7 bits; conditional E-value: 1.8e-12
TIGR00437 1 GnpNvGKstlfnaLtgsnqk.vgNwpGvTVekkegklelkge.dieivDlPGiYsLttvsldEkvardyllnekadLvvnvvdasnl..eRnLyltlQ 94
G pNvGKstl+n+L g++ + v N p +T + +g l+ k++ +i ++D+PG++ ++ + + + +++d+++ + ++ + +L+l Q
MMSYN1_0403 13 GRPNVGKSTLLNKLIGEKISiVTNKPQTTRNNIRGILTKKDQyQIVFIDTPGVHTSKKQLDKFLNTSALKSTKDVDVILFLAPSDEVigKNDLFLLKQ 110
89**************9975279**************9988659**********976665444455666677899*****998876533456****** PP
TIGR00437 95 llelgiplilalNlvdeAekkgirideekLeerLGv..pvvplsatkgrgieelkkaide........................ekaiklvekkkrai 166
+ +l++ il++ ++d k+ + + +++ + ++ +s++ +ie+l + i + + + +++ ++
MMSYN1_0403 111 IENLDVFKILVITKADSVTKEQLILKANEWSSYQDQfdEIIITSSITNLNIEKLLELIVNnlsdndyqfydddiltdqsdrfmiK----EIIRENILL 204
*********************9999988877655432278999999999999999999966666666665555555544432221....111222222 PP
TIGR00437 167 eilkea.eslaevkeklkelkqklkkgl 193
+ +e+ +s+a ++e+l++++++++
MMSYN1_0403 205 KTGQEVpHSVAVLVEHLEQNENEINISC 232
2222210122222222333333332222 PP
>> TIGR03156 GTP_HflX: GTP-binding protein HflX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.1 1.8 9.3e-11 2.6e-08 192 350 .. 9 171 .. 3 172 .. 0.73
Alignments for each domain:
== domain 1 score: 31.1 bits; conditional E-value: 9.3e-11
TIGR03156 192 valvGYTNaGKstllnaltkaev.laedklFATLdpttrrlklpeeeevlltDTVGFirkLPheLveaF..kaTLeevaeadlllhvvDasdeeaeeq 286
v+++G N GKstlln+l+++++ ++ +k +T + l+ +++ ++++ DT G + ++L + F + L+ +++ d++l + sde +
MMSYN1_0403 9 VSIIGRPNVGKSTLLNKLIGEKIsIVTNKPQTTRNNIRGILTKKDQYQIVFIDTPGV-HTSKKQL-DKFlnTSALKSTKDVDVILFLAP-SDEVIG-- 101
9******************9987255666666655555556667788*********4.4445555.66623477**********98853.333333.. PP
TIGR03156 287 ieaveevLeelgaeeipvllvlNkidkle.......eeeleeleekkeeavlvsAkkgegleeLleaieea 350
++ +L++++ ++ ++lv+ k+d ++ +e ++ +++ +e ++ s+ ++ ++e+Lle i ++
MMSYN1_0403 102 -KNDLFLLKQIENLDVFKILVITKADSVTkeqlilkANEWSSYQDQFDEIIITSSITNLNIEKLLELIVNN 171
.333468999999999************9444443333444445555779999*************99775 PP
>> TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.7 2.6 6.1e-10 1.7e-07 158 232 .. 9 83 .. 2 114 .. 0.68
2 ? 2.3 2.0 0.063 18 95 157 .. 119 176 .. 99 181 .. 0.78
3 ? 0.4 0.3 0.24 68 102 166 .. 183 251 .. 179 257 .. 0.67
Alignments for each domain:
== domain 1 score: 28.7 bits; conditional E-value: 6.1e-10
TIGR03597 158 vyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTld.lieipl..dke.svllDtpGiinee.qianllskkdlkk 232
v ++G NVGKS+l+Nkl+ g+k i+t k p TT + ++ i d++ v +DtpG+ +++ q+ ++l++ lk+
MMSYN1_0403 9 VSIIGRPNVGKSTLLNKLI----GEKISIVTNK-PQTTRNnIRGILTkkDQYqIVFIDTPGVHTSKkQLDKFLNTSALKS 83
569****************....4455566666.55665515455442233314578*****987615556666666554 PP
== domain 2 score: 2.3 bits; conditional E-value: 0.063
TIGR03597 95 llvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellelikkarekkd 157
+lv+ K d + k++ k +ew + ++ +i+++s+ ++ ++++lleli ++ +++d
MMSYN1_0403 119 ILVITKADSVTKEQLILKANEWSSY---QDQFD--EIIITSSITNLNIEKLLELIVNNLSDND 176
7888999999888888888888443...33444..9******************988766554 PP
== domain 3 score: 0.4 bits; conditional E-value: 0.24
TIGR03597 102 dllpksvklekikewlkkeak.eeglk.pvdillvsak..kkkglkellelikkarekkdvyvvGvtNV 166
d+l +++ + ike +++++ ++g + p+ +++ + ++++ ++ +i +r+ ++++++G+ V
MMSYN1_0403 183 DILTDQSDRFMIKEIIRENILlKTGQEvPHSVAVLVEHleQNENEINISCAIIVERQSQKSIIIGKNGV 251
88889999999999998876414444455666555444004444445556677888889999*999766 PP
>> TIGR02528 EutP: ethanolamine utilization protein, EutP
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.6 2.6 1.7e-07 4.7e-05 4 139 .. 10 167 .. 7 170 .. 0.72
2 ? -2.0 0.1 3.2 9e+02 64 91 .. 213 241 .. 201 272 .. 0.58
Alignments for each domain:
== domain 1 score: 21.6 bits; conditional E-value: 1.7e-07
TIGR02528 4 mliGsvgcGkttLtqaLkgeeik..ykktqav............eykdkaiDtPGeylenrryYsaLlvta....adadvivlvqsatd...eeslls 80
+iG+ + Gk tL ++L ge+i k q +y+ iDtPG + ++++ + L ++a d+dvi ++ ++ +++l+
MMSYN1_0403 10 SIIGRPNVGKSTLLNKLIGEKISivTNKPQTTrnnirgiltkkdQYQIVFIDTPGVHTSKKQLDKFLNTSAlkstKDVDVILFLAPSDEvigKNDLFL 107
689****************9875225676654222222233222455578**********9998777665422228******9986655221666666 PP
TIGR02528 81 pgfasifakeviglvtkidlaeadkeierakelLe.eagaekiFeissvdekgleelvdy 139
+ + + +i ++tk+d +++ i +a+e+ + + ++i ++ss + +e+l++
MMSYN1_0403 108 LKQIENLDVFKILVITKADSVTKEQLILKANEWSSyQDQFDEIIITSSITNLNIEKLLEL 167
6666666667899*******999*****99999762556789999999999999999876 PP
== domain 2 score: -2.0 bits; conditional E-value: 3.2
TIGR02528 64 dvivlvqsatdeesllspgfasifak.ev 91
+v vlv++ +++e+++ a i+ + +
MMSYN1_0403 213 SVAVLVEHLEQNENEINISCAIIVERqSQ 241
46666766666666666665555555322 PP
>> TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.8 0.5 2.7e-05 0.0075 119 185 .. 3 67 .. 1 84 [. 0.72
2 ! 10.3 2.0 0.0003 0.085 62 124 .. 108 172 .. 89 174 .. 0.87
3 ? -1.4 0.0 1.1 3.2e+02 121 185 .. 239 253 .. 214 277 .. 0.63
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 2.7e-05
TIGR00157 119 klkkrisvfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhl.qgGliiDtPGfne 185
++k+ + +++G+ VGKS L+N+l +e v+ +k + ++ + + + iDtPG++
MMSYN1_0403 3 NFKSGFVSIIGRPNVGKSTLLNKLIGEKISIVT---NKPQTTRNNIRGILTKKDqYQIVFIDTPGVHT 67
688899999***************988766666...55555555554443333313345689999875 PP
== domain 2 score: 10.3 bits; conditional E-value: 0.0003
TIGR00157 62 Lvvaeakniepiivlnkkdlleeedae..keqleelknlgYkvllvsvkneegleelkeklkkri 124
L ++e ++ +i+v++k d +++e+ + + +++ +++++s+ ++ ++e+l e + +++
MMSYN1_0403 108 LKQIENLDVFKILVITKADSVTKEQLIlkANEWSSYQDQFDEIIITSSITNLNIEKLLELIVNNL 172
5689999*****************987655667788888889***************99988776 PP
== domain 3 score: -1.4 bits; conditional E-value: 1.1
TIGR00157 121 kkrisvfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhlqgGliiDtPGfne 185
+++ s+++G+ GV
MMSYN1_0403 239 QSQKSIIIGKNGVK--------------------------------------------------I 253
44455555555553..................................................2 PP
>> TIGR00991 3a0901s02IAP34: GTP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.8 1.0 2.3e-06 0.00063 41 125 .. 9 93 .. 2 235 .. 0.76
Alignments for each domain:
== domain 1 score: 16.8 bits; conditional E-value: 2.3e-06
TIGR00991 41 ilvmgkggvgksstvnsiigervaavsaf.qs..eglrpvlvsrtragftlniidtpglieggyindqavniikrflldktidvllyv 125
+ ++g+ vgks+ +n +ige+++ v++ q+ + +r +l + + + idtpg+ d+ +n + k +dv+l++
MMSYN1_0403 9 VSIIGRPNVGKSTLLNKLIGEKISIVTNKpQTtrNNIRGILT--KKDQYQIVFIDTPGVHTSKKQLDKFLNT-SALKSTKDVDVILFL 93
6789******************98876531221134455554..45679999******98877666666664.334445666777665 PP
>> TIGR00092 TIGR00092: GTP-binding protein YchF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.0 8.7e-06 0.0024 6 41 .. 10 45 .. 2 56 .. 0.80
2 ? 0.2 0.7 0.27 77 203 224 .. 167 188 .. 72 203 .. 0.67
3 ? 0.4 0.5 0.24 66 203 229 .. 167 193 .. 151 248 .. 0.69
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 8.7e-06
TIGR00092 6 GivGLpnvGkstlfqaitkaklgeaanyPfatiepn 41
i+G pnvGkstl + ++ k++ + n P +t +
MMSYN1_0403 10 SIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNI 45
388*******************99999999887655 PP
== domain 2 score: 0.2 bits; conditional E-value: 0.27
TIGR00092 203 livanvseddlvnkenkllekv 224
liv n+s++d++ +++ l+ +
MMSYN1_0403 167 LIVNNLSDNDYQFYDDDILTDQ 188
5566666666666665555544 PP
== domain 3 score: 0.4 bits; conditional E-value: 0.24
TIGR00092 203 livanvseddlvnkenkllekvkeiva 229
liv n+s++d++ +++ l+ + + +
MMSYN1_0403 167 LIVNNLSDNDYQFYDDDILTDQSDRFM 193
788899999999888888877666543 PP
>> TIGR00750 lao: LAO/AO transport system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.5 0.1 0.00041 0.11 36 57 .. 8 29 .. 4 43 .. 0.85
2 ? 0.5 0.1 0.23 63 171 199 .. 114 142 .. 39 237 .. 0.72
3 ? -3.4 0.1 3.3 9.3e+02 249 282 .. 259 292 .. 252 298 .. 0.61
Alignments for each domain:
== domain 1 score: 9.5 bits; conditional E-value: 0.00041
TIGR00750 36 vvGltGvPGaGkstlvekliee 57
v + G P +Gkstl++kli e
MMSYN1_0403 8 FVSIIGRPNVGKSTLLNKLIGE 29
58899**************965 PP
== domain 2 score: 0.5 bits; conditional E-value: 0.23
TIGR00750 171 leiaDivvvnkaDkeeaekerlarlelsl 199
l++ i+v+ kaD +e+ l + e+s+
MMSYN1_0403 114 LDVFKILVITKADSVTKEQLILKANEWSS 142
45666777777777666644444444433 PP
== domain 3 score: -3.4 bits; conditional E-value: 3.3
TIGR00750 249 krrersveelkklveeevlkkvkakeevyrdlle 282
k +++++ + kk ++ e+ kv+++ + l++
MMSYN1_0403 259 KSKKQIQALFKKRINLELFVKVQENWRNSPSLIK 292
5566666666666666666666666655555554 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (301 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 364 (0.0811052); expected 89.8 (0.02)
Passed bias filter: 120 (0.026738); expected 89.8 (0.02)
Passed Vit filter: 34 (0.00757576); expected 4.5 (0.001)
Passed Fwd filter: 16 (0.00356506); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 16 [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.25
# Mc/sec: 1729.00
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0403 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0404 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0404.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0404/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0404 [L=249]
Description: reco: DNA repair protein RecO 5=Equivalog DNA repair
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-70 234.2 18.1 3.6e-70 234.1 18.1 1.0 1 TIGR00613 reco: DNA repair protein RecO
Domain annotation for each model (and alignments):
>> TIGR00613 reco: DNA repair protein RecO
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 234.1 18.1 8e-74 3.6e-70 2 238 .. 4 244 .. 3 245 .. 0.98
Alignments for each domain:
== domain 1 score: 234.1 bits; conditional E-value: 8e-74
TIGR00613 2 kieGivLkskdygEtdkiitlfteeyGkvsfvakgarksksrlkavlqpfslgdfelykr...selstlkkveliksfeeiksdlallayasyiaell 96
+ +GivL+s d++++dkiit++++ yGk+s+v+ g++k ks++k+ ++++s+++fe++k+ +ls+lk+ eli+sf++i++d++l++ya++i++l+
MMSYN1_0404 4 TLKGIVLNSFDFQDYDKIITIYSNLYGKISLVCLGVNKIKSKNKYGINYLSYSNFEIFKSknkFNLSKLKRSELINSFNHISTDFNLYLYANIITSLV 101
679********************************************************998999********************************* PP
TIGR00613 97 drlleekepnpklfelllktLelleek.tnaelllvlfelkLLkelGyaldlskCavCgs.kedliyfSmkyggalckeceekdaiplkekllrllrl 192
+l+e+ +n++l+++l+ +++ +++k + +++vlf++++Lk++G+++dlskC++C+s ++++i++S++++++ ck c+++d+i+++++l++++++
MMSYN1_0404 102 -LSLDEQIKNYNLYKTLKLSISIINNKpDLGLKVCVLFMFYFLKIIGNQIDLSKCGFCNSkINPIIAISFTNYCSSCKFCYFDDCILIDNQLSNFINS 198
.99************************99999****************************9999********************************** PP
TIGR00613 193 llkldlekllsielkqeiaeelkrildelyeeylgkplkSkkfldq 238
++k+d+ ++ls+e+++++++ l+r++ ++y++++g++++S+++l++
MMSYN1_0404 199 IFKNDFITNLSQEISTNNLNILTRFILNYYQDIVGTYTTSMYLLST 244
*******************************************987 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (249 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 222 (0.0494652); expected 89.8 (0.02)
Passed bias filter: 87 (0.019385); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1702.74
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0404 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0405 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0405.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0405/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0405 [L=456]
Description: glyRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-157 522.4 7.1 1.3e-91 305.8 1.0 3.0 3 TIGR00389 glyS_dimeric: glycine--tRNA ligase
1e-12 45.7 1.6 2.1e-07 28.2 0.0 3.2 3 TIGR00409 proS_fam_II: proline--tRNA ligase
7.7e-12 42.8 0.5 2.9e-06 24.4 0.0 3.4 3 TIGR00418 thrS: threonine--tRNA ligase
1.1e-08 32.4 0.2 4.3e-07 27.1 0.1 3.1 2 TIGR00408 proS_fam_I: proline--tRNA ligase
1.5e-06 25.4 0.4 0.006 13.6 0.0 2.3 2 TIGR00442 hisS: histidine--tRNA ligase
Domain annotation for each model (and alignments):
>> TIGR00389 glyS_dimeric: glycine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 305.8 1.0 1.5e-94 1.3e-91 3 235 .. 5 240 .. 3 246 .. 0.95
2 ! 76.5 0.1 4.3e-25 3.9e-22 267 350 .. 233 317 .. 230 320 .. 0.92
3 ! 152.2 0.1 5.1e-48 4.6e-45 421 563 .. 312 453 .. 309 455 .. 0.96
Alignments for each domain:
== domain 1 score: 305.8 bits; conditional E-value: 1.5e-94
TIGR00389 3 reklvsllkrrgflfqsfeiYgGlaglvDygPlGaelknnikkawrkffileee.vlevdspiltpeevlkasGHvdkFtDalveckkckevfRaDhl 99
ek++s lk++gf+fq +eiYgGla+++DygPlG+e+kn++kk w++ff++++ + +ds+i+++ +v+kasGH+d F+D+l++ck+ck+++RaD+l
MMSYN1_0405 5 IEKMISHLKNQGFVFQGSEIYGGLANSWDYGPLGCEVKNKLKKVWWDFFVKKNPlNVGLDSSIILNSKVWKASGHIDGFNDPLIDCKNCKSRWRADKL 102
6899************************************************99889***************************************** PP
TIGR00389 100 veevlekeleg.lsgkelkellekydincPkckgenleevrsfnLlFeteiGvsg..kkkgylRPEtAqGiFinFkkllefkreklPFgvaqiGksfR 194
+ee+ + ++g +++ +l++ +++++i c kc+ + ++++r+f L+F+t+ Gv + ++ +ylRPEtAqGiFinFk++ ++ r+klPFg+ qiGksfR
MMSYN1_0405 103 IEEFDSSINTGiMTSAQLEDYIKQNNILCKKCQKKDFTQIRKFALMFKTNQGVLEddSSIVYLRPETAQGIFINFKNVQRSMRKKLPFGIGQIGKSFR 200
***98776666267889************************************9987899************************************** PP
TIGR00389 195 nEisprqgllRvrEFeqaEiefFvdPeekshekFeevkdek 235
nEi+p+++++R+rEFeq+E+efF dP +++ ++F+++ d++
MMSYN1_0405 201 NEITPGNFIFRTREFEQMELEFFFDP-NDQRDWFKYWLDQI 240
**************************.89999****99886 PP
== domain 2 score: 76.5 bits; conditional E-value: 4.3e-25
TIGR00389 267 layfiarvkrFlle.igidedklrfrqhlknelAHYAkdcwDaelktsyGwiEvvGiadRtdyDLkqHskkskkelsvfekldep 350
+ y++ +++ Fl++ i +d+++ + r+ lk elAHYA ++ D+e+++++Gw E++Gi R+d+DLk+H++ sk++l+v +++ ++
MMSYN1_0405 233 FKYWLDQIELFLTKkICLDKSNYKIRENLKDELAHYALKTSDIEFNFPFGWGELWGISHRSDFDLKVHQNLSKEDLTVLKEETNQ 317
579*********86277*************************************************************9988654 PP
== domain 3 score: 152.2 bits; conditional E-value: 5.1e-48
TIGR00389 421 kvvkvekyiPsviEpsfGidRiiyallehsyqkev..deeeRevlrlkpkvaPikvlvlplvnkeelkeiakeiakaLrkeeiiikyddsgsiGkrYa 516
k+++ +k++ +viEps+G++R+++a++ ++y++e+ ++++R+vl+l+ ++aP++v+++pl+++ l++ a++++ L ++ + + yd++g iGkrY+
MMSYN1_0405 312 KEETNQKVLANVIEPSVGVERLMLAIFWQAYTEEQleENNSRTVLKLPYNLAPYQVAITPLSKQ--LNQNANQLFLDLLND-FDAVYDETGNIGKRYR 406
67899****************************9998899**********************99..************998.**************** PP
TIGR00389 517 raDeiGtpfavtiDfetleDetvtlReRdslkqvRvkieelvsalkk 563
r+D+iGtpf +t Df+tleD+ vt+R Rd++kq R+ i++l+++l++
MMSYN1_0405 407 RQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILISQLKDFLNS 453
*****************************************999875 PP
>> TIGR00409 proS_fam_II: proline--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3.2 0.0 0.0084 7.5 40 101 .. 32 95 .. 4 145 .. 0.82
2 ! 12.1 0.2 1.7e-05 0.015 125 155 .. 185 215 .. 167 233 .. 0.87
3 ! 28.2 0.0 2.3e-10 2.1e-07 446 567 .. 328 453 .. 307 454 .. 0.79
Alignments for each domain:
== domain 1 score: 3.2 bits; conditional E-value: 0.0084
TIGR00409 40 ynylPlalrvlekvenivreemnkagaievll..palqsaelWqesgRwdkygeellrlkDrke 101
++y Pl++ v +k++++ + k++ +v l + + ++++W++sg d + + l+ k+ k
MMSYN1_0405 32 WDYGPLGCEVKNKLKKVWWDFFVKKNPLNVGLdsSIILNSKVWKASGHIDGFNDPLIDCKNCKS 95
6799****************99999999998832446779**********99999988887665 PP
== domain 2 score: 12.1 bits; conditional E-value: 1.7e-05
TIGR00409 125 YkqlPvnlYqiqtKfRDEiRPRfGllRgREF 155
k+lP + qi + fR+Ei P ++R+REF
MMSYN1_0405 185 RKKLPFGIGQIGKSFRNEITPGNFIFRTREF 215
379***************************9 PP
== domain 3 score: 28.2 bits; conditional E-value: 2.3e-10
TIGR00409 446 iGvsRlvsaiv.........EqkrDekGiiWpkaiAPyevvivvsnvkdeeqkklaeevyselkakgvdvllDdrneraGvkfrdseliGiplavvvG 534
+Gv Rl+ ai E ++ + + p ++APy+v+i + + ++ a++++ +l+ ++ d+++D+ +G + r ++iG p++++
MMSYN1_0405 328 VGVERLMLAIFwqayteeqlEENNSRTVLKLPYNLAPYQVAITPLSKQL---NQNANQLFLDLL-NDFDAVYDET-GNIGKRYRRQDAIGTPFVITYD 420
677777766651111110002233334467899*********9987655...88999*****98.579****986.579******************* PP
TIGR00409 535 kksldnkeiEvkkrrngekqlikkaelkevlek 567
++l+++++ +++r + +++ i +++lk++l+
MMSYN1_0405 421 FQTLEDQKVTIRYRDTMKQERILISQLKDFLNS 453
*************************99999876 PP
>> TIGR00418 thrS: threonine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.3 0.0 0.017 15 200 248 .. 38 88 .. 27 98 .. 0.69
2 ! 12.3 0.2 1.5e-05 0.014 230 323 .. 136 229 .. 111 268 .. 0.81
3 ! 24.4 0.0 3.2e-09 2.9e-06 463 563 .. 355 453 .. 307 455 .. 0.86
Alignments for each domain:
== domain 1 score: 2.3 bits; conditional E-value: 0.017
TIGR00418 200 Galirklledfvrekllkrgyeev..etPiladlelweisghldkykermf 248
G +++ l++ + + +k++ +v + i+++++ w+ sgh+d +++
MMSYN1_0405 38 GCEVKNKLKKVWWDFFVKKNPLNVglDSSIILNSKVWKASGHIDGFNDPLI 88
555555555555444444444443225789****************99765 PP
== domain 2 score: 12.3 bits; conditional E-value: 1.5e-05
TIGR00418 230 dlelweisghldkykermfrfkeeeekelvlkpmnCpghilifksslrsyr.dLPlrlaelgvvhRyEks.GeLvGLkRvRgftldDaHifct.edQ 323
+++ +i++++ +k ++ e++++ ++l+p + g + fk+ +rs r +LP+ + ++g ++R+E G+ + R R+f + f dQ
MMSYN1_0405 136 KKDFTQIRKFALMFKTNQGV-LEDDSSIVYLRPETAQGIFINFKNVQRSMRkKLPFGIGQIGKSFRNEITpGNF--IFRTREFEQMELEFFFDpNDQ 229
56677899999999999995.5556799*****************99998737***************762555..678888888877777773444 PP
== domain 3 score: 24.4 bits; conditional E-value: 3.2e-09
TIGR00418 463 agelPlwLaPvQvrvipvsekhldyakkvaeklkkegirvdvddrneklgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleellek 560
+lP LaP Qv++ p s++ + a+++ +l + ++ + d+++ ++gk+ R + + p+v+ + +e+++vt+R r+ k+e++ + +l +
MMSYN1_0405 355 VLKLPYNLAPYQVAITPLSKQLNQNANQLFLDLLN-DFDAVYDETG-NIGKRYRRQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILISQLKDF 450
3456****************************985.7888777766.69****************************************999998887 PP
TIGR00418 561 vrk 563
+++
MMSYN1_0405 451 LNS 453
766 PP
>> TIGR00408 proS_fam_I: proline--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.4 0.0 0.061 55 42 86 .. 43 88 .. 33 125 .. 0.73
2 ! 27.1 0.1 4.8e-10 4.3e-07 100 377 .. 163 451 .. 129 456 .] 0.76
Alignments for each domain:
== domain 1 score: 0.4 bits; conditional E-value: 0.061
TIGR00408 42 ekiqkllddkldeieveevyfP.llipeselekEkeHikGFepEvy 86
+k+ k++ d + +++ +v + +i +s++ k Hi+GF++ +
MMSYN1_0405 43 NKLKKVWWDFFVKKNPLNVGLDsSIILNSKVWKASGHIDGFNDPLI 88
55555555555555555555531467888999999*******9876 PP
== domain 2 score: 27.1 bits; conditional E-value: 4.8e-10
TIGR00408 100 lalRP.tsEtvlynlykkwvksyrdLPlklnqivnvfRyEkkhtrPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiPv..lvgrk 194
+ lRP t+ ++ n+ + + + LP+ + qi + fR E + RtrEf E + + ++ + + ld + ++++++++ ++r
MMSYN1_0405 163 VYLRPeTAQGIFINFKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFRTREFEQMEL-EFFFDPNDQRDWFKYWLDQIELFLTKKICLDKsnYKIRE 259
4599945555555655566666789*****************778888*****98886.57888999999999999*9999*******9761155666 PP
TIGR00408 195 sekekFaG.aeytvaieaimpdgralqiatsH......dLgqnFaktFeikfenkegekayay..qtsyGlstRvigaliliHsDdk........GLv 275
k+ a a t ie +p g + + sH ++ qn +k ++++++k++a + s+G+ +++ ++++ L
MMSYN1_0405 260 NLKDELAHyALKTSDIEFNFPFGWGELWGISHrsdfdlKVHQNLSKEDLTVLKEETNQKVLANviEPSVGVERLMLAIFWQAYTEEQleennsrtVLK 357
667777753678999********9999999995544333689****9888889999999998633679**9777777777777665322222222688 PP
TIGR00408 276 lPpkvapiqvvvipiifkkkenkkvlelarkveekLkkleiRvelderdnrpGkkfskaElkGiPlrlevgpkdieknavvvlrRdekkKvevsldel 373
lP+++ap qv + p k+ n +++ + + L+ + ++ de + Gk++ + + G P+ + + + +e ++v++ Rd++k+ + + +l
MMSYN1_0405 358 LPYNLAPYQVAITP--LSKQLN---QNANQLFLDLLNDF--DAVYDE-TGNIGKRYRRQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILISQL 447
9*************..444432...34455566677666..444444.3489*************************************999999998 PP
TIGR00408 374 eekv 377
++ +
MMSYN1_0405 448 KDFL 451
8655 PP
>> TIGR00442 hisS: histidine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.9 0.2 8.6e-05 0.077 68 129 .. 158 224 .. 112 237 .. 0.76
2 ! 13.6 0.0 6.7e-06 0.006 302 404 .. 327 442 .. 321 444 .. 0.63
Alignments for each domain:
== domain 1 score: 9.9 bits; conditional E-value: 8.6e-05
TIGR00442 68 kggrslaLRpelTapvvRav..venklelkkpfklyyigpvFRyErpqkG...RyRqFhQldvevvG 129
+++ + LRpe ++ + v++++++k pf + +ig+ FR+E R R+F Q++ e++
MMSYN1_0405 158 DDSSIVYLRPETAQGIFINFknVQRSMRKKLPFGIGQIGKSFRNEITPGNfifRTREFEQMELEFFF 224
33456779***99998877622445555555**************64432466***********985 PP
== domain 2 score: 13.6 bits; conditional E-value: 6.7e-06
TIGR00442 302 aiGieRlllll..............eeegllee.....ekkkadvlvvaldeeaeaealklaeklrkagirvevdlegkklkkqlkyadkkgakfvvi 380
++G+eRl+l++ + + + + +v +++l+++ +++a +l +l + + + v+ e+ +++k++++ d+ g++fv++
MMSYN1_0405 327 SVGVERLMLAIfwqayteeqleennS----RTVlklpyNLAPYQVAITPLSKQLNQNANQLFLDLLND-FDA-VYDETGNIGKRYRRQDAIGTPFVIT 418
78999998888555443322211110....00011112333344444445555555555555444433.333.3345579****************** PP
TIGR00442 381 lgedelekgkvtlkdletgeqeev 404
+ + le++kvt++ +t +qe++
MMSYN1_0405 419 YDFQTLEDQKVTIRYRDTMKQERI 442
***************999999876 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (456 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 150 (0.0334225); expected 89.8 (0.02)
Passed bias filter: 93 (0.0207219); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 5 (0.00111408); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.22
# Mc/sec: 2976.53
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0405 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0406 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0406.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0406/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0406 [L=612]
Description: dnaG 5=Equivalog DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.3e-119 396.0 11.7 4.3e-119 396.0 11.7 2.0 2 TIGR01391 dnaG: DNA primase
Domain annotation for each model (and alignments):
>> TIGR01391 dnaG: DNA primase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 396.0 11.7 9.6e-123 4.3e-119 2 412 .. 4 410 .. 3 412 .. 0.97
2 ? -0.3 0.8 0.02 88 92 144 .. 424 477 .. 414 522 .. 0.82
Alignments for each domain:
== domain 1 score: 396.0 bits; conditional E-value: 9.6e-123
TIGR01391 2 iteevieelkekvdivdvvseyvkLkkkGknyvalCPFhkektpSfsVspekqfyhCFgCgagGdaikFlmeieklsfaeaveelakkagldlelekk 99
i++e i+e+ ++v ivdv+s+y++L kkG+ny+a+CPFh++ +pS+++spek++y CF+C+a+G++i+F++++e+++f +a++ +++ka+++l++ k+
MMSYN1_0406 4 ISNEKINEIISQVSIVDVISSYLHLIKKGSNYLAICPFHNDSNPSLTISPEKRIYTCFSCKASGNVINFVKDFEHVEFLTALKTVCDKANISLDEFKN 101
7899*******************************************************************************************999 PP
TIGR01391 100 ekekeekekkkkllelleeaakffkkeLkktkegekaldYLkkRglseetikrFelGyapekeealaklleekkkikeellveagllvkkengkvydr 197
++ ++ + +++++l++ea+++fk++L ++ +al+YLk+R+++ e+ik+Fe+G+a++k++ ++kll + ++++ ++++a+l + + n+ + d
MMSYN1_0406 102 YNQPIKDLEAETIFKLNSEANNIFKTTLFSNLG-IQALEYLKSRNITIEQIKKFEIGFASDKTNLVQKLLDK--NYNSLDIEKANLGIIT-NSYTKDY 195
98889999**********************885.56**************************7777777777..7***********9998.8899*** PP
TIGR01391 198 FrdRiifPikdskgkvvgFgGRald.dekpKYlNspetklFkKselLygldkakkeikkekelllvEGymDvialhqagiknaVAslGtalteehlkl 294
F +RiifPikd++++v+gF+GR ++ d++pKYlN++e+k+FkKs+l y++ a k k+ k+++++EG+mDvi+l +++i+n++A++Gt+l++ hl+l
MMSYN1_0406 196 FINRIIFPIKDENNQVIGFSGRSFTkDNEPKYLNTKENKVFKKSHLAYNIASALKISKSLKKIIVLEGFMDVISLSKIDINNTIALMGTSLSNYHLNL 293
*************************9************************************************************************ PP
TIGR01391 295 lkrlakeiilcfDgDkAGkkAalraiekllelgikvkvvklpegkDpdellrkegkealkkllenskslveflieelkekknldsaeekaklveellk 392
+kr + +++l++DgD+ G++A +++ ++ll+++i+v v++ + ++Dpdel+++ ++e lk+++++ ++ v++lie+l +k +++++++ +++++++l+
MMSYN1_0406 294 FKRHNLDVLLFLDGDDPGIQANIKISHQLLKEKINVLVIDNQTNNDPDELVNN-NVEYLKQIINQPIHPVNYLIEKLWNKVDINNPNQIENFIKKVLN 390
**************************************************986.5899**************************************** PP
TIGR01391 393 likklkdkllrkkylkklae 412
+i l++++l ++ ++kl e
MMSYN1_0406 391 FIFDLNNEILVETTINKLVE 410
*************9999876 PP
== domain 2 score: -0.3 bits; conditional E-value: 0.02
TIGR01391 92 ldlelekkekekeekekkkkllelleeaakffkkeLkktkegekaldYLk.kRg 144
++l++++k +++ +k+++ ++++++ +++k+ k++ k+++++ ++Y++ +R
MMSYN1_0406 424 IELKKQSKPNNSFNKNSTTQVFKTNTQTNKVNKQQSKSKPNDFIKKEYINaERR 477
677777777777788888899999999999999988888875557888876665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (612 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 430 (0.0958111); expected 89.8 (0.02)
Passed bias filter: 72 (0.0160428); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 4394.29
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0406 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0407 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0407.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0407/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0407 [L=506]
Description: rpoD 4=Probable Transcription
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-106 353.4 15.3 3.4e-95 316.1 1.7 3.4 3 TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
5.2e-84 280.0 13.6 2.2e-75 251.7 0.2 3.8 4 TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyan
5e-78 260.4 11.3 2e-73 245.4 1.7 3.0 3 TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS
2.5e-43 145.5 2.2 2.5e-43 145.5 2.2 2.3 2 TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70
3.5e-38 129.7 18.4 2.8e-31 107.1 0.3 3.1 3 TIGR02392 rpoH_proteo: alternative sigma factor RpoH
5.1e-34 115.9 0.7 5.1e-34 115.9 0.7 2.6 3 TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/
2e-28 97.6 13.6 3.5e-25 87.0 0.1 3.3 3 TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG
2.5e-28 97.5 0.8 2.5e-28 97.5 0.8 2.5 2 TIGR02885 spore_sigF: RNA polymerase sigma-F factor
1.1e-25 88.5 1.3 1.1e-25 88.5 1.3 2.1 2 TIGR02850 spore_sigG: RNA polymerase sigma-G factor
5.6e-20 69.8 17.4 1e-15 55.9 0.2 4.1 4 TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor
5.7e-17 59.9 15.8 1.3e-15 55.5 0.2 3.8 4 TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor
5.5e-16 56.7 1.7 5.5e-16 56.7 1.7 2.6 3 TIGR02941 Sigma_B: RNA polymerase sigma-B factor
1.9e-07 28.7 0.1 1.9e-07 28.7 0.1 4.1 4 TIGR02859 spore_sigH: RNA polymerase sigma-H factor
------ inclusion threshold ------
0.072 11.0 4.1 5.1 4.9 0.8 3.4 3 TIGR02952 Sig70_famx2: RNA polymerase sigma-70 factor, TIGR0
6.1 4.3 10.2 2.1 5.8 2.9 2.4 2 TIGR04211 SH3_and_anchor: SH3 domain protein
Domain annotation for each model (and alignments):
>> TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.3 0.7 0.36 1.1e+02 142 173 .. 66 97 .. 13 172 .. 0.71
2 ! 316.1 1.7 1.1e-97 3.4e-95 2 210 .. 208 418 .. 207 455 .. 0.95
3 ! 44.6 2.1 1e-14 3e-12 169 236 .. 432 502 .. 416 504 .. 0.67
Alignments for each domain:
== domain 1 score: 0.3 bits; conditional E-value: 0.36
TIGR02393 142 dselgdfiedeevespedaaakellkeeleev 173
++d+i+d+ ++ +++++e+ +lee+
MMSYN1_0407 66 GIVFSDLIDDDIEQEELEEVEEEIEDVNLEEL 97
44566666666555555666555555555543 PP
== domain 2 score: 316.1 bits; conditional E-value: 1.1e-97
TIGR02393 2 kkklvesnlrlvvsiakkylnrGlsfldliqeGniGllkavekfdykkgykfstyatWWirqaitraiadqartiriPvhlvetinklakaerkllqe 99
++kl+esnl+lv+s+a+k+lnrGl+f dli+eGniGl+kav+kf+y+kg+kfstyatWWirqaitraiadqartiriPvh+vetinkla++er+l+qe
MMSYN1_0407 208 RNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLARVERQLTQE 305
799*********************************************************************************************** PP
TIGR02393 100 lgrepteeelaeklg..leaekvkeikklakepvslekpigeeedselgdfiedeevespedaaakellkeeleevletlsereekvlklryGledgk 195
lgrep+++e+a+++g ++ +kv eikkl+ epvslekp g+e+d+++gdf+ed+++ sp+++++ke+lke +++v+e + +reekv+++ryG+++++
MMSYN1_0407 306 LGREPNADEIANRVGegITGDKVIEIKKLSIEPVSLEKPFGDEDDTHFGDFVEDKDMVSPNEYTEKEILKEVMDKVFEDMPPREEKVIRMRYGIVPTR 403
**************9889******************************************************************************** PP
TIGR02393 196 ektleevgkefnvtr 210
+tl +++e n +
MMSYN1_0407 404 LRTLLRLAQECNDSN 418
******999987554 PP
== domain 3 score: 44.6 bits; conditional E-value: 1e-14
TIGR02393 169 eleevletlsereekvlklryGledgkektleevgkefnvtrerirqieskalrklrhpsks....kklkdf 236
+l++ +e++ + ++++++ ++ +tleevgke+nvtrerirqie+k++rkl++ps + k+lk+f
MMSYN1_0407 432 HLDTPIEKVRKFNNQIINNNLAK-YDSARTLEEVGKELNVTRERIRQIEAKTIRKLKQPSPNnksgKTLKEF 502
44555555555555666554432.33789****************************997651111456666 PP
>> TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.7 0.7 1.1 3.1e+02 215 245 .. 65 96 .. 41 121 .. 0.62
2 ! 10.9 0.0 0.00016 0.047 1 27 [. 169 195 .. 169 202 .. 0.93
3 ! 251.7 0.2 7.3e-78 2.2e-75 73 282 .. 205 417 .. 195 429 .. 0.95
4 ! 25.3 1.1 6.6e-09 2e-06 241 298 .] 431 487 .. 415 487 .. 0.77
Alignments for each domain:
== domain 1 score: -1.7 bits; conditional E-value: 1.1
TIGR02997 215 edtelgdlled.eeeePeeeveeellkedlee 245
+ ++dl++d e+e eeveee+ +lee
MMSYN1_0407 65 KGIVFSDLIDDdIEQEELEEVEEEIEDVNLEE 96
33445566655333444455555555555544 PP
== domain 2 score: 10.9 bits; conditional E-value: 0.00016
TIGR02997 1 Dlvrlylqeigrvplltaeeeielarq 27
D++++y+ +ig+ p+lt+e+ei +a+
MMSYN1_0407 169 DIIKTYFYKIGQAPILTKEQEIIYAKM 195
899*********************985 PP
== domain 3 score: 251.7 bits; conditional E-value: 7.3e-78
TIGR02997 73 rrAkeklikanLRLvvsvAkkYqkrglellDLiqeGslGleravekFdptkGykfstyAyWWirqgitraiaeqsrtiRlPiHiteklnklkkvqrel 170
++ ++kli++nL+Lv+svA+k +rgl++ DLi eG++Gl++av+kF+++kG+kfstyA+WWirq+itraia+q+rtiR+P+H++e++nkl +v+r+l
MMSYN1_0407 205 QEGRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLARVERQL 302
67899********************************************************************************************* PP
TIGR02997 171 sqklgrepseaelaeal..eleveqvrellkaarkpvsLdakvGkeedtelgdlled.eeeePeeeveeellkedleellaeLkererevlrlrfGle 265
+q+lgrep+++e+a+++ +++ ++v e+ k + +pvsL+++ G+e+dt++gd++ed + +P+e+ e+e+lke ++++++++ +re++v+r+r+G+
MMSYN1_0407 303 TQELGREPNADEIANRVgeGITGDKVIEIKKLSIEPVSLEKPFGDEDDTHFGDFVEDkDMVSPNEYTEKEILKEVMDKVFEDMPPREEKVIRMRYGIV 400
****************94459************************************8889************************************* PP
TIGR02997 266 deeeltlaeigeelnls 282
+ +tl +++e n s
MMSYN1_0407 401 PTRLRTLLRLAQECNDS 417
*******9999988765 PP
== domain 4 score: 25.3 bits; conditional E-value: 6.6e-09
TIGR02997 241 edleellaeLkererevlrlrfGledeeeltlaeigeelnlsrervrqiekkalkklr 298
+l++ ++++++ ++++++ + ++++tl+e+g+eln++rer+rqie+k+++kl+
MMSYN1_0407 431 IHLDTPIEKVRKFNNQIINNNLA-KYDSARTLEEVGKELNVTRERIRQIEAKTIRKLK 487
45667777777777888777665.446789**************************96 PP
>> TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.7 3.5 2.5 7.6e+02 164 208 .. 56 102 .. 12 130 .. 0.49
2 ! 245.4 1.7 6.5e-76 2e-73 7 253 .. 163 415 .. 159 424 .. 0.95
3 ! 28.4 2.4 8.8e-10 2.6e-07 201 272 .. 420 488 .. 409 497 .. 0.76
Alignments for each domain:
== domain 1 score: -2.7 bits; conditional E-value: 2.5
TIGR02394 164 edvskllklnekias..ldapldedsekslldlladekseePeelvq 208
e++ ++l+ + + s +d +++++ + + + + d + ee eel +
MMSYN1_0407 56 EKILDVLQQKGIVFSdlIDDDIEQEELEEVEEEIEDVNLEELEELEN 102
33333333333333333455555555555555555544444443333 PP
== domain 2 score: 245.4 bits; conditional E-value: 6.5e-76
TIGR02394 7 aeekaadaiqlylreiglkplltaeeelalarralaGd....vearkkmiesnlrlvvkiakkyvnrGlplldlieeGnlGllkavekfdPerGfrfs 100
+e+k +d i++y+ +ig++p+lt+e+e+ +a+ a+ d +e r+k+iesnl+lv+++a+k++nrGl + dlieeGn+Gl+kav+kf+ e+Gf+fs
MMSYN1_0407 163 NETKIQDIIKTYFYKIGQAPILTKEQEIIYAKMAVSDDpedvQEGRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFS 260
678899*****************************998333336899*************************************************** PP
TIGR02394 101 tyatWWirqtieraimnqartirlPvhvvkelnvvlraarklekkldreasveevaelldkpv..edvskllklnekiasldapldedsekslldlla 196
tyatWWirq+i rai +qartir+Pvh+v +n++ r +r+l+++l+re+ ++e+a+ ++ + ++v ++ kl + +sl++p+++++ + + d++
MMSYN1_0407 261 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLARVERQLTQELGREPNADEIANRVGEGItgDKVIEIKKLSIEPVSLEKPFGDEDDTHFGDFVE 358
***********************************************************99774489******************************* PP
TIGR02394 197 dekseePeelvqnedlkelieallaelnekerevlarrfGlreyekatleevakelg 253
d++ +P+e +++e lke+++++++++ +e +v+ r+G+ + tl +a+e +
MMSYN1_0407 359 DKDMVSPNEYTEKEILKEVMDKVFEDMPPREEKVIRMRYGIVPTRLRTLLRLAQECN 415
***************************************************999875 PP
== domain 3 score: 28.4 bits; conditional E-value: 8.8e-10
TIGR02394 201 eePeelvqnedlkelieallaelnekerevlarrfGlreye.katleevakelgltrervrqiqvealkklkr 272
+e ++ e+l ++++ ++++ + + +++ + +y+ + tleev+kel++trer+rqi ++++klk+
MMSYN1_0407 420 KELKQ--AIEELDIHLDTPIEKVRKFNNQIINNNLA--KYDsARTLEEVGKELNVTRERIRQIEAKTIRKLKQ 488
22222..33577778889999999999999988754..444168***************************97 PP
>> TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 1.6 0.15 44 66 102 .. 60 100 .. 16 136 .. 0.58
2 ! 145.5 2.2 8.5e-46 2.5e-43 2 163 .. 207 488 .. 206 490 .. 0.90
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.15
TIGR02937 66 dalrrkrelkvtneveiskekeeeeledeed.......rpeeqe 102
d l +k ++ ++ i++++e+eele+ e+ ++ e++
MMSYN1_0407 60 DVLQQKG---IVFSDLIDDDIEQEELEEVEEeiedvnlEELEEL 100
3333333...2233333333333333333331112111222222 PP
== domain 2 score: 145.5 bits; conditional E-value: 8.5e-46
TIGR02937 2 aleqliesylplvykvarkylgdsldaeDlvqegflglikaldkfdpessfk..tyaysvirnsiidalrrkrelkvtneveiskekeeeeledeed. 96
+++lies+l+lv++vark+l+++ld++Dl++eg++gl+ka+dkf++e++fk tya+++ir++i++a+ +++ ++++++v++++++++ + ++++
MMSYN1_0407 207 GRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKfsTYATWWIRQAITRAIADQA-RTIRIPVHMVETINKLARVERQLt 303
689*********************************************998888****************999.99**********555555555555 PP
TIGR02937 97 ............................................................rpeeqeeaeelrerleqalekLperereilklry.... 130
+p+e +e+e+l+e++++++e +p+re++++++ry
MMSYN1_0407 304 qelgrepnadeianrvgegitgdkvieikklsiepvslekpfgdeddthfgdfvedkdmvSPNEYTEKEILKEVMDKVFEDMPPREEKVIRMRYgivp 401
555666666667777777788888888888888888888888888899999999999999************************************** PP
TIGR02937 131 ......................................................leglslkeiAeelgisqetvsrilkraikkLkk 163
+l+e+++el++++e++++i++++i+kLk+
MMSYN1_0407 402 trlrtllrlaqecndsnakelkqaieeldihldtpiekvrkfnnqiinnnlakyDSARTLEEVGKELNVTRERIRQIEAKTIRKLKQ 488
*********************************************9999965533366***************************98 PP
>> TIGR02392 rpoH_proteo: alternative sigma factor RpoH
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.3 4.4 0.54 1.6e+02 135 210 .. 75 152 .. 53 167 .. 0.73
2 ! 107.1 0.3 9.4e-34 2.8e-31 3 249 .. 171 417 .. 169 428 .. 0.80
3 ! 32.2 2.8 6.6e-11 2e-08 195 266 .. 416 488 .. 401 490 .. 0.83
Alignments for each domain:
== domain 1 score: -0.3 bits; conditional E-value: 0.54
TIGR02392 135 galseeeveavaeeL.gvseeevlemes..RlsgkDlsleaeseededeseelieyLadkeseaeeeleeeeeeekqke 210
++++ee+e+v ee+ +v+ ee e+e+ l D+ l+++s++ +d +e++ + L + ++ ++++++ +++++ +++
MMSYN1_0407 75 DDIEQEELEEVEEEIeDVNLEELEELENleDLDDLDFDLDSTSNNLDDYDENVNDDLDEFKEAKSAAIKGRKSAK-SSN 152
568899999999998459999999999622577777778888887777777788888777766665555544443.333 PP
== domain 2 score: 107.1 bits; conditional E-value: 9.4e-34
TIGR02392 3 leaYiravnklplLeaeeekelakrlree..kdle.aakkLvlshLrlvvkiargYrgYGLpqadliqegniGLmkavkrfdPergvRlvsfavhWik 97
+++Y+ ++ + p+L++e+e +ak ++ +d++ +kL+ s+L+lv+++ar++ GL+ adli+egniGLmkav +f+ e+g++++++a +Wi+
MMSYN1_0407 171 IKTYFYKIGQAPILTKEQEIIYAKMAVSDdpEDVQeGRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWIR 268
789********************98754412566515679********************************************************** PP
TIGR02392 98 aeiheyilrnWrlvkvattk..aqrkLFFnlrkakkklkgalseeeveavaeeL..gvseeevlemesRlsgkDlsleaeseededeseelieyLadk 191
+i i + r +++ + kL r+ ++l +e +++++a+++ g++ ++v+e++ +ls + +sle++ +++d ++ ++++dk
MMSYN1_0407 269 QAITRAIADQARTIRIPVHMveTINKLARVERQLTQEL---GREPNADEIANRVgeGITGDKVIEIK-KLSIEPVSLEKPFGDEDD--THFGDFVEDK 360
***************98765004455554444444444...35668899999883359999****96.79999********99654..5788999999 PP
TIGR02392 192 eseaeeeleeeeeeekqkeklkealekldersrriieaRwle..dekltLeelaaeygvs 249
+ + e e+e ke +++ +e + r+ ++i+ R + tL +la+e + s
MMSYN1_0407 361 DMVSPN---EYTEKEILKEVMDKVFEDMPPREEKVIRMRYGIvpTRLRTLLRLAQECNDS 417
744444...34445566778889999*************744337788999999987765 PP
== domain 3 score: 32.2 bits; conditional E-value: 6.6e-11
TIGR02392 195 aeeeleeeeeeekqkeklkealekldersrriieaRwle.dekltLeelaaeygvsaeRvRqiekkalkklka 266
+++ e ++ e+ +l++ +ek+ + + +ii++ + d++ tLee+ +e++v +eR+Rqie+k+++klk+
MMSYN1_0407 416 DSNAKELKQAIEELDIHLDTPIEKVRKFNNQIINNNLAKyDSARTLEEVGKELNVTRERIRQIEAKTIRKLKQ 488
333345566677778899999999**********99999899*****************************96 PP
>> TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.1 0.8 3.9 1.2e+03 179 179 .. 85 85 .. 33 140 .. 0.59
2 ! 115.9 0.7 1.7e-36 5.1e-34 3 191 .. 206 397 .. 204 406 .. 0.89
3 ? 5.2 0.5 0.012 3.6 172 224 .. 433 488 .. 415 490 .. 0.78
Alignments for each domain:
== domain 1 score: -3.1 bits; conditional E-value: 3.9
TIGR02980 179 L 179
MMSYN1_0407 85 V 85
1 PP
== domain 2 score: 115.9 bits; conditional E-value: 1.7e-36
TIGR02980 3 eareklvelnlkLvesiarrfrsrgeeleDlvQvgtiGLlkaidrfdlsrgvkFstyavPtivGEikrflRDktwavrvpRrlkelaakikkateeLt 100
e r+kl+e nlkLv s+ar++ +rg ++ Dl+ g+iGL+ka+d+f++++g kFstya i i r + D+ +++r+p ++ e+ +k+++++ +Lt
MMSYN1_0407 206 EGRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLARVERQLT 303
679*********************************************************************************************** PP
TIGR02980 101 qklgrePtveeiaeele..vseeevvealeaaksysassldasvedddgdeialldtlgeedeel.eeveeklalkell....akLdererrilllrf 191
q+lgreP++ eia++++ ++ ++v+e+ + + + + sl++++ d+d++ d + ++d +e +ek++lke++ +++++re +++ +r+
MMSYN1_0407 304 QELGREPNADEIANRVGegITGDKVIEIKKLSIE--PVSLEKPFG--DEDDTHFGDFVEDKDMVSpNEYTEKEILKEVMdkvfEDMPPREEKVIRMRY 397
***************954499999*999888777..********9..777788999999998754256677777776651111679***********9 PP
== domain 3 score: 5.2 bits; conditional E-value: 0.012
TIGR02980 172 lkellakLdererril...llrffedktQseiaeelGiSQmqvSRlekralkklre 224
l + ++k + + +i+ l ++ + +t +e+++el + ++ +e+++++kl++
MMSYN1_0407 433 LDTPIEKVRKFNNQIInnnLAKYDSARTLEEVGKELNVTRERIRQIEAKTIRKLKQ 488
556666667777777733335788899***************************97 PP
>> TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.0 1.4 0.23 69 112 146 .. 81 115 .. 56 154 .. 0.60
2 ! 87.0 0.1 1.2e-27 3.5e-25 17 188 .. 224 397 .. 211 399 .. 0.89
3 ! 16.0 1.7 5.9e-06 0.0018 151 221 .. 415 488 .. 402 489 .. 0.84
Alignments for each domain:
== domain 1 score: 1.0 bits; conditional E-value: 0.23
TIGR02479 112 dlkevrkaleeinaeslvsldellesedeelslad 146
+l+ev++ e++n e+l l++l++ +d ++ l++
MMSYN1_0407 81 ELEEVEEEIEDVNLEELEELENLEDLDDLDFDLDS 115
34444444444455554444444444444333322 PP
== domain 2 score: 87.0 bits; conditional E-value: 1.2e-27
TIGR02479 17 kvklpssveleDliqaGmlgLldaierydeekgvkFetyavlRirGai....lDeLRkldwvprslrkkakkleeaieelearlgrepteeeiaeelg 110
+++l + ++++Dli+ G +gL++a+++++ ekg+kF+tya+ +ir ai D+ R + +p ++ ++++kl+++ ++l+++lgrep+ eia+ +g
MMSYN1_0407 224 RKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWIRQAItraiADQARTIR-IPVHMVETINKLARVERQLTQELGREPNADEIANRVG 320
45788899*************************************976222157777764.6888889*****************************9 PP
TIGR02479 111 ldlkevrkaleeinaeslvsldellesedeelsladliedkksedpeeelereelkeklaeaiekLsereklvlsLyY 188
+ + ++ + + + vsl++ +ed+ ++ d +edk+ +p+e +e+e lke ++++ e ++ re v+ + Y
MMSYN1_0407 321 EGITGDKVIEIKKLSIEPVSLEKPFGDEDDT-HFGDFVEDKDMVSPNEYTEKEILKEVMDKVFEDMPPREEKVIRMRY 397
99988888888899999*******9999886.79******************************************99 PP
== domain 3 score: 16.0 bits; conditional E-value: 5.9e-06
TIGR02479 151 kksedpeeelereelkeklaeaiekLsereklvls..L.yYeeeLnlkEigevLelsesRvsQlhskalkkLra 221
++s+++e + + eel+ +l+ iek + + ++++ L Y+ +l E+g+ L+++ R+ Q+ k + kL++
MMSYN1_0407 415 NDSNAKELKQAIEELDIHLDTPIEKVRKFNNQIINnnLaKYDSARTLEEVGKELNVTRERIRQIEAKTIRKLKQ 488
45556667777899999999999999999999996444369999****************************97 PP
>> TIGR02885 spore_sigF: RNA polymerase sigma-F factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 97.5 0.8 8.2e-31 2.5e-28 9 196 .. 204 397 .. 196 406 .. 0.86
2 ? 2.9 1.4 0.064 19 175 229 .. 431 488 .. 406 489 .. 0.74
Alignments for each domain:
== domain 1 score: 97.5 bits; conditional E-value: 8.2e-31
TIGR02885 9 dkeardklveenlrlvssivkrflnrGyeledlfqiGciGlvkaidkfdlsydvkfstyavPliiGeikrflrddg.iikvsrslkelakkirkekee 105
+e r+kl+e+nl+lv+s++++ lnrG + dl G iGl+ka+dkf+ + kfstya i i r + d +i++ + e+ +k+ + +
MMSYN1_0407 204 VQEGRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWIRQAITRAIADQArTIRIPVHMVETINKLARVERQ 301
5789*********************************************************************98538******************** PP
TIGR02885 106 lakklerePtieelaeal..glekeevvaalesakslqslydtvhedd....gdpillldkiadegeeesdllekialkealkkldererqiillry 196
l+++l+reP +e+a+++ g++ ++v++ + + ++ sl + ++d gd + d+++ + e+++l+++ + ++ +++ +re ++i +ry
MMSYN1_0407 302 LTQELGREPNADEIANRVgeGITGDKVIEIKKLSIEPVSLEKPFGDEDdthfGDFVEDKDMVSPNEYTEKEILKEV-MDKVFEDMPPREEKVIRMRY 397
****************97336999****************998877772222344555566666555555555443.5666777899********99 PP
== domain 2 score: 2.9 bits; conditional E-value: 0.064
TIGR02885 175 ialkealkkldererqii...llryfkdktqtevakilGisqvqvsrlekkvlkklke 229
i l ++k+ + + qii l +y +t ev k l +++ ++ ++e k ++klk+
MMSYN1_0407 431 IHLDTPIEKVRKFNNQIInnnLAKYDSARTLEEVGKELNVTRERIRQIEAKTIRKLKQ 488
5566788888888889983334467778899999999999999999999999999886 PP
>> TIGR02850 spore_sigG: RNA polymerase sigma-G factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.5 1.3 3.6e-28 1.1e-25 31 220 .. 203 398 .. 176 433 .. 0.77
2 ? 1.2 0.3 0.16 49 200 251 .. 433 487 .. 410 489 .. 0.63
Alignments for each domain:
== domain 1 score: 88.5 bits; conditional E-value: 3.6e-28
TIGR02850 31 gdkeareklingnlrlvlsviqrfnnrgeyvddlfqvgcigllksidnfdlsqnvkfstyavpmiigeirrylrdnn.pirvsrslrdiaykalqvrd 127
+e r+kli++nl+lv+sv ++ nrg dl++ g igl+k++d+f+ ++ kfstya i i r + d++ +ir+ + + k +v
MMSYN1_0407 203 DVQEGRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWIRQAITRAIADQArTIRIPVHMVETINKLARVER 300
23578********************************************************************997538******************* PP
TIGR02850 128 klvskkskeptvseiakele..vpkeevvfaldaiqdpvslfepiyndggdpiyvmdqisdekn.kdeswleeialkealkrlne....reklilklr 218
+l ++ +ep + eia+ ++ ++ ++v+ +pvsl +p d+ d+ d ++d+ +++ e+ lke ++++ e re+ ++++r
MMSYN1_0407 301 QLTQELGREPNADEIANRVGegITGDKVIEIKKLSIEPVSLEKPFG-DEDDTH-FGDFVEDKDMvSPNEYTEKEILKEVMDKVFEdmppREEKVIRMR 396
*****************9954489999999888889*****99964.554544.45666665441346677777777777765443444999999999 PP
TIGR02850 219 ff 220
+
MMSYN1_0407 397 YG 398
84 PP
== domain 2 score: 1.2 bits; conditional E-value: 0.16
TIGR02850 200 lkealkrlnereklilkl...rffegktqmevaeeigisqaqvsrlekaalkqlk 251
l ++++ + ++ i++ ++ +t ev +e+ +++ ++ ++e ++++lk
MMSYN1_0407 433 LDTPIEKVRKFNNQIINNnlaKYDSARTLEEVGKELNVTRERIRQIEAKTIRKLK 487
4555666666666666541113344677778888888888888888877777765 PP
>> TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 1.1 1.1 3.4e+02 137 170 .. 53 84 .. 25 101 .. 0.69
2 ! 55.9 0.2 3.4e-18 1e-15 30 122 .. 184 280 .. 166 330 .. 0.84
3 ! 15.3 0.2 8.8e-06 0.0026 151 207 .. 359 417 .. 327 428 .. 0.74
4 ! 8.9 1.6 0.00078 0.23 167 223 .. 432 487 .. 415 490 .. 0.78
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 1.1
TIGR02846 137 keGneislldilssdedsvleavekklevkklkk 170
+e + +ld+l+ ++ ++ ++ +e ++l++
MMSYN1_0407 53 NESE--KILDVLQQKGIVFSDLIDDDIEQEELEE 84
3333..3478888888777888888777777654 PP
== domain 2 score: 55.9 bits; conditional E-value: 3.4e-18
TIGR02846 30 lseeeekkylerlkeGd....eearnvliernlrlvahivkkfentgkdvddlisiGtiGlikaidsfdtekGtklatyaarcieneilmllralkk 122
l++e+e +y + + d +e rn+lie nl+lv + +k+ n g d dli G iGl+ka+d f+ ekG k++tya+ i i + + +
MMSYN1_0407 184 LTKEQEIIYAKMAVSDDpedvQEGRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWIRQAITRAIADQAR 280
566667777666655553333578*********************************************************9999999877766544 PP
== domain 3 score: 15.3 bits; conditional E-value: 8.8e-06
TIGR02846 151 dedsvl..eavekklevkklkkklkvlkerekevielryGlkdgeektqreiakklgis 207
d+d v+ e+ ek++ + + k ++ + +re +vi++ryG+ ++ +t +a++ + s
MMSYN1_0407 359 DKDMVSpnEYTEKEILKEVMDKVFEDMPPREEKVIRMRYGIVPTRLRTLLRLAQECNDS 417
455553227788888888888888***********************999999887655 PP
== domain 4 score: 8.9 bits; conditional E-value: 0.00078
TIGR02846 167 klkkklkvlkerekevielryGlkdgeektqreiakklgisrsyvsriekkalkkll 223
+l + ++++++ ++++i++ +d + +t e+ k+l+++r + +ie k+++kl
MMSYN1_0407 432 HLDTPIEKVRKFNNQIINNNLAKYD-SARTLEEVGKELNVTRERIRQIEAKTIRKLK 487
3566678888999999999987665.57899************************96 PP
>> TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 0.8 1.1 3.4e+02 147 180 .. 68 98 .. 17 119 .. 0.62
2 ! 55.5 0.2 4.3e-18 1.3e-15 32 139 .. 182 294 .. 163 322 .. 0.80
3 ! 11.2 0.1 0.00015 0.045 156 201 .. 360 407 .. 339 418 .. 0.83
4 ? 2.5 1.1 0.066 20 172 228 .. 433 488 .. 414 490 .. 0.81
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 1.1
TIGR02835 147 llsdvlgtdsdivykeleeevdrellkkalkkln 180
++sd++ d+di +ele ev+ e+ + l++l+
MMSYN1_0407 68 VFSDLI--DDDIEQEELE-EVEEEIEDVNLEELE 98
333333..3444444443.355555555555554 PP
== domain 2 score: 55.5 bits; conditional E-value: 4.3e-18
TIGR02835 32 ppltkeeeealleklekgd.....eavksiliernlrlvvyiarkfentginiedlvsigtiglikavntfdpekkiklatyasrcieneilmylrrn 124
p ltke+ e + k+ d ++ ++ lie nl+lv+ +ark n g+ dl+ g igl+kav+ f+ ek k++tya+ i + i + +
MMSYN1_0407 182 PILTKEQ-EIIYAKMAVSDdpedvQEGRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWIRQAITRAIADQ 278
4455555.455666665552333356799**********************************************************99998877655 PP
TIGR02835 125 nk.irsevsfdeplnv 139
++ ir v + e +n+
MMSYN1_0407 279 ARtIRIPVHMVETINK 294
4416778888777775 PP
== domain 3 score: 11.2 bits; conditional E-value: 0.00015
TIGR02835 156 sdiv..ykeleeevdrellkkalkklndrekkilelrfgladgeektq 201
+d+v ++ e+e+ +e++ k ++ ++ re k++++r+g++ + +t
MMSYN1_0407 360 KDMVspNEYTEKEILKEVMDKVFEDMPPREEKVIRMRYGIVPTRLRTL 407
555522468899999999**********************99888875 PP
== domain 4 score: 2.5 bits; conditional E-value: 0.066
TIGR02835 172 lkkalkklndrekkilelrfgladgeektqkevadllgisqsyisrlekrilkrlkk 228
l + ++k+ + +++i++ + d + +t ev l +++ i ++e + +++lk+
MMSYN1_0407 433 LDTPIEKVRKFNNQIINNNLAKYD-SARTLEEVGKELNVTRERIRQIEAKTIRKLKQ 488
567789999999999999988776.579**************************996 PP
>> TIGR02941 Sigma_B: RNA polymerase sigma-B factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.7 0.4 1.2 3.7e+02 5 39 .. 29 63 .. 27 99 .. 0.79
2 ! 56.7 1.7 1.8e-18 5.5e-16 11 218 .. 185 397 .. 177 400 .. 0.80
3 ? -0.7 0.1 0.61 1.8e+02 223 251 .. 460 488 .. 423 490 .. 0.77
Alignments for each domain:
== domain 1 score: -1.7 bits; conditional E-value: 1.2
TIGR02941 5 sqptnlskeeviklikelqknkneeaqeklvkkyk 39
++ +++s+e+v ++ +++ n +++ ek+++ +
MMSYN1_0407 29 KNNNEISSEDVLEVFANIFPNASDNESEKILDVLQ 63
56677888888888888888877777777766544 PP
== domain 2 score: 56.7 bits; conditional E-value: 1.8e-18
TIGR02941 11 skeeviklikelqknkneeaqe...klvkkykdlvesiaykyskgsaihedlvqvGmvGllgairrydlsigkafeafaiptiiGeikrylrdktwsv 105
+ke+ i + k + e++qe kl++ +lv s+a+k+ + dl++ G +Gl+ a+ ++++ g +f ++a i i r + d++ ++
MMSYN1_0407 185 TKEQEIIYAKMAVSDDPEDVQEgrnKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWIRQAITRAIADQARTI 282
55555555555555555555533339************************************************************************ PP
TIGR02941 106 hvprrikelGpkikkavdeltaelqrspkiaeiadrlg..vseeevleimemgqsykalsvddkieadsd...GstvalldlvGesedgydqtekrlv 198
+p + e k+ ++ +lt+el r p+ eia+r+g ++ ++v+ei + s + +s+++ ++d G v d+v +e +++ + v
MMSYN1_0407 283 RIPVHMVETINKLARVERQLTQELGREPNADEIANRVGegITGDKVIEIKK--LSIEPVSLEKPFGDEDDthfGDFVEDKDMVSPNEYTEKEI-LKEV 377
************************************963378999999975..5788899999887777733345555556665544333333.3456 PP
TIGR02941 199 lekilpilserekeiiecif 218
++k+++ + re+++i++ +
MMSYN1_0407 378 MDKVFEDMPPREEKVIRMRY 397
78888888889999998766 PP
== domain 3 score: -0.7 bits; conditional E-value: 0.61
TIGR02941 223 sqketGerlGisqmhvsrlkrraikklke 251
+ e G+ l +++ + +++ ++i+klk+
MMSYN1_0407 460 TLEEVGKELNVTRERIRQIEAKTIRKLKQ 488
44678889999999999999999999987 PP
>> TIGR02859 spore_sigH: RNA polymerase sigma-H factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.6 3.0 0.063 19 111 156 .. 52 99 .. 12 136 .. 0.76
2 ! 28.7 0.1 6.3e-10 1.9e-07 20 107 .. 207 294 .. 188 303 .. 0.90
3 ? 2.2 0.1 0.083 25 103 158 .. 339 392 .. 324 398 .. 0.74
4 ? 1.7 0.5 0.12 35 116 194 .. 405 487 .. 401 489 .. 0.76
Alignments for each domain:
== domain 1 score: 2.6 bits; conditional E-value: 0.063
TIGR02859 111 deesdrtlldvvseakv..adpeeliiskeelakieskleel.lselel 156
d+es+ +ldv+ ++ + +d + i +eel+++e+++e++ l ele
MMSYN1_0407 52 DNESE-KILDVLQQKGIvfSDLIDDDIEQEELEEVEEEIEDVnLEELEE 99
45555.478999876551156666679*************985566654 PP
== domain 2 score: 28.7 bits; conditional E-value: 6.3e-10
TIGR02859 20 aleyliekyknfvkakarsyflvgadkediiqegmiglykairdykedklssfkafaelcvtrqiitaiktatrqkhiplnsyvsldk 107
+ lie ++v + ar ++ g d d+i+eg igl ka+ ++ +k f ++a + + i ai +r ip+ +++k
MMSYN1_0407 207 GRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 294
56789999999*************************************************9999999************987766665 PP
== domain 3 score: 2.2 bits; conditional E-value: 0.083
TIGR02859 103 vsldkpiydeesdrtlldvvseakvadpeeliiskeelakieskleellselelkv 158
vsl+kp +e d + d v ++ ++ p+e ke l+++ +k+ e + e kv
MMSYN1_0407 339 VSLEKPF-GDEDDTHFGDFVEDKDMVSPNEYT-EKEILKEVMDKVFEDMPPREEKV 392
8*****6.556689999***********9974.56666666666655555555555 PP
== domain 4 score: 1.7 bits; conditional E-value: 0.12
TIGR02859 116 rtlldvvseakvadpeeliiskeela.kieskleel...lselelkvlvlyldgksyqeiaedlnrhvksidnalqrvkrkle 194
rtll + e ++ +el + eel ++++ +e++ ++ + l++y ++ +e+ ++ln i + + rkl+
MMSYN1_0407 405 RTLLRLAQECNDSNAKELKQAIEELDiHLDTPIEKVrkfNNQIINNNLAKYDSARTLEEVGKELNVTRERIRQIEAKTIRKLK 487
888888899999999999888888753566555554111567788889999999********999988888887777777776 PP
>> TIGR02952 Sig70_famx2: RNA polymerase sigma-70 factor, TIGR02952 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.1 0.0 0.62 1.9e+02 39 102 .. 234 301 .. 224 319 .. 0.69
2 ? 4.1 0.0 0.03 9 102 136 .. 364 398 .. 353 403 .. 0.92
3 ? 4.9 0.8 0.017 5.1 134 168 .. 454 488 .. 408 489 .. 0.74
Alignments for each domain:
== domain 1 score: -0.1 bits; conditional E-value: 0.62
TIGR02952 39 eDLvsevFlrvlrkissfkekkn.dfea...WLftiA.rnvvaDyfrkskrrpelsldvlkellsaeps 102
DL++e +++ +++f+++k +f++ W ++ A +aD r r p+ ++ +++l+ +e++
MMSYN1_0407 234 ADLIEEGNIGLMKAVDKFEYEKGfKFSTyatWWIRQAiTRAIADQARTI-RIPVHMVETINKLARVERQ 301
5888888888899999999887656553222555544256788887765.4566677777778777764 PP
== domain 2 score: 4.1 bits; conditional E-value: 0.03
TIGR02952 102 sPeeavlkelaneklleavkkLtpkqqeviaLrFa 136
sP+e ++ke+ +e + ++ + + p++ +vi +r++
MMSYN1_0407 364 SPNEYTEKEILKEVMDKVFEDMPPREEKVIRMRYG 398
79******************************986 PP
== domain 3 score: 4.9 bits; conditional E-value: 0.017
TIGR02952 134 rFaqnLkiaevarilgktegavkalqfravkkLkr 168
++ + +ev + l+ t + ++++ +++++kLk+
MMSYN1_0407 454 KYDSARTLEEVGKELNVTRERIRQIEAKTIRKLKQ 488
677777899************************85 PP
>> TIGR04211 SH3_and_anchor: SH3 domain protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.8 2.9 0.0072 2.1 58 131 .. 72 145 .. 53 155 .. 0.89
2 ? 2.5 0.8 0.077 23 67 125 .. 418 480 .. 393 502 .. 0.57
Alignments for each domain:
== domain 1 score: 5.8 bits; conditional E-value: 0.0072
TIGR04211 58 lseepsarerleelqkelaelqeelaelkeelaelkqelkelkeelekleeekeklekelekikklsenalele 131
l ++ +e+lee+++e+++++ e e e+l++l++ +l+++ ++l + e+++++l++ k+++++a++ +
MMSYN1_0407 72 LIDDDIEQEELEEVEEEIEDVNLEELEELENLEDLDDLDFDLDSTSNNLDDYDENVNDDLDEFKEAKSAAIKGR 145
5566778899************99999999999****9999*************************99998755 PP
== domain 2 score: 2.5 bits; conditional E-value: 0.077
TIGR04211 67 rleelqkelaelqeelaelkeelaelkqelkelkeelekleeekeklekel....ekikklse 125
++el++ ++el l+ e++ + ++++ + + ++ + ++e++ kel e+i+++++
MMSYN1_0407 418 NAKELKQAIEELDIHLDTPIEKVRKFNNQIINNNLAKYDSARTLEEVGKELnvtrERIRQIEA 480
455556666666555555555555555555543333333333333333333000033333333 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (506 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 406 (0.0904635); expected 89.8 (0.02)
Passed bias filter: 158 (0.035205); expected 89.8 (0.02)
Passed Vit filter: 26 (0.00579323); expected 4.5 (0.001)
Passed Fwd filter: 15 (0.00334225); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 15 [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 2422.13
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0407 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0408 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0408.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0408/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0408 [L=225]
Description: tRNA: m1A22 methyltransferase? 2=Generic tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-05 21.5 0.0 5.2e-05 20.7 0.0 1.4 1 TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransf
0.00011 19.7 0.1 0.00019 18.9 0.1 1.3 1 TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransfer
0.00019 18.5 0.1 0.00042 17.4 0.1 1.5 1 TIGR00536 hemK_fam: methyltransferase, HemK family
------ inclusion threshold ------
0.012 13.9 0.0 0.022 13.0 0.0 1.4 1 TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarb
Domain annotation for each model (and alignments):
>> TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.7 0.0 4.6e-08 5.2e-05 120 188 .. 14 82 .. 2 91 .. 0.88
Alignments for each domain:
== domain 1 score: 20.7 bits; conditional E-value: 4.6e-08
TIGR03533 120 eevkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrveliqsdlfealegk 188
++ +++ d+ t l i + ++ ++ a Di ++ L++a +n+e+++l+d++ +i s+ e +++k
MMSYN1_0408 14 NNSTTIADIGTDHAYLPIYLVQNNKTKIAYACDINQKPLKIALKNVEKFGLTDQIFTILSNGLEFVKNK 82
5678899***************99999999******************************998887765 PP
>> TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.9 0.1 1.7e-07 0.00019 82 151 .. 11 79 .. 6 91 .. 0.83
Alignments for each domain:
== domain 1 score: 18.9 bits; conditional E-value: 1.7e-07
TIGR03534 82 eelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdlleal 151
+ +++++ +++D+gt + + l ++ ++ +a+Di+++ lk+a kN+++ gl++ + ++ s+ le +
MMSYN1_0408 11 KLINNST--TIADIGTDHAYLPIYLVQNNKTKIAYACDINQKPLKIALKNVEKFGLTDqIFTILSNGLEFV 79
4445555..9*********************************************9988777777776666 PP
>> TIGR00536 hemK_fam: methyltransferase, HemK family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.4 0.1 3.7e-07 0.00042 106 181 .. 9 82 .. 5 91 .. 0.87
Alignments for each domain:
== domain 1 score: 17.4 bits; conditional E-value: 3.7e-07
TIGR00536 106 leslisqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnlleslakq 181
++li++ i D+gt + l +++ + +a Di ++ l++a +N+ek++l ++++ i sn le ++++
MMSYN1_0408 9 VAKLINNS--TTIADIGTDHAYLPIYLVQNNKTKIAYACDINQKPLKIALKNVEKFGLTDQIFTILSNGLEFVKNK 82
56777777..59999999999999999999999999*****************************99998877765 PP
>> TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.0 0.0 2e-05 0.022 18 109 .. 14 108 .. 4 120 .. 0.77
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 2e-05
TIGR02469 18 kkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsni..eivegdapkaeedsleeadavfvgGsgkk.lkeileave 109
++ ++ DiG ++i + + + ya + n++ l+ +N+++fg+ + i+ ++ + ++++++ ++d v + G g + + eil+ +
MMSYN1_0408 14 NNSTTIADIGTDHAYLPIYLVQNNKTKIAYACDINQKPLKIALKNVEKFGLTDQifTILSNGLEFVKNKEILNIDYVTICGLGSQtILEILKNDH 108
4456999**************99999999********************76653236777777778888899*******9966550345655444 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (225 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 248 (0.0552585); expected 89.8 (0.02)
Passed bias filter: 84 (0.0187166); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1700.58
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0408 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0409 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0409.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0409/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0409 [L=258]
Description: folE? 2=Generic Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-38 129.9 5.7 3.2e-38 129.8 5.7 1.0 1 TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/
Domain annotation for each model (and alignments):
>> TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 129.8 5.7 7.1e-42 3.2e-38 1 248 [. 1 253 [. 1 255 [. 0.94
Alignments for each domain:
== domain 1 score: 129.8 bits; conditional E-value: 7.1e-42
TIGR00486 1 vnlkeliqlleqfspkalaeegdkiGLqvg...tlnkeikkvlvtldvsesvideAiekevdliiahHplifkslkrlstdqkakrlikillkndiav 95
+ l+++i l+q+++ ++a+++d+ G+q + +n +i+kvlv+ld++++ ++ Ai+++ +lii+ Hp+if+ lk ++ ++k++ik+l k+ i v
MMSYN1_0409 1 MLLDNIISYLNQLFNPKKASNWDHVGFQFDykkLNNINISKVLVCLDLTNDCLEFAISNQIQLIITRHPFIFNELKLEKKNPNKKQMIKKLNKHKILV 98
56899*************************9877889***************************************999******************* PP
TIGR00486 96 yaaHtnlDvadg.GvndlLaeaLeleepkeyeeqglGrvgelkkeitlkelvlevkkklnvkevlvvkkad..ekvkkvAvvsGsGnsyiekalrkgv 190
+++Htn D + ++L ++L+++ k+y +++ + l ++i+ ++l++ k++ +++++ ++ + +k+k+ + sGsG+s + + + k++
MMSYN1_0409 99 FSIHTNYDSSIKqNLLEILNKKLKINSFKKYGKDKESNLFYLDQKISVNDLINDLKEVFSLNKIRLNSNINlnSKIKDFYLTSGSGASTMIENMLKNC 196
********98876899*****************99999*****************************9987779**************9999999998 PP
TIGR00486 191 dvyitGdlshheahlakelGlnvidagHyatermgvrkltemln.kkegleivvsetdt 248
+itG+++ ++ + a++ +n+i gHya++ ++ +l++ l+ k ++ i++ ++ +
MMSYN1_0409 197 -TFITGEVKWDQWIYANSNNVNLIEIGHYAEN-HFIDDLKNKLQiKFKDIKIFNYDIKN 253
.6***************************975.68*********777899999988866 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (258 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 387 (0.0862299); expected 89.8 (0.02)
Passed bias filter: 90 (0.0200535); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1950.00
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0409 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0410 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0410.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0410/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0410 [L=453]
Description: DEAD/DEAH box helicase 2=Generic Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-20 69.5 0.0 5e-20 68.7 0.0 1.3 1 TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-asso
3.7e-20 69.8 2.6 3.7e-20 69.8 2.6 1.3 1 TIGR01389 recQ: ATP-dependent DNA helicase RecQ
2.2e-14 51.0 10.4 3.2e-14 50.5 10.4 1.1 1 TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
2.2e-09 34.7 6.1 0.00024 18.2 0.0 2.4 2 TIGR04095 dnd_restrict_1: DNA phosphorothioation system rest
3.9e-07 26.6 0.0 0.0045 13.2 0.0 2.1 2 TIGR03817 DECH_helic: helicase/secretion neighborhood putati
1.5e-05 22.3 0.8 0.0023 15.1 0.1 2.5 2 TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subty
0.00042 16.7 0.2 0.0037 13.6 0.1 2.2 2 TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
Domain annotation for each model (and alignments):
>> TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 68.7 0.0 7.8e-23 5e-20 14 346 .. 24 338 .. 17 357 .. 0.80
Alignments for each domain:
== domain 1 score: 68.7 bits; conditional E-value: 7.8e-23
TIGR04121 14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvel.rtGDtssserarq 110
p++ Q++v+ +++ ++ + a TG+GKT + lp+l +l+ e++ + ++++ i+P + L+ +i ++ + +++ l i+ +l G+ s++ ++
MMSYN1_0410 24 PTSIQQKVIPLLKKHQNVIALAHTGTGKTHSFLLPILNNLK-LEENDNYVQAVIISPTRELSLQIYQNTKLFLKNNPL-INCNLfIGGEDISKNIEQL 119
677899**********************************9.7777889**********************9998665.4444404455556666777 PP
TIGR04121 111 rkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnl.eeaaevllgeekeekaklvk 207
+kk+p+i++ Tp l+ l ++ ++++ + ++DE ++ + ++ +++ +++++ + sAT+ + + +++ ++ +a+ ++
MMSYN1_0410 120 EKKQPHIVIGTPTRLKELYDL--NKLRLTTTSYFIIDECDMIFDLGFIEDVDYLISK---INQDVTIGIFSATISQQlSVFCKKYIK-----NAHFID 207
899*************99655..55679999*********99998777777776665...6778999889****7530333333333.....455555 PP
TIGR04121 208 akekk..alevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagkl 303
+++k + +v+++l ++++ + ++l ++++ i+ +++F+N + + + L + n + ++a Hg l+ R + ++++++++
MMSYN1_0410 208 DSQNKisTSNVKHVLIDTKN------KELEQSLIQIINSINP-FLCIIFVNQKDEINKIVEILHKNNIK---QVAELHGNLQPRLRLSMLKKIQNNEF 295
43332113455555555222......2335666677777765.579********999999999888777...99************************ PP
TIGR04121 304 ravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHr 346
+ +v+T GvD + v +i + p ++ + R GR++ +
MMSYN1_0410 296 KYLVATDVASRGVDIKGVSHIISINLPSDLTYYIHRSGRTGRN 338
***************************************9865 PP
>> TIGR01389 recQ: ATP-dependent DNA helicase RecQ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.8 2.6 5.8e-23 3.7e-20 17 360 .. 27 380 .. 21 410 .. 0.80
Alignments for each domain:
== domain 1 score: 69.8 bits; conditional E-value: 5.8e-23
TIGR01389 17 gqeeiieevldgrdvlavlPtGGGkslCYqvPaLllkgl........tvvisPLisLmkDqvdqLraaGveaaalnst..lsakeaqeilkalaagel 104
q+++i + ++++v+a+ tG Gk + +P L l +v+isP L ++ + + +n + + ++ ++ +++l++++
MMSYN1_0410 27 IQQKVIPLLKKHQNVIALAHTGTGKTHSFLLPILNNLKLeendnyvqAVIISPTRELSLQIYQNTKLFLKNNPLINCNlfIGGEDISKNIEQLEKKQP 124
699*****************************885322212222334899***97665554455555555566677762156788999999******* PP
TIGR01389 105 klLYvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkapvialtatadae....vredivekLelkdaaefvssfdR 198
+++ +P rl++ + l+ l+ ++ + + +De + G ++Y l++++++ ++ + + at ++ ++ i++ ++d+++ +s+ +
MMSYN1_0410 125 HIVIGTPTRLKELYDLNKLRLTTTSYFIIDECDMIFDLGFIEDVDY--LISKINQ--DVTIGIFSATISQQlsvfCKKYIKNAHFIDDSQNKISTSNV 218
*************************************997655665..4444433..33344456666555222257888888888888888877766 PP
TIGR01389 199 enlafsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgieal.aYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRf 295
+ + k+++ ++ l++ +++ ++ ii+ + +++++++ e L++++i+ + h+ l+ + R ++k ++++ k +vat G+d v +
MMSYN1_0410 219 KHVLIDT-KNKELEQSLIQIINSINPFLCIIFVNQKDEINKIVEILHKNNIKQVaELHGNLQPRLRLSMLKKIQNNEFKYLVATDVASRGVDIKGVSH 315
6665554.444556789999999999************************9765179***************************************** PP
TIGR01389 296 vihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrlieeseasedrkqieskkLdel 360
+i ++lP +l y +GR GR+ + ++y+ ++ + ++li+++ e +k i+++ +d
MMSYN1_0410 316 IISINLPSDLTYYIHRSGRTGRNNSTGYSYIIYNLKNKTQIEELIKKGIEFETKKLIDNQLVDIK 380
**********************************************9887777776666544444 PP
>> TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 50.5 10.4 5e-17 3.2e-14 15 419 .. 27 440 .. 19 450 .. 0.72
Alignments for each domain:
== domain 1 score: 50.5 bits; conditional E-value: 5e-17
TIGR00614 15 vqlevinavlegrdalvvmatGgGksLCyqlpavvsdgl........tlvisPLi..sLmeDqvlqLkasdisatlLnsaqskeeakevladlkdgkl 102
q++vi + ++++ + tG Gk + lp + +l +++isP + sL q ++L ++ + n e+ ++ ++l + +
MMSYN1_0410 27 IQQKVIPLLKKHQNVIALAHTGTGKTHSFLLPILNNLKLeendnyvqAVIISPTRelSLQIYQNTKLFLKNNPLINCNLFIGGEDISKNIEQLEKKQP 124
68999988888888999999************998766533344444699***973366666777776666554444444455555556788999999 PP
TIGR00614 103 kllYvtPekvsksksllqkleerkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssv....reDilklLklkkpqvtitsf 196
+++ tP ++ + l+kl ++ + +++De i + G +d l s ++ +v++ +at s+++ ++ i + + + q i++
MMSYN1_0410 125 HIVIGTPTRLKEL-YDLNKL-RLTTTSYFIIDECDMIFDLGF--IEDVDYLISKINQ--DVTIGIFSATISQQLsvfcKKYIKNAHFIDDSQNKIST- 215
9999****99776.556888.7788899**********9995..5555444333232..45565667777766511224555555666666666655. PP
TIGR00614 197 dRpnlkyeve.ekkskiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaa.YhagleesarkevqkkflrdeiqvvvatvafGmGink 292
n+k + k+ ++ + l + i+ + ii+ + + +++++ + L+k++++ a h +l+ + r ++ kk +++e + +vat G++
MMSYN1_0410 216 --SNVKHVLIdTKNKELEQSLIQIINSINPFLC-IIFVNQKDEINKIVEILHKNNIKQVAeLHGNLQPRLRLSMLKKIQNNEFKYLVATDVASRGVDI 310
..4565554404444688888999997777777.**********************876538***************************999****** PP
TIGR00614 293 pdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdek.kreyklkl......lekvekyensskCRRlillsyfeekq 383
v ++i +lp ++ Y sGR GR++ + + ++y+ ++ +++++l+ + + + k+ + ++l ++kv+ +++ + ++++ +++k+
MMSYN1_0410 311 KGVSHIISINLPSDLTYYIHRSGRTGRNNSTGYSYIIYNLKNKTQIEELIKKGIEFEtKKLIDNQLvdiktnYKKVKVFKELDAESK-QVINKYKNKK 407
*************************************************98754433233344333111111677777777766555.5566677788 PP
TIGR00614 384 lkkasskkgteksCdnCkkrldyktkdvedkvkdli 419
+k+++ kk ++ d k++ +k+++++ +++
MMSYN1_0410 408 VKPNYKKKR-KQELDKIKQKIR--RKHIKENIEKIK 440
988887554.445565554444..444444444443 PP
>> TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.2 0.0 3.7e-07 0.00024 28 155 .. 41 172 .. 23 187 .. 0.77
2 ! 17.9 2.4 4.5e-07 0.00029 250 423 .. 198 377 .. 171 405 .. 0.80
Alignments for each domain:
== domain 1 score: 18.2 bits; conditional E-value: 3.7e-07
TIGR04095 28 ilkma.tGtGktltaLalvskl...aekikslvvvvvvPykhLveqWakeaekFglepilayesvsrWqkelsekleelsskakkllliittnatlke 121
++++a tGtGkt L + + +e+ + + v++ P ++L q +++++ F + l + + + +s+++e+l ++k+ +++i t + lke
MMSYN1_0410 41 VIALAhTGTGKTHSFLLPILNNlklEENDNYVQAVIISPTRELSLQIYQNTKLFLKNNPLINCNLFIGGEDISKNIEQL--EKKQPHIVIGTPTRLKE 136
445544*******9987654332547777778899*******************87766666777788999******96..5678899********** PP
TIGR04095 122 ekFqsqlrllkkkllli..aDeahnlGakrlkealp 155
+++lrl +++ ++i +D + +lG + + l
MMSYN1_0410 137 LYDLNKLRLTTTSYFIIdeCDMIFDLGFIEDVDYLI 172
999****99998777775555566677665555555 PP
== domain 2 score: 17.9 bits; conditional E-value: 4.5e-07
TIGR04095 250 LLikRarligsaenklk..aLkkllskreees..ktlvYcgdgkte...dekeeeerqidevvkllgeelglrvktftaeeskeeReellkqfesgel 340
ik a++i++ +nk++ ++k++l ++++ + l+ + + + + +++ +i+++v++l ++ +v++ + + + R ++lk+++++e+
MMSYN1_0410 198 KYIKNAHFIDDSQNKIStsNVKHVLIDTKNKEleQSLIQIINSINPflcIIFVNQKDEINKIVEILHKNNIKQVAELHGNLQPRLRLSMLKKIQNNEF 295
56999**********9622588888655444434899999987776766677899999********99999999999999999*************** PP
TIGR04095 341 qalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRkspGkeraeiyDfivvPpkeadeledkefeve.rsllkrelk 423
+ lva GvD+ + + + + s+ +i R GR R++ iy++ +++++el +k +e+e ++l+ ++l
MMSYN1_0410 296 KYLVATDVASRGVDIKGVSHIISINLPSDLTYYIHRSGRTGRNNSTGYSYIIYNLKN--KTQIEELIKKGIEFEtKKLIDNQLV 377
*******************999999999999********988877666667777643..3456666666677663567777765 PP
>> TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.2 0.0 7.1e-06 0.0045 36 140 .. 23 134 .. 8 164 .. 0.66
2 ! 11.4 0.0 2.5e-05 0.016 303 375 .. 268 340 .. 246 349 .. 0.84
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 7.1e-06
TIGR03817 36 apwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed...pratalylaPtkalaadqlravkelee..rdvraatydG..dtpaeerewi 126
ap + q ++ l ++ ++v+ + t +Gk+ ++llP+l+ l+ + +a+ ++Pt+ l+ ++ k + + ++ + G d +++ +
MMSYN1_0410 23 APTSIQQKVIPLLKKHQNVIALAHTGTGKTHSFLLPILNNLKLEendNYVQAVIISPTRELSLQIYQNTKLFLKnnPLINCNLFIGgeDISKNIEQLE 120
67778888889999999999999****************998663335778999*****998765554443333222334444444224445555556 PP
TIGR03817 127 rekaryvltnPdml 140
+++ ++v+ P l
MMSYN1_0410 121 KKQPHIVIGTPTRL 134
66666666666555 PP
== domain 2 score: 11.4 bits; conditional E-value: 2.5e-05
TIGR03817 303 aervaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgq 375
++va + + r + +++++ e++ ++at+ Gvdi G+ ++ P ++ + ++Gr+Gr+
MMSYN1_0410 268 IKQVAELHGNLQPRLRLSMLKKIQNNEFKYLVATDVASRGVDIKGVSHIISINLPSDLTYYIHRSGRTGRNNS 340
467777777777788889999*************************************************876 PP
>> TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.1 0.1 3.5e-06 0.0023 14 64 .. 38 96 .. 28 225 .. 0.80
2 ! 5.5 0.1 0.0029 1.9 259 355 .. 230 334 .. 219 336 .. 0.70
Alignments for each domain:
== domain 1 score: 15.1 bits; conditional E-value: 3.5e-06
TIGR03158 14 advllntAptGaGKtlaalvevls....eeldt....ialyPtNaLiedqekaikelvd 64
++ ++ +A tG+GKt++ l+++l+ ee+d + + Pt +L + +++ k ++
MMSYN1_0410 38 HQNVIALAHTGTGKTHSFLLPILNnlklEENDNyvqaVIISPTRELSLQIYQNTKLFLK 96
4567899************9987633335666688888889************999983 PP
== domain 2 score: 5.5 bits; conditional E-value: 0.0029
TIGR03158 259 laeevlerfdqlsgergaiildslaevkrlsellreqelglqvgritGlakkk......ekeralsfdillgtsavdvGvdFktdfliFs...asdaa 347
l + +++ ++ +i ++ +e++++ e+l++++ qv + G + +k + ++f+ l++t Gvd k+ i s sd +
MMSYN1_0410 230 LEQSLIQIINSINPFLCIIFVNQKDEINKIVEILHKNNIK-QVAELHGNLQPRlrlsmlKKIQNNEFKYLVATDVASRGVDIKGVSHIISinlPSDLT 326
55556666666666677899999************77766.9***99965432111111233468999**************9874444411246777 PP
TIGR03158 348 eFlqRlGR 355
++ R GR
MMSYN1_0410 327 YYIHRSGR 334
78888887 PP
>> TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.3 0.0 0.06 38 14 41 .. 35 62 .. 26 81 .. 0.84
2 ! 13.6 0.1 5.8e-06 0.0037 142 288 .. 173 318 .. 152 336 .. 0.75
Alignments for each domain:
== domain 1 score: 0.3 bits; conditional E-value: 0.06
TIGR01970 14 laakpqvvLeappGaGkstalPLalLda 41
l+ +++v+ a +G Gk+ + L +L++
MMSYN1_0410 35 LKKHQNVIALAHTGTGKTHSFLLPILNN 62
678999*************999999876 PP
== domain 2 score: 13.6 bits; conditional E-value: 5.8e-06
TIGR01970 142 salreDLkilimsatLdger...lselldeapvve.seGrsfPveirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLae.rl 234
s++ +D+ i i sat++++ ++ +++a ++ s+ + ++++ ++++++ ++ ++ +++ ++ ++f+ + ei+++ e L++ ++
MMSYN1_0410 173 SKINQDVTIGIFSATISQQLsvfCKKYIKNAHFIDdSQNKISTSNVKHVLIDTKNKELEQSLIQIINSI--NPFLCIIFVNQKDEINKIVEILHKnNI 268
677889999999999988632224567777877743777777777777776655543333333333333..3445789**************984134 PP
TIGR01970 235 dasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviD 288
+ +++ L+G+l+ + +k + k +at++a + i+Gv +i
MMSYN1_0410 269 K----QVAELHGNLQPRLRLSMLKKIQNNEFKYLVATDVASRGVDIKGVSHIIS 318
4....899*****************************************98886 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (453 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 661 (0.147282); expected 89.8 (0.02)
Passed bias filter: 96 (0.0213904); expected 89.8 (0.02)
Passed Vit filter: 15 (0.00334225); expected 4.5 (0.001)
Passed Fwd filter: 7 (0.00155971); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.21u 0.40s 00:00:00.61 Elapsed: 00:00:00.65
# Mc/sec: 1000.81
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0410 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0411 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0411.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0411/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0411 [L=504]
Description: membrane protein, PF02588 family 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (504 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 261 (0.0581551); expected 89.8 (0.02)
Passed bias filter: 66 (0.0147059); expected 89.8 (0.02)
Passed Vit filter: 2 (0.000445633); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 3446.50
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0411 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0412 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0412.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0412/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0412 [L=1384]
Description: secDF 4=Probable Protein export
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-15 55.6 52.2 7.7e-15 53.1 14.0 3.6 4 TIGR00916 2A0604s01: protein-export membrane protein, SecD/S
9e-12 42.8 11.8 9e-12 42.8 11.8 5.1 6 TIGR01129 secD: protein-export membrane protein SecD
1.8e-09 35.7 29.7 5.6e-07 27.5 9.3 5.6 5 TIGR00966 3a0501s07: protein-export membrane protein SecF
------ inclusion threshold ------
0.65 8.3 0.0 0.65 8.3 0.0 3.9 3 TIGR02230 ATPase_gene1: putative F0F1-ATPase subunit
Domain annotation for each model (and alignments):
>> TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -4.1 0.3 2.1 2.3e+03 139 154 .. 16 31 .. 9 33 .. 0.76
2 ! 53.1 14.0 6.9e-18 7.7e-15 53 225 .. 479 651 .. 429 657 .. 0.87
3 ! 17.5 11.4 5.2e-07 0.00058 92 180 .. 1091 1181 .. 1084 1188 .. 0.83
4 ? 2.3 4.9 0.023 26 191 229 .. 1303 1340 .. 1280 1342 .. 0.71
Alignments for each domain:
== domain 1 score: -4.1 bits; conditional E-value: 2.1
TIGR00916 139 ltlagiagllliiGys 154
+ l i +ll+ iG+s
MMSYN1_0412 16 IVLILILALLTGIGFS 31
5567789999999988 PP
== domain 2 score: 53.1 bits; conditional E-value: 6.9e-18
TIGR00916 53 eardLallLrsgalpapikileertvgptlGeelikkgllallialvlvllylllrYellgaiaaiallvhdvilivgvlsllgaeltlagiagllli 150
a+++ + + +l ++k+l+ + ++ + ++ l l+i ++vl+++l++Y+llg++a i++ ++ + l++ v ++++ + +++ + + +
MMSYN1_0412 479 MAKQVESDILQTSLGFTFKVLSIKEFSADITTIMLIITLACLVILALAVLVFMLFSYRLLGLFAIILAAIS-ASLTMFVPIIFNMAIGPEIFMIMFVG 575
56666666666777777777777777777777777777888899999************************.9999999******************* PP
TIGR00916 151 iGysvddtVvifeRireelr.egrtvaeaielginralsriidtnvttllavliLyvlgtgaikgfaltlliGviv 225
iG+ +d+++++fe ++ + e+ + ++ ++ + +++l ++dt+++ l+++++L+++g+ga+k++a+ +i +++
MMSYN1_0412 576 IGLILDASIIYFENLKTHIYkEKLSPESSFKISNKDTLPISLDTSFIILIPSVLLFIFGSGALKNLATISVINILI 651
*******************98999*******************************************999998876 PP
== domain 3 score: 17.5 bits; conditional E-value: 5.2e-07
TIGR00916 92 lallialvlvllylllrYellgaiaaiallvhdvilivgvlsllgaeltlagiagllliiGysvddtVvifeRireelr..egrtvaeaie 180
+ +i+l++ l+y+l+r+++ +++a ++l+ ++l+ ++++++++ + +++ ++l ++ +++ V++ + + ++ ++t++e++e
MMSYN1_0412 1091 IIFAITLLALLVYILIRFKWTYFVALALTLILVIVLVSSLVVIFRVPVGIEILSAILAVLSFTIITCVLFLGKGKSIIKskDNKTFTEMFE 1181
567899***********************9995666777778888*******************999999888777777666666666655 PP
== domain 4 score: 2.3 bits; conditional E-value: 0.023
TIGR00916 191 idtnvttllavliLyvlgtgaikgfaltlliGvivgvys 229
+ +v la +i++ +g ai g+ lt++iG+++ +
MMSYN1_0412 1303 VLITV-IYLAYAIILSFGLYAIIGMGLTIIIGILIASLV 1340
32222.246788888999999999999999999876554 PP
>> TIGR01129 secD: protein-export membrane protein SecD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.6 0.1 0.24 2.7e+02 118 183 .. 154 218 .. 78 229 .. 0.63
2 ! 42.8 11.8 8e-15 9e-12 210 396 .. 476 663 .. 416 664 .. 0.87
3 ? -2.4 2.0 0.42 4.7e+02 101 146 .. 767 823 .. 701 877 .. 0.53
4 ? -10.5 13.1 4 4.5e+03 252 294 .. 1091 1134 .. 1083 1163 .. 0.68
5 ? -1.6 0.8 0.24 2.6e+02 102 172 .. 1189 1256 .. 1162 1267 .. 0.64
6 ? -4.1 6.7 1.4 1.6e+03 357 392 .. 1309 1344 .. 1299 1349 .. 0.80
Alignments for each domain:
== domain 1 score: -1.6 bits; conditional E-value: 0.24
TIGR01129 118 ksaekeekalllkksi..vltgdkitdatssvdqrsgqpvvsleldeegaeifadltaanigkrlAiv 183
+s +k+ + l+ ++ ++++++ a+ s + + p vs++l++++ + + d +++ ++ l ++
MMSYN1_0412 154 SSSDKRVAKKLTLEEFlgEAKAESLQPANFSNK---NSPFVSFNLKNDYLKNLIDPKKNKDNNALTMI 218
333333323333232233556667777766554...579*********99999998888877755544 PP
== domain 2 score: 42.8 bits; conditional E-value: 8e-15
TIGR01129 210 taeeAkdlalvLrsgaLpakleileertvgpsLGadsieaglkAgliglvlvlvfmllyYrllGlvaalalvinvvlilavlsllgatLtLpgiAgli 307
+ Ak++ + + +L + +++l+ + ++ + + + +l +i ++vlvfml++YrllGl+a + i+ l++ v ++++ + +
MMSYN1_0412 476 SNTMAKQVESDILQTSLGFTFKVLSIKEFSADITTIMLIITLACLVILALAVLVFMLFSYRLLGLFAIILAAISASLTMFVPIIFNMAIGPEIFMIMF 573
5567888888888889999999999999999999999999999999999******************9988888877777777777777755555677 PP
TIGR01129 308 LtiGmavDanvlifERikeelreGk.svksaieaGferalstildanittllaalvLyvlgtGavkGFAltlaigviaslftalvvtrll 396
++iG+ Da ++ fE +k + + k s +s+++ + +l ld+ l+ +++L+++g+Ga k A+ +i +++ ++ +++ rll
MMSYN1_0412 574 VGIGLILDASIIYFENLKTHIYKEKlSPESSFKISNKDTLPISLDTSFIILIPSVLLFIFGSGALKNLATISVINILIIILFVILGLRLL 663
9*******************97665499***************************************************99999999987 PP
== domain 3 score: -2.4 bits; conditional E-value: 0.42
TIGR01129 101 k.......sedalageeeadklllksaekeek.alllkksi....vltgdkitdatss 146
+ ++++++++++a k l+k++++e k ++llk + +++ +++t+++ +
MMSYN1_0412 767 NkyeiylnKQEQINNNKKA-KILKKKKSEEIKnKYLLKLENkkqkIINKNSFTKSSIK 823
0222222233334444332.33333333322234554433322224444444444333 PP
== domain 4 score: -10.5 bits; conditional E-value: 4
TIGR01129 252 kAgliglvlvlvfmllyYrllGlva.alalvinvvlilavlsll 294
+ +i l+++lv++l+ ++++ +va al+l++ +vl+ ++ ++
MMSYN1_0412 1091 IIFAITLLALLVYILIRFKWTYFVAlALTLILVIVLVSSLVVIF 1134
4557889999*********9999883455555555554444443 PP
== domain 5 score: -1.6 bits; conditional E-value: 0.24
TIGR01129 102 sedalageeea.dklllksaekeekalllkksivltgdkitdatssvdqrsgqpvvsleldeegaeifadlt 172
+++a+++++++ +++l++++++++ + l+k++i + ++i+ s++ + +++++l+++++ ++++d+
MMSYN1_0412 1189 NKKATRHQVHEkNHQLKVEYKTNK-KNLIKQQI--EQNNIKSWWSKIFFKL-KQNIKLRFNKKDNSMYKDFK 1256
334444444432555555665554.78888887..9999999999988655.88999999999999999885 PP
== domain 6 score: -4.1 bits; conditional E-value: 1.4
TIGR01129 357 llaalvLyvlgtGavkGFAltlaigviaslftalvv 392
la +++ +g a+ G lt++ig+++ +++l++
MMSYN1_0412 1309 YLAYAIILSFGLYAIIGMGLTIIIGILIASLVSLFI 1344
4778888999****************8776666665 PP
>> TIGR00966 3a0501s07: protein-export membrane protein SecF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.7 0.5 0.21 2.3e+02 140 164 .. 7 31 .. 5 34 .. 0.84
2 ! 23.7 12.4 7.3e-09 8.2e-06 37 233 .. 455 647 .. 397 653 .. 0.83
3 ! 4.8 0.8 0.0043 4.8 18 86 .. 775 861 .. 721 937 .. 0.57
4 ! 27.5 9.3 5e-10 5.6e-07 92 193 .. 1082 1182 .. 1012 1188 .. 0.81
5 ? 1.9 6.8 0.034 38 199 246 .] 1299 1345 .. 1287 1345 .. 0.90
Alignments for each domain:
== domain 1 score: -0.7 bits; conditional E-value: 0.21
TIGR00966 140 gvlalfglevnsatvaalLtiiGYS 164
++ ++++ + + + alLt iG+S
MMSYN1_0412 7 SFKKVLRFIIVLILILALLTGIGFS 31
66678888899999**********9 PP
== domain 2 score: 23.7 bits; conditional E-value: 7.3e-09
TIGR00966 37 egvkvvevlseesvlirasvleeeqseevrekvv.eelkrekfdvevakedavgprvseelvrkavlallvalvlillYvalrfewrfalgaivaLvh 133
+ ++v+ ++++++ + ++v +++ ++v++++ ++l f ++v +++ ++ + + + ++ l++ +++l+++ + +++ ++l+ai+ +
MMSYN1_0412 455 TNPAIVTDRKTQTTKLYIPVWSNTMAKQVESDILqTSLG---FTFKVLSIKEFSADITTIMLIITLACLVILALAVLVFMLFSYRL-LGLFAIILAAI 548
444555555678888888888888888887765514555...88888999999999999888888888889999999999999997.67888887788 PP
TIGR00966 134 DviitvgvlalfglevnsatvaalLtiiGYSinDtvvvfDrvrenllkkkratvtevldlsinqtLtRtivTsvttllavlallvfgekvlkdfslal 231
+ +t+ v ++f++ + +++ + +++ iG + +++ f ++ ++ k+k + + + +s +tL ++ Ts + l++ + l++fg+++lk+++
MMSYN1_0412 549 SASLTMFVPIIFNMAIGPEIFMIMFVGIGLILDASIIYFENLKTHIYKEK-LSPESSFKISNKDTLPISLDTSFIILIPSVLLFIFGSGALKNLATIS 645
9999******************9*********************999875.678999***********************************998766 PP
TIGR00966 232 lv 233
++
MMSYN1_0412 646 VI 647
65 PP
== domain 3 score: 4.8 bits; conditional E-value: 0.0043
TIGR00966 18 iekaievaevkdvlek.............aelegvkvvevls.....eesvlirasvleeeqseevrekvveelkrekfdvevaked 86
+++i+ ++ ++l+k e +++k+ +++s ++ li++++l+ +++ ++v e+l++++++ ++ k++
MMSYN1_0412 775 KQEQINNNKKAKILKKkkseeiknkyllkLENKKQKIINKNSftkssIKNSLIKQEFLQARINSNTSSQVLETLENKNKQRRIFKIN 861
233444444444444422222222333222222222222222333323444444444444455555555555555555555554444 PP
== domain 4 score: 27.5 bits; conditional E-value: 5e-10
TIGR00966 92 vseelvrkavlallvalvlillYvalrfewrfalgaivaLvhDviitvgvlalfglevnsatvaalLtiiGYSinDtvvvfDrvrenllkkkratv 187
+e+++ a++ ++l+++l+Y+ +rf+w++ ++ ++L+ ++++ +++++f++ v +++ a+L+++ + i v+ + + +++k ++t+
MMSYN1_0412 1082 AYGEIKNIAII-FAITLLALLVYILIRFKWTYFVALALTLILVIVLVSSLVVIFRVPVGIEILSAILAVLSFTIITCVLFLGKGKSIIKSKDNKTF 1176
44555555554.56789999*******************************************************999999999999999999999 PP
TIGR00966 188 tevldl 193
te++++
MMSYN1_0412 1177 TEMFEK 1182
999876 PP
== domain 5 score: 1.9 bits; conditional E-value: 0.034
TIGR00966 199 LtRtivTsvttllavlallvfgekvlkdfslallvGvvvGtySsifiA 246
++Rt++ +v+ la ++l fg ++ ++ l++++G+++ s+fiA
MMSYN1_0412 1299 ISRTVLITVIY-LAYAIILSFGLYAIIGMGLTIIIGILIASLVSLFIA 1345
68999999885.67888889**************************98 PP
>> TIGR02230 ATPase_gene1: putative F0F1-ATPase subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.3 0.0 0.00058 0.65 15 85 .. 831 901 .. 817 907 .. 0.71
2 ? -2.1 1.3 1 1.2e+03 55 91 .. 1095 1131 .. 1080 1137 .. 0.75
3 ? -2.0 3.0 0.91 1e+03 40 66 .. 1324 1350 .. 1313 1357 .. 0.76
Alignments for each domain:
== domain 1 score: 8.3 bits; conditional E-value: 0.00058
TIGR02230 15 plekrvgakeerkl.k..arkdadrsvwlglgmlgligwsvaiptllgvalgiwldkhypssfswtltllivgv 85
l+ r++++ + ++ + +k+ +r ++ ++ +i i t+lg+ +gi + +y ssf + ++ g
MMSYN1_0412 831 FLQARINSNTSSQVlEtlENKNKQRRIFKINKIFTII---FIICTFLGAIIGITIGPNYNSSFGKSYSVIAYGQ 901
5566665544433313113566777777777777776...6799*******************99988887775 PP
== domain 2 score: -2.1 bits; conditional E-value: 1
TIGR02230 55 ptllgvalgiwldkhypssfswtltllivgvvvgcln 91
tll + + i + ++ + +ltl++v v+v l
MMSYN1_0412 1095 ITLLALLVYILIRFKWTYFVALALTLILVIVLVSSLV 1131
3788888888888888888888888888888887775 PP
== domain 3 score: -2.0 bits; conditional E-value: 0.91
TIGR02230 40 lglgmlgligwsvaiptllgvalgiwl 66
+g+g+ +ig +a l +al iw+
MMSYN1_0412 1324 IGMGLTIIIGILIASLVSLFIALPIWI 1350
678888888888887777778887775 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1384 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 740 (0.164884); expected 89.8 (0.02)
Passed bias filter: 48 (0.0106952); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.24
# Mc/sec: 8281.18
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0412 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0413 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0413.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0413/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0413 [L=170]
Description: apt: adenine phosphoribosyltransferase 5=Equivalog Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-58 196.1 1.7 1.2e-58 195.9 1.7 1.0 1 TIGR01090 apt: adenine phosphoribosyltransferase
1.2e-13 48.6 0.4 2e-13 47.9 0.3 1.4 1 TIGR01743 purR_Bsub: pur operon repressor PurR
1.3e-12 45.7 0.2 1.6e-12 45.4 0.2 1.1 1 TIGR01744 XPRTase: xanthine phosphoribosyltransferase
1.6e-12 45.5 1.5 4.7e-12 44.0 1.5 1.6 1 TIGR00336 pyrE: orotate phosphoribosyltransferase
9.4e-12 42.9 0.3 3.5e-10 37.8 0.3 2.0 1 TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
1.8e-07 28.3 0.2 2.1e-07 28.1 0.2 1.1 1 TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
4.6e-05 21.1 0.1 7.1e-05 20.5 0.1 1.3 1 TIGR01091 upp: uracil phosphoribosyltransferase
5.7e-05 20.9 0.9 7.2e-05 20.6 0.2 1.5 2 TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
0.00032 18.7 0.1 0.00052 18.0 0.1 1.3 1 TIGR00201 comF: comF family protein
Domain annotation for each model (and alignments):
>> TIGR01090 apt: adenine phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 195.9 1.7 2.4e-61 1.2e-58 1 169 [] 3 170 .] 3 170 .] 0.97
Alignments for each domain:
== domain 1 score: 195.9 bits; conditional E-value: 2.4e-61
TIGR01090 1 lkqairkipdfPkkGilFrDitpllenaelfrllidqlverlkeakidlvvgleaRGFifgaalalklgvgfvpvRkkgkLpaetvsasYdlEYgkdk 98
lk+ + +++dfPk+Gi+F+Ditpll+n+++f+++idq++ ++k+ ++d+vv++eaRGF++++a+a++ + fv+vRk++kLp+e+ ++Y+lEYg+++
MMSYN1_0413 3 LKEFVVDVKDFPKQGIVFKDITPLLNNKDAFKYTIDQMADFVKKLDVDVVVAPEARGFLLASAVAYAANKRFVLVRKPNKLPREVYDVEYSLEYGTNH 100
688999******************************************************************************************** PP
TIGR01090 99 leihkdalkkgkrvlivDDllAtgGtveAaleLikklgaevveaaflielkklkgrkkleekvkvfslley 169
+ih+ lk++++v+++DD+lAtgGt++A+++L+k +aev++++fli+l+ l+ +l +++kv l++y
MMSYN1_0413 101 QQIHVGDLKPNDKVVVIDDVLATGGTMQAIIDLVKLSKAEVIGMSFLIDLTFLHD-VNLFDQYKVQKLIKY 170
******************************************************9.677777999999876 PP
>> TIGR01743 purR_Bsub: pur operon repressor PurR
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.9 0.3 4e-16 2e-13 120 244 .. 40 162 .. 20 169 .. 0.81
Alignments for each domain:
== domain 1 score: 47.9 bits; conditional E-value: 4e-16
TIGR01743 120 lasvfaekeidavvtvetkGvPlayavakvlnvslvivrkdskvteGstvsinyvsGssdriqkmslakrslkkGskvllvddflkaGGtvkGliell 217
+a ++ ++d+vv+ e++G la ava n +v+vrk +k+ + ++y + q++ + lk kv+++dd l +GGt++ +i+l+
MMSYN1_0413 40 MADFVKKLDVDVVVAPEARGFLLASAVAYAANKRFVLVRKPNKLPRE-VYDVEYSLEYGTNHQQIHVG--DLKPNDKVVVIDDVLATGGTMQAIIDLV 134
566677789**********************************9764.45667765555555666654..79************************** PP
TIGR01743 218 eefdaelvGigvlidne.eeeeklvddy 244
+ +ae++G++ lid ++ +l d+y
MMSYN1_0413 135 KLSKAEVIGMSFLIDLTfLHDVNLFDQY 162
**************96513444555555 PP
>> TIGR01744 XPRTase: xanthine phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.4 0.2 3.2e-15 1.6e-12 40 159 .. 38 153 .. 13 167 .. 0.83
Alignments for each domain:
== domain 1 score: 45.4 bits; conditional E-value: 3.2e-15
TIGR01744 40 eefarrfadkgitkiltieasGiaPaimtalkldvPvvfakkkkpltltdqlltasvvsftkskestvivskeflsdedrvliiddflanGdaarglv 137
+++a+ ++ + +++ ea G a +a+ + v ++k p+ l ++++ + ++++++ v + l ++d+v++idd la+G+++++++
MMSYN1_0413 38 DQMADFVKKLDVDVVVAPEARGFLLASAVAYAANKRFVLVRK--PNKLPREVYDVEYSLEYGTNHQQIHVGD--LKPNDKVVVIDDVLATGGTMQAII 131
45566677888999999*****99999999999999999886..7889999999875554555556666654..9*********************** PP
TIGR01744 138 divkqagakivGlGivieksfq 159
d+vk + a+++G+ ++i+ +f
MMSYN1_0413 132 DLVKLSKAEVIGMSFLIDLTFL 153
*****************98885 PP
>> TIGR00336 pyrE: orotate phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.0 1.5 9.4e-15 4.7e-12 24 147 .. 19 150 .. 14 170 .] 0.84
Alignments for each domain:
== domain 1 score: 44.0 bits; conditional E-value: 9.4e-15
TIGR00336 24 yyvdlklantgkelanliaeliaalvkdelefdviaGpalkgiPiaaavsvklakpegdiqllivRkeaK............dhGeggk..ivGelke 107
++ d+ +k+ + +a+ vk+ l++dv+ p+ g +a+av+ +++k+ +++vRk +K ++G++ + vG+lk+
MMSYN1_0413 19 VFKDITPLLNNKDAFKYTIDQMADFVKK-LDVDVVVAPEARGFLLASAVAYAANKR-----FVLVRKPNKlprevydveyslEYGTNHQqiHVGDLKP 110
6777777788888888889999999996.***************************.....99999988876666666666679*97652258***** PP
TIGR00336 108 gkkvvvveDvittGtsileaveaiqeagaevagvivvldr 147
++kvvv++Dv++tG+ ++ + ++ ++aev g+ ++d
MMSYN1_0413 111 NDKVVVIDDVLATGGTMQAIIDLVKLSKAEVIGMSFLIDL 150
*******************************999887775 PP
>> TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.8 0.3 6.9e-13 3.5e-10 27 144 .. 19 150 .. 13 166 .. 0.80
Alignments for each domain:
== domain 1 score: 37.8 bits; conditional E-value: 6.9e-13
TIGR01367 27 vylqsakllekPklaeklgeelakkilkaklevdvivsPalGGvilgyevaralsvrsifaereng........emklrrgfe........vkpGekv 108
v+ + ll++ + + +++a ++k +vdv+v+P G +l+ va a ++r++ + + n+ e+ l g + +kp +kv
MMSYN1_0413 19 VFKDITPLLNNKDAFKYTIDQMADFVKKL--DVDVVVAPEARGFLLASAVAYAANKRFVLVRKPNKlprevydvEYSLEYGTNhqqihvgdLKPNDKV 114
66677778888888889999999999877..************************999999998864444333334454432122222333799**** PP
TIGR01367 109 vvveDvvttGgsakeaikiieelGgqvvglaaiidr 144
vv++Dv++tGg+++ i +++ ++v+g++ +id
MMSYN1_0413 115 VVIDDVLATGGTMQAIIDLVKLSKAEVIGMSFLIDL 150
*********************************995 PP
>> TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.1 0.2 4.1e-10 2.1e-07 148 241 .. 39 142 .. 19 168 .. 0.79
Alignments for each domain:
== domain 1 score: 28.1 bits; conditional E-value: 4.1e-10
TIGR01251 148 klieelkkkelknlvvvsPDkGaverakkvakklglelaiieKeRds.............kenevevtnllgdvegkdvvivDDiisTggTlvkaael 232
++++ +kk l+ vvv+P + + a++va ++++ +++++K + +n+ +++ ++ ++ +vv++DD+++TggT+ + ++l
MMSYN1_0413 39 QMADFVKK--LDVDVVVAPEARGFLLASAVAYAANKRFVLVRKPNKLprevydveysleyGTNHQQIHVGDLKPND-KVVVIDDVLATGGTMQAIIDL 133
33444443..8899*****************************887778889999998765555555554555555.68899**********999999 PP
TIGR01251 233 LkekGAkkv 241
+k A+ +
MMSYN1_0413 134 VKLSKAEVI 142
988877765 PP
>> TIGR01091 upp: uracil phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.5 0.1 1.4e-07 7.1e-05 118 154 .. 107 143 .. 90 151 .. 0.84
Alignments for each domain:
== domain 1 score: 20.5 bits; conditional E-value: 1.4e-07
TIGR01091 118 edieerevivlDPmlAtGgtvvealellkekgakkik 154
+ + +++v+v+D lAtGgt+ ++++l+k ++a+ i
MMSYN1_0413 107 DLKPNDKVVVIDDVLATGGTMQAIIDLVKLSKAEVIG 143
5667889*********************998876654 PP
>> TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.8 0.0 2.1 1.1e+03 117 120 .. 36 39 .. 7 54 .. 0.51
2 ! 20.6 0.2 1.4e-07 7.2e-05 85 132 .. 111 158 .. 92 167 .. 0.82
Alignments for each domain:
== domain 1 score: -2.8 bits; conditional E-value: 2.1
TIGR01203 117 kivt 120
+i
MMSYN1_0413 36 TIDQ 39
3322 PP
== domain 2 score: 20.6 bits; conditional E-value: 1.4e-07
TIGR01203 85 dkdvLlveDivdtgltlkellellkarkpkslkivtlleKpsrrkvdv 132
+ +v++++D+++tg t++ +++l+k k++ + + l++ + ++v++
MMSYN1_0413 111 NDKVVVIDDVLATGGTMQAIIDLVKLSKAEVIGMSFLIDLTFLHDVNL 158
567999**************************9999999777776666 PP
>> TIGR00201 comF: comF family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.0 0.1 1e-06 0.00052 152 183 .. 111 142 .. 91 148 .. 0.85
Alignments for each domain:
== domain 1 score: 18.0 bits; conditional E-value: 1e-06
TIGR00201 152 grkivlvDDvvttGatlaeiaklllklgaaev 183
k+v++DDv+ tG t++ i +l+ +a+ +
MMSYN1_0413 111 NDKVVVIDDVLATGGTMQAIIDLVKLSKAEVI 142
569*******************9988888765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (170 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 171 (0.0381016); expected 89.8 (0.02)
Passed bias filter: 111 (0.0247326); expected 89.8 (0.02)
Passed Vit filter: 19 (0.00423351); expected 4.5 (0.001)
Passed Fwd filter: 9 (0.00200535); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 9 [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 1220.64
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0413 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0414 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0414.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0414/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0414 [L=754]
Description: relA 4=Probable Regulation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-205 682.3 31.6 2e-205 682.0 31.6 1.1 1 TIGR00691 spoT_relA: RelA/SpoT family protein
0.0087 13.2 0.4 0.028 11.6 0.1 2.0 2 TIGR01508 rib_reduct_arch: diaminohydroxyphosphoribosylamino
Domain annotation for each model (and alignments):
>> TIGR00691 spoT_relA: RelA/SpoT family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 682.0 31.6 9.1e-209 2e-205 1 683 [. 41 742 .. 41 746 .. 0.90
Alignments for each domain:
== domain 1 score: 682.0 bits; conditional E-value: 9.1e-209
TIGR00691 1 AlelakklHeeQkRksGePyiiHPlavalllaelglDeetviAaLLHDvvEDTdvteeeieeeFgeevaeLvdgvtKitklkkksrqeaqaetfrkii 98
A+++a k H +Q+Rk G+Pyi HPl a la++++ +t+iA+LLHD++EDT++++ee+ e+F+eeva+Lv+ vtK++ + k++rq + + +rk+
MMSYN1_0414 41 AYKYAFKCHFNQTRKNGDPYIYHPLSAAYYLAQWRMGPNTIIAGLLHDILEDTPIQKEELVELFNEEVANLVESVTKVSFFAKENRQQIKSKYLRKLY 138
89************************************************************************************************ PP
TIGR00691 99 lamaqdirvlviKlaDrlhNmrtleaLpkekqkriaketleiyaplAeRlGissiKteLedlsFkvlypkeYeeikelvkekkksreeklekvksele 196
l+m +dirv++iK+aDrlhN+ t++ L++ekqk+ia+etleiy+ +A+R+G++s K Led sF++l+p+e+++i +l ++ ++r++ ++++ +le
MMSYN1_0414 139 LSMSKDIRVIIIKIADRLHNIYTIKNLRPEKQKIIAQETLEIYSAIAHRIGMKSAKSLLEDRSFEILNPQEFKKITDLFNSDMQNRQQIINEIIINLE 236
************************************************************************************************** PP
TIGR00691 197 keLeksg.ie.aelegRsKhlYsiyqKmtvkeqkleeilDllaiRiivksekdCYkvlgiiHslfkpipgrfKDYIalPkenlYqslhTtvigekgkl 292
+ L+k++ i+ + + gR+K +Ysiy+Km+v ++++eei DllaiRii ks +dCYk+lg iH+ + p++g+fKDYIa+Pk+n+YqslhTt+ + +g+
MMSYN1_0414 237 QYLKKEKnIKiISIFGRPKTIYSIYRKMNVIGKNFEEISDLLAIRIIAKSIDDCYKILGFIHQKYIPLAGKFKDYIATPKNNVYQSLHTTLSDANGNI 334
***986538899************************************************************************************** PP
TIGR00691 293 vEvqIrTedmdevaeyGiaaHWkYKegg....nakkeakaeklrwlrellekqqeskdksefienlksdllneeiyvftpkgevvelpsgatavDfAY 386
EvqIrTe+m++vae G aaHW+YKeg+ +k+++ ek+ ++l+ +++ ++s +++k dl++ +iyv tp+g v++lp g+t +DfAY
MMSYN1_0414 335 FEVQIRTEEMNQVAETGAAAHWRYKEGEiidiAKKQKEIDEKIDIFSRILDLDKSEDQQSSIEQSIKDDLFTASIYVLTPNGAVITLPYGSTVLDFAY 432
**************************777654444555567889999*****9998888888999********************************* PP
TIGR00691 387 avhtdvgdkltgakvngkevaldkelkngdvveiitsknskpkvkWlnfvktskarekirqllkkrkkeeklsegkel..........lekalgeskl 474
++ht++g+k +ga+v+g+ +++++ lk+g+vve+ ts++++p +Wl+ v+ts+ar++i+++l+k+ +ee+l ++ + ++ ++++
MMSYN1_0414 433 RIHTEIGEKTIGARVDGVFLPINTVLKSGEVVEVKTSPKQEPTHEWLKIVVTSNARNRIKKYLQKKINEETLDKKDQQkelirkteanINAYINQKDW 530
*****************************************************************999998876543300000000002222333333 PP
TIGR00691 475 kledltes.iqkrleelklkkleelleeiekkkisskevvkllaeenkk..seaeektlklalskkeleessvvsiegieivkiklakcCspipgdei 569
k +++t + i ++++++ +++l+++l + k++++ +e +++++ +++ +++ +k + ++ + + + ++gi+++k++la+cC pip +e+
MMSYN1_0414 531 KWKKKTADeILETVKTMDYNSLNDFLLDVAKGEFTINEAAEKVFIKQNYskDDEAYASIKSKIIYDTTIK-NDILVDGIKNIKTTLASCCMPIPYEEV 627
32222222477777888*********************99887655444114444444444344444444.4479*********************** PP
TIGR00691 570 igivtkkkklvvHrksCknlknekkekklieveweaskekaqkfeveikiellekkgvlskllkalsenesniesisvkekdkrea.ileitlevkdk 666
+g+vtk++++ vH k+C n+ ++ +++l+ v+w++ + +++++++++k ++++++l ++ k++s +++i+++++ +++k+ + + it+++k++
MMSYN1_0414 628 VGFVTKNNGIKVHLKECINIDWTNMKSRLVVVQWNEAVAEKNTYTTKLKYFGIDRNKLLYDISKIISGLKVSIINANIFTDEKSLLsSGVITIKIKNS 725
*********************999999***************************************************9997766515579******* PP
TIGR00691 667 kqllkimekikkvedvl 683
+ql++ ++++++++++
MMSYN1_0414 726 NQLTQTISALRSIPGIN 742
***********998875 PP
>> TIGR01508 rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.3 0.0 0.22 4.9e+02 94 136 .. 159 201 .. 140 205 .. 0.81
2 ! 11.6 0.1 1.3e-05 0.028 35 88 .. 442 497 .. 435 543 .. 0.77
Alignments for each domain:
== domain 1 score: -2.3 bits; conditional E-value: 0.22
TIGR01508 94 vavseaeseekveelekkgvevvkfgeervdLeklldaleskg 136
+++ ++ ek +++ +++ e+ + +r+ ++++ le+++
MMSYN1_0414 159 IYTIKNLRPEKQKIIAQETLEIYSAIAHRIGMKSAKSLLEDRS 201
5555555559999999999999999999999999999999886 PP
== domain 2 score: 11.6 bits; conditional E-value: 1.3e-05
TIGR01508 35 elraevDavmvGigtvlaDdPsLtvkka.keer..nPvrvvvdsklrvpldarilnk 88
+ a vD+v i+tvl+ + vk++ k+e + +++vv+s++r ++ l+k
MMSYN1_0414 442 TIGARVDGVFLPINTVLKSGEVVEVKTSpKQEPthEWLKIVVTSNARNRIKKY-LQK 497
6889***********************9655446689********99876543.333 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (754 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 479 (0.106729); expected 89.8 (0.02)
Passed bias filter: 89 (0.0198307); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.22
# Mc/sec: 4921.71
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0414 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0415 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0415.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0415/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0415 [L=988]
Description: chromosome segregation protein SMC 5=Equivalog Chromosome segregation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0 1028.1 61.7 3.3e-132 440.4 34.4 3.0 3 TIGR02168 SMC_prok_B: chromosome segregation protein SMC
2.1e-159 530.4 60.3 3.3e-58 195.2 26.0 3.0 3 TIGR02169 SMC_prok_A: chromosome segregation protein SMC
9.2e-10 36.0 0.1 3.5e-08 30.8 0.0 2.6 3 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
2.7e-08 31.2 28.5 2.2e-05 21.6 28.6 4.7 3 TIGR00634 recN: DNA repair protein RecN
2e-06 25.4 0.0 0.005 14.3 0.0 2.8 2 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
3e-06 23.8 0.1 2.4e-05 20.7 0.0 2.2 2 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
3.1e-05 21.7 1.0 0.023 12.3 0.0 3.2 3 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
4.4e-05 19.9 0.0 0.0041 13.4 0.0 2.5 2 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
5e-05 20.1 0.0 0.00046 16.9 0.0 2.2 2 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
0.00013 18.7 0.0 0.00033 17.3 0.0 1.6 1 TIGR01192 chvA: glucan exporter ATP-binding protein
0.00035 18.3 0.0 0.01 13.5 0.0 2.5 2 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
0.0025 15.1 0.0 0.027 11.7 0.0 2.2 2 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
0.0035 14.0 0.0 0.026 11.1 0.0 2.2 2 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
0.0036 14.3 0.0 0.068 10.1 0.0 2.2 2 TIGR01288 nodI: nodulation ABC transporter NodI
------ inclusion threshold ------
0.017 12.7 0.0 0.14 9.7 0.0 2.3 2 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
2.6 3.8 123.0 0.082 8.7 58.9 4.1 3 TIGR04523 Mplasa_alph_rch: helix-rich protein
Domain annotation for each model (and alignments):
>> TIGR02168 SMC_prok_B: chromosome segregation protein SMC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 440.4 34.4 1.2e-134 3.3e-132 1 418 [. 3 400 .. 3 404 .. 0.98
2 ! 181.0 4.5 2.4e-56 6.8e-54 500 748 .. 399 653 .. 396 657 .. 0.97
3 ! 419.6 8.4 2.2e-128 6.2e-126 873 1181 .] 673 981 .. 659 981 .. 0.97
Alignments for each domain:
== domain 1 score: 440.4 bits; conditional E-value: 1.2e-134
TIGR02168 1 rLkklelaGFKSFadkttinfekgitgiVGPNGcGKSNivDAirWVLGEqsakaLRgekmeDVIFaGseerkplslAeVeLvfdNsdgllpgadysei 98
+Lk+++++GFKSFad t+++f+ ++tg+VGPNG+GKSNi+DAirW LGEqs+k+LRg+km+D++F+G++e+k++++AeV+Lvf+N+++++++++++ +
MMSYN1_0415 3 FLKQIRASGFKSFADLTVMDFNYDMTGVVGPNGSGKSNITDAIRWTLGEQSTKTLRGSKMDDIVFSGNNEKKAADVAEVTLVFNNTHENFSSIKSDVV 100
69************************************************************************************************ PP
TIGR02168 99 sitRrlyR.dGeseYliNgqpcRlkDiqdlfldtGlgkesysiieqGkieeiieakpeerRailEEAAGvskYkerkketekkLerteenLeRledil 195
+itR++++ ++ese++iN+++c+lkD+q+++l++Gl+++s++ii+qG+++++ e+kpe +R+i+++AAGvskYk+rkket++kLe+++enL+Rledi+
MMSYN1_0415 101 EITRKFDKnTRESEFYINSTKCKLKDVQSIALEAGLTRSSIAIISQGTVANFTESKPETKREIFDDAAGVSKYKKRKKETLSKLEKATENLTRLEDIA 198
********99**************************************************************************************** PP
TIGR02168 196 kElerqlksLerQaekAekykelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqel 293
kE++r+l +LerQ++kA +y+++ +el+++el +l+++l+ l +++eel+ e+ e+e+++++l++e+++++ee++ + +++se++++l el+++++++
MMSYN1_0415 199 KEISRRLPNLERQSKKALEYQQKVNELKNIELYILTKDLKVLVNRIEELRVEKIEYETQIKKLTNEINMSQEEVNLIIDKDSEDNQKLGELNSKFNSI 296
************************************************************************************************** PP
TIGR02168 294 kaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevael 391
++i++l+ ++++++ +++ e+ ++k+++e ++a ++++++e + +++s++++l++ +e++l el+++++ ++++++e+
MMSYN1_0415 297 VEKIANLKVRKQKAEFKEQ--------------ENLNTKDQDEYKAALIKKQFDEKQISIKSEKDKLTK-------AENSLLELKDKYDYYSNKYNEI 373
*****************75..............788899******************************.......89******************** PP
TIGR02168 392 eeqlaslnaelerleaeleqleerrer 418
+++++++ +++r++ ++e++e++++
MMSYN1_0415 374 YREIETIRTTISRISIQIEAIEHNKKA 400
***********************9875 PP
== domain 2 score: 181.0 bits; conditional E-value: 2.4e-56
TIGR02168 500 qenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkkne.lGrvtflpldvikgaeieaseaevl 596
+ +l+++++gv+a+l+n+++++g++gvl++li+v+e+y+ Ai+++ +++++++v+++++++kkaie+lkkn+ lGrvtflpl++++++ i+ ++++l
MMSYN1_0415 399 KAALQSYQDGVSAILNNQKQIGGVVGVLKSLINVKEEYQIAISVTASGHMNSLVMKTDQDVKKAIEFLKKNNnLGRVTFLPLNTLTPNLINPVQRQIL 496
567899**************************************************************99887************************* PP
TIGR02168 597 kseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsek.....tessilerkkeieeleeeie 689
+++eg++g+a++lv+++e+++ka+e+ L++++vv+++d+A++lak+++++++iv+ldG+ + ++g+i+ggs++ t+++++++++ +eel+++ie
MMSYN1_0415 497 EKSEGFVGFANELVEYPETISKAVEYALASIIVVQSYDDAINLAKNTNFRFNIVSLDGQRILPHGAIVGGSTRnanifTKQNTQNQDNTLEELKNKIE 594
***********************************************************************9888888899999999*********** PP
TIGR02168 690 eleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqle 748
le+k +++ke++e+++++++l++++++l+ ++++++++l + ++l++++ e+++l+
MMSYN1_0415 595 LLEQKEISKTKEITEYKTANDSLRDQINDLNGTIRNAKNNLFNWTENLKEFSDEHKSLT 653
*************************************************9999998876 PP
== domain 3 score: 419.6 bits; conditional E-value: 2.2e-128
TIGR02168 873 leeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveee 968
l +++ el+ ++++++ ++++++ ++++ +e+++e+++k++++++el+el+++ +++++++ l +++ ++++rls+ y+++ e+a ++e + e+
MMSYN1_0415 673 LAKQISELEIQRDEIQIEINSISFKRTQSMEKQKEMNSKNSKKRDELDELKTHAGSINTEYNVLLQRRITIIDRLSNGYQITEETALTMEVENIED 768
67899999999999999999999999****************************************************************995555 PP
TIGR02168 969 eeeaeeelkrleekikeLGpVNlaAieEyeelkeRyeflekqkeDleeAkekLeeaIeeidkearerfkdtfekvnenfqevFsklFggGeaeLel 1064
e+ a+e++ +l++ i+++G+VN++AieEy+++keR++++++q++D+ +AkekLe++I +id ++++fk+++e+vn+ +++vFsk+FggG aeL +
MMSYN1_0415 769 EQVARERIIELTTYIQNIGNVNMDAIEEYKNEKERFDYYDQQIKDIYDAKEKLESIILDIDIAMESQFKQIIEDVNKALPDVFSKMFGGGYAELIY 864
699********************************************************************************************* PP
TIGR02168 1065 tdpedlLeagieIkaqPpGKklqnlslLSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFakllkefskktQFIviTHnkgTMeea 1160
tdp+++Le+gi+Ik+ PpGKk++nl+lLSGGEK+L+Al++lFAi+k++P P++iLDE++ApLD++NveRFa+++++fs++tQFI++TH++gTM+++
MMSYN1_0415 865 TDPDNILETGIDIKIFPPGKKITNLNLLSGGEKSLVALSVLFAILKARPLPLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIVTHREGTMTQC 960
************************************************************************************************ PP
TIGR02168 1161 dqLyGVTMqekGVSkivsvdl 1181
d+L+GVTMq+kG++ki++v+l
MMSYN1_0415 961 DSLFGVTMQTKGITKIINVKL 981
*******************97 PP
>> TIGR02169 SMC_prok_A: chromosome segregation protein SMC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 195.2 26.0 1.2e-60 3.3e-58 1 333 [. 3 336 .. 3 339 .. 0.95
2 ! 179.2 35.7 8e-56 2.2e-53 345 825 .. 243 736 .. 242 742 .. 0.85
3 ! 180.7 11.8 2.9e-56 8e-54 861 1165 .] 674 981 .. 663 981 .. 0.82
Alignments for each domain:
== domain 1 score: 195.2 bits; conditional E-value: 1.2e-60
TIGR02169 1 yieklelenFKSFgkkkeIpflkgftvisGpNGSGKSNiiDallFaLGlssskalRAerLsdLiskgakeaksakeaeVtvtfknddkklp..delev 96
+++++++ +FKSF+ +++ f ++t ++GpNGSGKSNi Da+ + LG +s+k+lR +++ d++++g +e+k a+ aeVt +f+n+ ++++ ++ +v
MMSYN1_0415 3 FLKQIRASGFKSFADLTVMDFNYDMTGVVGPNGSGKSNITDAIRWTLGEQSTKTLRGSKMDDIVFSGNNEKKAADVAEVTLVFNNTHENFSsiKSDVV 100
689****************************************************************9999999*****************99999** PP
TIGR02169 97 srrlkvtkegkySyYylNgksvrlseihdlLakagiypegYnvVlQGDvtkiismsaveRRkiIdeiaGvaeFdekkekaleeLeeveeriervelvi 194
++ +k k+ + S +y+N ++++l++++++ +ag++ + ++ QG v ++ + + +R+i d+ aGv+ + ++k++ l +Le++ e++ r+e +
MMSYN1_0415 101 EITRKFDKNTRESEFYINSTKCKLKDVQSIALEAGLTRSSIAIISQGTVANFTESKPETKREIFDDAAGVSKYKKRKKETLSKLEKATENLTRLEDIA 198
************************************************************************************************** PP
TIGR02169 195 eevrqqlerLekerekaerYkeLkkekreleltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqla 292
+e++ +l Le+ +ka++Y++ +e++++el++l k l+ l + +e+++ e e e +++kl++ei+ ++e++ i +k +e n+k+ +l + +
MMSYN1_0415 199 KEISRRLPNLERQSKKALEYQQKVNELKNIELYILTKDLKVLVNRIEELRVEKIEYETQIKKLTNEINMSQEEVNLIIDKDSEDNQKLGELN-SKFNS 295
*****************************************************************************************975.57899 PP
TIGR02169 293 vkekleelkaeiekleraiaekeeeledaeerlakaeaeid 333
+ ek+++lk+ +k+e + +e+ + + e + a ++++ d
MMSYN1_0415 296 IVEKIANLKVRKQKAEFKEQENLNTKDQDEYKAALIKKQFD 336
99********9999999988887776666666666666655 PP
== domain 2 score: 179.2 bits; conditional E-value: 8e-56
TIGR02169 345 eieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaelee 442
+iee ++e+ + ++++k+l +e + +++e++ + + e ++l el+ k +++ e++ +lk +++ + ++ + + + + + i+++ e +
MMSYN1_0415 243 RIEELRVEKIEYETQIKKLTNEINMSQEEVNLIIDKDSEDNQKLGELNSKFNSIVEKIANLKVRKQKAEFKEQENLNTKDQDEYKAALIKKQFDEKQI 340
46666666666666666666666666666666666666666666666666666666666666444433333333333444455677779999999999 PP
TIGR02169 443 eleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlkasieGvlGtvaqLgkveerYal 540
+ ++ ++++ kae+ l +lk++ + +++++ ++ e+e + +s + +++++e ++ka+ ++ ++++++ +++i Gv+G ++ L++v+e+Y++
MMSYN1_0415 341 SIKSEKDKLTKAENSLLELKDKYDYYSNKYNEIYREIETIRTTISRISIQIEAIEHNKKAALQSYQDGVSAILNNQKQIGGVVGVLKSLINVKEEYQI 438
9999****************************************************999988887677777777778888****************** PP
TIGR02169 541 AiEvAaGnrlnnvVVeddavAkeaIellke.rkagratFLPLnkmrsk...erdlsilaed.GvidfavdlvefdekyepvvkyvlgdTlvvedleaa 633
Ai v a++ +n V ++d++ k+aIe+lk+ +++gr+tFLPLn + + + +il++ G+++fa +lve+ e + ++v y+l + +vv++ + a
MMSYN1_0415 439 AISVTASGHMNSLVMKTDQDVKKAIEFLKKnNNLGRVTFLPLNTLTPNlinPVQRQILEKSeGFVGFANELVEYPETISKAVEYALASIIVVQSYDDA 536
****************************872579************9988777777777767*******************************98777 PP
TIGR02169 634 rrlmg..kfR..lVtLeGellekSGaitGGs..raersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeieke 725
+l +fR +V+L+G + + Gai+GGs +a+ +++ +++++ + le+l++++e Le+++ s ++e+++ + + d+l+++++d + i++++++
MMSYN1_0415 537 INLAKntNFRfnIVSLDGQRILPHGAIVGGStrNANIFTKQNTQNQDNTLEELKNKIELLEQKEISKTKEITEYKTANDSLRDQINDLNGTIRNAKNN 634
6665444455227******************655556778888899999************************************************* PP
TIGR02169 726 leqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedl..eaelseekieeieeelekleeevsriearleeieae 821
l + e+ ++++++ + l + + + +++e l+++i+ele + +++ +++++ ++ +s+ek +e++++ +k ++e+ +++ + +i+ e
MMSYN1_0415 635 LFNWTENLKEFSDEHKSLTGRDLFTGVYSKSDESESIILAKQISELEIQRDEIQIEINSIsfKRTQSMEKQKEMNSKNSKKRDELDELKTHAGSINTE 732
*****************999888888999999999999********************98446778899999999*****************999999 PP
TIGR02169 822 lnkl 825
n l
MMSYN1_0415 733 YNVL 736
8865 PP
== domain 3 score: 180.7 bits; conditional E-value: 2.9e-56
TIGR02169 861 kakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeels...eleeevkeeeeepeeels 953
+++ ele + +e++ +++ ++ ++ + ++ +e++++ ++ +++ +el++++ + +++ + l +++ + ++ls ++ ee ++ e+e++ +
MMSYN1_0415 674 AKQISELEIQRDEIQIEINSISFKRTQSMEKQKEMNSKNSKKRDELDELKTHAGSINTEYNVLLQRRITIIDRLSngyQITEE-TALTMEVENIED 768
34455555555555555555555555555555555555555555555555555555555555555544444444411134433.355666677777 PP
TIGR02169 954 lekvkkelekveeeleaLepvNmkAieeYeevekrldelkekrekLeeErkellerieelekkkrevFmeaFeainenfkeifaeLs.dGtgeLiL 1048
+ ++++ +++ ++++++vNm AieeY+++++r+d + ++ + + +++l+ i +++ + F + e++n+ + +f+++ +G +eLi
MMSYN1_0415 769 EQVARERIIELTTYIQNIGNVNMDAIEEYKNEKERFDYYDQQIKDIYDAKEKLESIILDIDIAMESQFKQIIEDVNKALPDVFSKMFgGGYAELIY 864
7777888999***************************************************************************99899****** PP
TIGR02169 1049 enPddPfagglelkakPkdKavqrleamSGGEKsltALsfifAiQrykPspfYafDEvDmfLDgvNvervaklikekakeaQfivvslrkpmleaA 1144
+Pd+ ++ g+ +k+ P +K++ l+ +SGGEKsl+ALs +fAi + +P p+ ++DE + LD vNver a+ +++ ++++Qfi+v++r+ + +
MMSYN1_0415 865 TDPDNILETGIDIKIFPPGKKITNLNLLSGGEKSLVALSVLFAILKARPLPLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIVTHREGTMTQC 960
************************************************************************************************ PP
TIGR02169 1145 draiGvtlrrdgesqvlglkl 1165
d Gvt++ +g+++++++kl
MMSYN1_0415 961 DSLFGVTMQTKGITKIINVKL 981
******************997 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.1 0.0 0.064 18 349 372 .. 26 49 .. 15 90 .. 0.79
2 ? -2.7 0.1 1.8 5.1e+02 174 204 .. 281 311 .. 277 329 .. 0.71
3 ! 30.8 0.0 1.3e-10 3.5e-08 458 526 .. 891 963 .. 869 966 .. 0.91
Alignments for each domain:
== domain 1 score: 2.1 bits; conditional E-value: 0.064
TIGR02857 349 elvalvGaSGaGKstllklllgfv 372
++++vG+ G+GKs + +++ ++
MMSYN1_0415 26 DMTGVVGPNGSGKSNITDAIRWTL 49
5789************99886555 PP
== domain 2 score: -2.7 bits; conditional E-value: 1.8
TIGR02857 174 kqlaalsrLsghfldlvrglptLklfgraka 204
+ ++l +L+++f +v+ ++ Lk+ +++ +
MMSYN1_0415 281 EDNQKLGELNSKFNSIVEKIANLKVRKQKAE 311
56688999***************99766543 PP
== domain 3 score: 30.8 bits; conditional E-value: 1.3e-10
TIGR02857 458 gLSgGqrqRlaLArallrda....pllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladki 526
LSgG++ +aL +++ + pl++lDE a LD+ +++ + +r+++++ ++v+Hr+ +++++d +
MMSYN1_0415 891 LLSGGEKSLVALSVLFAILKarplPLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIVTHREGTMTQCDSL 963
59***********98875555688**********************************************986 PP
>> TIGR00634 recN: DNA repair protein RecN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.6 28.6 7.7e-08 2.2e-05 2 364 .. 4 393 .. 3 482 .. 0.61
2 ? 0.4 1.3 0.2 57 231 298 .. 579 644 .. 569 656 .. 0.56
3 ! 16.5 0.0 2.6e-06 0.00073 431 530 .. 883 981 .. 874 986 .. 0.85
Alignments for each domain:
== domain 1 score: 21.6 bits; conditional E-value: 7.7e-08
TIGR00634 2 LteLrienlalieelev.efergltvltGETGaGKsividalelllGqradaelvRkge.eravvegvFtleseddadltalqei...eleeededee 94
L+++r + +l+v +f+ +t + G G+GKs + da+ lG++ ++ +R + + v +g + + +d a++t + + + + + d
MMSYN1_0415 4 LKQIRASGFKSFADLTVmDFNYDMTGVVGPNGSGKSNITDAIRWTLGEQS-TKTLRGSKmDDIVFSGNNEKKAADVAEVTLVFNNtheNFSSIKSDVV 100
6677777777777777648******************************9.77777665155555666666666656666555440003444455667 PP
TIGR00634 95 villrkisrdgrsraylngklvsakslke......ltsellelhgQndqqrLl..redeqrqllDkfaaaeekvkaleelyqallkarqelkelqqke 184
+i+++ +++ +s+ y+n++ + k++++ lt+ +++ +Q+ + +++ +r++ D a+ + k+ +e+ +l ka ++l++l++ +
MMSYN1_0415 101 EITRKFDKNTRESEFYINSTKCKLKDVQSialeagLTRSSIAIISQGTVANFTesKPETKREIFDDAAGVSKYKKRKKETLSKLEKATENLTRLEDIA 198
778877888899********99999987622222257889******998888633689*************999999999999999999999999988 PP
TIGR00634 185 qelaqrl........dlLkfq..leEleevelesg..EdeaLeeeqeklseleklkelaqealaaLse..dadvqesalleslaearaelaseidasl 268
+e +rl L++q ++El+++el + + L++ +e l +ek++ ++ ++L++ ++ ++e +l+ + ++ e+++++
MMSYN1_0415 199 KEISRRLpnlerqskKALEYQqkVNELKNIELYILtkDLKVLVNRIEEL-RVEKIEY--ETQIKKLTNeiNMSQEEVNLIIDKDSEDNQKLGELNSKF 293
8877665000000004555543355666665543211333344443333.2333322..222344554233333333333333333334444589999 PP
TIGR00634 269 kelaekveealteveeatrelreyldeleadperl....neieerlaeikrLkrKygasveevleyaekikeeldqLedseesleaLeeevekleeel 362
+ + ek++++ + a ++ +e l+ ++d+ + ++ +e++ ik k K + + +le ++k ++ ++ + + e+++ + ++ ++
MMSYN1_0415 294 NSIVEKIANLKVRKQKAEFKEQENLNTKDQDEYKAalikKQFDEKQISIKSEKDKLTKAENSLLELKDKYDYYSNKYNEIYREIETIRTTISRISIQI 391
99999999888888888888888877777776554111123346677777777777777777777777777777777777777777777777666555 PP
TIGR00634 363 ak 364
++
MMSYN1_0415 392 EA 393
42 PP
== domain 2 score: 0.4 bits; conditional E-value: 0.2
TIGR00634 231 aqealaaLsedadvqesalleslaearaelaseidaslkelaekveealteveeatrelreyldelea 298
+q+ +++L e ++ lle+ + + + e+ + l+++++++ + +a ++l + +++l+
MMSYN1_0415 579 TQNQDNTLEE--LKNKIELLEQKEISKTKEITEYKTANDSLRDQINDLNGTIRNAKNNLFNWTENLKE 644
4555555555..22233333333333334444466666666666666666666666666666666653 PP
== domain 3 score: 16.5 bits; conditional E-value: 2.6e-06
TIGR00634 431 GekvkpLakvASGGELSRvmLalkvvlsssaavttliFDEvDvGvsGktaqaiakkLaklsekkQvlvvTHlpqvaaladahlkvekevldertatkv 528
G+k+ L+ SGGE S v L++ + + + + +i DE + + + a+ +++ s+++Q ++vTH d + v ++++ ++v
MMSYN1_0415 883 GKKITNLN-LLSGGEKSLVALSVLFAILKARPLPLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIVTHREGTMTQCDSLFGVTMQTKGITKIINV 979
55666664.569*****9988877666667899************************************************99999999988666666 PP
TIGR00634 529 re 530
+
MMSYN1_0415 980 KL 981
54 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.7 0.0 0.0019 0.53 19 80 .. 26 91 .. 13 113 .. 0.71
2 ! 14.3 0.0 1.8e-05 0.005 125 185 .. 889 952 .. 871 955 .. 0.82
Alignments for each domain:
== domain 1 score: 7.7 bits; conditional E-value: 0.0019
TIGR01166 19 evlallGanGaGkstlllhlnGllrPksGkvlldGe..eldysrkglle..lrkkvalvlqdpddq 80
++++++G+nG+Gks + + +l +s k l++ + ++ +s ++ + +v+lv+ ++ +
MMSYN1_0415 26 DMTGVVGPNGSGKSNITDAIRWTLGEQSTKTLRGSKmdDIVFSGNNEKKaaDVAEVTLVFNNTHEN 91
57899******************9999999887765113444433333200335677777777665 PP
== domain 2 score: 14.3 bits; conditional E-value: 1.8e-05
TIGR01166 125 thllsgGekkrvaiagaval.rpd...vllldePtagldpaGaeqlleilrklreeGktvvisth 185
+llsgGek va++ a+ +++ +++lde a ldp +e++++ +r++ ++ + +++ th
MMSYN1_0415 889 LNLLSGGEKSLVALSVLFAIlKARplpLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIV-TH 952
5789*********99877642444334789***********************998777766.44 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.4 0.0 0.22 61 497 511 .. 29 43 .. 26 53 .. 0.86
2 ! 20.7 0.0 8.7e-08 2.4e-05 603 670 .. 891 962 .. 873 971 .. 0.86
Alignments for each domain:
== domain 1 score: -0.4 bits; conditional E-value: 0.22
TIGR03375 497 aiiGriGsGKstllk 511
+++G +GsGKs ++
MMSYN1_0415 29 GVVGPNGSGKSNITD 43
89*********9875 PP
== domain 2 score: 20.7 bits; conditional E-value: 8.7e-08
TIGR03375 603 sLSgGQrqavalaR..allkdp..pillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdr 670
LSgG + +val+ a+lk + p+++LDE + lD + e++ + ++++++++ +++vtHr+ ++ +d
MMSYN1_0415 891 LLSGGEKSLVALSVlfAILKARplPLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIVTHREGTMTQCDS 962
59*********9862245555423689************************************999988876 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.3 0.0 8e-05 0.023 12 49 .. 9 46 .. 1 132 [. 0.81
2 ? -3.7 0.2 6.4 1.8e+03 111 138 .. 573 600 .. 566 613 .. 0.70
3 ! 6.4 0.0 0.005 1.4 142 214 .. 890 966 .. 878 978 .. 0.80
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 8e-05
TIGR03411 12 fdgfkalndlslsveegelrviiGpnGaGkttllDvit 49
gfk+ dl++ + ++ ++GpnG+Gk+ + D+i
MMSYN1_0415 9 ASGFKSFADLTVMDFNYDMTGVVGPNGSGKSNITDAIR 46
468888888888888899*****************995 PP
== domain 2 score: -3.7 bits; conditional E-value: 6.4
TIGR03411 111 llfarlskeekerieevleligLeekad 138
+++++ ++++++++ee+ + i+L e+++
MMSYN1_0415 573 IFTKQNTQNQDNTLEELKNKIELLEQKE 600
4555666677777888888888777665 PP
== domain 3 score: 6.4 bits; conditional E-value: 0.005
TIGR03411 142 glLshGqkqwLeigmllv...qep.kllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtv 214
+lLs G+k + +++l++ +p l++lDe a + + e+ a+ +++ ++++ ++v h + + + ++ v
MMSYN1_0415 890 NLLSGGEKSLVALSVLFAilkARPlPLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIVTHREGTMTQCDSLFGV 966
57999999999888775321134426999**********************************98888877765544 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.6 0.0 0.013 3.7 484 503 .. 26 45 .. 14 56 .. 0.85
2 ! 13.4 0.0 1.5e-05 0.0041 593 662 .. 891 964 .. 884 976 .. 0.83
Alignments for each domain:
== domain 1 score: 3.6 bits; conditional E-value: 0.013
TIGR01846 484 eviGivGpsGsGkstltkll 503
++ G+vGp GsGks +t +
MMSYN1_0415 26 DMTGVVGPNGSGKSNITDAI 45
678************99765 PP
== domain 2 score: 13.4 bits; conditional E-value: 1.5e-05
TIGR01846 593 alsGGqrqrialar..alv.anPr.ilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadril 662
lsGG + +al+ a++ a P ++ildea + ld + r +r+ +++ ii++hr t+ ++d ++
MMSYN1_0415 891 LLSGGEKSLVALSVlfAILkARPLpLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIVTHREGTMTQCDSLF 964
6899999999987422444156643679*********9999999***************************986 PP
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.1 0.0 0.2 56 369 389 .. 28 47 .. 13 100 .. 0.72
2 ! 16.9 0.0 1.6e-06 0.00046 477 544 .. 892 963 .. 886 986 .. 0.87
Alignments for each domain:
== domain 1 score: 0.1 bits; conditional E-value: 0.2
TIGR02204 369 valvGPsGaGkstllelllrf 389
+vGP G+Gks + + + r+
MMSYN1_0415 28 TGVVGPNGSGKSNITDAI-RW 47
568*********998865.44 PP
== domain 2 score: 16.9 bits; conditional E-value: 1.6e-06
TIGR02204 477 LsGGqkqriaia..railkdap..iLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadri 544
LsGG k +a++ ailk +p +++Ldea + Ld + ++ + + + +++ +++ hr t++++d +
MMSYN1_0415 892 LSGGEKSLVALSvlFAILKARPlpLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIVTHREGTMTQCDSL 963
9******99876226***998622688**************************99***************86 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.3 0.0 1.2e-06 0.00033 470 538 .. 890 962 .. 886 976 .. 0.85
Alignments for each domain:
== domain 1 score: 17.3 bits; conditional E-value: 1.2e-06
TIGR01192 470 nrlsggerqrlaia..railkna..pilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadl 538
n lsgge+ +a++ ailk p+++ldea + ld r + +++n +i++hr t+ + d
MMSYN1_0415 890 NLLSGGEKSLVALSvlFAILKARplPLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIVTHREGTMTQCDS 962
679******99876227****9722579**********888889999********999999******999985 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 0.0 0.16 46 27 41 .. 26 40 .. 12 50 .. 0.83
2 ! 13.5 0.0 3.6e-05 0.01 125 187 .. 889 954 .. 882 963 .. 0.78
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.16
TIGR01189 27 ealvveGpnGiGKtt 41
++ v+GpnG+GK+
MMSYN1_0415 26 DMTGVVGPNGSGKSN 40
567799*******96 PP
== domain 2 score: 13.5 bits; conditional E-value: 3.6e-05
TIGR01189 125 vaqLsAGqkrRlalarLl..lska..plWiLDEPttalDkegvellaellaaHlargGivllathqd 187
++ Ls G k +al+ L+ l+++ pl iLDE + lD ve++a+ +++ ++ +++ th +
MMSYN1_0415 889 LNLLSGGEKSLVALSVLFaiLKARplPLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIV-THRE 954
6789*********9988633455522689***********************9988776665.5554 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.7 0.0 9.7e-05 0.027 19 50 .. 17 48 .. 6 104 .. 0.74
2 ? 0.5 0.0 0.25 69 135 194 .. 889 951 .. 886 968 .. 0.67
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 9.7e-05
TIGR03873 19 dvdvtaPaGaltgllGPnGsGkstllrllaGl 50
d++v + +tg++GPnGsGks + +
MMSYN1_0415 17 DLTVMDFNYDMTGVVGPNGSGKSNITDAIRWT 48
55566666789************987666544 PP
== domain 2 score: 0.5 bits; conditional E-value: 0.25
TIGR03873 135 lstlsGGerqrvhlarala...qeP.klllldePtnhldvsaqlellalvrelaaegvtvvval 194
l+ lsGGe+ v l+ +a +P l++lde ld + vr+ + +++ ++
MMSYN1_0415 889 LNLLSGGEKSLVALSVLFAilkARPlPLVILDEAEAPLDPVNVERFARYVRQFS-HNTQFIIVT 951
5779******999886554222567358899**999999777667777888883.333333333 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.4 0.0 0.29 81 365 386 .. 29 50 .. 26 88 .. 0.77
2 ! 11.1 0.0 9.4e-05 0.026 470 529 .. 890 953 .. 870 954 .. 0.88
Alignments for each domain:
== domain 1 score: -0.4 bits; conditional E-value: 0.29
TIGR02868 365 avvGasGaGKstLlallaglld 386
vvG+ G+GKs + ++ l
MMSYN1_0415 29 GVVGPNGSGKSNITDAIRWTLG 50
59*********99888765554 PP
== domain 2 score: 11.1 bits; conditional E-value: 9.4e-05
TIGR02868 470 arlSGGerqRlalARaLl....adapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
++lSGGe+ +al + p+++LDE + LD+ e+ + +++ +++++ ++vthr
MMSYN1_0415 890 NLLSGGEKSLVALSVLFAilkaRPLPLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIVTHR 953
579******9999754435566899**************************************8 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.1 0.0 0.00024 0.068 31 118 .. 26 119 .. 11 143 .. 0.75
2 ? 1.5 0.0 0.1 29 131 205 .. 887 963 .. 880 980 .. 0.68
Alignments for each domain:
== domain 1 score: 10.1 bits; conditional E-value: 0.00024
TIGR01288 31 ecfgllgpngagkstia...rlvlglispdegkitvlgepvpara..rlarakigvvpqfdnldreft.vrenllvfgryfglstreieevips 118
+ g++gpng+gks i+ r lg s ++ + + +++ v + + a v f+n +++f+ ++ +++ r f +tre e i s
MMSYN1_0415 26 DMTGVVGPNGSGKSNITdaiRWTLGEQSTKTLRGSKMDDIVFSGNneKKAADVAEVTLVFNNTHENFSsIKSDVVEITRKFDKNTRESEFYINS 119
5679************84445668888888877778888776543113333334566679999999963677888899********99987765 PP
== domain 2 score: 1.5 bits; conditional E-value: 0.1
TIGR01288 131 vrvadlsggmkrrltlar..ali.ndp.qllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrl 205
+++ lsgg k ++l+ a++ p l+ilde + ldp +r + + i++t h e + cd l
MMSYN1_0415 887 TNLNLLSGGEKSLVALSVlfAILkARPlPLVILDEAEAPLDPVNVERFARYVRQFSHNTQFIIVT-H-REGTMTQCDSL 963
56778999999887765422444144535899**********98887777777766666655554.4.34455555555 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.1 0.0 0.99 2.8e+02 25 42 .. 26 43 .. 13 49 .. 0.76
2 ? 9.7 0.0 0.00048 0.14 128 190 .. 891 955 .. 886 972 .. 0.79
Alignments for each domain:
== domain 1 score: -1.1 bits; conditional E-value: 0.99
TIGR01277 25 ervailGesGaGkstlln 42
+ ++G+ G+Gks + +
MMSYN1_0415 26 DMTGVVGPNGSGKSNITD 43
67789*********8765 PP
== domain 2 score: 9.7 bits; conditional E-value: 0.00048
TIGR01277 128 elsGGqrqrvalarcl..v..rekpillldepfsaldpklreemlalvkkladekkltlllvthsls 190
lsGG++ val+ + + r+ p+++lde + ldp e v++ +++ + ++vth+
MMSYN1_0415 891 LLSGGEKSLVALSVLFaiLkaRPLPLVILDEAEAPLDPVNVERFARYVRQFSHNTQ--FIIVTHREG 955
69*********98765333236778899**********999999999999988766..577888755 PP
>> TIGR04523 Mplasa_alph_rch: helix-rich protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.7 0.3 0.081 23 233 292 .. 70 129 .. 54 134 .. 0.81
2 ? 8.7 58.9 0.00029 0.082 447 677 .. 179 407 .. 160 418 .. 0.77
3 ? 2.2 49.3 0.028 7.9 398 661 .. 577 843 .. 569 853 .. 0.59
Alignments for each domain:
== domain 1 score: 0.7 bits; conditional E-value: 0.081
TIGR04523 233 siekkqqeinekkaelsetqeqlnqlkeeqekikkqLeeKqkeleqankkikelekqlqe 292
+ ekk ++ e++ ++++t+e+ + +k+ +i ++ ++++ e e + k + k++q
MMSYN1_0415 70 NNEKKAADVAEVTLVFNNTHENFSSIKSDVVEITRKFDKNTRESEFYINSTKCKLKDVQS 129
6789999999****************************9999988665555555555555 PP
== domain 2 score: 8.7 bits; conditional E-value: 0.00029
TIGR04523 447 eedselelkiknlektreslekqieelekeikkikqnlekkkkelkekekelkkLteekkeleekvkdLkkkiselkekiekLesekkekesklsele 544
e+ s+le++ +nl ++ + ++ l + ++ k+ le ++k + k+ el Lt+ k l +++++L ++ e +++i+kL++e++ +++++ +
MMSYN1_0415 179 ETLSKLEKATENLTRLEDIAKEISRRLPNLERQSKKALEYQQKVNELKNIELYILTKDLKVLVNRIEELRVEKIEYETQIKKLTNEINMSQEEVNLII 276
23334444444444444444444444444444555556666665566666677788899999999999999999999999999999999999999999 PP
TIGR04523 545 delkkddfelkkekLekeideknkeieklkeeqkslkkkqeeleelidqkekekkdlikeieekekkiselekelekakkenkkLeseiknikskkek 642
d+ +d+++l + L + +++ ++i +lk +++ + k++e + dq e + ++k+ ek+++i++ +++l+ka++ +L+ + + +k+++
MMSYN1_0415 277 DKDSEDNQKLGE--LNSKFNSIVEKIANLKVRKQKAEFKEQENLNTKDQDEYKAALIKKQFDEKQISIKSEKDKLTKAENSLLELKDKYDYYSNKYNE 372
999999999999..999999999999999999888888888888888999999999999999999999999999999999999999999999999999 PP
TIGR04523 643 lkeevkqIketikeirnkkpeiikkikesvekidd 677
+ e++ I++ti i + i++++k++++ +d
MMSYN1_0415 373 IYREIETIRTTISRISIQIEAIEHNKKAALQSYQD 407
99999999999999998888888888887766555 PP
== domain 3 score: 2.2 bits; conditional E-value: 0.028
TIGR04523 398 skiqkqekenkqldekikklekekeklekeiekLkeeiiknkseIkdLeeedselelkiknlektreslekqieelekeikkikqnlekkkkelkeke 495
++ q+q+++ ++l +ki+ le+++ ++ kei++ k + + ++I+dL+ ++ + ++++ n + +++ + ++l+ + + + e
MMSYN1_0415 577 QNTQNQDNTLEELKNKIELLEQKEISKTKEITEYKTANDSLRDQINDLNGTIRNAKNNLFNWTENLKEFSDEHKSLTGRDLFTGVYSKSDESESIILA 674
66778888888888888888888888888888888888888888888888877666665555555555555555555544334444444444444456 PP
TIGR04523 496 kelkkLteekkeleekvkdLkkkiselkekiekLesekkekesklseledelkkddfelkkekLekeideknkeieklkeeqkslkkkqeeleelidq 593
k++++L+ + e++ +++ + k ++ ek+++++s+ ++k ++l+el++ ++++e + L+ i ++ +l + ++ +++ l ++++
MMSYN1_0415 675 KQISELEIQRDEIQIEINSISFKRTQSMEKQKEMNSKNSKKRDELDELKTHAGSINTEYNV-LLQRRITIID----RLSNGYQITEETA--LTMEVEN 765
6788888888888888888888888888888888888888888888888888888888887.6666665443....3444333333222..2222222 PP
TIGR04523 594 kekek..kdlikeieekekkisele.kelekakkenkkL...eseiknikskkeklkeevkqI....ketikeirnkk 661
e+e+ + i e+++++++i +++ + +e+ k+e+++ +++ik+i +kekl+ + I + ++k+i+++
MMSYN1_0415 766 IEDEQvaRERIIELTTYIQNIGNVNmDAIEEYKNEKERFdyyDQQIKDIYDAKEKLESIILDIdiamESQFKQIIEDV 843
222220022333566666666666523456666666665222356666666666666666433111144555555544 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (988 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 738 (0.164439); expected 89.8 (0.02)
Passed bias filter: 116 (0.0258467); expected 89.8 (0.02)
Passed Vit filter: 27 (0.00601604); expected 4.5 (0.001)
Passed Fwd filter: 21 (0.00467914); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 16 [number of targets reported over threshold]
# CPU time: 0.61u 0.45s 00:00:01.06 Elapsed: 00:00:00.74
# Mc/sec: 1917.31
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0415 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0416 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0416.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0416/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0416 [L=129]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (129 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 207 (0.046123); expected 89.8 (0.02)
Passed bias filter: 92 (0.0204991); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.18
# Mc/sec: 1029.16
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0416 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0418 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0418.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0418/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0418 [L=232]
Description: RNaseIII: ribonuclease III 5=Equivalog RNA metabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-73 245.3 5.0 1.3e-73 245.1 5.0 1.0 1 TIGR02191 RNaseIII: ribonuclease III
Domain annotation for each model (and alignments):
>> TIGR02191 RNaseIII: ribonuclease III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 245.1 5.0 2.9e-77 1.3e-73 2 219 .] 7 226 .. 6 226 .. 0.98
Alignments for each domain:
== domain 1 score: 245.1 bits; conditional E-value: 2.9e-77
TIGR02191 2 ekklglkfknkelleeALtHsSyanekekaknnerLEFLGDavLelvvaeyLfkkfpkakeGeltklraklVseeslaelakelklgeflllgkgeek 99
+k+++k++n++l++eALtH+Syane++ +++++rLEFLGDa+L+++v+++Lf ++ k +eGelt+lra+ V+ee+l ++ak+++lg++++lg+ge
MMSYN1_0418 7 FEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFFNYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYI 104
689*********************************************************************************************** PP
TIGR02191 100 sggreresiladafEAligAiYldsglekarkfveklleerieeekeekkkkdyKtaLqelaqaekkvlpeYelikeegpahdk..eFevevvvegei 195
++g+e+ silad+fEAl +AiYld+ + + +++ ++l+++i++ + +++kd+K++Lqel+q+ek+++++Y ++ke+ a+++ ++v+v ++g++
MMSYN1_0418 105 TKGYEKPSILADVFEALTAAIYLDQKEDGLVTWLDQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEKEDFFANENkiLYTVSVNLNGQK 202
*******************************************998888*****************************998887678*********** PP
TIGR02191 196 lgsgkgkskkeaeqaaAkaalekl 219
+g gkg+sk+eaeq+aA+++l+kl
MMSYN1_0418 203 FGVGKGFSKQEAEQNAASDCLSKL 226
********************9986 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (232 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 178 (0.0396613); expected 89.8 (0.02)
Passed bias filter: 89 (0.0198307); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1665.81
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0418 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0419 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0419.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0419/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0419 [L=334]
Description: plsX: fatty acid/phospholipid synthesis protein PlsX 5=Equivalog Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-104 346.9 5.9 3e-104 346.7 5.9 1.0 1 TIGR00182 plsX: fatty acid/phospholipid synthesis protein Pl
Domain annotation for each model (and alignments):
>> TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 346.7 5.9 6.8e-108 3e-104 2 327 .. 3 329 .. 2 334 .] 0.98
Alignments for each domain:
== domain 1 score: 346.7 bits; conditional E-value: 6.8e-108
TIGR00182 2 riavDalGgdfapkevieavlkalseekdleliLvGdkkaiedlldkepke..kitiilaesviemedepveairrkknssmqvalnlvkegrAdavi 97
+ia D++G d + ++i+a+++ ++e++dl l+LvGd++ i++ l+++p + k + ++ +vi+m+ + + + rrkk++s+ +l+lv++++ d ++
MMSYN1_0419 3 KIAFDVMGSDLGSLTAIKAASEFIKEHDDLYLVLVGDETEINQALQQTPIDktKYETFPTTQVIDMNGSILDI-RRKKDASIIRTLELVRDQKVDGML 99
8**********************************************99776689999*********999998.************************ PP
TIGR00182 98 sAGnsgalmslallrlgrikgierpAlvtllPtvnkkkfvlLDvGAnvdckpkeLvqfalmgsvyakkvlevksPkvgLLniGeEekKGndlvketfk 195
Gns+a +++a+++lg++++i r+ +++++P++++k ++lLDvGAn + +p+ Lv++a m+++y k+vl++++ +gLLniG+E+ KG++l+k+tfk
MMSYN1_0419 100 TGGNSAAFIGAAHFILGELNNIVRAGFMPTMPNAKNKLTLLLDVGANSENTPEDLVNYAKMANIYYKEVLKKPNASIGLLNIGTEKSKGLELQKQTFK 197
************************************************************************************************** PP
TIGR00182 196 lLkedkeinfiGnvEardlldgvvDvlvcDGftGnvvLKtlEgvaktilsllkeelksklrsklaalllkgalkslkkkvdyanygGAvllGlnklvi 293
L+e k+infiGnvE+rd+l+g+vD++v+DG++Gn+ LK+ Eg+ak++l +k+e++s++ kla+l+lk+ +k+++ k+dy+n++GA+llG+++ +
MMSYN1_0419 198 QLEELKNINFIGNVESRDVLTGNVDIIVTDGYSGNICLKACEGAAKVLLTEIKKEITSSFIKKLASLVLKKSFKNVAAKFDYKNHAGAILLGVKGICF 295
************************************************************************************************** PP
TIGR00182 294 ksHGsadkrailsairlAkeavksqviarikssl 327
ksHGs+d r++ ++r+ +a+k++++++i++ l
MMSYN1_0419 296 KSHGSSDVRSFKATLRMTLDAIKNDIVKKIEKGL 329
******************************9865 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (334 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 269 (0.0599376); expected 89.8 (0.02)
Passed bias filter: 163 (0.0363191); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 2398.19
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0419 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0420 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0420.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0420/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0420 [L=547]
Description: DAK2 domain fusion protein YloV 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9e-182 603.2 10.6 1e-181 603.1 10.6 1.0 1 TIGR03599 YloV: DAK2 domain fusion protein YloV
1.8e-06 25.7 0.0 3.8e-06 24.7 0.0 1.5 1 TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit
1.1e-05 22.1 0.0 2.2e-05 21.2 0.0 1.5 1 TIGR02361 dak_ATP: dihydroxyacetone kinase
Domain annotation for each model (and alignments):
>> TIGR03599 YloV: DAK2 domain fusion protein YloV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 603.1 10.6 6.8e-185 1e-181 1 530 [] 7 547 .] 7 547 .] 0.98
Alignments for each domain:
== domain 1 score: 603.1 bits; conditional E-value: 6.8e-185
TIGR03599 1 lakmlraaannLeknaeeinaLNVFPVPDgDTGtNmklTmtsavkevekleeksvaevakalakgllmgArGNSGVIlSQilrGfakalenkeevdae 98
l++m+++++nnL +++ +i++LNVFPVPDgDTGtNm+lT+t++++ev ++e +s++++ +a+++gl+mgArGNSGVI+SQi++G++ ++n++e++++
MMSYN1_0420 7 LKNMITSGVNNLYNHYPQIDKLNVFPVPDGDTGTNMNLTATNGYNEVIDVEYESIGKFLSAFSRGLIMGARGNSGVIFSQIIKGLSLGMNNAKELSVS 104
689*********************************************************************************************** PP
TIGR03599 99 elaaaleeavelaykavmkpvEGTilTVlreaaeaaekaaeeekdleevleaaveaAekalekTPelLpvLkeagVVDsGGqGLvvilegllaalege 196
e+++++++a+e+aykavmkpvEGTilTV+re++e++++ a++ d++++++++v++A+++le+TP+lLp Lke+gVVDsGG+GLv +leg+ ++ ++
MMSYN1_0420 105 EWKSGFSKASEIAYKAVMKPVEGTILTVIRETSEKVSQLADDI-DIKDFWKQVVKNANQSLENTPNLLPLLKEVGVVDSGGYGLVKFLEGIEYYVLND 201
****************************************998.****************************************************** PP
TIGR03599 197 aveakqekeeeaekkeiaeaeaeeeefgYctefllkl....kkkfdveklrkeleklGd.SlvvvadeelvkvHvHtekpgevleaalkyGelskiki 289
++ +k +k e ++ ++ ++ eeefgYcte++++l +k + + +r++l+ +G+ S+vvv d++++kvH H+ +pg+vl+ +++yG+++++ki
MMSYN1_0420 202 QIVNKLDKLEVNNGGNVDMQI--EEEFGYCTEAIVMLnddwINKLQNSVIRDQLQIFGNtSIVVVVDNDILKVHTHSLSPGQVLQFLQQYGDFQTLKI 297
*999*9999999999998777..679***********999999***************99************************************** PP
TIGR03599 290 enmreqheeilek........ekeeekkkeekeraivavaageglaelf.kslgvdvvieggqtmnpsvedllkaiekvnakkvivLpnnknillaae 378
enm+ q+++++++ ++ ++++k +e+ai++v+++e+ +++f ++lg+ + i+ g++mnps+ed+l+aie+v+ak+v++Lpn +n++l+a+
MMSYN1_0420 298 ENMNLQANKQVKNkdqkwkenSDIKTERKLINETAIISVVSSEKQKRYFeDELGIAFAINAGAKMNPSTEDFLQAIETVDAKTVFLLPNSSNVYLTAK 395
************99***99887888889999******************889********************************************** PP
TIGR03599 379 qaaelv.dkevvviptktivqglaAllvfdpeasleenkeameeaikavksgevtvavrdtkvngleikkgdllglvdkkivavekdveealkkllek 475
qa+++ +++++vi+tkti+qg+ A+l+fdp+ ++++n + +++ ++v s+++t+a+++t++ng+ei+k++ll++vd++i+ +e+++e++++k l+k
MMSYN1_0420 396 QAEKIEnKSKIYVIQTKTIQQGMVAALSFDPSLTASKNYSYLSKSFRNVVSFNITKAEKNTTYNGIEIQKDNLLAIVDNNIIGAEQTLEAIFDKQLSK 493
******899***************************************************************************************** PP
TIGR03599 476 lldedselvtilyGedaseeeaeelealieekypdveveiyeggqplyayligve 530
++++++e++ti++G +++e++ +l+++++e y dve+ei++ggq++y++li++e
MMSYN1_0420 494 YIKSKTEIITIFVGGETNEQDLVQLRKFLDEGY-DVEYEIFDGGQETYNLLIAIE 547
*********************************.*******************98 PP
>> TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.7 0.0 2.5e-09 3.8e-06 25 162 .. 32 170 .. 7 172 .. 0.89
Alignments for each domain:
== domain 1 score: 24.7 bits; conditional E-value: 2.5e-09
TIGR02365 25 aiGDgDHGiNlarGfsevkekleklkeksiqeilkkvamaLiskvGGAsGplyGtaflkaskalkdkeeildaeelaelleaglegvkarGkaelgeK 122
++ DgD G+N++ ++ +++ + +++si++ l ++ Li+ G sG ++ ++ +s +++ +++l+++e ++ ++++ + + ++ e
MMSYN1_0420 32 PVPDGDTGTNMNLTATNGYNEVIDVEYESIGKFLSAFSRGLIMGARGNSGVIFSQIIKGLSLGMNN-AKELSVSEWKSGFSKAS-EIAYKAVMKPVEG 127
578**************999*************************************999999999.677789******98765.599999999**** PP
TIGR02365 123 tmvDvlapavealkkavee...kealaeveekakeaaeatkdl 162
t++ v+ + e++++ +++ k+ ++v ++a+++ e+t +l
MMSYN1_0420 128 TILTVIRETSEKVSQLADDidiKDFWKQVVKNANQSLENTPNL 170
*************998888888999999********9999775 PP
>> TIGR02361 dak_ATP: dihydroxyacetone kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.2 0.0 1.5e-08 2.2e-05 383 502 .. 5 123 .. 1 193 [. 0.79
Alignments for each domain:
== domain 1 score: 21.2 bits; conditional E-value: 1.5e-08
TIGR02361 383 ekvekvleagvkalleaepkltklDtv.vGDGDcGstlarga.eailealkskklelddaaellaeisdvveekmgGtsGaLysiflsalaqslkeka 478
e++++++++gv++l + p++ kl v DGD+G+ ++ a ++ +e ++ +e+++ + l+ s + G sG+++s ++++l+ ++++ +
MMSYN1_0420 5 ELLKNMITSGVNNLYNHYPQIDKLNVFpVPDGDTGTNMNLTAtNGYNEVID---VEYESIGKFLSAFSRGLIMGARGNSGVIFSQIIKGLSLGMNNAK 99
6899********************98559*********9766155666666...9999999*********************************9988 PP
TIGR02361 479 skkkevteealaaalkaalealsk 502
+ + + ++ +++a ++a +a+ k
MMSYN1_0420 100 ELSVSEWKSGFSKASEIAYKAVMK 123
776777777788888888888776 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (547 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 257 (0.0572638); expected 89.8 (0.02)
Passed bias filter: 61 (0.0135918); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 3570.53
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0420 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0421 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0421.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0421/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0421 [L=103]
Description: alkaline shock protein Asp23 family protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (103 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 373 (0.0831105); expected 89.8 (0.02)
Passed bias filter: 129 (0.0287433); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 821.74
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0421 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0422 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0422.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0422/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0422 [L=65]
Description: L28: ribosomal protein L28 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-20 70.8 1.0 2.7e-20 70.6 1.0 1.0 1 TIGR00009 L28: ribosomal protein bL28
Domain annotation for each model (and alignments):
>> TIGR00009 L28: ribosomal protein bL28
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 70.6 1.0 6.1e-24 2.7e-20 1 58 [] 1 57 [. 1 57 [. 0.97
Alignments for each domain:
== domain 1 score: 70.6 bits; conditional E-value: 6.1e-24
TIGR00009 1 MsrkCeltgKkplvGnnvshstrktkRrfkpNLqkkrvvvegegrvvrlkvsakaLrt 58
M+r+ ltgK l+G ++sh+ ++tkR+++ NLqk+rv+ e+ g+v ++kvsa++Lrt
MMSYN1_0422 1 MARRDALTGKSALSGQSRSHALNATKRKWNLNLQKVRVMDEN-GSVFNIKVSARTLRT 57
*************************************99855.**************7 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (65 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 99 (0.0220588); expected 89.8 (0.02)
Passed bias filter: 58 (0.0129234); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 444.49
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0422 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0424 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0424.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0424/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0424 [L=147]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (147 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 732 (0.163102); expected 89.8 (0.02)
Passed bias filter: 111 (0.0247326); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1111.04
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0424 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0425 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0425.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0425/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0425 [L=376]
Description: pstS 4=Probable Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-122 407.7 24.5 1.2e-122 407.4 24.5 1.0 1 TIGR04505 PtsS_plasma: phosphate ABC transporter substrate-b
3.4e-15 54.0 10.6 5.8e-09 33.5 7.1 2.4 2 TIGR02136 ptsS_2: phosphate binding protein
2.8e-06 24.6 0.8 8.5e-06 23.0 0.1 2.2 3 TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-bi
Domain annotation for each model (and alignments):
>> TIGR04505 PtsS_plasma: phosphate ABC transporter substrate-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 407.4 24.5 8.2e-126 1.2e-122 2 333 .. 21 355 .. 20 356 .. 0.98
Alignments for each domain:
== domain 1 score: 407.4 bits; conditional E-value: 8.2e-126
TIGR04505 2 skklllilllvlvlilslwiWtfaa.annviviGGstsvdpimqklteeYkkdekkdfiYnstGsaAgvvgvknetYsiGfiskdvtstsipe..... 93
+kk+ll l l++ +i+s+wiWtf++ ++n i+iGGs+s+d ++qkl++eY+k+++k+f+Y+stGs+Ag+++v+n+tYsiGfisk++++ sip+
MMSYN1_0425 21 NKKSLLFLNLCVLFIVSIWIWTFVSiKSNLINIGGSASADLVLQKLIKEYQKQTNKKFNYSSTGSGAGARNVINQTYSIGFISKSQNDLSIPKeirnn 118
89**********************999*********************************************************************** PP
TIGR04505 94 ..ddgeefqdllne.kkeeafeklenekkskkkdsyhfleFAkDsivlvYnikntgltkidkqlkeieftlndnkniteeakealkkiYsend....i 184
dd +ef+++++e k++ f++l+ kd yh+++F kDsiv+vYnikntglt ++q+++i+f++ +nk i++ +++al+kiY++n+ i
MMSYN1_0425 119 lyDDLTEFEKINDElSKKQVFNHLKT-----FKDKYHYIDFVKDSIVFVYNIKNTGLT--NQQIDQIRFNVLNNK-ISSDSQKALHKIYTNNKqsdlI 208
**************99*****99988.....5789***********************..***************.9***************999*** PP
TIGR04505 185 sWkdfakelvkkdeanisnktkvvtytresGsGtrssFeslsgikkknykigqvvn...snGaifeqltkspGslGyvsmsyikqlkekenlklviik 279
sWk+f+k l++kde+nis+ kv++y+++sGsGtrssFe++sg+k++n+kigq+vn snGaif+ql+ s+Gs+G+vsm+y+++lk+ +nl++viik
MMSYN1_0425 209 SWKEFYKLLTNKDENNISSLIKVRPYSTNSGSGTRSSFEQISGLKDNNKKIGQAVNeynSNGAIFTQLDASDGSFGFVSMQYAQDLKKYPNLRSVIIK 306
************************************************************************************************** PP
TIGR04505 280 dgilsedkeweineslnedylkkvYelkRPFialykltdkq..lneiLkflawlsd 333
+ +++ew++n+ +++l +Y+l+RPF+alyk td+q +++iL+f++w+s
MMSYN1_0425 307 Q----NNQEWNLNKRN-DNLL--TYPLSRPFVALYKFTDNQklNDDILDFVYWFSY 355
*....*****999987.9999..9*****************9999*********85 PP
>> TIGR02136 ptsS_2: phosphate binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.6 0.1 1.7e-08 2.5e-05 40 96 .. 50 105 .. 34 122 .. 0.86
2 ! 33.5 7.1 3.9e-12 5.8e-09 130 286 .. 184 364 .. 146 373 .. 0.76
Alignments for each domain:
== domain 1 score: 21.6 bits; conditional E-value: 1.7e-08
TIGR02136 40 titadGSstvaplveaaaeefkkkkpnvkvtvqgaGsgtGikklinGtvdignssRp 96
i + GS + + +++++e++k+++ +k + +++Gsg+G++++in t ig s+
MMSYN1_0425 50 LINIGGSASADLVLQKLIKEYQKQTN-KKFNYSSTGSGAGARNVINQTYSIGFISKS 105
46788999999999********9987.9************************98854 PP
== domain 2 score: 33.5 bits; conditional E-value: 3.9e-12
TIGR02136 130 nvkvkdLtveqlkkIye....GeitnWkeVggklpnk.........kivvvgreassGTrdtFeeavlkk...akikreketaqedngvvvqsvsknp 211
n k+ + +++ l+kIy+ + Wke + l nk k+ ++ +++sGTr Fe++ k +ki +++ ++ ++ng++ + +
MMSYN1_0425 184 NNKISSDSQKALHKIYTnnkqSDLISWKEFYKLLTNKdennissliKVRPYSTNSGSGTRSSFEQISGLKdnnKKIGQAV-NEYNSNGAIFTQLDASD 280
45888889999*****9999999999**9988876653333333334455899***********9864431113444555.5999************* PP
TIGR02136 212 naigYlglgyvveskk....kvkplkvng..vepskeniangsYqlsrplfiyvnkkpakk.keevkeFid.fvlskd.tqekl 286
++ g++++ y ++ kk + + +k+n+ + +k n + +Y+lsrp+ + + + ++k ++++ +F+ f s+d + +k+
MMSYN1_0425 281 GSFGFVSMQYAQDLKKypnlRSVIIKQNNqeWNLNKRNDNLLTYPLSRPFVALYKFTDNQKlNDDILDFVYwFSYSNDqKVKKI 364
*************999996666667777777666777777779******876666666565689999**973556666233444 PP
>> TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.0 0.1 5.7e-09 8.5e-06 4 52 .. 54 100 .. 51 169 .. 0.87
2 ? -3.2 0.0 0.55 8.2e+02 176 202 .. 267 293 .. 256 302 .. 0.75
3 ? -0.8 0.1 0.098 1.5e+02 232 292 .. 303 363 .. 266 375 .. 0.57
Alignments for each domain:
== domain 1 score: 23.0 bits; conditional E-value: 5.7e-09
TIGR00975 4 aGstfpapliskwvedyeksnpakvtvnyqskGSgaGikqiaaktvdfg 52
Gs+ + +++k++++y+k+++ ++ ny s+GSgaG +++ ++t +g
MMSYN1_0425 54 GGSASADLVLQKLIKEYQKQTN--KKFNYSSTGSGAGARNVINQTYSIG 100
5888888899**********96..69******************99887 PP
== domain 2 score: -3.2 bits; conditional E-value: 0.55
TIGR00975 176 kgNdGvaavvketpgaigYvelsyake 202
+ N+ + + g+ g+v + ya+
MMSYN1_0425 267 NSNGAIFTQLDASDGSFGFVSMQYAQD 293
566777777777888888888888875 PP
== domain 3 score: -0.8 bits; conditional E-value: 0.098
TIGR00975 232 vkistakedaksltdapgde..ayPivaatylivlkkqkdeekakalkaflewalt.egqkaad 292
v i+ ++++++ +++ +d+ +yP+ + ++ ++k ++++ + +f+ w + qk ++
MMSYN1_0425 303 VIIK--QNNQEWNLNKRNDNllTYPL-SRPFVALYKFTDNQKLNDDILDFVYWFSYsNDQKVKK 363
3344..33344444444443336775.4567777888888888888888887755414444554 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (376 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 294 (0.065508); expected 89.8 (0.02)
Passed bias filter: 106 (0.0236185); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 2454.33
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0425 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0426 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0426.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0426/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0426 [L=696]
Description: phosphate ABC transporter, permease protein PstA, phosphate_pstC: phosphate ABC transporter, permease protein PstC 5=Equivalog Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.7e-106 351.6 60.6 7.6e-66 220.0 26.0 2.1 2 TIGR00974 3a0107s02c: phosphate ABC transporter, permease pr
2.1e-93 310.6 63.1 9.6e-59 196.8 29.1 2.5 2 TIGR02138 phosphate_pstC: phosphate ABC transporter, permeas
2.1e-24 84.2 29.1 1.4e-12 45.5 10.1 3.2 2 TIGR01581 Mo_ABC_porter: NifC-like ABC-type porter
4.2e-19 67.0 37.0 5.8e-13 46.9 13.8 4.3 4 TIGR02141 modB_ABC: molybdate ABC transporter, permease prot
4.4e-11 40.8 40.5 1.8e-08 32.2 11.8 3.6 3 TIGR02139 permease_CysT: sulfate ABC transporter, permease p
3.3e-10 37.8 46.6 3.9e-07 27.8 15.4 4.2 3 TIGR00969 3a0106s02: sulfate ABC transporter, permease prote
2.6e-08 31.8 24.7 2.6e-08 31.8 9.1 2.6 2 TIGR03255 PhnV: 2-aminoethylphosphonate ABC transport system
2e-06 25.4 12.4 2e-06 25.4 12.4 2.9 3 TIGR03416 ABC_choXWV_perm: choline ABC transporter, permease
2.1e-06 25.4 13.0 2.1e-06 25.4 13.0 3.7 4 TIGR01097 PhnE: phosphonate ABC transporter, permease protei
4e-06 24.6 12.8 0.00011 19.9 2.4 3.0 2 TIGR01183 ntrB: nitrate ABC transporter, permease protein
1.7e-05 22.4 47.3 2.2e-05 22.1 16.9 3.6 2 TIGR02140 permease_CysW: sulfate ABC transporter, permease p
0.00048 18.0 5.6 0.00048 18.0 5.6 3.9 4 TIGR03004 ectoine_ehuC: ectoine/hydroxyectoine ABC transport
Domain annotation for each model (and alignments):
>> TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 137.6 26.5 2.7e-43 1e-40 6 270 .. 28 306 .. 23 308 .. 0.85
2 ! 220.0 26.0 2e-68 7.6e-66 2 264 .. 355 614 .. 354 620 .. 0.93
Alignments for each domain:
== domain 1 score: 137.6 bits; conditional E-value: 2.7e-43
TIGR00974 6 alvllaallallplilillyilikGlsaln....lef.ltseptetgaegGilpaivgtlllillaiviavplGilaaiYlaEYakegkltkvirllv 98
+++++++++ll l+++l++++ik +n ef + ++++++ ++ Gil+ + tl+li+++++iavpl i+++ +++EY + + +i+ ++
MMSYN1_0426 28 SIIITLTIFVLLALVILLGFVMIKTNVLFNkqsfFEFvFGKNWSPDSKQFGILTITLMTLILIFISMLIAVPLTIFTSFFISEYLTLKSQKVTIT-II 124
6788899999999999999999999999997666444144778888888************************************7776555555.55 PP
TIGR00974 99 evLagvPSIvvGlfg....lalfvktvlklgfsllagallaLallilPviirtteealkaVPkelreaslaLGatkwqtilkivlpaAlkGiltGiiL 192
+ Lag+PS+v+Glf+ alf + + + +l+ ++ l++a++ +P++i + +a+k+VP +r+aslaLG++k +t+++i+ ++A + i++++iL
MMSYN1_0426 125 KLLAGIPSVVFGLFAreqiGALFKLMGASSNDNLMVAS-LTMAFMAIPIMISLSYDAIKSVPFIYRDASLALGISKEKTTFNIIRKSATPKIISAVIL 221
6*************833323555555667777888899.7********************************************************** PP
TIGR00974 193 aiaRvagEtApLlftalgsssvllk.......lleeaaalpvliyklaseapaseanelawaaalvLivlvlllnliarllakkl 270
++aRv+gEt ++++ a++s ++ + l+++ ++l+ +i + e++ s ++ ++a ++L +lv+++nl+ ++ +k
MMSYN1_0426 222 GMARVIGETMAIMMIAGNSTAWFDTnngvsgfLFSSIRTLSSTIGLEMLENSSSLHESALYAIGMFLFILVFIINLLILFVSNKN 306
**************9888866655599****9999999999999888887444444667888899***********999888775 PP
== domain 2 score: 220.0 bits; conditional E-value: 2e-68
TIGR00974 2 klaialvllaallallplilillyilikGlsaln..lefltseptetgaegGilpaivgtlllillaiviavplGilaaiYlaEYakeg.kltkvirl 96
+++++l++l++ +++++ ++i+ +++ +Gls+l+ flt ++ e Gi+ ai+ tlllil ++++a+pl++++aiYl+E+a+++ ++k++r+
MMSYN1_0426 355 TIMLVLMWLSISFVIMFTFWIVFTTIFNGLSSLKysEAFLT--IEG---EDGIFAAILTTLLLILCTLLFAIPLALACAIYLSEFANKNsYFAKFFRF 447
589999***************************95333444..443...47***********************************998799****** PP
TIGR00974 97 lvevLagvPSIvvGlfglalfvktvlklgfsllagallaLallilPviirtteealkaVPkelreaslaLGatkwqtilkivlpaAlkGiltGiiLai 194
l + a++PSI++G+fgl++f++ +lkl fs+++++ +++++++lP++i+ e+al +VP ++rea+ aLG++k +t++kivlp Al++i+tG iLa+
MMSYN1_0426 448 LLNLAASTPSIIFGIFGLSVFII-YLKLPFSIFSAS-ITMTIVVLPMLIKNFEDALTSVPLSYREAAIALGLSKTKTLFKIVLPNALQAIITGTILAM 543
***********************.9***********.6************************************************************ PP
TIGR00974 195 aRvagEtApLlftalgsssvllk.lleeaaalpvliyklaseapaseanelawaaalvLivlvlllnliar 264
aR++gE+Ap+ +t + + ++ + +l++ ++l++ iyk+ase++ + n+ aw ++l+ i++vl+lnl ++
MMSYN1_0426 544 ARIIGESAPIYLTLGTAIKYPDRgFLSSGSTLTTGIYKIASESAPGQGNDIAWLMSLITIIFVLTLNLSSS 614
*************88888776668*****************955555599*****************9876 PP
>> TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 196.8 29.1 2.6e-61 9.6e-59 5 294 .. 27 305 .. 24 307 .. 0.93
2 ! 119.1 26.0 1.2e-37 4.5e-35 10 285 .. 353 612 .. 346 624 .. 0.85
Alignments for each domain:
== domain 1 score: 196.8 bits; conditional E-value: 2.6e-61
TIGR02138 5 kallliaaviivlvlllivlfllieaipaiekngllefltgteWdadskepvkevygvlplivgtlitsliAlliAvPvsiaiAiflseiapkklkev 102
k+++++ +++++l+l++++ f++i++ +++k++ +ef++g++W +dsk ++g+l++ + tli +i++liAvP+ i+++ f+se++ k ++v
MMSYN1_0426 27 KSIIITLTIFVLLALVILLGFVMIKTNVLFNKQSFFEFVFGKNWSPDSK-----QFGILTITLMTLILIFISMLIAVPLTIFTSFFISEYLTLKSQKV 119
5677888888999999999*************************98885.....8******************************************* PP
TIGR02138 103 lkpvveLlagiPsvvyGlwGlvvlvpllkelvakvlasnlgleqlassplltaglvLaiMilPtvasisedalravpkslkeaalaLGatkwetirkv 200
+++ LlagiPsvv+Gl++ ++ l+k + + ++n l++a+l +a M +P+++s+s da+++vp +++a+laLG +k +t++++
MMSYN1_0426 120 TITIIKLLAGIPSVVFGLFAREQIGALFKL-MGASSNDN----------LMVASLTMAFMAIPIMISLSYDAIKSVPFIYRDASLALGISKEKTTFNI 206
*************************99998.55455555..........99*********************************************** PP
TIGR02138 201 ilpaaksgivaavvLglgRAlGETmavamvign.....slna.lllnlfestttltslialefgeasegsvavsalfalglvLfvitllvnilarliv 292
i ++a + i++av+Lg++R +GETma++m++gn n+ + lf+s +tl+s+i le+ e+s+ s++ sal+a+g++Lf++ +++n+l+ ++
MMSYN1_0426 207 IRKSATPKIISAVILGMARVIGETMAIMMIAGNstawfDTNNgVSGFLFSSIRTLSSTIGLEMLENSS-SLHESALYAIGMFLFILVFIINLLILFVS 303
*********************************888774455255668899****************6.8**********************999987 PP
TIGR02138 293 rk 294
+k
MMSYN1_0426 304 NK 305
76 PP
== domain 2 score: 119.1 bits; conditional E-value: 1.2e-37
TIGR02138 10 iaaviivlvlllivlfllieaipaiekngllefltgteWdadskepvkevygvlplivgtlitsliAlliAvPvsiaiAiflseiapkk..lkevlkp 105
+++++vl+ l i ++++++ + +++ ++ l + ++ + +++ g++++i+ tl+ l +ll+A+P+++a+Ai+lse+a k+ ++++++
MMSYN1_0426 353 YSTIMLVLMWLSISFVIMFTFWIVFTTI--FNGLSSLKYSEAFL-TIEGEDGIFAAILTTLLLILCTLLFAIPLALACAIYLSEFANKNsyFAKFFRF 447
4556666777777777777777777665..55556666643332.567778***********************************9863369***** PP
TIGR02138 106 vveLlagiPsvvyGlwGlvvlvpllkelvakvlasnlgleqlassplltaglvLaiMilPtvasisedalravpkslkeaalaLGatkwetirkvilp 203
+++L a Ps+++G++Gl v++ +lk + +++a++ + i +lP+ + edal++vp s++eaa+aLG +k +t +k++lp
MMSYN1_0426 448 LLNLAASTPSIIFGIFGLSVFIIYLKLPFS----------------IFSASITMTIVVLPMLIKNFEDALTSVPLSYREAAIALGLSKTKTLFKIVLP 529
**********************99999554................99************************************************** PP
TIGR02138 204 aaksgivaavvLglgRAlGETmavamvignslnalllnlfestttltslialefge.asegsvavsalfalglvLfvitllvn 285
a+++i+++++L+++R +GE + +++g ++++ +++s+ tlt+ i ++e a ++ + l++l + fv+tl ++
MMSYN1_0426 530 NALQAIITGTILAMARIIGESAPIYLTLGTAIKYPDRGFLSSGSTLTTGIYKIASEsAPGQGNDIAWLMSLITIIFVLTLNLS 612
*********************************99999999999999988765555155677788888888888888888655 PP
>> TIGR01581 Mo_ABC_porter: NifC-like ABC-type porter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.5 10.1 3.7e-15 1.4e-12 25 186 .. 85 241 .. 71 247 .. 0.88
2 ! 42.8 11.1 2.7e-14 9.9e-12 19 176 .. 398 551 .. 384 608 .. 0.78
Alignments for each domain:
== domain 1 score: 45.5 bits; conditional E-value: 3.7e-15
TIGR01581 25 lSlltslislllavvlgvPtAyvlarvr.fplkklldtllelPlvlPplVaGiaLLllfgrlgllgsyleaagiklifstlavvlAqtfvaapllvrv 121
+ l+ +is+l+av l++ t + ++ ++ +k+ t+++l +P +V G+ f r + +g+ ++ +g + + l f+a+p+++
MMSYN1_0426 85 MTLILIFISMLIAVPLTIFTSFFISEYLtLKSQKVTITIIKLLAGIPSVVFGL-----FAR-EQIGALFKLMGASSNDNLMVASLTMAFMAIPIMISL 176
4455567788888888888899998765499999******************5.....889.899********998888888889999********** PP
TIGR01581 122 lrstfesvdaeyeevarslGageletflkvtlPlarkallaglvlafaRalGeFGAtlllAgslq 186
+++++sv+ y++++ +lG ++ +t ++ a+++++++++l aR +Ge A++++Ag+++
MMSYN1_0426 177 SYDAIKSVPFIYRDASLALGISKEKTTFNIIRKSATPKIISAVILGMARVIGETMAIMMIAGNST 241
**************************************************************975 PP
== domain 2 score: 42.8 bits; conditional E-value: 2.7e-14
TIGR01581 19 lqkalrlSlltslislllavvlgvPtAyv....larvr...fplkklldtllelPlvlPplVaGiaLLllfgrlgllgsyleaagiklifstlavvlA 109
++ + ++lt+l+ +l ++++++P+A++ l+ + k + ll+l P ++ Gi L +f kl fs + +
MMSYN1_0426 398 GEDGIFAAILTTLLLILCTLLFAIPLALAcaiyLSEFAnknSYFAKFFRFLLNLAASTPSIIFGIFGLSVFII-----------YLKLPFSIFSASIT 484
44455556666666666666666666654111166665222345688999**************987777755...........45677888888888 PP
TIGR01581 110 qtfvaapllvrvlrstfesvdaeyeevarslGageletflkvtlPlarkallaglvlafaRalGeFG 176
t v +p+l+++ +++++sv+ y+e+a +lG+++ +t+ k+ lP a++a+++g++la aR +Ge
MMSYN1_0426 485 MTIVVLPMLIKNFEDALTSVPLSYREAAIALGLSKTKTLFKIVLPNALQAIITGTILAMARIIGESA 551
89999***********************************************************965 PP
>> TIGR02141 modB_ABC: molybdate ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.8 0.83 3.1e+02 7 30 .. 31 54 .. 24 63 .. 0.75
2 ! 34.6 15.2 9e-12 3.4e-09 2 163 .. 85 241 .. 84 305 .. 0.92
3 ? -3.6 1.0 4.6 1.7e+03 185 200 .. 356 371 .. 349 378 .. 0.55
4 ! 46.9 13.8 1.5e-15 5.8e-13 3 198 .. 409 609 .. 407 617 .. 0.74
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 0.83
TIGR02141 7 aviatlllllLgilvawllarkef 30
++++++ll+L+il++ +++++++
MMSYN1_0426 31 ITLTIFVLLALVILLGFVMIKTNV 54
467788888888888888887765 PP
== domain 2 score: 34.6 bits; conditional E-value: 9e-12
TIGR02141 2 lslkvaviatlllllLgilvawllarkef.rgksllealvtlPlvLPPtVlGflLllalgrngligkllellglslvFtfegvvlasvvvslPllvks 98
++l + +i++l+ ++L+i+++ +++++ + +++ +++ l +P +V+G+ ++r+ ig l++l+g s + + l+ +++++P++++
MMSYN1_0426 85 MTLILIFISMLIAVPLTIFTSFFISEYLTlKSQKVTITIIKLLAGIPSVVFGL-----FARE-QIGALFKLMGASSNDNLMVASLTMAFMAIPIMISL 176
6899999****************9987543777888899999999*******6.....6766.8999*****998888888888999999******** PP
TIGR02141 99 iraaleavdkeleeaartlGaselkvflkvtLPlalpgllaglvlsFaralGEFGatlmlaGnip 163
a+++v +++a+ lG s+ k+ ++++ a+p ++++++l+ ar +GE a++m+aGn
MMSYN1_0426 177 SYDAIKSVPFIYRDASLALGISKEKTTFNIIRKSATPKIISAVILGMARVIGETMAIMMIAGNST 241
**************************************************************965 PP
== domain 3 score: -3.6 bits; conditional E-value: 4.6
TIGR02141 185 lllvlvllllslivll 200
+lvl+ l +s+++++
MMSYN1_0426 356 IMLVLMWLSISFVIMF 371
3444445555554444 PP
== domain 4 score: 46.9 bits; conditional E-value: 1.5e-15
TIGR02141 3 slkvaviatlllllLgilvawllar...kefrgksllealvtlPlvLPPtVlGflLllalgrngligkllellglslvFtfegvvlasvvvslPllvk 97
+l + ++++l+ ++L++++a +l++ k+ ++ ++ + l++l P ++G++ l ++ ++ l+l F++ ++ ++ ++v lP+l+k
MMSYN1_0426 409 TLLLILCTLLFAIPLALACAIYLSEfanKNSYFAKFFRFLLNLAASTPSIIFGIFGLSVF-----------IIYLKLPFSIFSASITMTIVVLPMLIK 495
566677888888888888888886411145566777777777777777777776544444...........356779********************* PP
TIGR02141 98 siraaleavdkeleeaartlGaselkvflkvtLPlalpgllaglvlsFaralGEFG.atlmlaGnip.......gktrtlplaiYdaves.....dee 182
+ al++v +++eaa lG s++k+++k++LP+al+++++g++l+ ar +GE + l+l+ i +tl+ iY+ + +++
MMSYN1_0426 496 NFEDALTSVPLSYREAAIALGLSKTKTLFKIVLPNALQAIITGTILAMARIIGESApIYLTLGTAIKypdrgflSSGSTLTTGIYKIASEsapgqGND 593
******************************************************87245777777752222222235799999**9776543333455 PP
TIGR02141 183 aalllvlvllllsliv 198
a+l++l+++++ l++
MMSYN1_0426 594 IAWLMSLITIIFVLTL 609
6666666666665554 PP
>> TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.5 14.8 1.5e-06 0.00055 14 214 .. 42 240 .. 24 248 .. 0.76
2 ? -3.7 0.3 4.4 1.7e+03 240 255 .. 284 299 .. 277 313 .. 0.52
3 ! 32.2 11.8 4.9e-11 1.8e-08 115 207 .. 461 553 .. 355 564 .. 0.87
Alignments for each domain:
== domain 1 score: 17.5 bits; conditional E-value: 1.5e-06
TIGR02139 14 lylslilllPlaalllkas..elgweefwkiitepr.vlaalklslgtaliaalinavfGlllaWvlvry.efpgkrlvdalvdlPfalPtavaGial 107
+ l ++++ +l+ k s e + + w+ +++ +l+ ++l +i++li + + ++ ++ + y ++ +++ +++ l +P v G+
MMSYN1_0426 42 VILLGFVMIKTNVLFNKQSffEFVFGKNWSPDSKQFgILTITLMTLILIFISMLIAVPLTIFTSFFISEYlTLKSQKVTITIIKLLAGIPSVVFGL-- 137
111112223333333333311233344455444443145555567778888999999999999999998856778899999999999999999885.. PP
TIGR02139 108 atlyaenGwigklleelgikvaytklGivvalvfvslPfvvrtvqPvleelekeleeaaaslGasrlqvfrkvilPellpalltGlalafaravGeyG 205
+a ig l++ +g + + ++++f+++P ++ ++ + + +a+ +lG s+ ++ ++i + +p +++ + l++ar +Ge
MMSYN1_0426 138 ---FAR-EQIGALFKLMGASSNDNLMVASLTMAFMAIPIMISLSYDAIKSVPFIYRDASLALGISKEKTTFNIIRKSATPKIISAVILGMARVIGETM 231
...655.579*********9999999999********************************************************************* PP
TIGR02139 206 svifiagnl 214
++++iagn
MMSYN1_0426 232 AIMMIAGNS 240
********6 PP
== domain 2 score: -3.7 bits; conditional E-value: 4.4
TIGR02139 240 iavvllvisfvlllvi 255
i+++l+++ f++ l+i
MMSYN1_0426 284 IGMFLFILVFIINLLI 299
4444444444433333 PP
== domain 3 score: 32.2 bits; conditional E-value: 4.9e-11
TIGR02139 115 GwigklleelgikvaytklGivvalvfvslPfvvrtvqPvleelekeleeaaaslGasrlqvfrkvilPellpalltGlalafaravGeyGsv 207
G++g + + +k+ ++ + +++++v lP++++ l + + eaa++lG s+ +++ k++lP+ l a++tG+ la+ar +Ge +
MMSYN1_0426 461 GIFGLSVFIIYLKLPFSIFSASITMTIVVLPMLIKNFEDALTSVPLSYREAAIALGLSKTKTLFKIVLPNALQAIITGTILAMARIIGESAPI 553
666667777889999**************************************************************************7665 PP
>> TIGR00969 3a0106s02: sulfate ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.6 15.4 6.6e-07 0.00025 9 225 .. 22 240 .. 12 251 .. 0.76
2 ? -0.1 0.9 0.33 1.2e+02 16 44 .. 278 306 .. 264 328 .. 0.74
3 ! 27.8 15.4 1e-09 3.9e-07 21 220 .. 359 555 .. 338 614 .. 0.67
Alignments for each domain:
== domain 1 score: 18.6 bits; conditional E-value: 6.6e-07
TIGR00969 9 kialvkelklllgiallyvllilllPviallvka.......fskgleeflelltdpaavsal.kltllvaliavllntvfGllvawvlaRy.qFpGkk 97
++ ++k++ ++l+i +l ++l++ll +++ +++ f+ + + + +++ + ++ +tl++ +i+ l+ + + + +++ ++ y + +k
MMSYN1_0426 22 SFVCLKSIIITLTIFVL-LALVILLGFVMIKTNVlfnkqsfFEFVFGKNWSPDSKQFGILTItLMTLILIFISMLIAVPLTIFTSFFISEYlTLKSQK 118
44455544444443333.334444444433322210000124444555555555554444441458888999999999999999999988647999** PP
TIGR00969 98 lldaliDlPFalstvvaGlvlvllygknGwlGellaefdikiifsllGvvlatiFvslPFvvRevePvleelgeeaeeaaatLGasewqtFwrvilPs 195
+ ++i l +++vv Gl + + +G l++ ++ l+ l+++F+++P ++ ++++ + +a +LG s+ +t +i s
MMSYN1_0426 119 VTITIIKLLAGIPSVVFGLF-----A-REQIGALFKLMGASSNDNLMVASLTMAFMAIPIMISLSYDAIKSVPFIYRDASLALGISKEKTTFNIIRKS 210
******************85.....3.45799999999999999999999************************************************ PP
TIGR00969 196 irwallyGvvltfaRalGefGavvvvsgni 225
++ ++ v+l++aR +Ge a+++++gn
MMSYN1_0426 211 ATPKIISAVILGMARVIGETMAIMMIAGNS 240
****************************95 PP
== domain 2 score: -0.1 bits; conditional E-value: 0.33
TIGR00969 16 lklllgiallyvllilllPviallvkafs 44
+ l++i ++ ++l++++ + +l+v +
MMSYN1_0426 278 ESALYAIGMFLFILVFIINLLILFVSNKN 306
34667999999999999999999987544 PP
== domain 3 score: 27.8 bits; conditional E-value: 1e-09
TIGR00969 21 giallyvllilllPviallvkafs....kgl.eeflelltdpaavsalkltllvaliavllntvfGllvawvlaRyqFpGk.....klldaliDlPFa 108
++ +l + ++++ ++++ +f+ + e fl + ++ + +a+ tll+ l + l+ + l+ a l+ +F k k++ l++l +
MMSYN1_0426 359 VLMWLSISFVIMFTFWIVFTTIFNglssLKYsEAFLTIEGEDGIFAAILTTLLLILCTLLFAIPLALACAIYLS--EFANKnsyfaKFFRFLLNLAAS 454
44444445555554444444444321112221345555556666666666666665555555555555554443..3333211111344555555555 PP
TIGR00969 109 lstvvaGlvlvllygknGwlGellaefdikiifsllGvvlatiFvslPFvvRevePvleelgeeaeeaaatLGasewqtFwrvilPsirwallyGvvl 206
++ + G+ ++ + +k+ fs + +++ v lP ++++ e l+++ ++ eaa++LG s+ +t +++lP+ a+++G +l
MMSYN1_0426 455 TPSIIFGIFGLS-----------VFIIYLKLPFSIFSASITMTIVVLPMLIKNFEDALTSVPLSYREAAIALGLSKTKTLFKIVLPNALQAIITGTIL 541
555544443333...........3345689999***************************************************************** PP
TIGR00969 207 tfaRalGefGavvv 220
++aR +Ge + +
MMSYN1_0426 542 AMARIIGESAPIYL 555
********877765 PP
>> TIGR03255 PhnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.2 7.6 0.0088 3.3 104 220 .. 117 237 .. 24 244 .. 0.74
2 ! 31.8 9.1 7.1e-11 2.6e-08 21 226 .. 355 556 .. 341 584 .. 0.78
Alignments for each domain:
== domain 1 score: 5.2 bits; conditional E-value: 0.0088
TIGR03255 104 gklldalvylpsavpsvvlGl....avlvaysakpldlssslaivltvqlvlvlaftyrnvaaalarelavlrevaaslGaspayvlrrvllpllvpa 197
k+ +++ l +++psvv Gl + ++ + l++ ++ + + + a++ + r+++ +lG s +++ p
MMSYN1_0426 117 QKVTITIIKLLAGIPSVVFGLfareQIGALFKLMGASSNDNLMVASLTMAFMAIPIMISLSYDAIKSVPFIYRDASLALGISKEKTTFNIIRKSATPK 214
36666788999*********933222333344444444444444433333455688888999999999999*************************** PP
TIGR03255 198 iraalalslalslGelGatltvy 220
i +a+ l++a +Ge a +++
MMSYN1_0426 215 IISAVILGMARVIGETMAIMMIA 237
*********************95 PP
== domain 2 score: 31.8 bits; conditional E-value: 7.1e-11
TIGR03255 21 avfivlfvlplvvvllsslaqqwsGtilpaGyslrhfeal.....graefdallasleiGlgvallalllGvalalalaleGvkrrgvgklldalvyl 113
++++vl+ l + v++ + ++ i+ sl++ ea+ + f a+l++l + l++ l+a+ l +a a+ l k+ +k+ l+ l
MMSYN1_0426 355 TIMLVLMWLSISFVIMFTFWIVFTT-IFNGLSSLKYSEAFltiegEDGIFAAILTTLLLILCTLLFAIPLALACAIYLSEFANKNSYFAKFFRFLLNL 451
5567777777777777766555544.6555556666555411111234699*********************************************** PP
TIGR03255 114 psavpsvvl...GlavlvaysakpldlssslaivltvqlvlvlaftyrnvaaalarelavlrevaaslGaspayvlrrvllpllvpairaalalslal 208
++ ps++ Gl+v++ y + p + s+ +t ++vl++ +n al+ + re+a +lG s + l +++lp + ai + l++a
MMSYN1_0426 452 AASTPSIIFgifGLSVFIIYLKLPFSIFSASI-TMT---IVVLPMLIKNFEDALTSVPLSYREAAIALGLSKTKTLFKIVLPNALQAIITGTILAMAR 545
******97522279***********9987653.333...45788889999999********************************************* PP
TIGR03255 209 slGelGatltvyppGfat 226
+Ge p + t
MMSYN1_0426 546 IIGESA-------PIYLT 556
999953.......34444 PP
>> TIGR03416 ABC_choXWV_perm: choline ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.6 15.7 0.0062 2.3 22 225 .. 9 237 .. 2 269 .. 0.67
2 ! 25.4 12.4 5.4e-09 2e-06 31 211 .. 344 539 .. 309 547 .. 0.75
3 ? -3.1 0.1 2.6 9.9e+02 21 48 .. 644 671 .. 631 676 .. 0.76
Alignments for each domain:
== domain 1 score: 5.6 bits; conditional E-value: 0.0062
TIGR03416 22 allfdalaavleslieallevlqavppllliallaalalllrrslslallvllglllilnqgyWee..t..vetlalv.lsatvvclviGvPlGiaaa 114
++ f+++ + e+ l +++ + + ++l+al++ l++++ ++++ + +++++++ + + t++l+ l +++++i vPl i+++
MMSYN1_0426 9 NVQFRMIKQKKETSFVCLKSIIITLTIFVLLALVILLGFVMI-KTNVLFNKQSFFEFVFGKNWSPDskQfgILTITLMtLILIFISMLIAVPLTIFTS 105
56688888888888889999999999********99998754.444545555556666666654331121134555431445689**********998 PP
TIGR03416 115 krpklyaamr......PvldlmqtlPtfvyliPa......l.vlfGlGvvPGlia...tvif.vlpapirltklGissvpkelveaakafGatksqll 195
y +++ ++ l+ +P+ v+ + a l l+G l++ t+ f ++p i l++ i+svp +a+ a+G +k ++
MMSYN1_0426 106 FFISEYLTLKsqkvtiTIIKLLAGIPSVVFGLFAreqigaLfKLMGASSNDNLMVaslTMAFmAIPIMISLSYDAIKSVPFIYRDASLALGISKEKTT 203
6555554443222222689**********96544122111313566666666654233444438999*************************999877 PP
TIGR03416 196 lkvelPaalpqi....maGltqtimlslsmvvia 225
+ + +a p+i + G+++ i ++++++ia
MMSYN1_0426 204 FNIIRKSATPKIisavILGMARVIGETMAIMMIA 237
6665555555550000567777776666666665 PP
== domain 2 score: 25.4 bits; conditional E-value: 5.4e-09
TIGR03416 31 vleslieallevlqavppllliallaalalllrrslsla....llvllgllliln.qgyWeetvetlalvlsatvvclviGvPlGi....aaakrpkl 119
+ ++l +++ +++ +v ++l i++++++++++ ++ + l ++l i + g + +++tl l+l + ++++ + + i +a k+ +
MMSYN1_0426 344 TENKLFKKIYSTIMLVLMWLSISFVIMFTFWIVFTTIFNglssLKYSEAFLTIEGeDGIFAAILTTLLLILCTLLFAIPLALACAIylseFANKNSYF 441
445678888888888889999999999988887666554111144556788887526899*******9999887776655555444111167888899 PP
TIGR03416 120 yaamrPvldlmqtlPtfvyliPalvlfGlG.vvP.....GliatvifvlpapirltklGissvpkelveaakafGatksqlllkvelPaalpqimaGl 211
+ r +l+l + P+ ++ i l +f + + P i+ i vlp i+ + ++svp + eaa a+G +k+++l+k+ lP+al i++G
MMSYN1_0426 442 AKFFRFLLNLAASTPSIIFGIFGLSVFIIYlKLPfsifsASITMTIVVLPMLIKNFEDALTSVPLSYREAAIALGLSKTKTLFKIVLPNALQAIITGT 539
999*****************999988876423342111156777899*************************************************95 PP
== domain 3 score: -3.1 bits; conditional E-value: 2.6
TIGR03416 21 aallfdalaavleslieallevlqavpp 48
++ f+ + + l+++i++l + l++++
MMSYN1_0426 644 YKTQFNLFKNSLKQFIKSLKKYLNITNL 671
4567999999999999999999987765 PP
>> TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 6.0 13.4 0.0045 1.7 9 189 .. 32 220 .. 25 233 .. 0.73
2 ? -1.7 0.4 1 3.8e+02 210 243 .. 265 298 .. 263 304 .. 0.89
3 ! 25.4 13.0 5.6e-09 2.1e-06 8 192 .. 356 543 .. 346 551 .. 0.80
4 ? -1.6 0.2 0.92 3.4e+02 13 64 .. 602 661 .. 592 669 .. 0.39
Alignments for each domain:
== domain 1 score: 6.0 bits; conditional E-value: 0.0045
TIGR01097 9 llllllvalvvlalaelelslarllagleqlaellaellppdwsylpkilkalleTlaiallgtllaavlalplallaArnltpspllsllvrlllnl 106
+l++++++++v+ l + ++ + l+++ + + ++ + ++pd ++ il+ +l Tl + ++++l+a+ l+++ +++ ++ lt + + ++ ++++l
MMSYN1_0426 32 TLTIFVLLALVILLGFVMIKTNVLFNKQSFFEFVFGKNWSPDSKQ-FGILTITLMTLILIFISMLIAVPLTIFTSFFISEYLTLKS--QKVTITIIKL 126
333333333344444444455567766555555667788888777.468899999**************************99988..899999**** PP
TIGR01097 107 lRavpelvlAli.......fvaavGlGp....laGvLAlalhtvGvlgklfaeaiEevdegpvealratGasklqvivygvlPqvlpeflsltl 189
l +p++v++l + +++G ++ + + L++a++ + ++ l ++ai +v +a a G sk ++++ + +++p+++s ++
MMSYN1_0426 127 LAGIPSVVFGLFareqigaLFKLMGASSndnlMVASLTMAFMAIPIMISLSYDAIKSVPFIYRDASLALGISKEKTTFNIIRKSATPKIISAVI 220
**********982222222344555554333356789999999999999999999999999999999999888877777777777777777665 PP
== domain 2 score: -1.7 bits; conditional E-value: 1
TIGR01097 210 IGleLaeaiklfeydevsaillvilvvvvlidll 243
IGle+ e+ ++ + + ai ++++++v++i+ll
MMSYN1_0426 265 IGLEMLENSSSLHESALYAIGMFLFILVFIINLL 298
899999999999999999999999****999876 PP
== domain 3 score: 25.4 bits; conditional E-value: 5.6e-09
TIGR01097 8 lllllllvalvvlalaelelslarllagleqlaellaellppdwsylpkilkalleTlaiallgtllaavlalplallaArnltpspllsllvrllln 105
++l+l+ + + ++ ++++ + ++++++gl++l ++ + +l+ + + i+ a+l Tl + l+ l+a+ lal+ a+ ++ + ++ + +r+lln
MMSYN1_0426 356 IMLVLMWLSISFVIMFTFWIVFTTIFNGLSSL-KYSEAFLTIEGED--GIFAAILTTLLLILCTLLFAIPLALACAIYLSEFANKNSYFAKFFRFLLN 450
33333333333444555555555555555443.4556666655554..8************************************************* PP
TIGR01097 106 llRavpelvlAl....ifvaavG..lGplaGvLAlalhtvGvlgklfaeaiEevdegpvealratGasklqvivygvlPqvlpeflsltlyrl 192
l+ + p++++++ +f++ + ++ +++ +++++ + +l k f +a+ +v + ea a G sk+++++ vlP++l++++ t++++
MMSYN1_0426 451 LAASTPSIIFGIfglsVFIIYLKlpFSIFSASITMTIVVLPMLIKNFEDALTSVPLSYREAAIALGLSKTKTLFKIVLPNALQAIITGTILAM 543
**********99555556666552279********************************************************9998887765 PP
== domain 4 score: -1.6 bits; conditional E-value: 0.92
TIGR01097 13 llvalvvlalaelels..larllagle.qlaellaellppd.....wsylpkilkalleT 64
++++++l+l++ +ls l + ++++ ++ ++ +++++++ ++ +++ lk+++++
MMSYN1_0426 602 TIIFVLTLNLSSSKLSllLVKTNKKVKfEFKQIYKNFINKQfyktqFNLFKNSLKQFIKS 661
222222333333333311222222222133344444444443333344455555555555 PP
>> TIGR01183 ntrB: nitrate ABC transporter, permease protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.3 1.2 0.00025 0.095 91 162 .. 168 238 .. 145 258 .. 0.74
2 ! 19.9 2.4 2.9e-07 0.00011 72 146 .. 465 543 .. 391 550 .. 0.68
Alignments for each domain:
== domain 1 score: 10.3 bits; conditional E-value: 0.00025
TIGR01183 91 taiwpiiinta.vgvqqipqdynnvarvlklsksdyllkvllpaavpyiftglriaiglswlaivaaelliag 162
a pi+i + ++ +p y++ + l +sk++ ++++ +a p i++ + +++ +a ++iag
MMSYN1_0426 168 MA-IPIMISLSyDAIKSVPFIYRDASLALGISKEKTTFNIIRKSATPKIISAVILGMARVIGETMAI-MMIAG 238
33.488887652689**********************************998776665544444444.33333 PP
== domain 2 score: 19.9 bits; conditional E-value: 2.9e-07
TIGR01183 72 ialvafqdaepaaifvifit...aiwpiii.ntavgvqqipqdynnvarvlklsksdyllkvllpaavpyiftglriai 146
+++ ++ + p +if it + p++i n + +p y++ a l lsk++ l+k++lp a+ i+tg +a+
MMSYN1_0426 465 LSVFIIYLKLPFSIFSASITmtiVVLPMLIkNFEDALTSVPLSYREAAIALGLSKTKTLFKIVLPNALQAIITGTILAM 543
44455555667777766555222478988835667899************************************87775 PP
>> TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.5 22.4 0.027 10 9 211 .. 34 240 .. 26 308 .. 0.71
2 ! 22.1 16.9 5.8e-08 2.2e-05 4 204 .. 359 553 .. 352 615 .. 0.66
Alignments for each domain:
== domain 1 score: 3.5 bits; conditional E-value: 0.027
TIGR02140 9 algll.vlllllPlllvfsea.......fekGvevffeaisdpdalsalkl.tllvvlivvPlnlvfGvavawvlarf.rfpGkkllltlidlPfsvs 96
+++ l +l++ll +++ ++ fe +++ ++ s++ + +++l tl+++ i++ + + + +++++ ++ + ++ +k+ +t+i l +
MMSYN1_0426 34 TIFVLlALVILLGFVMIKTNVlfnkqsfFEFVFGKNWSPDSKQFGILTITLmTLILIFISMLIAVPLTIFTSFFISEYlTLKSQKVTITIIKLLAGIP 131
333320233333333333333100001133333333333333333334443267778888889999999******99747899*************** PP
TIGR02140 97 PvvaGlvlvllfgsagllgevleekdlkiifalPgivlatlfvtlPfvareliPvleeqGteeeeaaltlGasawqvflrvtlPnikwgllyGviltn 194
vv Gl g+ l ++ +l + + + + + +++ l + a +P + +a+l lG s+ ++ ++++ + ++ vil
MMSYN1_0426 132 SVVFGLFAREQIGALFKLMGASSNDNLMVASLTMAFMAIPIMISLSYDAIKSVPFI------YRDASLALGISKEKTTFNIIRKSATPKIISAVILGM 223
*****976655555555555444444444444444444455555666565555555......568********************************* PP
TIGR02140 195 aralGefGavsvvsgni 211
ar++Ge a+ +++gn
MMSYN1_0426 224 ARVIGETMAIMMIAGNS 240
************99975 PP
== domain 2 score: 22.1 bits; conditional E-value: 5.8e-08
TIGR02140 4 lliavalgllvlllllPlllvfseafekGve......vffeaisdpdalsalkltllvvliv....vPlnlvfGvavawvlarfrfpGkkllltlidl 91
+l++++++++++ + ++ +++ +G++ +f++ + + +a+ tll++l + +Pl l + ++ ++ + k++ l++l
MMSYN1_0426 359 VLMWLSISFVIM----FTFWIVFTTIFNGLSslkyseAFLTIEGEDGIFAAILTTLLLILCTllfaIPLALACAIYLSEFANKNSYFA-KFFRFLLNL 451
333444444443....333333344444443120110333333344445555555555554411113444444444444444444433.345556666 PP
TIGR02140 92 PfsvsPvvaGlvlvllfgsagllgevleekdlkiifalPgivlatlfvtlPfvareliPvleeqGteeeeaaltlGasawqvflrvtlPnikwgllyG 189
s ++ G+ g + lk+ f++ + ++ v lP+++++ l + + eaa+ lG s+ +++++++lPn +++ G
MMSYN1_0426 452 AASTPSIIFGIF-----------GLSVFIIYLKLPFSIFSASITMTIVVLPMLIKNFEDALTSVPLSYREAAIALGLSKTKTLFKIVLPNALQAIITG 538
666666655543...........33333345667777777778888899************************************************* PP
TIGR02140 190 viltnaralGefGav 204
il+ ar +Ge +
MMSYN1_0426 539 TILAMARIIGESAPI 553
***********7655 PP
>> TIGR03004 ectoine_ehuC: ectoine/hydroxyectoine ABC transporter, permease protein EhuC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.2 0.7 1.9 7.2e+02 174 203 .. 22 51 .. 9 57 .. 0.61
2 ? -3.1 6.5 3.6 1.3e+03 12 140 .. 84 218 .. 77 239 .. 0.67
3 ? -0.7 0.2 0.69 2.6e+02 179 200 .. 351 374 .. 320 393 .. 0.63
4 ! 18.0 5.6 1.3e-06 0.00048 62 139 .. 466 537 .. 400 556 .. 0.69
Alignments for each domain:
== domain 1 score: -2.2 bits; conditional E-value: 1.9
TIGR03004 174 tletlkvfalilllyfvmallislalrvle 203
++ lk ++l ++ +al+i l++ +++
MMSYN1_0426 22 SFVCLKSIIITLTIFVLLALVILLGFVMIK 51
445555666666666666777766665555 PP
== domain 2 score: -3.1 bits; conditional E-value: 3.6
TIGR03004 12 vvtlqitllgsvlavvvaflaglgrlstfralr..alavvyievfrGt.sllvqlfwlyfvlPliglelsPltvgvlalglhvGayGaeiv....rGa 102
++tl + ++++++av ++++ ++ +s++ +l+ ++++ i+++ G s++ lf + l+ l + +++ +l + i+ a
MMSYN1_0426 84 LMTLILIFISMLIAVPLTIFTSFF-ISEYLTLKsqKVTITIIKLLAGIpSVVFGLFAREQIGALFKLMGASSNDNLMVASLTMAFMAIPIMislsYDA 180
566667777777777666665554.5666665422577788888888646777788777777776665555555555544444444444441111679 PP
TIGR03004 103 vksvakeqleaaialnltrlqalrrivlPqallemlpa 140
+ksv ++a+ al + + ++ ++i+ a +++++a
MMSYN1_0426 181 IKSVPFIYRDASLALGISKEKTTFNIIRKSATPKIISA 218
99999999*******99999999999988888887766 PP
== domain 3 score: -0.7 bits; conditional E-value: 0.69
TIGR03004 179 kvfalil..llyfvmallislalr 200
k++++i+ l+++ ++++i+ ++
MMSYN1_0426 351 KIYSTIMlvLMWLSISFVIMFTFW 374
567666511355566666665544 PP
== domain 4 score: 18.0 bits; conditional E-value: 1.3e-06
TIGR03004 62 qlfwlyfvlPliglelsPltvgvlalglhvGayGaeivrGavksvakeqleaaialnltrlqalrrivlPqallemlp 139
+f +y lP+ +t+++++l + + + a+ sv +eaaial l + ++l++ivlP+al ++++
MMSYN1_0426 466 SVFIIYLKLPFSI-FSASITMTIVVLPMLIKNF-----EDALTSVPLSYREAAIALGLSKTKTLFKIVLPNALQAIIT 537
4577788888754.4466889999999999887.....579*******************************998764 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (696 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 496 (0.110517); expected 89.8 (0.02)
Passed bias filter: 67 (0.0149287); expected 89.8 (0.02)
Passed Vit filter: 16 (0.00356506); expected 4.5 (0.001)
Passed Fwd filter: 13 (0.00289661); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 12 [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.24
# Mc/sec: 4164.52
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0426 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0427 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0427.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0427/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0427 [L=269]
Description: phosphate ABC transporter, ATP-binding protein 5=Equivalog Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-116 385.1 0.1 3.2e-116 384.9 0.1 1.0 1 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
7.7e-46 154.4 0.1 9.5e-46 154.1 0.1 1.0 1 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
1.1e-41 141.0 0.1 1.3e-41 140.8 0.1 1.0 1 TIGR04520 ECF_ATPase_1: energy-coupling factor transporter A
6.4e-41 138.6 0.3 8.2e-41 138.3 0.3 1.0 1 TIGR01186 proV: glycine betaine/L-proline transport ATP bind
1.1e-40 137.4 0.0 1.4e-40 137.1 0.0 1.1 1 TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transport
4.7e-38 129.3 0.0 5.8e-38 129.0 0.0 1.0 1 TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transp
8.8e-38 128.2 0.0 1.1e-37 127.8 0.0 1.0 1 TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-bindi
1.6e-37 127.2 0.0 2e-37 126.9 0.0 1.1 1 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
7.2e-36 121.8 0.0 8.8e-36 121.5 0.0 1.1 1 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
9e-36 121.5 0.0 1e-35 121.3 0.0 1.0 1 TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-bindin
2.4e-35 120.4 0.0 2.8e-35 120.2 0.0 1.0 1 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
6e-34 115.5 0.0 7.5e-34 115.2 0.0 1.1 1 TIGR01187 potA: polyamine ABC transporter, ATP-binding prote
3.3e-33 112.8 0.0 3.9e-33 112.6 0.0 1.0 1 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
7.5e-33 112.0 0.0 9.6e-33 111.6 0.0 1.0 1 TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system
1.7e-32 110.8 0.0 2.1e-32 110.5 0.0 1.0 1 TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding pr
2.2e-32 110.3 0.0 2.7e-32 110.0 0.0 1.1 1 TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC trans
4.1e-32 109.5 0.0 5.2e-32 109.2 0.0 1.1 1 TIGR02673 FtsE: cell division ATP-binding protein FtsE
5e-32 109.2 0.0 6.1e-32 109.0 0.0 1.0 1 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
1e-31 108.2 0.0 1.2e-31 107.9 0.0 1.1 1 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
2.9e-31 106.6 0.0 3.6e-31 106.3 0.0 1.0 1 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
1.3e-30 104.3 0.0 1.6e-30 104.0 0.0 1.1 1 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
1.6e-29 100.9 0.8 1.8e-29 100.7 0.8 1.0 1 TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
2e-29 100.8 0.1 2.4e-29 100.5 0.1 1.0 1 TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP
4e-29 99.3 0.0 5.3e-29 99.0 0.0 1.0 1 TIGR00958 3a01208: antigen peptide transporter 2
4.4e-29 99.2 0.0 5.7e-29 98.8 0.0 1.0 1 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
1.8e-28 97.1 0.0 2e-28 97.0 0.0 1.0 1 TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC trans
3.8e-28 96.2 0.0 4.5e-28 96.0 0.0 1.0 1 TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding p
4.5e-28 96.1 0.0 5.3e-28 95.9 0.0 1.0 1 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
8.4e-28 95.6 0.0 1.1e-27 95.2 0.0 1.1 1 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
9.7e-27 91.7 0.2 1.4e-26 91.2 0.2 1.1 1 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
5.4e-26 89.3 0.1 7.1e-26 88.9 0.1 1.0 1 TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-bi
3.6e-25 86.8 0.0 4.5e-25 86.5 0.0 1.1 1 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
1.2e-24 85.2 0.0 2.5e-24 84.1 0.0 1.4 1 TIGR02769 nickel_nikE: nickel import ATP-binding protein Nik
5.2e-24 82.9 0.0 7e-24 82.5 0.0 1.1 1 TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-bi
8.3e-24 82.3 0.0 9.7e-24 82.1 0.0 1.0 1 TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit,
3.2e-23 80.5 0.0 4.7e-23 80.0 0.0 1.2 1 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
6.2e-23 79.2 0.0 8e-23 78.8 0.0 1.0 1 TIGR01192 chvA: glucan exporter ATP-binding protein
8.1e-23 79.2 0.9 1.1e-22 78.8 0.9 1.1 1 TIGR03740 galliderm_ABC: lantibiotic protection ABC transpor
2.1e-22 77.8 0.2 4e-22 76.9 0.2 1.4 1 TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding protei
4.3e-22 76.9 0.3 5.3e-22 76.6 0.3 1.1 1 TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC tran
2.6e-21 74.0 0.0 5.1e-21 73.0 0.0 1.4 1 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
4.5e-21 72.9 0.1 5.8e-21 72.6 0.1 1.0 1 TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system
1e-20 71.7 0.0 2e-20 70.8 0.0 1.4 1 TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
4.5e-20 70.3 0.0 6.6e-20 69.7 0.0 1.2 1 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
1.3e-18 65.2 0.0 1.9e-18 64.7 0.0 1.2 1 TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein
6.5e-17 59.3 0.3 2.4e-16 57.4 0.3 1.7 1 TIGR00955 3a01204: pigment precursor permease
1.5e-15 53.2 0.0 1.8e-15 52.9 0.0 1.0 1 TIGR01257 rim_protein: rim ABC transporter
2.1e-15 54.8 0.0 2.9e-15 54.4 0.0 1.2 1 TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein
2.9e-15 54.0 0.0 3.4e-15 53.8 0.0 1.1 1 TIGR01288 nodI: nodulation ABC transporter NodI
7.2e-14 49.1 0.0 9.8e-14 48.6 0.0 1.1 1 TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protei
9e-14 49.6 0.1 3.3e-09 34.7 0.1 2.1 2 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
1.1e-13 48.6 0.2 1.9e-08 31.3 0.0 2.1 2 TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD f
2.3e-13 48.1 0.2 5.3e-13 46.9 0.2 1.5 1 TIGR01978 sufC: FeS assembly ATPase SufC
3.2e-13 46.0 0.1 3.6e-13 45.9 0.1 1.0 1 TIGR01271 CFTR_protein: cystic fibrosis transmembrane conduc
3.9e-13 45.7 0.0 1.3e-12 43.9 0.0 1.6 1 TIGR00957 MRP_assoc_pro: multi drug resistance-associated pr
7.7e-12 42.4 0.0 1.2e-11 41.7 0.0 1.2 1 TIGR00954 3a01203: peroxysomal long chain fatty acyl transpo
3.6e-10 36.1 0.3 4.2e-06 22.6 0.1 2.0 2 TIGR00956 3a01205: pleiotropic drug resistance family protei
1.5e-09 34.9 0.2 0.00013 18.6 0.0 2.1 2 TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
9.2e-07 25.4 0.6 0.0056 12.8 0.0 2.1 2 TIGR00630 uvra: excinuclease ABC subunit A
0.0037 14.8 0.1 0.0056 14.2 0.1 1.3 1 TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase
0.007 12.9 0.1 0.0099 12.4 0.1 1.1 1 TIGR00602 rad24: checkpoint protein rad24
0.0081 14.4 0.1 0.024 12.8 0.1 1.9 1 TIGR02528 EutP: ethanolamine utilization protein, EutP
0.0091 13.2 0.1 0.021 12.0 0.0 1.7 2 TIGR02858 spore_III_AA: stage III sporulation protein AA
------ inclusion threshold ------
0.011 13.2 0.0 0.018 12.5 0.0 1.2 1 TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
0.018 13.0 0.1 0.03 12.2 0.1 1.3 1 TIGR03499 FlhF: flagellar biosynthesis protein FlhF
0.021 11.0 0.7 0.05 9.7 0.2 1.7 2 TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer AT
0.024 11.0 0.2 0.035 10.5 0.2 1.1 1 TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
0.05 10.7 0.5 0.17 9.0 0.0 1.8 2 TIGR00611 recf: DNA replication and repair protein RecF
Domain annotation for each model (and alignments):
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 384.9 0.1 4.8e-118 3.2e-116 2 247 .. 21 268 .. 20 269 .] 0.98
Alignments for each domain:
== domain 1 score: 384.9 bits; conditional E-value: 4.8e-118
TIGR00972 2 levknlklfyge..kealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpms 97
+e+k++++fy++ ++l ++n+eik++++t++iGpsGcGk+tll+s+nrlndl+++v+++G + + +kdi+dk++d+++lr++vGmvfqkpnpfp+s
MMSYN1_0427 21 IEIKDFNFFYNKgkTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIDGVKMSGVIKIFDKDIFDKDIDITKLRTEVGMVFQKPNPFPIS 118
899*******7622679********************************************************************************* PP
TIGR00972 98 iydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkyt 195
iydnv+yglr gikdkk ld+i eesL kaalwdevkd l + al+LsGGqqqrlciara+a++P++lL+DePtsaLDpiat k+eel+ +Lkk+yt
MMSYN1_0427 119 IYDNVVYGLRSLGIKDKKILDQICEESLVKAALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKDYT 216
************************************************************************************************** PP
TIGR00972 196 ivivthnmqqaarvsdktaffleGelveegeteqifekpkekktedyisgkf 247
iv+vth++qqa+r+sd+t +fl+Gelve ++t++if++pk+++te+yisg++
MMSYN1_0427 217 IVMVTHSLQQATRISDYTGYFLKGELVEFNKTKKIFTNPKDRRTENYISGRY 268
**************************************************96 PP
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 154.1 0.1 1.4e-47 9.5e-46 1 238 [. 21 257 .. 21 264 .. 0.89
Alignments for each domain:
== domain 1 score: 154.1 bits; conditional E-value: 1.4e-47
TIGR04521 1 iklknvsyiYqkgtpfekkalkdvsleiekgefvaiiGhtGsGKstliqhlngL...lk..ptsGeveidgleikakkkkkkklkelrkkvglvFQfp 93
i++k+ ++ Y+kg +++l ++++ei+++++++ iG +G GK+tl++ +n L + sG ++i +++i +k+ ++++lr +vg+vFQ p
MMSYN1_0427 21 IEIKDFNFFYNKGK---TQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLndlIDgvKMSGVIKIFDKDI---FDKDIDITKLRTEVGMVFQKP 112
7999******9995...79****************************987766522154336789999*****9...6677779************** PP
TIGR04521 94 ekQLFeetvlkdiafgpknlglseeeveerv.kealelvgld...eellerspfeLSGGqkrrvAiagvLamepevLvlDEptaGLDpkgrkellell 187
+ F ++++++++g ++lg++++++ +++ +e l + l +++l+ ++ LSGGq++r+ ia +am+p++L++DEpt+ LDp + ++ el+
MMSYN1_0427 113 NP--FPISIYDNVVYGLRSLGIKDKKILDQIcEESLVKAALWdevKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELV 208
97..********************999776626677777776244566777789******************************************** PP
TIGR04521 188 kklkkekgktvilvtHsmedvaeladrvivlkkGkvvldgtpeevfkeeee 238
+lkk+ t+++vtHs++++++++d + kG++v ++++++f++ +
MMSYN1_0427 209 LDLKKD--YTIVMVTHSLQQATRISDYTGYFLKGELVEFNKTKKIFTNPKD 257
***998..9*************************************98765 PP
>> TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 140.8 0.1 2e-43 1.3e-41 1 227 [. 21 255 .. 21 262 .. 0.87
Alignments for each domain:
== domain 1 score: 140.8 bits; conditional E-value: 2e-43
TIGR04520 1 ievenvsfkYeeeekkalkdvsleiekgefvaiiGhNGsGKsTlakllngll.....lpeegkvlvdgletleee.nlweirkkvglvfqnPdnqlvg 92
ie+++ +f Y++ +++ l ++++ei++++ ++ iG G+GK+Tl k +n l ++ +g +++ + + +++ ++++r++vg+vfq P+ +
MMSYN1_0427 21 IEIKDFNFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNdlidgVKMSGVIKIFDKDIFDKDiDITKLRTEVGMVFQKPNPFPI- 117
899*******************************************99887521232356799***9999877663799*************88655. PP
TIGR04520 93 atveedvaFglENlgvpreeikkrv.eealkkv....gleefrkkepkkLSGGqkqrvaiagvlalepeiiilDEatsmLDpkgrkevletvkklkke 185
+ ++v +gl lg++ ++i +++ ee+l k +++++ ++ + LSGGq+qr++ia ++a++p+i+++DE+ts LDp + +v e+v +lkk
MMSYN1_0427 118 -SIYDNVVYGLRSLGIKDKKILDQIcEESLVKAalwdEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK- 213
.589**************9998776356666651222456777888899**********************************************96. PP
TIGR04520 186 ekltvisitHdleeave.adrvivlekgkivaegtpkeifskk 227
+ t++++tH+l++a++ +d + kg++v+ ++ k+if++
MMSYN1_0427 214 -DYTIVMVTHSLQQATRiSDYTGYFLKGELVEFNKTKKIFTNP 255
.579*********9986489999*****************975 PP
>> TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 138.3 0.3 1.2e-42 8.2e-41 4 231 .. 33 265 .. 31 268 .. 0.86
Alignments for each domain:
== domain 1 score: 138.3 bits; conditional E-value: 1.2e-42
TIGR01186 4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrllnrl...ie..PtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislgl 96
G ++++ ++++ei+e i +iG+sG+Gk+tl++ +nrl i+ +G i i +di + + + r ++mv+qk fP +i dn+ +gl
MMSYN1_0427 33 GKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLndlIDgvKMSGVIKIFDKDIFDKDIDIT--KLRTEVGMVFQKPNPFP-ISIYDNVVYGL 127
7888999******************************973325522357889999999987654322..34899************.68********* PP
TIGR01186 97 ellkideqerkek.alealklvdl.eeyedry..Pd.elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
+ l+i++++ ++ e+l + l +e +d P lsGG+qqr+ +ara+a++P++llmde+ saldP+ ++ + +++l+k + tiv++th
MMSYN1_0427 128 RSLGIKDKKILDQiCEESLVKAALwDEVKDILtsPAlGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK--DYTIVMVTHS 223
*****999987662678899988888888755113337**********************************99999888888876..67******** PP
TIGR01186 190 ldealrlgdrivilkaGeivqvGtPdeilrnPaneyveefie 231
l +a r++d + +Ge+v +i++nP + e++i
MMSYN1_0427 224 LQQATRISDYTGYFLKGELVEFNKTKKIFTNPKDRRTENYIS 265
**********************************99999886 PP
>> TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 137.1 0.0 2.1e-42 1.4e-40 12 248 .. 34 265 .. 21 268 .. 0.87
Alignments for each domain:
== domain 1 score: 137.1 bits; conditional E-value: 2.1e-42
TIGR03005 12 eltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvt 109
+ + l ++++e+++ + iGpsG Gk+t+l+ + l+ + +G +k+ g + k ++ ++ + k+r ++Gmvfq+ n fp ++ dnv+
MMSYN1_0427 34 KTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIDG-VKMSGVIKIFDK----DI-FDKDIDITKLRTEVGMVFQKPNPFPI-SIYDNVV 124
55677889999*99999************************999.678787777666....44.3566789******************5.799**99 PP
TIGR03005 110 eapvlvkGvaraeaekrave.lldmvGladkadal...pa.qlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmll 202
++ +G++ + ++ e l l d + + pa lsGGq+qr+ iara+a++pk+ll+de+tsaldp +v +++ +l +d t+++
MMSYN1_0427 125 Y-GLRSLGIKDKKILDQICEeSLVKAALWDEVKDIltsPAlGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLK--KDYTIVM 219
7.69******99998877642677777878776542335436************************************9**99999985..6899*** PP
TIGR03005 203 vthemgfarefadrvlffdkGkiveeGkpdeifrkpkeertreflk 248
vth ++ a ++d +f kG +ve k ++if +pk+ rt+++++
MMSYN1_0427 220 VTHSLQQATRISDYTGYFLKGELVEFNKTKKIFTNPKDRRTENYIS 265
******************************************9986 PP
>> TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 129.0 0.0 8.8e-40 5.8e-38 15 235 .. 33 264 .. 17 267 .. 0.80
Alignments for each domain:
== domain 1 score: 129.0 bits; conditional E-value: 8.8e-40
TIGR03265 15 eaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLek.....qdaGaillggrditrl....ppqkrdyGivfqsYaLfPnltvaeniayGLkn 103
++++ l +i++++k+ + +++GPsGCGkttLL+ i L++ + +G i + ++di + + + + G+vfq fP + + +n+ yGL++
MMSYN1_0427 33 GKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIFDKdidiTKLRTEVGMVFQKPNPFP-ISIYDNVVYGLRS 129
48999*********************************9863333367899999999997651111455679************.89*********** PP
TIGR03265 104 kklkreevaerv.eelLelvglsgs.ee..kyPg.qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqe 196
++k +++ +++ ee L l + ++ P+ lsGGqqqr+ +ara+a++P++LL+DeP saLD k+ e + +l k + t +mvth +
MMSYN1_0427 130 LGIKDKKILDQIcEESLVKAALWDEvKDilTSPAlGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDL--KKDYTIVMVTHSLQ 225
**9999988777356666666655404422346546********************************98766665555555..557799******** PP
TIGR03265 197 ealslaDrivvmnkgkieqvgtPeeiYeqPatkfvadfv 235
a ++D kg++ ++i+++P+ + +++
MMSYN1_0427 226 QATRISDYTGYFLKGELVEFNKTKKIFTNPKDRRTENYI 264
******************************988666665 PP
>> TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.8 0.0 1.7e-39 1.1e-37 34 265 .. 32 264 .. 25 267 .. 0.86
Alignments for each domain:
== domain 1 score: 127.8 bits; conditional E-value: 1.7e-39
TIGR03415 34 tGlvlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdea.tlrklrtkrvsmvfqkfallPWrtveenvafG 130
G++ + +++++++e i+ ++G sG Gk++ll+++n+ln + G v+++ k d d++ ++ klrt +v mvfqk +P ++ +nv +G
MMSYN1_0427 32 KGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIDG-VKMSGVIKIFDKDIFDKDiDITKLRT-EVGMVFQKPNPFP-ISIYDNVVYG 126
5777788899*********************************998.56666666666555555425678887.59********999.68******** PP
TIGR03415 131 lelsGvakaerrkrveeqlelvglaeWadkk......vgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvs 222
l G+ +++ +++ e+ lv a W + k + lsGG qqr+ +ara+a++ +illmdeP saldP+ k+ + +l+l k tiv+v+
MMSYN1_0427 127 LRSLGIKDKKILDQICEE-SLVKAALWDEVKdiltspALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDL--KKDYTIVMVT 221
************999886.689999998876333333468*********************************9776666555555..5578****** PP
TIGR03415 223 hdldealklGnriaimegGrivqlgtpeeivlkPaneyvadfv 265
h l++a ++ + +G +v +++++i ++P++ ++++
MMSYN1_0427 222 HSLQQATRISDYTGYFLKGELVEFNKTKKIFTNPKDRRTENYI 264
***********************************98887777 PP
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.9 0.0 3e-39 2e-37 2 225 .. 21 243 .. 20 259 .. 0.86
Alignments for each domain:
== domain 1 score: 126.9 bits; conditional E-value: 3e-39
TIGR02315 2 levenlskvypngk.qalknvnleikkGelvaviGlsGaGkstllrsinrlve.....issgsillegkevtklkkkelrklrkkigmifqeynlier 93
+e+++ + y++gk q+l n+n+eik+ +++ iG+sG Gk+tll+sinrl++ + sg i++ +k++ k+ ++ klr+++gm+fq+ n
MMSYN1_0427 21 IEIKDFNFFYNKGKtQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIF-DKDIDITKLRTEVGMVFQKPNPFP- 116
789999999*9875389***********************************96666666779999999999.57889****************985. PP
TIGR02315 94 ltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkri 191
++ +nv+ g + k++l + ee kA + ++++ ++ a LsGGqqqR+ iaRa+a +pk++l DEP+++LDp ++ +v +l+ ++
MMSYN1_0427 117 ISIYDNVVYGLRSLGIKDKKILDQICEESLVKAAL-WD--EVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDL 211
789*******9999989999****99999988864.34..467899999**********************************************999 PP
TIGR02315 192 nkekgitvivnlHqvdlakkyadrivglkageiv 225
k + t+++ H+++ a++ +d + +ge+v
MMSYN1_0427 212 KK--DYTIVMVTHSLQQATRISDYTGYFLKGELV 243
76..567788889*99999988876666666666 PP
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 121.5 0.0 1.3e-37 8.8e-36 2 201 .. 21 223 .. 20 242 .. 0.82
Alignments for each domain:
== domain 1 score: 121.5 bits; conditional E-value: 1.3e-37
TIGR02982 2 ikirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsv.....qeGelkvlgkelkgasekelvqvrrkiGyifqahnll 94
i+i++ n +y+kg+ +q lf+in+ei++ i + GpsG+Gkttll i l + +G +k+++k++ + + +++++r ++G++fq+ n +
MMSYN1_0427 21 IEIKDFNFFYNKGK--TQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLidgvkMSGVIKIFDKDIFDK-DIDITKLRTEVGMVFQKPNPF 115
89*********995..688********************************99987222224678********985.6799***************99 PP
TIGR02982 95 esltaeqnvrmalelkeklsakeakakaeelleavglee....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqkla 188
+ +nv +l +k + +ee l + l + l + lsgGq+qr+ iara++ +Pk++l dePt+ald ++ +v el+ +l
MMSYN1_0427 116 P-ISIYDNVVYGLRSLGIKDKKILDQICEESLVKAALWDevkdILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLK 212
7.5788999988765554455666677777787777766222134444569*******************************************9986 PP
TIGR02982 189 reqgttillvthd 201
+ ti++vth
MMSYN1_0427 213 K--DYTIVMVTHS 223
6..579******6 PP
>> TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 121.3 0.0 1.5e-37 1e-35 3 242 .. 22 265 .. 20 269 .] 0.82
Alignments for each domain:
== domain 1 score: 121.3 bits; conditional E-value: 1.5e-37
TIGR02314 3 klekiskvfdqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsg.....avivdgkdlttlsnaelvkarrqigmifqhfnlls 95
++++ + ++ + k ++l n+++ + + i ig sg gk+tl++ +n l+ +g + + kd+ ++ +++k r ++gm+fq+ n +
MMSYN1_0427 22 EIKDFNFFYN--KGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIDGvkmsgVIKIFDKDIF-DKDIDITKLRTEVGMVFQKPNPFP 116
5555553333..335689********************************99987666111103444455554.4789*****************986 PP
TIGR02314 96 srtvfgnvalplelentpkekikrkv.tellalvglsdk.kdsyps...nlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinr 188
++++nv l + +ki ++ +e l l d kd s lsggq+qr+ iara+a +pk+ll de tsaldp +t + el+ ++ +
MMSYN1_0427 117 -ISIYDNVVYGLRSLGIKDKKILDQIcEESLVKAALWDEvKDILTSpalGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK 213
.579********87777666665555166777777765426644332247*******************************************99987 PP
TIGR02314 189 rlgltillithemdvvkricdevavidkgeliekgtvseifshpktelakkfir 242
+ ti+++th ++ ri d kgel+e + +if++pk + ++++i
MMSYN1_0427 214 --DYTIVMVTHSLQQATRISDYTGYFLKGELVEFNKTKKIFTNPKDRRTENYIS 265
..5799****************************************99999986 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 120.2 0.0 4.2e-37 2.8e-35 306 523 .. 5 230 .. 1 234 [. 0.83
Alignments for each domain:
== domain 1 score: 120.2 bits; conditional E-value: 4.2e-37
TIGR02857 306 qpeaekapltaaassslelenvsvay.egrkpalkevsltvepgelvalvGaSGaGKstllklllgfve.....pteGailvngael..aeldadswr 395
q +++p ++ ++++e+++ ++ y +g+++ l +++++++ ++++ +G+SG+GK+tllk + ++ + +G i++ ++++ +++d ++r
MMSYN1_0427 5 QLITNTKPKKEPLKTAIEIKDFNFFYnKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIfdKDIDITKLR 102
4555666777777779**********88888********************************999976222224678999988888334677779** PP
TIGR02857 396 kqiawvpQkPllfegtvaenir..larkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDa 491
+++ v QkP f+ ++ +n+ l++ + +++++ + + + l + +al + ++ + + + gLSgGq+qRl +Ara++ + ++ll+DEPt++LD+
MMSYN1_0427 103 TEVGMVFQKPNPFPISIYDNVVygLRSLGIKDKKILDQICEESL--VKAALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDP 198
*********************93344555566655444443333..3456778889999*************************************** PP
TIGR02857 492 eteaevlealrelaegrtvllvaHrlalaela 523
+ +v+e + +l + t+++v+H+l+ a+++
MMSYN1_0427 199 IATLKVEELVLDLKKDYTIVMVTHSLQQATRI 230
*************************9988765 PP
>> TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 115.2 0.0 1.1e-35 7.5e-34 2 201 .. 54 264 .. 53 267 .. 0.80
Alignments for each domain:
== domain 1 score: 115.2 bits; conditional E-value: 1.1e-35
TIGR01187 2 LGpsGsGkttlLrllaGleel.....dsGkilldgedvtev....paekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikerv.keaLelvq 89
+GpsG+GkttlL+ + l++l sG i++ ++d+ + + + +v++vfq fP +++ +nv +gL+ +++ ++i +++ +e L
MMSYN1_0427 54 IGPSGCGKTTLLKSINRLNDLidgvkMSGVIKIFDKDIFDKdidiTKLRTEVGMVFQKPNPFP-ISIYDNVVYGLRSLGIKDKKILDQIcEESLVKAA 150
7*************9999876222224788999999997641111556778************.89************99998887766245565554 PP
TIGR01187 90 l....eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqig 183
l +++ ++ lsGGq+qr+ +ara++ kPkiLL+Dep saLD ++ + + +l k t+v+vth + a +sd + + kG+++ +
MMSYN1_0427 151 LwdevKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDL--KKDYTIVMVTHSLQQATRISDYTGYFLKGELVEFN 246
411115666677789********************************97665555545555..55689****************************** PP
TIGR01187 184 epeeiyeePanefvarfi 201
++++i+ +P+++ + ++i
MMSYN1_0427 247 KTKKIFTNPKDRRTENYI 264
*********998766665 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 112.6 0.0 5.9e-35 3.9e-33 457 662 .. 12 224 .. 1 242 [. 0.87
Alignments for each domain:
== domain 1 score: 112.6 bits; conditional E-value: 5.9e-35
TIGR03375 457 lsreklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglye.....pteGsvlldgvdi..rqidpadlrrnigyvp 547
++e lk +ie+k+ +f Y++ ++++L n++++ik + iG G+GK+tllk + +l + +G +++ + di + id ++lr ++g+v
MMSYN1_0427 12 PKKEPLKTAIEIKDFNFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIfdKDIDITKLRTEVGMVF 109
56788999*************************************************999882222235678999888886689************** PP
TIGR03375 548 qdvtLfyGtlrdNialgap..aaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekll 643
q+++ f ++ dN+++g + ++d+++l + + + + + ++ +LSgGQ+q + +aRa+ ++p+ill+DEPtsalD + k+
MMSYN1_0427 110 QKPNPFPISIYDNVVYGLRslGIKDKKILDQICEESLVKA--ALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVE 205
***************987744799***9987766554433..34456777889999****************************************** PP
TIGR03375 644 erLkelladkTlvlvtHrt 662
e + +l +d T+v+vtH
MMSYN1_0427 206 ELVLDLKKDYTIVMVTHSL 224
*****************75 PP
>> TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 111.6 0.0 1.4e-34 9.6e-33 23 240 .. 37 264 .. 18 267 .. 0.82
Alignments for each domain:
== domain 1 score: 111.6 bits; conditional E-value: 1.4e-34
TIGR03258 23 vlddlsleieaGellallGksGsGkttllravaGfvk.adG....Grllvadrdlth....lppykrnlallvqnyalfphlkveenvafGlrarkqs 111
l ++ +ei+ + + +G+sG+Gkttll+ + + dG G + + d+d+ + + ++++++q fp + +++nv +Glr+
MMSYN1_0427 37 SLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlIDGvkmsGVIKIFDKDIFDkdidITKLRTEVGMVFQKPNPFP-ISIYDNVVYGLRSLGIK 133
5778999*************************988652466677899*****9996522115677889************.79**********99888 PP
TIGR03258 112 kaliaerva.dalklvqlsdaaarl...pa.qlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdeal 204
+ +i ++++ ++l l d + + pa lsGGqqqr+ +ara++++p++ll+dep sald +v e + l++ + t+++vth ++a
MMSYN1_0427 134 DKKILDQICeESLVKAALWDEVKDIltsPAlGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK---DYTIVMVTHSLQQAT 228
77777666525676666766655432224427********************************8777777776677766...68************* PP
TIGR03258 205 vladkillmkeGslialGetralydapadrfvaeyl 240
++d + + +G+l+++ +t++++ +p dr + +y+
MMSYN1_0427 229 RISDYTGYFLKGELVEFNKTKKIFTNPKDRRTENYI 264
*****************************9988886 PP
>> TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.5 0.0 3.3e-34 2.1e-32 10 231 .. 32 264 .. 21 267 .. 0.83
Alignments for each domain:
== domain 1 score: 110.5 bits; conditional E-value: 3.3e-34
TIGR00968 10 fGdfqalddvdlevktGslvallGpsGsGkstllrviaGlek.....pdsGrilleGrdvtrvkvr....dreiGfvfqhyalfkhltvrdniafGle 98
G++q+l ++++e+k+ s+++++GpsG Gk+tll+ i l++ + sG i + +d+ ++ + e+G+vfq+ f+ +++ dn+ +Gl+
MMSYN1_0427 32 KGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIFDKDIDitklRTEVGMVFQKPNPFP-ISIYDNVVYGLR 128
599***********************************99874333357899***999997665432222679***********8.89********** PP
TIGR00968 99 irkkdkakikakv..eellelvqleklgdryps...qlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdq 191
++ +ki +++ e l++ ++++d s lsGGq+qr+ +ara+a++p++ll+dep +ald ++ + + l++ + t v+vth
MMSYN1_0427 129 SLGIKDKKILDQIceESLVKAALWDEVKDILTSpalGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK--DYTIVMVTHSL 224
9977777777666335677877777888765432237********************************9988888888877776..5799******* PP
TIGR00968 192 eealevadrivvlekGkieqvgsaeevydepatafvlefl 231
++a+ ++d + kG++ + + +++++ +p ++ +++
MMSYN1_0427 225 QQATRISDYTGYFLKGELVEFNKTKKIFTNPKDRRTENYI 264
*******************************987766665 PP
>> TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.0 0.0 4.1e-34 2.7e-32 438 645 .. 7 224 .. 1 252 [. 0.81
Alignments for each domain:
== domain 1 score: 110.0 bits; conditional E-value: 4.1e-34
TIGR03797 438 vdeekvdpgkLsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFek.....PesGsvlyDGqdl..ekldvqavRrq 528
++++k + + L+ aie++ +F Y+k ++ L +++++i++ +++G+SG+GK tll+ + + sG + +d+ +++d++++R
MMSYN1_0427 7 ITNTKPKKEPLKTAIEIKDFNFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIfdKDIDITKLRTE 104
5566777788*************************************************9765544311111568888766677756689******** PP
TIGR03797 529 lGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDik.amPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQ 624
+G+V+Q+ + ++ si++n++ g + l +++ + + + e +k a+ + +++ + +lSGGQ+QRl iAra++ kP+ill+DE TSALD +
MMSYN1_0427 105 VGMVFQKPNPFPISIYDNVVYGLRsLGIKDK-KILDQICEESLVKaALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIAT 201
*******************998886887764.44555555555551455678899****************************************999 PP
TIGR03797 625 aiVsesleklk..vtRiviAHRL 645
V e + lk t +++ H L
MMSYN1_0427 202 LKVEELVLDLKkdYTIVMVTHSL 224
99999888776335778888877 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.2 0.0 7.9e-34 5.2e-32 2 202 .. 21 229 .. 20 238 .. 0.85
Alignments for each domain:
== domain 1 score: 109.2 bits; conditional E-value: 7.9e-34
TIGR02673 2 ielekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaek.....psrGevevagedvarlrerelpllRrkigvvfqDfkllkd 93
ie+++ ++ y+ ++++ L +++++i++ +++ +G+sG Gkttllk + + +G ++++ +d+ + ++ ++++lR ++g+vfq + ++
MMSYN1_0427 21 IEIKDFNFFYNkGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIFD-KDIDITKLRTEVGMVFQKPNPFP- 116
6778888889856789********************************987751122256799********98.6789**************99887. PP
TIGR02673 94 rtvlenvalalevrgkkeeeiqkrv.eevlelvgledkak....alpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkr 186
++++nv l+ g k+++i ++ ee l + l d +k + lsgG qqR iaRai kP++ll DePt lD+ + ++ +l+ +l+k
MMSYN1_0427 117 ISIYDNVVYGLRSLGIKDKKILDQIcEESLVKAALWDEVKdiltSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK- 213
69*************9999997776366777777766655111155778*******************************************99976. PP
TIGR02673 187 Gttvivathdeelver 202
t++++th + + r
MMSYN1_0427 214 DYTIVMVTHSLQQATR 229
5899999**9876655 PP
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.0 0.0 9.2e-34 6.1e-32 331 560 .. 14 250 .. 2 256 .. 0.84
Alignments for each domain:
== domain 1 score: 109.0 bits; conditional E-value: 9.2e-34
TIGR02204 331 pakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfyd.....PqsGailldGvdl..reldpeelrerlalvpq 421
++++++ie+++ +f y + ++++l ++++++++ ++GPsG Gk+tll+ + r d sG i++ d+ +++d ++lr+++ +v q
MMSYN1_0427 14 KEPLKTAIEIKDFNFFYNKG-KTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIfdKDIDITKLRTEVGMVFQ 110
4578899**********765.599**********************************99833333457889998889933357789*********** PP
TIGR02204 422 dsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqal 519
+++ f s+ +n+ yG ++ + + +e + +l + + l ++ LsGGq+qr+ iarai + +iLL+de tsaLd + +v++ +
MMSYN1_0427 111 KPNPFPISIYDNVVYGLRSLGIKDKKILDQICEESLVKAALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELV 208
****************8877666655555566655566789999****************************************************** PP
TIGR02204 520 eelmkgrttlviahrLatvlk.adrivvldkGriveqGthae 560
l k+ t +++ h L ++ +d + kG++ve + ++
MMSYN1_0427 209 LDLKKDYTIVMVTHSLQQATRiSDYTGYFLKGELVEFNKTKK 250
**************9975544256666777888887666555 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 107.9 0.0 1.9e-33 1.2e-31 2 219 .. 22 251 .. 21 260 .. 0.88
Alignments for each domain:
== domain 1 score: 107.9 bits; conditional E-value: 1.9e-33
TIGR03410 2 evenlevaY..gesevlrdvslevekgevvavlGrngvGkttllkalvgllk.....vksGeielegeditklk.peervkaGiayvpqGreifpklt 91
e+++ + +Y g+++ l ++++e++++++++ +G g Gkttllk++ l + ++sG i++ ++di +++ ++ ++ ++ v q + fp ++
MMSYN1_0427 22 EIKDFNFFYnkGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIFDKDiDITKLRTEVGMVFQKPNPFP-IS 118
6888888884457899*******************************988762223357899*******97665267999**************9.8* PP
TIGR03410 92 veenlelglealkkkekkipeeiye.......lFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekd 182
+ +n+ gl++l k+kki ++i e l+ +k++l+ + LsGGqqq l iaRa++++Pk+ll+DePt + P ++e+ + +l+k d
MMSYN1_0427 119 IYDNVVYGLRSLGIKDKKILDQICEeslvkaaLWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK--D 214
*******************9999753333333777899999*************************************************99987..7 PP
TIGR03410 183 laillveqvldfaleladrylvlerGevvaegekeel 219
+i++v ++l+ a++++d+ + +Ge+v+ ++++++
MMSYN1_0427 215 YTIVMVTHSLQQATRISDYTGYFLKGELVEFNKTKKI 251
9***************************998887765 PP
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 106.3 0.0 5.5e-33 3.6e-31 4 227 .. 40 265 .. 38 268 .. 0.89
Alignments for each domain:
== domain 1 score: 106.3 bits; conditional E-value: 5.5e-33
TIGR02770 4 dvnlslkrgkvlalvGesGsGksltalailglldk.eltktsGeilldgkelaal....alrgreialilqnPrsafnPl.ltikeqlletlkalekl 95
++n+++k+ +++++G sG+Gk++ ++i l d + +k sG i + +k++ + + e+++++q+P P +i ++++ l++l+
MMSYN1_0427 40 NINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLiDGVKMSGVIKIFDKDIFDKdidiTKLRTEVGMVFQKPN----PFpISIYDNVVYGLRSLGIK 133
79***********************9999998874267899**********998867663445789*******4....443699************** PP
TIGR02770 96 skqakeliv.ealeavgL.eeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvae 191
k+ ++i e+l +++L +e++ +l++ + lsGG qR+ ia a+++++ +l+ DePt++lD + ++v +l+ +l++ + +i+++th l+ ++
MMSYN1_0427 134 DKKILDQICeESLVKAALwDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK--DYTIVMVTHSLQQATR 229
9888888762567777774789*************************************************999988865..689************* PP
TIGR02770 192 ladevavmekGkivergtvkelfqePkhettrkLls 227
+ d+ + kG++ve ++ k++f++Pk++ t + +s
MMSYN1_0427 230 ISDYTGYFLKGELVEFNKTKKIFTNPKDRRTENYIS 265
****************************99987765 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 104.0 0.0 2.4e-32 1.6e-30 4 187 .. 34 224 .. 30 227 .. 0.84
Alignments for each domain:
== domain 1 score: 104.0 bits; conditional E-value: 2.4e-32
TIGR01166 4 eaevlkglnlavergevlallGanGaGkstlllhlnGl...lr..PksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgpln 96
+++ l ++n+++++ + ++++G+ G+Gk+tll+ +n l + sG + + +++ + ++++lr++v++v+q p+ f ++ ++v +g++
MMSYN1_0427 34 KTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLndlIDgvKMSGVIKIFDKDIFDKDIDITKLRTEVGMVFQKPNP--FPISIYDNVVYGLRS 129
678899**************************98775411143223567777777777666679***************86..9999*********** PP
TIGR01166 97 lGlseaeverrv.realaav....disgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdv 187
lG++++++ ++ +e+l + +++++ p+ lsgG+++r+ ia a+a++p++ll+dePt+ ldp + ++ e++ l+++ t+v+ th +
MMSYN1_0427 130 LGIKDKKILDQIcEESLVKAalwdEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKD-YTIVMVTHSL 224
******986654277776651233567788889999**********************************************876.7999****76 PP
>> TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.7 0.8 2.8e-31 1.8e-29 465 690 .. 12 246 .. 1 255 [. 0.82
Alignments for each domain:
== domain 1 score: 100.7 bits; conditional E-value: 2.8e-31
TIGR01193 465 telenlngdievndvsysyGygs.evledislkikknekitlvGlsGsGkstlakllvkff.....qaesGeillngksl..kdidkhelrqlinylP 554
++e l++ ie++d ++ y g+ + l +i+++ik+++ +t +G sG Gk+tl k + ++ + sG i++ +k++ kdid+++lr + +
MMSYN1_0427 12 PKKEPLKTAIEIKDFNFFYNKGKtQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNdlidgVKMSGVIKIFDKDIfdKDIDITKLRTEVGMVF 109
567788999********9998863689****************************9877763333336899****999996679************** PP
TIGR01193 555 qePfifsGsilenlllgake.nvsqeei.kkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekki 650
q+P f si +n++ g + ++++++i ++++e + +k+ + + l++ a +sgGq+qrl++ara+ + k+l++de ts ld + k+
MMSYN1_0427 110 QKPNPFPISIYDNVVYGLRSlGIKDKKIlDQICEESLVKAALW---DEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKV 204
****************998735555555157777777777654...455666778899**************************************** PP
TIGR01193 651 venllklk.dktiifvahrlsvakk.sdkiivldeGkiieqG 690
e +l lk d ti++v+h l+ a + sd + +G+++e
MMSYN1_0427 205 EELVLDLKkDYTIVMVTHSLQQATRiSDYTGYFLKGELVEFN 246
99999996378*********9987724444456666666655 PP
>> TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.5 0.1 3.7e-31 2.4e-29 4 210 .. 33 250 .. 29 265 .. 0.84
Alignments for each domain:
== domain 1 score: 100.5 bits; conditional E-value: 3.7e-31
TIGR01188 4 gefkAvdgvnlkveegevfglLGPnGAGKtttikm...LttllkP..dsGtarvaGyDvvrepd...evRrsigvvpqkasvdedLtarenlellgel 93
g+++ + ++n++++e ++ ++GP G GKtt++k L l+ sG +++ D+ + ++R ++g+v+qk + ++ ++n++ +
MMSYN1_0427 33 GKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSinrLNDLIDGvkMSGVIKIFDKDIFDKDIditKLRTEVGMVFQKPNPFP-ISIYDNVVYGLRS 129
5889999************************9665122677787522689999999999965432559*************985.799******99** PP
TIGR01188 94 yglpkkea.eeraeellelvelkeaadk....kvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthylee 186
+g++ k++ ++ ee l +l++ + ++ +sgG+++rl +a+++ +P++l +DEPt+ LDp + ++ +l+ +lkk + ti++ th l++
MMSYN1_0427 130 LGIKDKKIlDQICEESLVKAALWDEVKDiltsPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK-DYTIVMVTHSLQQ 226
***9766515666888888888877665111155689*********************************************86.799********** PP
TIGR01188 187 adkladrvaiidkGkiiaedtpee 210
a +++d+ + kG+++ ++ +++
MMSYN1_0427 227 ATRISDYTGYFLKGELVEFNKTKK 250
*****************9988765 PP
>> TIGR00958 3a01208: antigen peptide transporter 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 99.0 0.0 8e-31 5.3e-29 471 702 .. 13 253 .. 4 258 .. 0.82
Alignments for each domain:
== domain 1 score: 99.0 bits; conditional E-value: 8e-31
TIGR00958 471 apknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYq.....PtgGqvllDgkpl..keydhkylhrkvalVg 561
+ + l+ +e +d +F Y ++ +++ l ++++ ++ ++++ +GPsG GK t +++l + +G + + +k++ k++d l+++v++V
MMSYN1_0427 13 KKEPLKTAIEIKDFNFFY-NKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIfdKDIDITKLRTEVGMVF 109
55678999********99.788999999*************************99999987622222467899999999966679999********** PP
TIGR00958 562 qEPvlfsgsvreNiaYGltkte..deevt.aaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....ev 652
q P f s+ +N+ YGl++ d+++ +++ ++ + + k++ t lsgGq+qr+ iARA+ kP +L++De tSALD +v
MMSYN1_0427 110 QKPNPFPISIYDNVVYGLRSLGikDKKILdQICEESLVKAALWDEVKDILTS---PALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPiatlKV 204
*******************987635555416778888888888888888776...4567********************************9777777 PP
TIGR00958 653 eqllqesksaksrtvlliahrLstveka.dkilvlkkgsvvelGthkqLme 702
e+l+ + +k+ t+++++h L+ + + d kg++ve + k++ +
MMSYN1_0427 205 EELVLDL--KKDYTIVMVTHSLQQATRIsDYTGYFLKGELVEFNKTKKIFT 253
7777665..5799*********99887514455667778888777776665 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 98.8 0.0 8.7e-31 5.7e-29 452 677 .. 17 250 .. 4 259 .. 0.88
Alignments for each domain:
== domain 1 score: 98.8 bits; conditional E-value: 8.7e-31
TIGR01846 452 lkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrly.....vPekGrvlvdgvdla..ladPawlrrqvgvvlqenvl 542
lk aie+++ +f y++ +++ l n++++ik+ + +GpsG+Gk+tl k + rl+ v G + + ++d+ +d + lr +vg+v+q+
MMSYN1_0427 17 LKTAIEIKDFNFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNdlidgVKMSGVIKIFDKDIFdkDIDITKLRTEVGMVFQKPNP 114
7889***************************************************8655556778999999999962257889*************** PP
TIGR01846 543 fsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic 640
f si dn+ + ++ + ++ +l + + ++ lsGGq+qr+ +ara+ +P+il++de tsald + + + + ++
MMSYN1_0427 115 FPISIYDNVVYGLRSLGIKDKKILDQICEESLVKAALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLK 212
*********998877776666667788877777788999999******************************************************** PP
TIGR01846 641 kgrtviiiahrls.tvraadrilvlekGkivesGkhee 677
k+ t+++++h l+ + r +d + kG++ve k ++
MMSYN1_0427 213 KDYTIVMVTHSLQqATRISDYTGYFLKGELVEFNKTKK 250
***********963667777777788888888766655 PP
>> TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 97.0 0.0 3e-30 2e-28 466 673 .. 9 225 .. 1 255 [. 0.81
Alignments for each domain:
== domain 1 score: 97.0 bits; conditional E-value: 3e-30
TIGR03796 466 aeseekekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlye.....pwsGeil.fD.gkpreeiprevlansla 556
+++ +ke L+ ++e+++ +f y++ +++ + ++++++k+ + ++G+sG+Gk t+ k + l + ++sG i fD ++ ++i + l++ +
MMSYN1_0427 9 NTKPKKEPLKTAIEIKDFNFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKiFDkDIFDKDIDITKLRTEVG 106
33444489**************************************************99999872222244566642552466799*********** PP
TIGR03796 557 lvdqdivlfegtvrdnlt..lwdetipeedlv.rAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetE 651
+v q+ f ++ dn+ l + i++++++ + +++ ++ ++ ++ + l+ + lsGGq+qRl iARa++ +P iL++DE tsaLD+ +
MMSYN1_0427 107 MVFQKPNPFPISIYDNVVygLRSLGIKDKKILdQICEESLVKAAL---WDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIAT 201
****************96336677788888652567777777655...56777889999**************************************9 PP
TIGR03796 652 kaidenlr..rRgctciivaHRLs 673
+++e + ++ t+++v+H L
MMSYN1_0427 202 LKVEELVLdlKKDYTIVMVTHSLQ 225
9999976433789********995 PP
>> TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 96.0 0.0 6.9e-30 4.5e-28 325 530 .. 14 225 .. 2 248 .. 0.87
Alignments for each domain:
== domain 1 score: 96.0 bits; conditional E-value: 6.9e-30
TIGR02203 325 lervrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFye.....pdsGeillDgvdl..adlkLasLRrqvalvsqd 415
+e + +e+++ +f y++ +++ l +i++++++ ++ ++G+sG Gk+tl++ + R + + sG i + ++d+ +d+ +++LR++v +v q+
MMSYN1_0427 14 KEPLKTAIEIKDFNFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIfdKDIDITKLRTEVGMVFQK 111
4447889**************************************************98733333457889998999856689999************ PP
TIGR02203 416 vvLFddtiaenvaYgel.eevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaa 512
F +i +nv Yg + ++++++ + + + l + +l + ++ + + + LsGGq qRl iaRa+ iL++De tsaLD + +v +
MMSYN1_0427 112 PNPFPISIYDNVVYGLRsLGIKDKKILDQICEESLVK--AALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEEL 207
***************8735788888877665544433..357788888899999******************************************** PP
TIGR02203 513 LerlmkgRttlviahRLs 530
+ l k+ t +++ h L
MMSYN1_0427 208 VLDLKKDYTIVMVTHSLQ 225
***************985 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 95.9 0.0 8e-30 5.3e-28 329 530 .] 16 224 .. 2 224 .. 0.83
Alignments for each domain:
== domain 1 score: 95.9 bits; conditional E-value: 8e-30
TIGR02868 329 asekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglld.....plkGevtldgvsv..aslsesevrrvvsvlaqda 418
+ k +e++d ++ y+++++ l ++++++++ + ++ +G+sG+GK+tLl+ + +l d +G + + + ++ ++++ +++r v ++ q++
MMSYN1_0427 16 P-LKTAIEIKDFNFFYNKGKTqSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIfdKDIDITKLRTEVGMVFQKP 112
2.36799**********99998**********************************988222222345666666666225678899************ PP
TIGR02868 419 HlFdttvreNlrlarpda..tdeellaaLervgLadwlra.LpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelled 513
F ++ +N+ + +d+ +l+ + + L ++a L d ++ l++ + lSGG++qRl +ARa+ + ++ll+DEPt LD+ + ++ e
MMSYN1_0427 113 NPFPISIYDNVVYGLRSLgiKDKKILDQICEESL---VKAaLWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEEL 207
************9988763466665555555555...44338899999************************************************** PP
TIGR02868 514 Llaaeegrtvvlvthrl 530
+l+ ++++t+v+vth+l
MMSYN1_0427 208 VLDLKKDYTIVMVTHSL 224
***************86 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 95.2 0.0 1.6e-29 1.1e-27 12 221 .. 37 253 .. 27 263 .. 0.82
Alignments for each domain:
== domain 1 score: 95.2 bits; conditional E-value: 1.6e-29
TIGR02142 12 feLdvdlelpgkgvtalFGrsGsGktslirliaGLtrpde.....geivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkrar 104
++++e++ k +t+ G sG+Gkt+l++ i L + + g i++ ++ ++d k i+++ + +vg+vFq+ + Fp +s+ +n++YGl++
MMSYN1_0427 37 SLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIDgvkmsGVIKIFDKDIFD--KDIDITKLRTEVGMVFQKPNPFP-ISIYDNVVYGLRSLG 131
45689999************************9999876501111456666666655..789********************.89**********998 PP
TIGR02142 105 aeerri....seekvielL...giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldev 195
++++i ee++++ ++ +l+ + LsGG +qR i+RA+ +P++LlmDeP +aLD ++ + l+++ +i ++v Hsl+
MMSYN1_0427 132 IKDKKIldqiCEESLVKAAlwdEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKDYTI--VMVTHSLQQA 227
8887651111567777643244689999****************************************999999999999998875..789******* PP
TIGR02142 196 arladrvvvledGrvkaagkleevla 221
+r++d + +G + + k +++ +
MMSYN1_0427 228 TRISDYTGYFLKGELVEFNKTKKIFT 253
****9887777777777777776665 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 91.2 0.2 2.1e-28 1.4e-26 10 198 .. 34 228 .. 26 233 .. 0.79
Alignments for each domain:
== domain 1 score: 91.2 bits; conditional E-value: 2.1e-28
TIGR03608 10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllek.....kdsgkvilegkekaklkskkaskllreklgylFqn...faLlenetveenl.e 98
+ + l +++++i++ ++++ +G sG+GK+tlL + +l++ k sg + +++k+ +++ + lr+++g +Fq f + ++v + l +
MMSYN1_0427 34 KTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKD--IFDKDIDITKLRTEVGMVFQKpnpFPISIYDNVVYGLrS 129
5567889****************************9998722222356788999998..566777778889********8333444334444444424 PP
TIGR03608 99 lalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpev 196
l++k kk+ + e+ ++++ +++ l lsgG++qR+ +ar++ +++++l DEPt++LD+ +v el+ +lk+ + ti++vtH+ +
MMSYN1_0427 130 LGIKDKKILDQICEESLVKAALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK-DYTIVMVTHSLQQ 226
677777777666666666666667778888899999*********************************************986.6899*****9876 PP
TIGR03608 197 ae 198
a
MMSYN1_0427 227 AT 228
55 PP
>> TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.9 0.1 1.1e-27 7.1e-26 13 230 .. 34 259 .. 21 268 .. 0.82
Alignments for each domain:
== domain 1 score: 88.9 bits; conditional E-value: 1.1e-27
TIGR04406 13 krkvvkdvslevksgeivGllGPnGaGkttsfymi...vGlvk..adaGkvllddeditklplh.erarlGigylpqeasifrkltveenlkavlelr 104
k + + ++++e+k+ i ++GP G Gktt + i l+ + +G +++ d+di ++ ++ ++ r+ +g + q++ f +++ +n+ l
MMSYN1_0427 34 KTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSInrlNDLIDgvKMSGVIKIFDKDIFDKDIDiTKLRTEVGMVFQKPNPF-PISIYDNVVYGLRSL 130
45667799**********************776661115566533679**************9835789999999*****99.59******9998877 PP
TIGR04406 105 edldkeereeklee.lleel...eiahlrekkaaslsGGerrrveiaralaaePkfilldePfagvdPiavsdikklikllkergiGvlitdhnvret 198
dk+ ++ ee l++ e++ + ++ a lsGG+++r+ iara+a++Pk++l+deP +++dPia ++++l+ lk+ +++ h +++
MMSYN1_0427 131 GIKDKKILDQICEEsLVKAAlwdEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKDY-TIVMVTHSLQQA 227
655555555555441443322336889999***************************************************9765.566666****** PP
TIGR04406 199 ldivdrayivseGkvlaeGsaeeivanekvre 230
i d + +G++++ ++++i +n+k r+
MMSYN1_0427 228 TRISDYTGYFLKGELVEFNKTKKIFTNPKDRR 259
*****999999****************99886 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 86.5 0.0 6.9e-27 4.5e-25 13 206 .. 37 241 .. 22 248 .. 0.79
Alignments for each domain:
== domain 1 score: 86.5 bits; conditional E-value: 6.9e-27
TIGR01277 13 lplefdlsveaGervailGesGaGkstllnliaGfl.....epasGeikvndkdh....trsapyerpvsmlfqennlfahltvrqni.....glGlk 96
++ ++++++ + + +G+sG Gk+tll+ i + +sG ik+ dkd + + + v m+fq+ n f+ +++ +n+ +lG+k
MMSYN1_0427 37 SLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNdlidgVKMSGVIKIFDKDIfdkdIDITKLRTEVGMVFQKPNPFP-ISIYDNVvyglrSLGIK 133
3456667777888899*************877665411122346899*****9972222456788999***********9.67777872322346666 PP
TIGR01277 97 pglklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaa 194
l+ + +e ++++a ++d+l lsGGq+qr+ +ar + + ill+dep saldp ++ lv l +k+ t+++vthsl++a++
MMSYN1_0427 134 DKKILDQICEESLVKAALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDL--KKDYTIVMVTHSLQQATR 229
66778999999*****************999******************999*************8777777777666..789*************** PP
TIGR01277 195 iasqvvvvedGk 206
i + + + +G+
MMSYN1_0427 230 ISDYTGYFLKGE 241
*99877666665 PP
>> TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.1 0.0 3.8e-26 2.5e-24 16 240 .. 27 253 .. 21 263 .. 0.83
Alignments for each domain:
== domain 1 score: 84.1 bits; conditional E-value: 3.8e-26
TIGR02769 16 gllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlek.....PakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvr 108
++ +k++++ l n++++++e +++G sG+Gk+tl + + l+ +G ++ +d+ d + ++r +v +vfq + s+
MMSYN1_0427 27 NFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIFDKDI-DITKLRTEVGMVFQKPNP-F--PISIY 120
5788999*********************************999998722121345667777777777655.56679*********8532.2..46888 PP
TIGR02769 109 eiigePlrhltsldeserkariaellelvelrsevldkl..Pr.qlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGla 203
+ lr l d+ + +e l + l +ev d l P+ lsGGq qr++iara+a++Pk++++de s ld + +++ el+ +lk++ +
MMSYN1_0427 121 DNVVYGLRSLGIKDKKILDQICEESLVKAALWDEVKDILtsPAlGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKDY--T 216
888899999988888777777788888888888776654214337**********************************************9987..5 PP
TIGR02769 204 ylfithdlrlvqkfaqrvlvldeGqiveeikvaells 240
++++th l+ + ++++ + +G++ve k+ + ++
MMSYN1_0427 217 IVMVTHSLQQATRISDYTGYFLKGELVEFNKTKKIFT 253
689*************************988877665 PP
>> TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.5 0.0 1.1e-25 7e-24 8 209 .. 27 231 .. 20 242 .. 0.81
Alignments for each domain:
== domain 1 score: 82.5 bits; conditional E-value: 1.1e-25
TIGR02211 8 tksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldk.....ptsGevllkGkelsklssneraklrnkklGfiyqfhhlladfta 100
+ y++ +++ l ++++ei++ +++ +G sG Gk+tll + l++ sG +++ k++ + +++klr ++G+++q ++ ++
MMSYN1_0427 27 NFFYNK--GKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIFD-KDIDITKLRT-EVGMVFQKPNPFP-ISI 119
445554..4678899***************************999998722112345666666666654.4678999*96.79*****998876.89* PP
TIGR02211 101 lenvamPll.iskkskkeakerakellekvglekrin....kkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkeknt 193
+nv+ l ++ k+kk +++++e l k l + ++ + lsGG++qr iara+ kPk++l dePt+ ld ++ k+ el+l+l+k++
MMSYN1_0427 120 YDNVVYGLRsLGIKDKKILDQICEESLVKAALWDEVKdiltSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKDYT- 216
****998743788888889999999999998876665111044558**********************************************98875. PP
TIGR02211 194 allvvthdlelakkld 209
+++vth l+ a +++
MMSYN1_0427 217 -IVMVTHSLQQATRIS 231
.6899***99999886 PP
>> TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.1 0.0 1.5e-25 9.7e-24 2 196 .. 21 227 .. 20 261 .. 0.82
Alignments for each domain:
== domain 1 score: 82.1 bits; conditional E-value: 1.5e-25
TIGR03864 2 leveglsfay..gkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeak.....egeikvaGldlrrapkeala...rlGvvfqqstlDldl 89
+e+++ +f y gk + l ++++++++ +++ +Gp G Gk+tL++ + rL + +g ik++ +d+ ++ ++ + ++G+vfq++ +
MMSYN1_0427 21 IEIKDFNFFYnkGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIdgvkmSGVIKIFDKDIFDKDIDITKlrtEVGMVFQKPN-PFPI 117
77888887775578999**********************************98765666699********98887766432238******997.689* PP
TIGR03864 90 sveqnlryhaaLhGlsraeaeeri.eealarlglaeraeek....vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvree 182
s+ n+ y G+ ++ ++i ee l + l + ++ + L+GG+++r+ iara+ +Pk+LL+De+t LD+ + ++ e v +l +
MMSYN1_0427 118 SIYDNVVYGLRSLGIKDKKILDQIcEESLVKAALWDEVKDIltspALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK-- 213
**********99*******99998356788888887776651111667*******************************************99985.. PP
TIGR03864 183 glsvLWathlvdev 196
+ +++ th ++
MMSYN1_0427 214 DYTIVMVTHSLQQA 227
55666778877655 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 80.0 0.0 7.1e-25 4.7e-23 3 182 .. 45 233 .. 43 258 .. 0.74
Alignments for each domain:
== domain 1 score: 80.0 bits; conditional E-value: 7.1e-25
TIGR03771 3 vdkGellgllGpnGaGkttllrailgl...ik..vakGsvkvagkss.......rkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkk 88
+++ + +++Gp G Gkttll++i l i + G +k+ k +k r+e+G v q+ + fpi++++ v+ G + +G+ +
MMSYN1_0427 45 IKEKSITTFIGPSGCGKTTLLKSINRLndlIDgvKMSGVIKIFDKDIfdkdidiTKLRTEVGMVFQKPN---PFPISIYDNVVYGL-RSLGIKDKKIL 138
556677889**************9765221432246789999776531111112566788899988865...7***********95.67886555444 PP
TIGR03771 89 adfaa....vadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdr 182
d + v++al +++++ p lsGGq+qr+ +ara+a+kp++ll+dep + ld ++ ++ el+ +l + + +i+m+th l +a ++d
MMSYN1_0427 139 -DQICeeslVKAALWD-EVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK-DYTIVMVTHSLQQATRISDY 233
.444301114455543.455666677778**********************************************76.579***********998875 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.8 0.0 1.2e-24 8e-23 330 552 .. 16 247 .. 5 260 .. 0.82
Alignments for each domain:
== domain 1 score: 78.8 bits; conditional E-value: 1.2e-24
TIGR01192 330 nvkgavefrdisfefans.sqgvrdvsfeakagqtvaivgptgagkttlinllqrvyd.....pksgqilidgvdi..atvtreslrksiatvfqdag 419
+k a+e++d +f + +q ++++ +e+k + +gp+g gkttl+ ++r+ d sg i i di + ++ lr + vfq
MMSYN1_0427 16 PLKTAIEIKDFNFFYNKGkTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIfdKDIDITKLRTEVGMVFQKPN 113
56889*******988765269****************************999998887333333578899988888445799999************* PP
TIGR01192 420 llnrsirenirlgred..atdeevvea.akaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdai 514
+ si +n+ g + d+++++ ++ + + + + +k+ +t lsgg++qrl iarai il++de tsald + +v + +
MMSYN1_0427 114 PFPISIYDNVVYGLRSlgIKDKKILDQiCEESLVKAALWDEVKDILTS---PALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELV 208
**********99966511456666654144455555666777776665...5677******************************************* PP
TIGR01192 515 dalrknrttfiiahrls.tvreadlvlfldqgrliekgs 552
l+k+ t +++h l + r +d ++ +g l+e
MMSYN1_0427 209 LDLKKDYTIVMVTHSLQqATRISDYTGYFLKGELVEFNK 247
***************972578899999999999998655 PP
>> TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.8 0.9 1.6e-24 1.1e-22 11 207 .. 33 247 .. 21 254 .. 0.78
Alignments for each domain:
== domain 1 score: 78.8 bits; conditional E-value: 1.6e-24
TIGR03740 11 kkqavvnnvslkvkknsvygllGpnGaGkstllklltGl...lr..ktsGeilldgrewtrkdl......kkiGsliesPalyenltarenlkvrtll 97
+k + + n+++++k++s+ +++Gp G+Gk+tllk + l + k sG i++ ++++ kd+ +++G + ++P + ++ ++n+
MMSYN1_0427 33 GKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLndlIDgvKMSGVIKIFDKDIFDKDIditklrTEVGMVFQKPNPF-PISIYDNVVYGLRS 129
45677889**************************9876622132447899998877777666652222234899999999988.5899****999999 PP
TIGR03740 98 lglpesri.....eevlkivdlentekk....kakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilse 186
lg+++++i ee l + l ++ k a +s G +qrl ia a+ kPk+l++dePt ldP+ ++ el+ ++++ t+++ +h l +
MMSYN1_0427 130 LGIKDKKIldqicEESLVKAALWDEVKDiltsPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKD-YTIVMVTHSLQQ 226
999999984333334455555655555411115566777889***************************************9865.7899999***** PP
TIGR03740 187 velladhiGiiseGklkyekk 207
++d+ G +G+l +k
MMSYN1_0427 227 ATRISDYTGYFLKGELVEFNK 247
**************9865444 PP
>> TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 76.9 0.2 6e-24 4e-22 3 196 .. 40 245 .. 38 264 .. 0.75
Alignments for each domain:
== domain 1 score: 76.9 bits; conditional E-value: 6e-24
TIGR01184 3 dvdleikkgefislighsgcgkstllnliaglekpt.....sgavilegk.......eitepgpdrmvvfqnysllpwltvrenialavdavlrdlsk 88
++++eik+ + ++ig sgcgk+tll i l+ sg +++ k +it+ + +vfq +p ++++n++ + + + +k
MMSYN1_0427 40 NINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIdgvkmSGVIKIFDKdifdkdiDITKLRTEVGMVFQKPNPFP-ISIYDNVVYGLRSLGIK-DK 135
89************************999988875411111455555555111111145666677779********9.589*****999887655.45 PP
TIGR01184 89 serreiveehielvglreaad....krpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeallls 182
+ ++i ee + +l + + lsgg +qr+ iara++++pk+ll+dep ald ++ +++e +l++ ++ t++mvth +++a +s
MMSYN1_0427 136 KILDQICEESLVKAALWDEVKdiltSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKD--YTIVMVTHSLQQATRIS 231
567789999887777654433011145568**************************************99999998765..79**************9 PP
TIGR01184 183 drvvmltngpaaki 196
d + +g +
MMSYN1_0427 232 DYTGYFLKGELVEF 245
98777766665555 PP
>> TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 76.6 0.3 8e-24 5.3e-22 4 219 .. 22 251 .. 19 263 .. 0.81
Alignments for each domain:
== domain 1 score: 76.6 bits; conditional E-value: 8e-24
TIGR03522 4 evsdlskly..gkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgy...l..kadsGsvavagedvlknslev...rkniGylP.ehnPlyldl 90
e++d y gk ++l ++ +e+++ +i+ f+GP G Gk+tl+k + + sG +++ ++d+ ++ +++ r +G + + nP+ + +
MMSYN1_0427 22 EIKDFNFFYnkGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLndlIdgVKMSGVIKIFDKDIFDKDIDItklRTEVGMVFqKPNPFPISI 119
5566665552256778999**************************997652213223579***********998876222668998751569*99999 PP
TIGR03522 91 yvreylefsaalyklkgrklkkrv.eelielvGlkaeqhkkiga....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdk 183
y + + ++k++k+ +++ ee + ++ l e ++ ls G +qr +a+a+ +Pk+l++dePt+ ldP +++ e++ ++ kd
MMSYN1_0427 120 YDNVV--YGLRSLGIKDKKILDQIcEESLVKAALWDEVKDILTSpalgLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKDY 215
96654..444556888877665553889999***999988776444559************************************************* PP
TIGR03522 184 tvilsthimqevealcdrviiinkGkivadkkleel 219
t+++ th +q+ + d kG++v +k +++
MMSYN1_0427 216 TIVMVTHSLQQATRISDYTGYFLKGELVEFNKTKKI 251
****************99999999999988887776 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 73.0 0.0 7.8e-23 5.1e-21 17 223 .. 38 250 .. 27 259 .. 0.74
Alignments for each domain:
== domain 1 score: 73.0 bits; conditional E-value: 7.8e-23
TIGR03873 17 vddvdvtaPaGaltgllGPnGsGkstllrllaGllap.....daGevdlagadl..kalsrrararrvalveqdsdaevplsvrdvvalGriPhrslf 107
+ +++++ + ++t+ +GP G+Gk+tll+ + l G +++ +d+ k + + ++v +v q+ + p+s+ d v+ G rsl
MMSYN1_0427 38 LFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLidgvkMSGVIKIFDKDIfdKDIDITKLRTEVGMVFQK-PNPFPISIYDNVVYGL---RSLG 131
556778888899****************9877665540001134566666666522334444445678888876.6789*********994...5555 PP
TIGR03873 108 aadsdedaevvdralarv....elssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaa 201
d + +++ ++ l ++ e++++ + lsGG++qr +ara+a +Pk+ll+dePt ld a l++ +lv +l ++ t+v+ h l+ a+
MMSYN1_0427 132 IKDKKILDQICEESLVKAalwdEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDL-KKDYTIVMVTHSLQQAT 228
5555555555555554441111566777777789**********************************************.89999************ PP
TIGR03873 202 svcdhvvvldgGrvvaaGppae 223
+++d + +G +v ++++
MMSYN1_0427 229 RISDYTGYFLKGELVEFNKTKK 250
***9887777777766555555 PP
>> TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.6 0.1 8.8e-23 5.8e-21 284 518 .. 22 254 .. 4 264 .. 0.81
Alignments for each domain:
== domain 1 score: 72.6 bits; conditional E-value: 8.8e-23
TIGR03269 284 dvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsG...evevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyp 378
+++ + ++G +++ n+++e+kek i +G sG Gkttl k + + + +G ++++ d+ d+ +k + + + + +G+++q+ + +p
MMSYN1_0427 22 EIKDFNFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIDGvkmSGVIKIFDK--DIFDKDI-DITKLRTEVGMVFQKPNPFP 116
5555666678999999****************************998876666555110455666665..6666664.45567788***********9 PP
TIGR03269 379 hrtvlenlt...eaiglelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilka 473
++ +n+ ++g++ + l + +ka+ +de k+il + ls G++ r+ +a+ + +p+i+++dept ++dpi+ kv+e +l+
MMSYN1_0427 117 I-SIYDNVVyglRSLGIKDKKILDQICEESLVKAALWDE--VKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDL 211
6.6889987222455565555566665555666666654..789*****************************************************9 PP
TIGR03269 474 reeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeivee 518
+++ t v+v+h ++ + + d ++ +G +v+ ++++i ++
MMSYN1_0427 212 KKD--YTIVMVTHSLQQATRISDYTGYFLKGELVEFNKTKKIFTN 254
986..69*********************************99875 PP
>> TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 70.8 0.0 3e-22 2e-20 314 541 .. 18 252 .. 3 254 .. 0.82
Alignments for each domain:
== domain 1 score: 70.8 bits; conditional E-value: 3e-22
TIGR01842 314 egelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvw.....lpasGsvrlDgadl..kqwdretlGksiGYlPqdveLf 404
+ +e+++ ++ ++k++ l +i++++k+ ++ + iGpsg Gk++L + + ++sG +++ d+ k d +l ++G + q+ + f
MMSYN1_0427 18 KTAIEIKDFNFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNdlidgVKMSGVIKIFDKDIfdKDIDITKLRTEVGMVFQKPNPF 115
467888999999999**********************************98765411122467899*9988888555678899*************** PP
TIGR01842 405 eGtvaeniaRfee..nadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkel 500
+ ++ +n+ + ++++k+++ ++ + + + l + +++ +LsgGq+qR+ +aRa+ +Pk++++DeP + LD + + + +l
MMSYN1_0427 116 PISIYDNVVYGLRslGIKDKKILD--QICEESLVKAALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDL 211
*******98533311367788876..566666666788899999999999************************************************ PP
TIGR01842 501 karkitvvvithr.psllelvdkilvlkdGalkafGereevl 541
k+ t+v++th +++++ d+ + +G+l +f + +++
MMSYN1_0427 212 KKD-YTIVMVTHSlQQATRISDYTGYFLKGELVEFNKTKKIF 252
976.56667777615677788999899999999998888775 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.7 0.0 1e-21 6.6e-20 16 233 .. 36 255 .. 20 265 .. 0.81
Alignments for each domain:
== domain 1 score: 69.7 bits; conditional E-value: 1e-21
TIGR03411 16 kalndlslsveegelrviiGpnGaGkttll.......DvitGktrpdeGsvlfkgkdltklk.eaeiarlGigRkfqkpsvfeeltvlenlelalkad 105
++l +++++++e+++ + iGp G Gkttll D+i G +G +++ +kd+ ++ + + r+ +g fqkp+ f ++ +n+ l++
MMSYN1_0427 36 QSLFNINMEIKEKSITTFIGPSGCGKTTLLksinrlnDLIDGV--KMSGVIKIFDKDIFDKDiDITKLRTEVGMVFQKPNPFP-ISIYDNVVYGLRSL 130
567899***********************93333333444443..367999999**998776245667899***********7.79999998887765 PP
TIGR03411 106 ksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDme 203
+ + l++ +e++ +++ ++++ ++ a Ls Gq+q+L i+ ++ +pk+ll+DeP++ + t k+ el+ +l+k+ ++v+v h ++
MMSYN1_0427 131 GIKDKKI---LDQICEESLVKAALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKDYTIVMVTHSLQ 225
4444444...344444555555666678899999**************************************************************** PP
TIGR03411 204 fvrelaekvtvlheGkvlaeGsldevqade 233
++++ + +G+++ + +++ +++
MMSYN1_0427 226 QATRISDYTGYFLKGELVEFNKTKKIFTNP 255
*****9999999999988777777776665 PP
>> TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.7 0.0 2.8e-20 1.9e-18 9 208 .. 24 223 .. 17 234 .. 0.77
Alignments for each domain:
== domain 1 score: 64.7 bits; conditional E-value: 2.8e-20
TIGR02324 9 ktfilhqqgGvklpvlkevsleveaGelvalsGksGaGkstllkslya.nYlpesgrilvrhegeivdl.vkaserevlevRrktigyvsqfLrviPR 104
k f ++G k ++l ++++e+++ +++++G+sG Gk tllks+ + n l+++ ++ +i d + ++ ++ ++R +++g v q P
MMSYN1_0427 24 KDFNFFYNKG-KTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRlNDLIDGVKMSG--VIKIFDKdIFDKDIDITKLR-TEVGMVFQKPNPFP- 116
6777777776.568899*****************************98466777554432..22333321234677889999.9*******999999. PP
TIGR02324 105 vsalevvaepllelGvereearak.akellarlniperLWsl...aPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakar 198
+s + v l++lG+++++ + +e l + + + + + + sGG +qR+ iara+ ++ iLL+dePt++Ld v el+ ++k++
MMSYN1_0427 117 ISIYDNVVYGLRSLGIKDKKILDQiCEESLVKAALWDEVKDIltsPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKD 214
899999999*******9987755416777877766555433222144589****************88899**********999999*****999976 PP
TIGR02324 199 gaaligifhd 208
+++ + h
MMSYN1_0427 215 -YTIVMVTHS 223
.567777775 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 57.4 0.3 3.6e-18 2.4e-16 7 224 .. 3 222 .. 1 228 [. 0.82
Alignments for each domain:
== domain 1 score: 57.4 bits; conditional E-value: 3.6e-18
TIGR00955 7 nlsvvtrvaqdge.kkllvkrleealarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrse..kglkvsgdvlln.....Gekveake 96
n++++t+++ ++e k+ ++ + + +k++ + l n+ ++k+ + +G+SG GKtTLl+ + + g+k+sg + + + ++ ++
MMSYN1_0427 3 NEQLITNTKPKKEpLKTAIEIKDFNFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDliDGVKMSGVIKIFdkdifDKDIDITK 100
5666777666777788888888888999999999999****************************997764338999999876641111156788899 PP
TIGR00955 97 mraisayvqqddlfiptltvrehLmf.sahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEP 193
+r + v q+ +p +++++++++ l +k+ kk ++ ee l + L + + + +p glSgG+++Rl +a + +P++L++DEP
MMSYN1_0427 101 LRTEVGMVFQKPNPFP-ISIYDNVVYgLRSLGIKD---KKILDQICEESLVKAALWDEVKDILTSPAL--GLSGGQQQRLCIARAIAMKPKILLMDEP 192
999*******998888.577777766145566766...788889999999999999988888888886..**************************** PP
TIGR00955 194 TsGLDsfsaasvvkvLkklaqkgktviltiH 224
Ts LD + +v +++ +l + ++v ++ H
MMSYN1_0427 193 TSALDPIATLKVEELVLDLKKDYTIV-MVTH 222
************99999997766555.4444 PP
>> TIGR01257 rim_protein: rim ABC transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.9 0.0 2.7e-17 1.8e-15 945 1136 .. 37 240 .. 15 252 .. 0.75
Alignments for each domain:
== domain 1 score: 52.9 bits; conditional E-value: 2.7e-17
TIGR01257 945 avdrlnitfyenqitaflghngagktttlsi...ltgllp..ptsgtvlvggkdi.etnlda..vrqslgmcpqhnilfhhltvaehilfyaq.lk 1031
++ +n+ + e+ it+f+g g+gktt l l l+ sg + + kdi + ++d+ +r +gm+ q+ f +++ + +++ + l
MMSYN1_0427 37 SLFNINMEIKEKSITTFIGPSGCGKTTLLKSinrLNDLIDgvKMSGVIKIFDKDIfDKDIDItkLRTEVGMVFQKPNPFP-ISIYDNVVYGLRsLG 131
556789999******************9966122455554225799999*****9644555422899*******998886.566666666544143 PP
TIGR01257 1032 grsweea.qlemeamledtglhhk....rneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmde 1122
+ ++ q+ e+ l + l a lsgg q++l +a a+ k++++depts +dp + + +l+l + ti+m th +++
MMSYN1_0427 132 IKDKKILdQICEES-LVKAALWDEvkdiLTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKKDYTIVMVTHSLQQ 226
34444331443344.44444443300114567899************************************************************* PP
TIGR01257 1123 adllgdriaiisqg 1136
a + d +g
MMSYN1_0427 227 ATRISDYTGYFLKG 240
*9998877666655 PP
>> TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 54.4 0.0 4.3e-17 2.9e-15 18 227 .. 38 256 .. 18 266 .. 0.70
Alignments for each domain:
== domain 1 score: 54.4 bits; conditional E-value: 4.3e-17
TIGR02323 18 gcrvsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavga 114
+++++ + + + +G sG Gk+tllk++ l v+ + + + + + lrte G+v q+p+ + +++ g r l +
MMSYN1_0427 38 LFNINMeIKEKSITTFIGPSGCGKTTLLKSINR-LNDLIDGVKMSGVIKIFDKDIFDKDIDITKLRTEVGMVFQKPNPFPISIYDNVVYGLRSLGIKD 134
345888888899999****************76.7776666777666664444444444455569************987777666666666665544 PP
TIGR02323 115 rh.yGkiraaakwlekv...eidaarikpa.afsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrel..glaviivth.lavarl 203
++ +i +++ ++ e++ + pa +sGG qqrl iar++ +p++++m ept l + + l + +lv +l + ++++vth l a
MMSYN1_0427 135 KKiLDQICEES-LVKAAlwdEVKDILTSPAlGLSGGQQQRLCIARAIAMKPKILLMdEPTSALDPIAT--LKVEELVLDLkkDYTIVMVTHsLQQATR 229
33133333322.222211113333334776369******************************87754..5667777776225789******999999 PP
TIGR02323 204 laqrllvmkqGrvvesGlt.rvl..pk 227
+++ + + +G++ve t +++ pk
MMSYN1_0427 230 ISDYTGYFLKGELVEFNKTkKIFtnPK 256
9999999999*****999945544454 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 53.8 0.0 5.2e-17 3.4e-15 25 205 .. 43 234 .. 19 252 .. 0.77
Alignments for each domain:
== domain 1 score: 53.8 bits; conditional E-value: 5.2e-17
TIGR01288 25 ftiaagecfgllgpngagkstiarlvlglis.....pdegkitvlgepvpar...arlarakigvvpqfdnldreftvrenllvfg.ryfglstreie 113
+ i + ++gp g+gk+t+ + + l g i ++++++ + + r+++g+v q n +++ +n+ v+g r +g++ ++i
MMSYN1_0427 43 MEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvKMSGVIKIFDKDIFDKdidITKLRTEVGMVFQKPNP-FPISIYDNV-VYGlRSLGIKDKKIL 138
556666677899********9887765543311111456899999998765532256678899999887664.456778886.566599****99997 PP
TIGR01288 114 evip..sllefarleskadvrva...dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrl 205
+ i sl++ a + d+ + lsgg ++rl +ara+ p++l++dept+ ldp a l e l l + ti++ th +++a r+ d
MMSYN1_0427 139 DQICeeSLVKAALWDEVKDILTSpalGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIAT-LKVEELVLDLKKDYTIVMVTHSLQQATRISDYT 234
7764337888888777777654422279********************************997.66678888899******************9976 PP
>> TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.6 0.0 1.5e-15 9.8e-14 12 223 .. 33 246 .. 22 256 .. 0.83
Alignments for each domain:
== domain 1 score: 48.6 bits; conditional E-value: 1.5e-15
TIGR02633 12 ggvkaldnidlklraGeivslcGenGaGkstlmkvlsgv...yphGtydGeilfegeelkassirdte.rkGiviihqeltlvkelsvleniflGnei 105
g+ ++l ni+++++ i ++ G G+Gk+tl+k + + + +G i ++++ ++i t+ r + ++ q+ + +s+ +n+ G
MMSYN1_0427 33 GKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLndlIDGVKMSGVIKIFDKDIFDKDIDITKlRTEVGMVFQKPNPFP-ISIYDNVVYGL-- 127
6678899***************************87655110556689*****999********99984667889999988765.9*******995.. PP
TIGR02633 106 tlkGglmdydamvlrakellrelkl.dasnv..trpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishk 200
G + d++ + + ++e l + l d++++ t p l +Gqqq + ia+a+ + ++l++dep+++l t + +++ dlk+ + + v ++h
MMSYN1_0427 128 RSLG-IKDKKILDQICEESLVKAALwDEVKDilTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK-DYTIVMVTHS 223
4455.8889999999998777666625444433678888999*******************************************96.678999**** PP
TIGR02633 201 leevkavsdtisvirdGqhvatk 223
l++ +sd G+ v +
MMSYN1_0427 224 LQQATRISDYTGYFLKGELVEFN 246
*********98887777776655 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.9 0.0 0.00023 0.015 7 55 .. 29 77 .. 24 98 .. 0.85
2 ! 34.7 0.1 5e-11 3.3e-09 116 187 .. 154 224 .. 127 232 .. 0.80
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 0.00023
TIGR01189 7 aveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesG 55
+++g+++ l ++++e++ + Gp G GKttLL+ + L +G
MMSYN1_0427 29 FYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIDG 77
577889999999**************************99988776655 PP
== domain 2 score: 34.7 bits; conditional E-value: 5e-11
TIGR01189 116 gLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
+++++ p+ Ls Gq++Rl +ar + k ++ ++DEPt alD ++ +++el+ + l+++ ++++ th
MMSYN1_0427 154 EVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLD-LKKDYTIVMVTHSL 224
446677788999***********************************9999988875.77888888888864 PP
>> TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.4 0.1 1.9e-05 0.0013 323 377 .. 21 77 .. 4 102 .. 0.75
2 ! 31.3 0.0 2.8e-10 1.9e-08 161 255 .. 165 261 .. 147 265 .. 0.85
Alignments for each domain:
== domain 1 score: 15.4 bits; conditional E-value: 1.9e-05
TIGR03719 323 ievenlskafgd..klliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsG 377
ie+++ + +++ + ++++++ + +i iGp G+Gk+tl+k i ++ +G
MMSYN1_0427 21 IEIKDFNFFYNKgkTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIDG 77
5666655555431134456899************************99887765555 PP
== domain 2 score: 31.3 bits; conditional E-value: 2.8e-10
TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeyk..GtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrle 255
lsGG+++r+ ++r + kP +ll+dePt ld + +e+ + + k t+v+vth ++++ + +Ge + ++ + + k++r e
MMSYN1_0427 165 GLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKkdYTIVMVTHSLQQATRISDYTGYFLKGELVEFNKTKKIFTNPKDRRTE 261
59*******************************9999999988877652269******998888888888888888888888877777777777765 PP
>> TIGR01978 sufC: FeS assembly ATPase SufC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.9 0.2 8.1e-15 5.3e-13 12 223 .. 34 242 .. 21 251 .. 0.75
Alignments for each domain:
== domain 1 score: 46.9 bits; conditional E-value: 8.1e-15
TIGR01978 12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekye...vtsGeiklkgqdlleleve.eraraGlflafqapeeipGvsnkeflrsalnav 105
+ + L ++n+e+k+ + +Gp G Gk tL k + ++ +sG ik+ ++d+ + +++ + r+ + + fq+p+ p +s+ + + l +
MMSYN1_0427 34 KTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIdgvKMSGVIKIFDKDIFDKDIDiTKLRTEVGMVFQKPNPFP-ISIYDNVVYGLRSL 130
4677899***************************99877653221479***********999984466888889999999999.55555555555555 PP
TIGR01978 106 rkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithy 203
++++ ld+ + l +++ e++ l++ G sGG ++r i + ++Pk+ ++De s lD a v e v +l++ + +++++th
MMSYN1_0427 131 G-IKDKKILDQICE-ESLVKAALWDEVKDILTS--PALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIATLKVEELVLDLKK-DYTIVMVTHS 223
5.456665555544.444443334444444444..456*********************************8888889999999986.67899****9 PP
TIGR01978 204 erllelikPdvvhvlldGri 223
+ i+ d+ +l+G++
MMSYN1_0427 224 LQQATRIS-DYTGYFLKGEL 242
88777775.55555555555 PP
>> TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.9 0.1 5.4e-15 3.6e-13 1203 1412 .. 7 224 .. 1 252 [. 0.81
Alignments for each domain:
== domain 1 score: 45.9 bits; conditional E-value: 5.4e-15
TIGR01271 1203 ienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls......tegeiqi..dgvswnsvtlqkw 1290
i n++ kk p + +++kd+ y ++ l ++ + ++ ++g +g+gk+tll ++ rl + g i+i + + + + k
MMSYN1_0427 7 ITNTKPKK-EPLKTAIEIKDFNFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDlidgvkMSGVIKIfdKDIFDKDIDITKL 101
55555444.48888999**********9999**********************************97611111144555553223455689***** PP
TIGR01271 1291 rkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevglksvie.qfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafld 1385
r g++ qk + ++ n+ + + k+ +++ s+++ + d ++ +l ls g +q +c+ar+i k kill+dep++ ld
MMSYN1_0427 102 RTEVGMVFQKPNPFPISIYDNVVYGLRSLGIKDKKILDQICEESLVKaALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALD 197
***********999999999987766666666678888888888876257899******************************************* PP
TIGR01271 1386 pvtlqiirktlkqafsnctvilsehrv 1412
p++ + + + + t+++ h +
MMSYN1_0427 198 PIATLKVEELVLDLKKDYTIVMVTHSL 224
**7766666666666777777777766 PP
>> TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.9 0.0 2e-14 1.3e-12 1274 1502 .. 10 247 .. 3 253 .. 0.70
Alignments for each domain:
== domain 1 score: 43.9 bits; conditional E-value: 2e-14
TIGR00957 1274 appsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaeg.....eiiidglni..akiglhdlrfkl 1362
+ p+ p + +e++++ + y ++ l ++n++i+ +g +g+gk++l ++ r+n+ +g i+i +i +i + +lr+++
MMSYN1_0427 10 TKPKKEPLKTAIEIKDFNFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIDGvkmsgVIKIFDKDIfdKDIDITKLRTEV 105
345667888889999999999999999999999999988888899999999999999999988876651111145554434422568888889999 PP
TIGR00957 1363 tiipqdpvlfsgslrmnld.pfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletd 1457
++ q p f s+ n+ + + ++ + +++ +al d+++ + ls gq+q +c+ara+ k kil++de t+a+d +
MMSYN1_0427 106 GMVFQKPNPFPISIYDNVVyGLRSLGIKDKKILDQICEESLVKAALWDEVKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPIAT 201
999999888888888776413444444444333334444444467888888888888888999999999999999999999999999999987777 PP
TIGR00957 1458 nliqstirtqfedctvltiahrln...timdytrvlvldkgevaefda 1502
++ + +d t++ ++h l+ i dyt ++ kge+ ef+
MMSYN1_0427 202 LKVEELVLDLKKDYTIVMVTHSLQqatRISDYTGYFL--KGELVEFNK 247
7777777777788888888888752224788887654..777777765 PP
>> TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.7 0.0 1.9e-13 1.2e-11 471 648 .. 40 236 .. 31 241 .. 0.84
Alignments for each domain:
== domain 1 score: 41.7 bits; conditional E-value: 1.9e-13
TIGR00954 471 eLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg..................glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkergl 550
++++e+k+ + iGP GcGK l + + l ++ ++++ v q+P ++ d ++Y +s +k++ +
MMSYN1_0427 40 NINMEIKEKSITTFIGPSGCGKTTLLKSINRLNDLIDgvkmsgvikifdkdifdkDIDITKLRTEVGMVFQKPNPFPISIYDNVVYGLRSLGIKDKKI 137
57899999999999*******************9999999********9999887444555667788899***99999******************99 PP
TIGR00954 551 sdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAv....svdvEdklyelakevgitllsvs..hrksL 642
d+ e+ L++ L d ++ d+++ LsgG++qR+ +AR + kPk ++DE tsA+ ++ vE+ + +l k++ i +++ s + + +
MMSYN1_0427 138 LDQICEESLVKAALWDEVK-----DILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALdpiaTLKVEELVLDLKKDYTIVMVTHSlqQATRI 230
9999999999999887776.....556666668******************************73333579**************9997651144445 PP
TIGR00954 643 wkyHey 648
y y
MMSYN1_0427 231 SDYTGY 236
555555 PP
>> TIGR00956 3a01205: pleiotropic drug resistance family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.9 0.0 0.00011 0.007 758 810 .. 19 69 .. 1 91 [. 0.73
2 ! 22.6 0.1 6.3e-08 4.2e-06 894 951 .. 158 214 .. 144 229 .. 0.82
Alignments for each domain:
== domain 1 score: 11.9 bits; conditional E-value: 0.00011
TIGR00956 758 eifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLa 810
e++d ++ ++k+k + L +++ +k ++t +G sG GkttLl +
MMSYN1_0427 19 TAIEIKD--FNFFYNKGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSIN 69
4445564..4456788899999999999********************98764 PP
== domain 2 score: 22.6 bits; conditional E-value: 6.3e-08
TIGR00956 894 vvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrklada 951
++ p GL+ q +rl i+ ++ kPk +l +DePts LD ++ + +l+ l +
MMSYN1_0427 158 ILTSPALGLSGGQQQRLCIARAIAMKPK-ILLMDEPTSALDPIATLKVEELVLDLKKD 214
55678889*******************5.6679********99999998888777665 PP
>> TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.0 3.2e-05 0.0021 335 387 .. 19 68 .. 3 78 .. 0.84
2 ! 18.6 0.0 2e-06 0.00013 459 530 .. 155 224 .. 133 247 .. 0.85
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 3.2e-05
TIGR01194 335 dslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstlikll 387
++e+kd ++ y++ ++ + f i++ i++ + +G GcGk+tl+k +
MMSYN1_0427 19 TAIEIKDFNFFYNKGKTQSLF---NINMEIKEKSITTFIGPSGCGKTTLLKSI 68
578999999999888887766...59************************976 PP
== domain 2 score: 18.6 bits; conditional E-value: 2e-06
TIGR01194 459 vedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishdd 530
v+d s + ls Gq++rl + a + +ll+de ++ dp + eel+ dlk+ ti++++h
MMSYN1_0427 155 VKDILTSPALGLSGGQQQRLCIARAIAMKPKILLMDEPTSALDPI-ATLKVEELVLDLKK-DYTIVMVTHSL 224
55666677789***************99999************96.56889*******97.5899****974 PP
>> TIGR00630 uvra: excinuclease ABC subunit A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.3 0.1 0.0005 0.033 617 653 .. 32 68 .. 2 102 .. 0.81
2 ! 12.8 0.0 8.5e-05 0.0056 823 892 .. 160 225 .. 158 234 .. 0.73
Alignments for each domain:
== domain 1 score: 10.3 bits; conditional E-value: 0.0005
TIGR00630 617 gakennlkdidvsiplglltvitGvsgsGkstLindi 653
+ k++ l +i+++i+ + +t+ G+sg Gk tL++ i
MMSYN1_0427 32 KGKTQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSI 68
567888999************************9876 PP
== domain 2 score: 12.8 bits; conditional E-value: 8.5e-05
TIGR00630 823 GqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnld 892
pa LsGG qr+ +a+ + + + ++DePt L k+ e++ l k t+v++ h l+
MMSYN1_0427 160 TSPALGLSGGQQQRLCIARAIAMK---PKILLMDEPTSALDPIATLKVEELVLDLK-KDYTIVMVTHSLQ 225
568889999999999999988766...45889999999987666666667666664.5678999999885 PP
>> TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.2 0.1 8.5e-05 0.0056 84 143 .. 9 69 .. 1 82 [. 0.62
Alignments for each domain:
== domain 1 score: 14.2 bits; conditional E-value: 8.5e-05
TIGR00157 84 eedaekeqleelknlgYkvllvsvkneegleelkekl.kkrisvfaGqSGVGKSSLiNlld 143
+++ +ke l++ ++ ++ + ++++l +++ ++ +k+i+ f+G+SG GK L+ ++
MMSYN1_0427 9 NTKPKKEPLKTAIEIKDFNFFYNKGKTQSLFNINMEIkEKSITTFIGPSGCGKTTLLKSIN 69
555554444444444333334444445555555555515779**************87764 PP
>> TIGR00602 rad24: checkpoint protein rad24
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.4 0.1 0.00015 0.0099 105 130 .. 43 68 .. 34 75 .. 0.83
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 0.00015
TIGR00602 105 LeskkkriLLitGPsGCgKsTvikiL 130
+e k+k i GPsGCgK+T +k +
MMSYN1_0427 43 MEIKEKSITTFIGPSGCGKTTLLKSI 68
677888899999**********9976 PP
>> TIGR02528 EutP: ethanolamine utilization protein, EutP
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.8 0.1 0.00037 0.024 4 22 .. 52 70 .. 48 91 .. 0.85
Alignments for each domain:
== domain 1 score: 12.8 bits; conditional E-value: 0.00037
TIGR02528 4 mliGsvgcGkttLtqaLkg 22
+iG++gcGkttL ++++
MMSYN1_0427 52 TFIGPSGCGKTTLLKSINR 70
59***********998874 PP
>> TIGR02858 spore_III_AA: stage III sporulation protein AA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.0 0.0 0.00032 0.021 100 137 .. 35 72 .. 15 99 .. 0.77
2 ? -2.7 0.0 10 6.6e+02 194 216 .. 181 203 .. 175 222 .. 0.78
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 0.00032
TIGR02858 100 aeklleylvknnrvlntliisPPqsGkttllrdlaral 137
+++l++ ++ ++ t i+P +Gkttll+ + r
MMSYN1_0427 35 TQSLFNINMEIKEKSITTFIGPSGCGKTTLLKSINRLN 72
5566665556666677889***************9963 PP
== domain 2 score: -2.7 bits; conditional E-value: 10
TIGR02858 194 slsPdvivvdeiGreedvealle 216
++ P+++++de + d a l+
MMSYN1_0427 181 AMKPKILLMDEPTSALDPIATLK 203
68899999999777766555555 PP
>> TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.5 0.0 0.00027 0.018 13 59 .. 25 69 .. 17 76 .. 0.79
Alignments for each domain:
== domain 1 score: 12.5 bits; conditional E-value: 0.00027
TIGR03420 13 tldnFlagenaellaalrelaeakaerllylwGesgsGksHLLqAac 59
++ F+ +++++ l +++ +e k+++++ ++G+sg+Gk+ LL+++
MMSYN1_0427 25 DFNFFYNKGKTQSLFNIN--MEIKEKSITTFIGPSGCGKTTLLKSIN 69
566677776666666665..578999999**************9986 PP
>> TIGR03499 FlhF: flagellar biosynthesis protein FlhF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.2 0.1 0.00046 0.03 191 213 .. 42 63 .. 34 66 .. 0.81
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 0.00046
TIGR03499 191 edeilekggviaLvGptGvGKTT 213
+ ei+ek + +++Gp G GKTT
MMSYN1_0427 42 NMEIKEKS-ITTFIGPSGCGKTT 63
56777777.*************9 PP
>> TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.7 0.2 0.00075 0.05 426 456 .. 26 67 .. 25 73 .. 0.88
2 ? -1.2 0.0 1.5 99 628 681 .. 177 228 .. 175 258 .. 0.80
Alignments for each domain:
== domain 1 score: 9.7 bits; conditional E-value: 0.00075
TIGR00929 426 fNfHvrdake...........vlGhTlIfGptgsGKTvllnf 456
fNf+ ++ k+ + T +Gp+g GKT+ll+
MMSYN1_0427 26 FNFFYNKGKTqslfninmeikEKSITTFIGPSGCGKTTLLKS 67
8999998777899999999888999**************975 PP
== domain 2 score: -1.2 bits; conditional E-value: 1.5
TIGR00929 628 eealdgrrfliiiDEawkllgdpvfeakikeilktlRKaNgivvlatQsindll 681
+a+ +++++++DE + l dp+ k++e++ l+K +i v+ t s+++++
MMSYN1_0427 177 ARAIAMKPKILLMDEPTSAL-DPIATLKVEELVLDLKKDYTI-VMVTHSLQQAT 228
56677799999999999987.689999999999999776665.45566666655 PP
>> TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.5 0.2 0.00053 0.035 11 48 .. 26 68 .. 19 71 .. 0.68
Alignments for each domain:
== domain 1 score: 10.5 bits; conditional E-value: 0.00053
TIGR03185 11 lGayrgr....qevdLsvsse.kpiiLlgglNGaGKTTlLdai 48
+ + ++ ++++++ + k i + g G+GKTTlL++i
MMSYN1_0427 26 FNFFYNKgktqSLFNINMEIKeKSITTFIGPSGCGKTTLLKSI 68
555544433433355555544599999**************99 PP
>> TIGR00611 recf: DNA replication and repair protein RecF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.0 0.0 0.0025 0.17 22 46 .. 47 71 .. 36 75 .. 0.82
2 ? -0.6 0.1 2.1 1.4e+02 305 338 .. 186 222 .. 175 234 .. 0.73
Alignments for each domain:
== domain 1 score: 9.0 bits; conditional E-value: 0.0025
TIGR00611 22 spgvnvlvGeNgqGKtnlleaiyyl 46
++ ++ ++G+ g GKt ll++i l
MMSYN1_0427 47 EKSITTFIGPSGCGKTTLLKSINRL 71
45689****************9766 PP
== domain 2 score: -0.6 bits; conditional E-value: 2.1
TIGR00611 305 illlDDvaseLDeq...rreaLaelleekgeqvfvta 338
ill+D s LD + e+L+ l++ + v+vt
MMSYN1_0427 186 ILLMDEPTSALDPIatlKVEELVLDLKKDYTIVMVTH 222
99**********7522266777777777777777775 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (269 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 265 (0.0590463); expected 89.8 (0.02)
Passed bias filter: 230 (0.0512478); expected 89.8 (0.02)
Passed Vit filter: 110 (0.0245098); expected 4.5 (0.001)
Passed Fwd filter: 68 (0.0151515); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 68 [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.30
# Mc/sec: 1287.65
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0427 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0428 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0428.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0428/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0428 [L=224]
Description: phoU_full: phosphate transport system regulatory protein PhoU 5=Equivalog Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-49 166.9 14.2 1.3e-49 166.7 14.2 1.0 1 TIGR02135 phoU_full: phosphate transport system regulatory p
Domain annotation for each model (and alignments):
>> TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 166.7 14.2 2.8e-53 1.3e-49 2 212 .] 6 216 .. 5 216 .. 0.97
Alignments for each domain:
== domain 1 score: 166.7 bits; conditional E-value: 2.8e-53
TIGR02135 2 rfeeeLkelreellemgklveeqlekalkalae.kdkelakkvieddkkinalevkieeealrliakqqPvakDLRliisiikissDLERiGDeakki 98
++++L++lr+ + +m+++++ q+++++ ++e ++ a+kvie+dk in++++++++ al+ i+kq+ vakDLRl+i i i++++ERi+D++k i
MMSYN1_0428 6 ILDRDLDQLRSLIENMIEETKIQYANSYLVIKEeNKLIDAQKVIEHDKIINDMQNEFTSIALWKISKQKLVAKDLRLAIGGILITREIERIADYSKGI 103
5799*****************************788899*********************************************************** PP
TIGR02135 99 akivlrlkeeeaksevleelekmgklvlkmlkkaldafankdaelakqvaeldeevdelyrqivrelveym..kedpenieaalelllvakalERigD 194
+k+++ +k++e+ +l +++++++lv++ml+ + d f+n +++++qv++l+e+++ +r+++++l++++ k++++++e+++++l ++ +lER gD
MMSYN1_0428 104 SKFFIYYKPNEK---HLLMISELYELVVEMLDIFSDIFENLKVDKEQQVLSLEEKINTKFRSFYDQLIDDIrqKTTKAEAEEIAAVLKQMFNLERAGD 198
********9886...89******************************************************7777788888***************** PP
TIGR02135 195 hatnIaerviylktgkiv 212
+ n++e++ ++kt+k++
MMSYN1_0428 199 NLLNVQEIINFIKTSKFI 216
**************9986 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (224 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 385 (0.0857843); expected 89.8 (0.02)
Passed bias filter: 88 (0.0196078); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1608.37
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0428 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0429 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0429.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0429/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0429 [L=409]
Description: ftsY: signal recognition particle-docking protein FtsY 5=Equivalog Protein export
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.3e-107 355.5 10.9 4.3e-107 355.5 10.9 2.3 2 TIGR00064 ftsY: signal recognition particle-docking protein
4.9e-56 188.3 10.1 4.9e-56 188.3 10.1 2.0 3 TIGR00959 ffh: signal recognition particle protein
5.7e-47 158.5 5.8 5.7e-47 158.5 5.8 1.9 2 TIGR01425 SRP54_euk: signal recognition particle protein SRP
5.2e-17 60.7 26.2 5.2e-17 60.7 26.2 2.6 2 TIGR03499 FlhF: flagellar biosynthesis protein FlhF
1.1e-05 23.0 0.1 1.1e-05 23.0 0.1 2.7 3 TIGR00073 hypB: hydrogenase accessory protein HypB
4e-05 21.2 3.7 4e-05 21.2 3.7 2.9 2 TIGR01007 eps_fam: capsular exopolysaccharide family
------ inclusion threshold ------
0.18 8.4 18.1 0.0083 12.8 9.1 2.5 2 TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase
0.74 6.9 13.7 0.0024 15.0 2.4 2.6 2 TIGR01969 minD_arch: cell division ATPase MinD
2.2 5.3 15.3 0.16 9.0 0.0 2.8 2 TIGR00750 lao: LAO/AO transport system ATPase
Domain annotation for each model (and alignments):
>> TIGR00064 ftsY: signal recognition particle-docking protein FtsY
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.4 11.7 0.26 1.3e+02 8 67 .. 40 97 .. 4 114 .. 0.56
2 ! 355.5 10.9 8.5e-110 4.3e-107 2 278 .. 121 397 .. 120 398 .. 0.92
Alignments for each domain:
== domain 1 score: -0.4 bits; conditional E-value: 0.26
TIGR00064 8 eeLeev.LleaDvglevvekiieelkkelkekkvkeeeklkellkeelkealkeileketk 67
+e+e++ +++D+++e++++ +++kk+++++++k+e+++ e+lke+ k+++++ ++k+ +
MMSYN1_0429 40 KEIEQEpVVNQDIQVEIIKE--NKIKKTKTSETKKQEKQT-ETLKEKKKREKQKEKDKKVE 97
24543325666666666654..444444444433333333.33333333333332222222 PP
== domain 2 score: 355.5 bits; conditional E-value: 8.5e-110
TIGR00064 2 ldeevleeLeevLleaDvglevvekiieelkkelkekkvkeeeklkellkeelkealkeileketklelkelkeekkpnvillvGvNGvGKTttiaKl 99
+d+e++eeLe+vL+++D+g+++v k+++ ++k++k+++ e+ k + + + + + + +++++k++++ +e+++n+++lvGvNG+GKTt++aK+
MMSYN1_0429 121 ADDEFFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWTNKKYRI----DFKENRLNIFMLVGVNGTGKTTSLAKM 214
699******************************9999877766664444444444555555555554....459************************ PP
TIGR00064 100 akllkkegkkvllaAgDTFrAaAieQleewak.rlg..vkvikqkeg.adpaavifdaikkakaknidvvliDTaGRlqnkknLmdelkkikrvikkv 193
a+++++ g+kvl+aA+DTFrA+A++Qleew+k rl+ v+++k+++ adpa+v+fdaikkak++n+d++liDTaGRlqnk+nLm el+k++++i++v
MMSYN1_0429 215 ANYYAELGYKVLIAAADTFRAGATQQLEEWIKtRLNnkVDLVKTNKLnADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQV 312
*******************************98665559****99977************************************************** PP
TIGR00064 194 kkeapdevllvldattGqnaleqakvFneaveldgiilTKlDgtakgGivlaikeelklpvkligvGekidDLaeFdaeefveal 278
+k+ap+evllv+dattGqn++ qa++F+++++++giilTK+D+t+kgGi laike l++p+k+igvGek+dDL +Fd+++++ +l
MMSYN1_0429 313 EKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHL 397
**********************************************************************************987 PP
>> TIGR00959 ffh: signal recognition particle protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.7 3.4 1.9 9.5e+02 307 339 .. 22 54 .. 14 104 .. 0.57
2 ? 0.1 0.4 0.13 67 301 336 .. 79 114 .. 75 120 .. 0.81
3 ! 188.3 10.1 9.9e-59 4.9e-56 7 287 .. 106 391 .. 98 397 .. 0.87
Alignments for each domain:
== domain 1 score: -3.7 bits; conditional E-value: 1.9
TIGR00959 307 eevvdeeeakklaeklakeefdleDlleqlrqi 339
e ++d++e+++ +e++ ++e++ e +++q q+
MMSYN1_0429 22 EPILDQQEQQEEQEQIIEKEIEQEPVVNQDIQV 54
555555555555555555555555544443333 PP
== domain 2 score: 0.1 bits; conditional E-value: 0.13
TIGR00959 301 sLvekaeevvdeeeakklaeklakeefdleDlleql 336
+L ek +++ ++e+ kk+++ + k+ f+++ +++l
MMSYN1_0429 79 TLKEKKKREKQKEKDKKVEKAMLKSAFNFSKDIKKL 114
788999999999999999999999999998666665 PP
== domain 3 score: 188.3 bits; conditional E-value: 9.9e-59
TIGR00959 7 klkkileklskkkkitekdikealkeirlaLleaDVnlkvvkefikkvkekalgqevlkslspkqqlikivkeeLval.lgeesaelklaekkpavil 103
+++k ++klskk k + + +e+ L+++D +k+v ++ + v++k++ ++ ++++ + l++ +++ ++ ++++ +++++e++ + +
MMSYN1_0429 106 NFSKDIKKLSKKYKQADDEFF---EELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFENIK--DALVESLYQAYTDNdWTNKKYRIDFKENRLNIFM 198
466777888777777776655...555566***********************999999887..889999999988652788899************* PP
TIGR00959 104 lvGLqGsGKtttaaKlakklkkkekkkvllvalDlyRpaAveqLkv.lgeqvg..vpvfe.kekekspveiakealeeakeekvdvvivDtaGRlqid 197
lvG+ G+GKtt+ aK+a++ + + kvl++a+D+ R++A++qL+ + ++++ v++++ ++ +++p++++ +a+++ake+++d++++DtaGRlq
MMSYN1_0429 199 LVGVNGTGKTTSLAKMANY-YAELGYKVLIAAADTFRAGATQQLEEwIKTRLNnkVDLVKtNKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNK 295
******************9.8889********************86234444411444441333578******************************* PP
TIGR00959 198 eelmeelkeikevln......PdeillVvdaltGqdavnvakeFderlgltgvvltklDgDargGaaLsvksvtgkPikfigvgEkledleeFhpe 287
+lm+el+++ ++++ P+e+llV+da tGq+ v a+eF++ +++g++ltk+D+ ++gG+ L++k++++ Pik+igvgEk++dl +F +
MMSYN1_0429 296 TNLMAELEKMNKIIQqveksaPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDID 391
********9998765455555*********************************************************************999766 PP
>> TIGR01425 SRP54_euk: signal recognition particle protein SRP54
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -4.4 5.0 3.2 1.6e+03 26 69 .. 34 81 .. 5 113 .. 0.61
2 ! 158.5 5.8 1.1e-49 5.7e-47 28 293 .. 123 397 .. 105 405 .. 0.86
Alignments for each domain:
== domain 1 score: -4.4 bits; conditional E-value: 3.2
TIGR01425 26 vlnellkeist.allesdvnvklvrklrenikk.....kinleelasgln 69
+ + + kei++ ++++d++v ++++ + ikk + + e+ +++l+
MMSYN1_0429 34 QEQIIEKEIEQePVVNQDIQVEIIKENK--IKKtktseTKKQEKQTETLK 81
3333446776525778888888887643..44411122222333333333 PP
== domain 2 score: 158.5 bits; conditional E-value: 1.1e-49
TIGR01425 28 nellkeistallesdvnvklvrklrenikkkinleelasglnkrkliqkavfeelvnlvd.pkveafkpkkgkssvimfvGlqGaGktttitklalyy 124
+e+++e++ l+++d+ +k+v k+ + ++kk + ++ + n + + +++++ + +k+ + k ++ ++ m+vG++G+Gktt+++k+a yy
MMSYN1_0429 123 DEFFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFE--NIKDALVESLYQAYTDNDWtNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 218
4678899999********************998776555..4456677777777765433033344667888899*********************** PP
TIGR01425 125 kkkGfkvalvcadtfraGafdqlkqnat...kakipfy.GsylesdpvkiaseGvekfkkekfdiiivdtsGrhkqeeelfeemlqvaeaik...... 212
+ G+kv + +adtfraGa +ql+ + + k+ +l++dp + ++ ++k k++++d++++dt+Gr +++ +l+ e++++++ i+
MMSYN1_0429 219 AELGYKVLIAAADTFRAGATQQLEEWIKtrlNNKVDLVkTNKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQqveksa 316
***********************975431114677766256899************************************999877776665444555 PP
TIGR01425 213 pdsiifvmdgsiGqaaesqakafkdsvevgsviitkldGhakGGGalsavaatkspiifiGtGekvddleifdaksfvskl 293
p ++++v+d++ Gq qa+ f + ++v+ +i+tk+d +kGG l+ pi +iG Gekvddl fd ++++ +l
MMSYN1_0429 317 PHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHL 397
99***************************************************************************9887 PP
>> TIGR03499 FlhF: flagellar biosynthesis protein FlhF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 60.7 26.2 1e-19 5.2e-17 51 286 .] 42 290 .. 3 290 .. 0.64
2 ? -1.6 0.1 1 5.2e+02 111 132 .. 296 317 .. 292 353 .. 0.71
Alignments for each domain:
== domain 1 score: 60.7 bits; conditional E-value: 1e-19
TIGR03499 51 ideeesasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlselaleeedperakllkkll 148
i +++ +++ + +e++ kk +++e+k++++++ + k++++ +++++k+++ e+++ k + + ++k+ ++ + + d+ +++l++ l+
MMSYN1_0429 42 I----EQEPVVNQDIQVEIIKENKIKKTKTSETKKQEKQTETLKEKKKREKQKEKDKKVEKAMLKSAFNFSKDIKKLSKKYK-QADDEFFEELEDVLI 134
2....22223333333333333333333333333333333333444444444444444446666666666666666666654.88888999******* PP
TIGR03499 149 eagvseelarelleklkekedaeeareklreaLekklsvkkeedeilekg..........gviaLvGptGvGKTTTlAKLAarfvlehgkkkValiTt 236
+ ++ +++ ++ + +++k+++++ e++++aL ++l + +++++ +k+ +++LvG G GKTT+lAK+A +++ g kV + +
MMSYN1_0429 135 QTDMGMKMVLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWTNKKyridfkenrlNIFMLVGVNGTGKTTSLAKMANYYAEL-GY-KVLIAAA 230
*********99999999988888888888888888886666666655444323232222369********************99976.55.******* PP
TIGR03499 237 DtyRiGAveQLktYaki.lgvpvkvvkdpk.......eleeal..eelkdkdliLiDTaG 286
Dt+R GA +QL+ + k+ l+ +v+ vk+ k + +a+ ++ +++dl LiDTaG
MMSYN1_0429 231 DTFRAGATQQLEEWIKTrLNNKVDLVKTNKlnadpasVVFDAIkkAKEQNYDLLLIDTAG 290
**************99769*****999865222221122234411456789********9 PP
== domain 2 score: -1.6 bits; conditional E-value: 1
TIGR03499 111 eelrkelkalkellekqlsela 132
+l++el+++++++++ +++
MMSYN1_0429 296 TNLMAELEKMNKIIQQVEKSAP 317
5688899999999988877664 PP
>> TIGR00073 hypB: hydrogenase accessory protein HypB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.5 0.4 1.4 7.1e+02 4 29 .. 50 75 .. 47 80 .. 0.74
2 ! 23.0 0.1 2.2e-08 1.1e-05 12 122 .. 176 292 .. 168 293 .. 0.84
3 ? 1.7 0.1 0.07 35 164 201 .. 294 330 .. 291 346 .. 0.80
Alignments for each domain:
== domain 1 score: -2.5 bits; conditional E-value: 1.4
TIGR00073 4 veveidiLsknkrlaeknrerlekkg 29
++++++i+++nk++ k e+ ++++
MMSYN1_0429 50 QDIQVEIIKENKIKKTKTSETKKQEK 75
47888999999998888777665554 PP
== domain 2 score: 23.0 bits; conditional E-value: 2.2e-08
TIGR00073 12 sknkrlaeknrerlekkgllvlnllssiGsGktlllekliealkk.evkiavieGDlitkaDaeRlr.....kagvkaiqintGkeChLdaklvadal 103
++n+ +k r ++++ l ++ l++ G+Gkt+ l k+++ + +k+ + + D ++l+ + + k+ ++t k a++v da+
MMSYN1_0429 176 TDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAElGYKVLIAAADTFRAGATQQLEewiktRLNNKVDLVKTNKLNADPASVVFDAI 273
57999999*******************************99765427999999999988777777762222235678888899888888899****** PP
TIGR00073 104 kdlelddkdlllienvGnL 122
k+ + ++ dllli+ G L
MMSYN1_0429 274 KKAKEQNYDLLLIDTAGRL 292
**************99976 PP
== domain 3 score: 1.7 bits; conditional E-value: 0.07
TIGR00073 164 nkvdlveavdadvekvkadvkkinPeveiilvsaktge 201
nk++l++ ++ +++k++++v k +P+ ++ ++a+tg+
MMSYN1_0429 294 NKTNLMAELE-KMNKIIQQVEKSAPHEVLLVIDATTGQ 330
7888888887.6899999999999**99999**99985 PP
>> TIGR01007 eps_fam: capsular exopolysaccharide family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -5.8 5.6 9 4.5e+03 157 178 .. 56 77 .. 35 119 .. 0.66
2 ! 21.2 3.7 7.9e-08 4e-05 9 185 .. 186 378 .. 180 384 .. 0.70
Alignments for each domain:
== domain 1 score: -5.8 bits; conditional E-value: 9
TIGR01007 157 vveaekikkrevkkakeqleqa 178
+++ +kikk + + +k+q +q+
MMSYN1_0429 56 IIKENKIKKTKTSETKKQEKQT 77
3444444444444444443333 PP
== domain 2 score: 21.2 bits; conditional E-value: 7.9e-08
TIGR01007 9 niqfsgaelkvllitsvkageGkstvsaniavafaqaGyktLliDgDlrksvlsg....vfksr.nkikGL..tnllsgk..adlsdaiketeienLt 97
i+f+++ l ++++ v+ g Gk+t a +a +a+ Gyk+L+ +D+ ++ + k+r n+++ L tn l + + daik+++ +n +
MMSYN1_0429 186 RIDFKENRLNIFMLVGVN-GTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQqleeWIKTRlNNKVDLvkTNKLNADpaSVVFDAIKKAKEQNYD 282
589999999999998885.89**************************966543330111233322445555224444432213466899888776644 PP
TIGR01007 98 vi...taGpvpPnPteLlqs.kkfkelletlrky..fD.yiiiD.tpPigvviDaaiiaravdas.iLvveaekikkrevkkakeqleqagskiLGv 185
++ taG + n t+L+++ +k+++++++++k ++ +++iD t+ + vi a+ +++ +d s i+ ++ + + k + a ++l + k++Gv
MMSYN1_0429 283 LLlidTAGRLQ-NKTNLMAElEKMNKIIQQVEKSapHEvLLVIDaTTGQNGVIQAEEFSKVADVSgIILTKMDSTSKGGIGLAIKELLNIPIKMIGV 378
33223677775.88888876489*******9986334424567745678899999999999986647788889999988888888887777777775 PP
>> TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -4.3 10.4 2.5 1.3e+03 211 325 .. 28 143 .. 14 155 .. 0.82
2 ? 12.8 9.1 1.7e-05 0.0083 232 370 .. 104 249 .. 75 330 .. 0.70
Alignments for each domain:
== domain 1 score: -4.3 bits; conditional E-value: 2.5
TIGR04291 211 araaeeLaaiglk..nqllvingvleeeaeedalasallkreqkalqelpeilkelpreelplkpvnlvGleaLrqllkeekaaesesaateekedlp 306
+ +ee ++i k +q v+n ++ e +++ ++ ++ e k+ ++ +e+lke+++ e + ++ + v + L++ ++ +k +++ s ++ ++ d +
MMSYN1_0429 28 QEQQEEQEQIIEKeiEQEPVVNQDIQVEIIKENKIKKTKTSETKKQEKQTETLKEKKKREKQKEKDKKVEKAMLKSAFNFSKDIKKLS-KKYKQADDE 124
5555555555433125778999999988888888899999999999999***********9999999************999999998.777888889 PP
TIGR04291 307 slsklidelakkekglill 325
+++l d l++++ g+ ++
MMSYN1_0429 125 FFEELEDVLIQTDMGMKMV 143
9999999999999988776 PP
== domain 2 score: 12.8 bits; conditional E-value: 1.7e-05
TIGR04291 232 vleeeaeedalasallkreqkalqelpeilkelp.reelplkpvnlvGleaLrqllkeekaaesesaateekedlpsl.sklidelakkekglillmG 327
++ +++ +l+++ ++ +++ ++el ++l ++ +++lk nlv ++ r+ e+ + + ++ ++ +d++ +k + +++ ++++l+G
MMSYN1_0429 104 AFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTDmGMKMVLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWTnKKYRIDFKENRLNIFMLVG 201
4544566678999999999999999999987665157899999999999999987666655555554545555544440445568999999******* PP
TIGR04291 328 kGGvGkttvaaaiavkLaekglkvhLttsdP.....aahleetlsgdl 370
G Gktt a++a ae g+kv+++++d +++lee ++ +l
MMSYN1_0429 202 VNGTGKTTSLAKMANYYAELGYKVLIAAADTfragaTQQLEEWIKTRL 249
****************************99522222445555554443 PP
>> TIGR01969 minD_arch: cell division ATPase MinD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -4.9 3.5 6 3e+03 196 239 .. 50 89 .. 15 101 .. 0.45
2 ? 15.0 2.4 4.9e-06 0.0024 3 119 .. 196 329 .. 194 351 .. 0.65
Alignments for each domain:
== domain 1 score: -4.9 bits; conditional E-value: 6
TIGR01969 196 eDpevrraaakgepvvvkkpespaakalvelaaelagieyevke 239
+D +v + +e ++k+++s++ k + ++l + +++ k+
MMSYN1_0429 50 QDIQV---EIIKENKIKKTKTSETKKQ-EKQTETLKEKKKREKQ 89
22222...2344445555555554443.3334444444444444 PP
== domain 2 score: 15.0 bits; conditional E-value: 4.9e-06
TIGR01969 3 itiasGkGGtGkttvtanlgvaLaklGkkvlvlDaDiama....nLe.li.lgledk.k.vtLhdvLagead.ikdaiyegpeg...vkviPagvsle 88
i + G GtGktt a ++ a+lG kvl+ aD a Le i +l++k + v + a+ a+ + dai + +e+ i ++ l
MMSYN1_0429 196 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAgatqQLEeWIkTRLNNKvDlVKTNKLNADPASvVFDAIKKAKEQnydLLLIDTAGRLQ 293
67788999****************************86651121343122122332212133345556666624588887665422266777766555 PP
TIGR01969 89 klrk..akpekLedvlkeiaddv..d.flliDaPaG 119
+ + a++ek++ +++++++++ + +l+iDa G
MMSYN1_0429 294 NKTNlmAELEKMNKIIQQVEKSAphEvLLVIDATTG 329
443322788888888888887652222466788777 PP
>> TIGR00750 lao: LAO/AO transport system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -4.2 12.7 3.3 1.7e+03 180 296 .. 13 130 .. 10 134 .. 0.73
2 ? 9.0 0.0 0.00032 0.16 36 71 .. 196 231 .. 185 304 .. 0.92
Alignments for each domain:
== domain 1 score: -4.2 bits; conditional E-value: 3.3
TIGR00750 180 nkaDkeeaekerlarlelsldleelferekgWrPkvlktsavegrGikelv.daieehkkvlkksGkleekrrersveelkklveeevlkkvkakeev 276
k+++ e+++ l ++e + ++e+++e+e + +P v + ve +++ + e kk k++ l+ek++ +++e k ve+++lk ++ +
MMSYN1_0429 13 KKTNQVEQDEPILDQQEQQEEQEQIIEKEIEQEPVVNQDIQVEIIKENKIKkTKTSETKKQEKQTETLKEKKKREKQKEKDKKVEKAMLKSAFNFSKD 110
5666666666666677778888999***9999999866555543333333314567888888999999998888888888999999999999998889 PP
TIGR00750 277 yrdllekvkakeldpytaae 296
++l +k k+ + + ++ +e
MMSYN1_0429 111 IKKLSKKYKQADDEFFEELE 130
99999988888877766665 PP
== domain 2 score: 9.0 bits; conditional E-value: 0.00032
TIGR00750 36 vvGltGvPGaGkstlveklieelrrrGlkvaviavD 71
+ l Gv G Gk t + k+++ + G+kv + a D
MMSYN1_0429 196 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 231
56689**************************99988 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (409 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 1180 (0.262923); expected 89.8 (0.02)
Passed bias filter: 186 (0.0414439); expected 89.8 (0.02)
Passed Vit filter: 52 (0.0115865); expected 4.5 (0.001)
Passed Fwd filter: 10 (0.00222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 9 [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.25
# Mc/sec: 2349.37
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0429 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0430 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0430.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0430/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0430 [L=111]
Description: Sigma3 and sigma4 domains of RNA polymerase sigma factors? 2=Generic Regulation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-07 28.1 1.0 7.3e-07 27.5 0.2 1.7 2 TIGR02985 Sig70_bacteroi1: RNA polymerase sigma-70 factor, B
1.7e-06 25.8 0.8 2.5e-06 25.2 0.2 1.5 2 TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70
------ inclusion threshold ------
0.025 12.5 0.0 0.037 11.9 0.0 1.3 1 TIGR04111 BcepMu_gp16: phage-associated protein, BcepMu gp16
0.039 11.8 0.0 0.047 11.5 0.0 1.1 1 TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, si
Domain annotation for each model (and alignments):
>> TIGR02985 Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.5 0.2 6.5e-10 7.3e-07 98 158 .. 9 66 .. 1 73 [. 0.82
2 ? -0.9 0.0 0.34 3.9e+02 57 104 .. 83 99 .. 67 107 .. 0.44
Alignments for each domain:
== domain 1 score: 27.5 bits; conditional E-value: 6.5e-10
TIGR02985 98 eleskeleeiieeaiekLPeqcrkifklsrfeglsnkeIAeelgiSvkTVekhikkAlkkL 158
+l el e+ + + e L++++++ f+l++ e+ls +eIA+e +iS+ +V i+k+ k L
MMSYN1_0430 9 TL---ELSELFKIYKELLTDKQKQYFELYIDEDLSLSEIADEFNISKTAVYDSISKTSKLL 66
33...44444455556689*************************************98876 PP
== domain 2 score: -0.9 bits; conditional E-value: 0.34
TIGR02985 57 ltivknrclnylrhkeveekykeelsekeedeieleeeeeeeleskel 104
++++ n ++++k++
MMSYN1_0430 83 ISLINKIETN-------------------------------QIDEKQF 99
3333333333...............................3333333 PP
>> TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.2 0.2 2.2e-09 2.5e-06 107 157 .. 11 62 .. 3 68 .. 0.80
2 ? -1.9 0.0 0.48 5.4e+02 23 23 .. 91 91 .. 72 108 .. 0.47
Alignments for each domain:
== domain 1 score: 25.2 bits; conditional E-value: 2.2e-09
TIGR02937 107 lrerleqale.kLperereilklryleglslkeiAeelgisqetvsrilkra 157
+ +l ++ + L++++++ ++l+ e+lsl+eiA+e++is+ v ++++
MMSYN1_0430 11 ELSELFKIYKeLLTDKQKQYFELYIDEDLSLSEIADEFNISKTAVYDSISKT 62
4445555555156*******************************99888876 PP
== domain 2 score: -1.9 bits; conditional E-value: 0.48
TIGR02937 23 g 23
MMSYN1_0430 91 T 91
2 PP
>> TIGR04111 BcepMu_gp16: phage-associated protein, BcepMu gp16 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.9 0.0 3.3e-05 0.037 13 39 .. 38 64 .. 26 67 .. 0.89
Alignments for each domain:
== domain 1 score: 11.9 bits; conditional E-value: 3.3e-05
TIGR04111 13 GisiseWArengfspnlVyavLngkrk 39
+s+se+A e ++s+++Vy+ ++ ++k
MMSYN1_0430 38 DLSLSEIADEFNISKTAVYDSISKTSK 64
689*****************9998877 PP
>> TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.0 4.2e-05 0.047 102 154 .. 13 66 .. 3 77 .. 0.75
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 4.2e-05
TIGR02983 102 aallealrr.LparqRavvVLryledlseeevAevlGisvGtVksrlsralarL 154
+l ++ ++ L+ +q++ L edls +e+A++ is +V ++s+ + L
MMSYN1_0430 13 SELFKIYKElLTDKQKQYFELYIDEDLSLSEIADEFNISKTAVYDSISKTSKLL 66
566666665256788889999999*******************97777765544 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (111 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 294 (0.065508); expected 89.8 (0.02)
Passed bias filter: 104 (0.0231729); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 797.00
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0430 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0431 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0431.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0431/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0431 [L=257]
Description: putative metallophosphoesterase 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.1e-84 279.1 11.0 9e-84 278.9 11.0 1.0 1 TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505
Domain annotation for each model (and alignments):
>> TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 278.9 11.0 2e-87 9e-84 1 260 [. 1 257 [] 1 257 [] 0.99
Alignments for each domain:
== domain 1 score: 278.9 bits; conditional E-value: 2e-87
TIGR00282 1 ikvlflGdvvGkaGrkivkenlkklkkkykldlvivnaenttnGkGltekiyeslkqsGvdvitmGnhtwskkkildlvdnkkdlvrPlnlsesldGk 98
+kvl++Gdv+ k+Gr++++++lk++ ++ ++d+++vn+entt+Gk + +k+y++ k vdvit Gnh++++ ++l++++ +dl++Pln+s++++G+
MMSYN1_0431 1 MKVLMIGDVYAKPGREMLEKHLKNIVDQNQIDFIVVNGENTTHGKSICKKHYDFYKSLNVDVITSGNHIFKNAEVLEYIKTTNDLLKPLNMSKHTPGN 98
89************************************************************************************************ PP
TIGR00282 99 GslllklndkkiavvnllGtslnlpfavknPfkklkklvnelakkadliivdfhaettsekeafgyvldGyvtavvGththvqtaderilpkGtayit 196
G ++++ n+kkiavv l+G+s+ v+nP++ l+++ + + + d+ +vdfhae+t ek af++ +dG +ta vGththv+tader+lp ta+i+
MMSYN1_0431 99 GNVIVNKNKKKIAVVSLMGQSFMDA--VNNPYDALDEFL-KTNTDFDILLVDFHAESTAEKIAFAFNYDGIITAFVGTHTHVMTADERLLPNKTAFIS 193
*******************999877..***********9.88999***************************************************** PP
TIGR00282 197 dvGmtGpfdsviGanpeqsiklfltgererfevseddaqlnGvvievdlktkkvvkieririvd 260
d+GmtG +ds+iG++ + +ik+ +tg +++f+++ +++ ln v+ie+d+kt+k+ i r+ i d
MMSYN1_0431 194 DIGMTGVIDSIIGVEVNDVIKRAKTGLPVKFNIATGKCWLNAVIIEIDDKTNKATSIKRLTIKD 257
***********************************************************99865 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (257 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 283 (0.063057); expected 89.8 (0.02)
Passed bias filter: 112 (0.0249554); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1845.32
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0431 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0432 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0432.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0432/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0432 [L=387]
Description: metK: methionine adenosyltransferase 5=Equivalog Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-164 545.3 3.0 1.8e-164 545.1 3.0 1.0 1 TIGR01034 metK: methionine adenosyltransferase
Domain annotation for each model (and alignments):
>> TIGR01034 metK: methionine adenosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 545.1 3.0 4.1e-168 1.8e-164 1 375 [. 9 382 .. 9 384 .. 0.99
Alignments for each domain:
== domain 1 score: 545.1 bits; conditional E-value: 4.1e-168
TIGR01034 1 lftsesvseGhPdkiadqisdavLdailkqdkkskvacevlvktglvligGeittsayvdieevarkvikdiGyteaelGfdaktiavleaieeqspd 98
lftsesvseGhPdki+dqisda+Ld++lkqdk++kvacev+++t+ +ligG+i+++a vd+e+var+v+k+iGy + ++G++a+t+ + ie+qspd
MMSYN1_0432 9 LFTSESVSEGHPDKICDQISDAILDEVLKQDKNAKVACEVFATTNYLLIGGQISSTAIVDYEQVARDVLKKIGYVDDAYGINANTCKIDIKIESQSPD 106
69************************************************************************************************ PP
TIGR01034 99 iaqgvekekeeelgaGdqgimfGyatketeellPlpillahkllkklaelrkegklpfLrpdaksqvtleyednkpvkvdtvvlstqhdeeislkelr 196
iaqgve ++ +++gaGdqgimfGyat+e++++lPl+i++ah+l+ ++++ rk+g +++ rpd+ksqvt++y++ + k+dt+++s+qhd++ + e++
MMSYN1_0432 107 IAQGVELSN-DQIGAGDQGIMFGYATNESKTYLPLAITIAHELVYNATSQRKKGLFKWARPDMKSQVTIDYTNINNPKIDTILMSIQHDPNYNEIEFK 203
******888.99************************************************************************************** PP
TIGR01034 197 eaiieeiikpvlpkelldektkilinPtGrfviGGPlgdtGltGrkiivdtyGglarhGGgafsGkdpskvdrsaaylaryiaknlvaaglaervevq 294
+ i+e+i+ v ++ l+ + k+linPtGrfviGGP+gdtGltGrkii+dtyGg++rhGGgafsGkd +kvdrsaay+ ry+aknlvaagla+++e+q
MMSYN1_0432 204 KYIKENIMDLVAKEFNLNTDFKVLINPTGRFVIGGPQGDTGLTGRKIIADTYGGYSRHGGGAFSGKDSTKVDRSAAYMCRYVAKNLVAAGLADKIEIQ 301
********999999999********************************************************************************* PP
TIGR01034 295 lsyaigvaePvsisvetfgtekkseeellkvvkevfdlrpakiiekLdLlkpiyrktaayGhfgreefpWekldkveelke 375
+sy ig+++P+si +etf+t+k++ +++ k+v e+fd++++++i++LdL+kpi+ kt+ yGhfg++++pWekldk+e lke
MMSYN1_0432 302 VSYGIGISQPISIFIETFNTHKVDLNTIYKAVYENFDFSVSSMIKNLDLKKPIFFKTSKYGHFGKKDLPWEKLDKIEVLKE 382
*****************************************************************************9986 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (387 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 188 (0.0418895); expected 89.8 (0.02)
Passed bias filter: 102 (0.0227273); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 2646.42
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0432 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0433 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0433.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0433/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0433 [L=227]
Description: CutC family protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.0039 14.7 0.4 0.0062 14.0 0.4 1.4 1 TIGR00259 thylakoid_BtpA: membrane complex biogenesis protei
Domain annotation for each model (and alignments):
>> TIGR00259 thylakoid_BtpA: membrane complex biogenesis protein, BtpA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.0 0.4 1.4e-06 0.0062 163 237 .. 133 206 .. 100 221 .. 0.74
Alignments for each domain:
== domain 1 score: 14.0 bits; conditional E-value: 1.4e-06
TIGR00259 163 vldtverglaDavilsGkttGkevdleeLklaketvkdvpvlvgsGvnlenveellsiadGvivattlkkdGkin 237
+l+ + + D+v+ sG t ++ le +++ + d+ +l+g Gv+++n+++ l + + + ++ + + n
MMSYN1_0433 133 ALNVLVKHKIDTVLTSGGT-NLNTGLEVIRQLVDQNLDIQILIGGGVDKNNIKQCLTVNNQIHLGRAARMNSSWN 206
5666778888999999864.466777877766666566******************9999887776666655555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (227 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 202 (0.0450089); expected 89.8 (0.02)
Passed bias filter: 108 (0.0240642); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 1629.91
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0433 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0434 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0434.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0434/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0434 [L=438]
Description: gid_trmFO: tRNA:m(5)U-54 methyltransferase 5=Equivalog tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4e-149 495.0 0.3 4.8e-149 494.8 0.3 1.0 1 TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase
8.4e-19 65.3 3.4 4e-14 49.8 0.1 2.9 2 TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modi
5.3e-06 24.3 0.0 1e-05 23.4 0.0 1.4 1 TIGR02032 GG-red-SF: geranylgeranyl reductase family
1.4e-05 22.3 0.0 3.1e-05 21.2 0.0 1.6 1 TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiour
2.5e-05 21.2 0.1 4e-05 20.6 0.1 1.3 1 TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, U
0.0004 17.8 0.0 0.00057 17.2 0.0 1.2 1 TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
0.00062 16.7 0.1 0.002 15.0 0.0 1.7 2 TIGR02732 zeta_caro_desat: 9,9'-di-cis-zeta-carotene desatur
------ inclusion threshold ------
0.012 13.6 0.4 0.32 8.9 0.2 2.5 2 TIGR00315 cdhB: CO dehydrogenase/acetyl-CoA synthase complex
0.012 12.4 0.5 0.25 8.1 0.0 2.7 3 TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
0.012 12.3 0.3 0.023 11.5 0.3 1.4 1 TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
0.012 12.2 0.0 0.024 11.2 0.0 1.4 1 TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
0.015 12.5 0.0 0.025 11.8 0.0 1.4 1 TIGR00292 TIGR00292: thiazole biosynthesis enzyme
0.026 11.2 0.2 0.054 10.2 0.0 1.6 2 TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
0.057 10.5 0.0 0.1 9.6 0.0 1.4 1 TIGR02352 thiamin_ThiO: glycine oxidase ThiO
Domain annotation for each model (and alignments):
>> TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 494.8 0.3 1.5e-151 4.8e-149 2 409 .. 4 409 .. 3 432 .. 0.96
Alignments for each domain:
== domain 1 score: 494.8 bits; conditional E-value: 1.5e-151
TIGR00137 2 kvnviGgGlaGseaawqlakeGvrvilyemrpkkltpahktedlaelvcsnslgakelaraaGllkeelrkldsliieaadeaavpaGGalavdrkif 99
kv++iG+GlaG+eaa+ la++ ++v lye++ + kt+++aelvcsn++++++l +aaG+lk+e+r+l+sl+i+ ad +++ alavdr+ f
MMSYN1_0434 4 KVKIIGAGLAGCEAAYFLANNNIQVELYEVKTLIKNEVQKTNNFAELVCSNTFRSQSLLNAAGILKAEMRRLNSLVIKIADSCKIDGDDALAVDREDF 101
89************************************************************************************************ PP
TIGR00137 100 sesvtekveshpnvtlireevteip.eeevtviatGpltsealseklkeltGedylyfydaaapiveadsvdlekaflasrydkGeaaylncplteee 196
s+++te +++hpn+t+i+++v i e+++t+iatGplt++ l e++++l+G++ l+f da api+ +ds+d++ka+++ r+ G +y+ cpl+e+e
MMSYN1_0434 102 SKKLTEVIKNHPNITIIEQNVSHIDdENDLTLIATGPLTTNELKEDIQRLIGKQKLFFMDASAPIITKDSIDFNKAYYSGRHKLG--KYICCPLNEQE 197
************************725679****************************************************999..5********** PP
TIGR00137 197 ykkfyealleaekvklkdfekavffeGclpieelakrGkktllfGplkpvGlvdartGkkpyavvqlrkedkaGtlynlvGfqtklkygeqkrvlrli 294
+++f ++l++ae+v+lk+fek++ff+Gc pie+lak kk ll Gp+ l d +pyavvqlr++d++ +lyn+vGfqt+lk+ eqkrv++ i
MMSYN1_0434 198 FNEFADNLINAEQVQLKEFEKSIFFKGCQPIEQLAKTSKKLLLKGPMSSNNLLDQN-NHQPYAVVQLRQDDAKDSLYNMVGFQTNLKWPEQKRVFQTI 294
*****************************************************976.689************************************** PP
TIGR00137 295 pglenaefvrlGvmhrntfinspklltaslqlkdredlffaGqltGveGyvasaasGllaGinaarlalGekllklpaetmlGalvnyistksekelq 392
pgl+ a++vr+Gvmh+n +inspk+l+ +lq+ ++++ffaGq+tGveGy++sa+sG+ a in ++ +kl lp++t+lGal nyi+ ++ l+
MMSYN1_0434 295 PGLQKAKIVRYGVMHKNYYINSPKILNFKLQVMRKKNVFFAGQITGVEGYIESASSGIWAAINILAFINNKKLKPLPNTTILGALTNYITNSKIYSLK 392
************************************************************************************************** PP
TIGR00137 393 pmnpnfGllkelekkir 409
pm+ n+G+l++ +k
MMSYN1_0434 393 PMKCNLGILEQENKYQS 409
*********87655444 PP
>> TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.5 0.7 6.1e-06 0.002 2 122 .. 4 125 .. 3 136 .. 0.67
2 ! 49.8 0.1 1.2e-16 4e-14 298 409 .. 269 381 .. 247 393 .. 0.77
Alignments for each domain:
== domain 1 score: 14.5 bits; conditional E-value: 6.1e-06
TIGR00136 2 dviviGaGhaGieaalaaarlgaktllltlnl...dtigklsCnPaiGGlakgilvke...iDalgGlmgkaaDkaalqfrvLnsskGPavralraqi 93
+v +iGaG aG+eaa a +++++l ++ +++ k + n l ++ + ++a g l +++ + l +++ +s k al +
MMSYN1_0434 4 KVKIIGAGLAGCEAAYFLANNNIQVELYEVKTlikNEVQK-TNN--FAELVCSNTFRSqslLNAAGILKAEMRRLNSLVIKIADSCKIDGDDAL--AV 96
5789*********************996443211123322.223..333333333333011455555666666667777777777765555444..47 PP
TIGR00136 94 DkvlYkkavkealenqpnlsllqeevedl 122
D++ + k++ e ++n+pn+++++++v ++
MMSYN1_0434 97 DREDFSKKLTEVIKNHPNITIIEQNVSHI 125
999******************99999876 PP
== domain 2 score: 49.8 bits; conditional E-value: 1.2e-16
TIGR00136 298 seevY.lnGlstslpedvqekivrslkGlenaeilrpgYaieYDyl.dptqlkptLetkkikgLflaGqinGttGYeeaaaqGllaGinaalklqeke 393
++ +Y + G+ t l q+++ ++++Gl++a+i+r+g y+ +p+ l+ L+ + k++f+aGqi G GY e+a+ G+ a in +++k+
MMSYN1_0434 269 KDSLYnMVGFQTNLKWPEQKRVFQTIPGLQKAKIVRYGVMHKNYYInSPKILNFKLQVMRKKNVFFAGQITGVEGYIESASSGIWAAINILAFINNKK 366
44555378******************************8876555515777899***********************************876666654 PP
TIGR00136 394 elilkrseaYiGvlid 409
l + + + +G l +
MMSYN1_0434 367 -LKPLPNTTILGALTN 381
.445555666666655 PP
>> TIGR02032 GG-red-SF: geranylgeranyl reductase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.4 0.0 3.1e-08 1e-05 5 120 .. 7 128 .. 5 148 .. 0.67
Alignments for each domain:
== domain 1 score: 23.4 bits; conditional E-value: 3.1e-08
TIGR02032 5 vvGaGpaGssaAlrlakkGlrVlllekkelpre.keCggalskraveelelpk.......elivnevrkariispngekveieeeeeealvidRkefD 94
++GaG aG+ aA+ la++ ++V l e k l++ ++ ++ + + + + + l+ + +r ++++ ++ +i+ + al++dR++f
MMSYN1_0434 7 IIGAGLAGCEAAYFLANNNIQVELYEVKTLIKNeVQKTNNFAELVCSNTFRSQsllnaagILKAEMRRLNSLVIKIADSCKID--GDDALAVDREDFS 102
9*************************999988776544443333333222222122233334444444444455555444444..679********** PP
TIGR02032 95 elLaekAqeagaelllettvlsveie 120
+ L e +++ + +e+ v ++ e
MMSYN1_0434 103 KKLTEVIKNHPNITIIEQNVSHIDDE 128
*********99999999998874433 PP
>> TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.2 0.0 9.7e-08 3.1e-05 2 32 .. 5 35 .. 4 45 .. 0.92
Alignments for each domain:
== domain 1 score: 21.2 bits; conditional E-value: 9.7e-08
TIGR03197 2 vavIGaGiAgaalalsLarrGvqvtllekde 32
v +IGaG+Ag+ +a+ La+ +qv+l+e ++
MMSYN1_0434 5 VKIIGAGLAGCEAAYFLANNNIQVELYEVKT 35
78*************************9874 PP
>> TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.6 0.1 1.3e-07 4e-05 3 130 .. 6 137 .. 4 157 .. 0.80
Alignments for each domain:
== domain 1 score: 20.6 bits; conditional E-value: 1.3e-07
TIGR01988 3 vIvGgGlvGlalAlaLassadlkvalveakaaek...akspafdnRvsAlsaasiellekigvwdklekkraqpiqkirvsdagskg...alefdaae 94
I+G+Gl+G A La+++ ++v l e k + k +k++ f + v + + +s++ll++ g+ ++ ++ r +++ i++ d+++ al d+++
MMSYN1_0434 6 KIIGAGLAGCEAAYFLANNN-IQVELYEVKTLIKnevQKTNNFAELVCSNTFRSQSLLNAAGILKAEMR-RLNSL-VIKIADSCKIDgddALAVDRED 100
69***************888.999999999888878888889********************9988777.77665.6899999976566699999999 PP
TIGR01988 95 vgaeaLgyvvenkvlqqaLlealqekkn..kvtllapa 130
+ +++L v++n+ + +++++++ ++ ++tl+a+
MMSYN1_0434 101 F-SKKLTEVIKNHPNITIIEQNVSHIDDenDLTLIATG 137
9.999999999998888887777766554455555544 PP
>> TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.2 0.0 1.8e-06 0.00057 1 29 [. 5 33 .. 5 37 .. 0.94
Alignments for each domain:
== domain 1 score: 17.2 bits; conditional E-value: 1.8e-06
TIGR03467 1 vvvvGgGlAGLaAAveLaraGvrvtllEa 29
v ++G+GlAG+ AA La++ ++v+l+E
MMSYN1_0434 5 VKIIGAGLAGCEAAYFLANNNIQVELYEV 33
78*************************96 PP
>> TIGR02732 zeta_caro_desat: 9,9'-di-cis-zeta-carotene desaturase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.0 6.4e-06 0.002 1 38 [. 4 41 .. 4 49 .. 0.92
2 ? -1.5 0.0 0.67 2.1e+02 397 459 .. 288 348 .. 282 357 .. 0.79
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 6.4e-06
TIGR02732 1 kvaivgaglaglatavelvdaghevelyesrsflggkv 38
kv i+gaglag +a l+++ +velye ++++ v
MMSYN1_0434 4 KVKIIGAGLAGCEAAYFLANNNIQVELYEVKTLIKNEV 41
799****************************9997766 PP
== domain 2 score: -1.5 bits; conditional E-value: 0.67
TIGR02732 397 kqvkelfpsskelkllwssvvklaqslyreapgmdlfrpdqktpianfflagsytk.qdyidsm 459
k+v + +p ++ k++ + v++ + y ++p + f+ q +n f+ag t + yi+s
MMSYN1_0434 288 KRVFQTIPGLQKAKIVRYGVMH--KNYYINSPKILNFKL-QVMRKKNVFFAGQITGvEGYIESA 348
6777888888888999998864..788999999999986.667779999999999625688885 PP
>> TIGR00315 cdhB: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.3 0.0 0.11 34 31 59 .. 133 160 .. 107 208 .. 0.79
2 ? 8.9 0.2 0.001 0.32 105 161 .. 375 435 .. 341 436 .. 0.86
Alignments for each domain:
== domain 1 score: 2.3 bits; conditional E-value: 0.11
TIGR00315 31 llvvGedlkkdellelvvkliekfdlkvv 59
l+ +G+ l+ +el+e +++li k +l +
MMSYN1_0434 133 LIATGP-LTTNELKEDIQRLIGKQKLFFM 160
444555.556***********99766554 PP
== domain 2 score: 8.9 bits; conditional E-value: 0.001
TIGR00315 105 lflGiiyYylsqalsslkhfa.kiktlaidkyyqpnad.lsfpnls..deeylklLeklla 161
++ ++ Y++ + slk + ++ l ++ yq++ + +sf n + eey+k L+++l+
MMSYN1_0434 375 ILGALTNYITNSKIYSLKPMKcNLGILEQENKYQSDDKfYSFNNSKnsLEEYIKQLNQILD 435
55556789999999*****999************998747****9864577********97 PP
>> TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.1 0.0 0.00078 0.25 2 32 .. 4 34 .. 2 66 .. 0.81
2 ? -2.2 0.1 1.1 3.4e+02 180 214 .. 103 136 .. 94 148 .. 0.66
3 ? 1.5 0.0 0.078 25 266 299 .. 330 361 .. 292 362 .. 0.88
Alignments for each domain:
== domain 1 score: 8.1 bits; conditional E-value: 0.00078
TIGR01292 2 dviiiGaGpaGltaaiYaaranlktlliegk 32
+v iiGaG aG+ aa + a n+++ l+e k
MMSYN1_0434 4 KVKIIGAGLAGCEAAYFLANNNIQVELYEVK 34
6789999999999999999999988777754 PP
== domain 2 score: -2.2 bits; conditional E-value: 1.1
TIGR01292 180 killerlkknekievllnstveeikGdekvesvki 214
k l+e +k++++i+++ +++v++i+ ++ ++ +
MMSYN1_0434 103 KKLTEVIKNHPNITII-EQNVSHIDDENDLTLIAT 136
5667777888888765.556777777777666554 PP
== domain 3 score: 1.5 bits; conditional E-value: 0.078
TIGR01292 266 eGvfaaGDvrdkslrQvvtaagdGaiAalsveky 299
+ vf aG ++ ++ + +a++G+ Aa+++ +
MMSYN1_0434 330 KNVFFAGQITG--VEGYIESASSGIWAAINILAF 361
56999**9998..999************999776 PP
>> TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.3 7.1e-05 0.023 2 82 .. 5 87 .. 4 150 .. 0.63
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 7.1e-05
TIGR01984 2 viivGgglvGlslAlaLsrksklkialieaksa.eaa.kssfdarslals..agskqileklgiweklekeatpikdihvsdrga 82
v i+G+gl+G A L+++ ++++l e k++ +++ +++++ l s s+ +l++ gi ++ e + + i++ d +
MMSYN1_0434 5 VKIIGAGLAGCEAAYFLANNN-IQVELYEVKTLiKNEvQKTNNFAELVCSntFRSQSLLNAAGILKA-EMRRLNSLVIKIADSCK 87
77******************9.*******87651555777776666655511578899999998776.44444444455555533 PP
>> TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.2 0.0 7.5e-05 0.024 2 34 .. 3 35 .. 2 43 .. 0.92
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 7.5e-05
TIGR02733 2 ksvvviGaGiaGltaaallakrGlevtlleaaa 34
k+v +iGaG+aG aa +la++ ++v+l+e ++
MMSYN1_0434 3 KKVKIIGAGLAGCEAAYFLANNNIQVELYEVKT 35
6899**************************876 PP
>> TIGR00292 TIGR00292: thiazole biosynthesis enzyme
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.8 0.0 7.8e-05 0.025 22 54 .. 3 35 .. 1 101 [. 0.82
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 7.8e-05
TIGR00292 22 sDviivGaGpsGLtaayylakeglkvvvlerkl 54
v i+GaG +G aay+la++ ++v + e k
MMSYN1_0434 3 KKVKIIGAGLAGCEAAYFLANNNIQVELYEVKT 35
6799**********************9999775 PP
>> TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.2 0.0 0.00017 0.054 4 30 .. 6 32 .. 4 40 .. 0.86
2 ? -4.1 0.0 3.7 1.2e+03 12 28 .. 224 240 .. 223 242 .. 0.84
Alignments for each domain:
== domain 1 score: 10.2 bits; conditional E-value: 0.00017
TIGR01377 4 ivvGaGvmGsaaayqLakrgkkvLLle 30
++GaG G+ aay La ++ +v L e
MMSYN1_0434 6 KIIGAGLAGCEAAYFLANNNIQVELYE 32
58***************9998887765 PP
== domain 2 score: -4.1 bits; conditional E-value: 3.7
TIGR01377 12 GsaaayqLakrgkkvLL 28
G+ qLak +kk+LL
MMSYN1_0434 224 GCQPIEQLAKTSKKLLL 240
7777789*******998 PP
>> TIGR02352 thiamin_ThiO: glycine oxidase ThiO
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.6 0.0 0.00031 0.1 1 30 [. 5 34 .. 5 44 .. 0.90
Alignments for each domain:
== domain 1 score: 9.6 bits; conditional E-value: 0.00031
TIGR02352 1 vlviGgGviGlsvAveLakrghkvtllekd 30
v +iG+G+ G A+ La+++ +v+l e +
MMSYN1_0434 5 VKIIGAGLAGCEAAYFLANNNIQVELYEVK 34
569***********************9876 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (438 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 276 (0.0614973); expected 89.8 (0.02)
Passed bias filter: 174 (0.0387701); expected 89.8 (0.02)
Passed Vit filter: 55 (0.0122549); expected 4.5 (0.001)
Passed Fwd filter: 14 (0.00311943); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 14 [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.23
# Mc/sec: 2734.73
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0434 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0435 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0435.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0435/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0435 [L=309]
Description: manA: mannose-6-phosphate isomerase, class I 5=Equivalog Carbon source transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-42 143.2 0.6 1.4e-21 75.0 0.2 2.0 2 TIGR00218 manA: mannose-6-phosphate isomerase, class I
Domain annotation for each model (and alignments):
>> TIGR00218 manA: mannose-6-phosphate isomerase, class I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 68.1 0.0 3.9e-23 1.7e-19 6 109 .. 5 107 .. 1 108 [. 0.84
2 ! 75.0 0.2 3.1e-25 1.4e-21 150 358 .. 106 303 .. 102 304 .. 0.80
Alignments for each domain:
== domain 1 score: 68.1 bits; conditional E-value: 3.9e-23
TIGR00218 6 rvqknlkerdWGkgtaladllgysipskq.taElWag.aHkkgsSkvqng...kkvsLrdliekhksellGkaeadrfelPlLvkvLsaekplsiqvH 98
+++ + +++WG g+ l++ +g+ i +q ++E W++ aH++g S+v ++ sL++l+e+hk +l+ + ++ +PlLvk++ a ls+qvH
MMSYN1_0435 5 KLKPYFSKKIWG-GNRLKE-FGFDIKDNQnIGEAWVIsAHENGMSYVISDdqyNNLSLKELFENHK-DLFNNYKGC---YPLLVKIITASDYLSVQVH 96
444455699***.******.7777766655*****************995578899**********.999887744...6****************** PP
TIGR00218 99 Pdkalakigya 109
Pd + a ++
MMSYN1_0435 97 PDDNYALSHHN 107
**877776665 PP
== domain 2 score: 75.0 bits; conditional E-value: 3.1e-25
TIGR00218 150 aerlgkteawviiasdekikeaaeilkealknskeelkekiqrliypedvglfkgllLnrvklkpgeaiyvrsgtvHAy.kggdvlEvmanSdnvvra 246
++lgk e+w++i+ ++ +ae+++++++++k+el ++ ++ +++ +lL++vk+kp +++yv +g+vHA+ ++++ E++ Sd ++r+
MMSYN1_0435 106 HNQLGKPESWYVIDANK----DAELIYGHTAKNKKELIDLV------NQ-NKWD-QLLKKVKVKPNDFLYVAPGKVHAIsPNLVIYELQRSSDITYRF 191
5679*************....********************......66.79**.************************8889999************ PP
TIGR00218 247 gltd.........kyldvkklvevltveekpeeklkeqkqkegaevlflvpieefavlktdlsekaelksqdsa..lillvleGdglilsgekklklk 333
++++ + ld+ +++e ++ ++ + ++ +++f+++ + ++ e++ ++ l l +++G+g+i + +
MMSYN1_0435 192 YDYNridkttnkpRPLDIFNSIESTITPDINDHIIHNA-------NNKVFSSDYFSLYVLECDDLKEFEVDEKCdwLQLTIISGSGYIN----DMYFT 278
***96664444444444444444444443333333332.......23456899*********99997777665411667899****995....57899 PP
TIGR00218 334 kGesfliaakleevtiegedealvs 358
kGes++ + ++++ ++g+ + ++s
MMSYN1_0435 279 KGESAITINGIDKLIVKGKIKIIIS 303
******************9988886 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (309 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 166 (0.0369875); expected 89.8 (0.02)
Passed bias filter: 98 (0.021836); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 2113.03
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0435 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0437 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0437.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0437/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0437 [L=326]
Description: putative 3'-5' exoribonuclease YhaM 2=Generic RNA metabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.5e-05 21.1 0.2 0.0005 17.7 0.2 2.1 1 TIGR03760 ICE_TraI_Pfluor: integrating conjugative element r
7.4e-05 20.5 0.0 0.00014 19.6 0.0 1.6 1 TIGR00277 HDIG: HDIG domain
0.0063 14.2 0.0 0.015 13.1 0.0 1.6 1 TIGR00295 TIGR00295: TIGR00295 family protein
------ inclusion threshold ------
0.016 13.2 0.5 0.061 11.3 0.1 2.2 3 TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD
Domain annotation for each model (and alignments):
>> TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.7 0.2 4.5e-07 0.0005 18 120 .. 115 205 .. 110 218 .. 0.85
Alignments for each domain:
== domain 1 score: 17.7 bits; conditional E-value: 4.5e-07
TIGR03760 18 rqelLqqlwensslskavyeklylapleelvelvQqlPaseshhhaelGGlvdhtlevvaaavrlskgylLpegaapeeqaaqsdaWnaaviyaaLlh 115
++++L+ + s++++ y+++ l+ +e++ + +Pa+ s hh + Gl h +v+ ++l+++y + W +i +a+lh
MMSYN1_0437 115 KTSYLELISLLNSINNQTYKTITLNLIEKYKKEFLTFPAAMSIHHNVTSGLFWHSYTLVKNVLNLKENYFYAN-----------IDWDL-LICGAILH 200
56899999999*******************************************************9998655...........34654.34566666 PP
TIGR03760 116 dlgkl 120
d+gk+
MMSYN1_0437 201 DIGKV 205
66666 PP
>> TIGR00277 HDIG: HDIG domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.6 0.0 1.3e-07 0.00014 4 46 .. 164 209 .. 161 260 .. 0.74
Alignments for each domain:
== domain 1 score: 19.6 bits; conditional E-value: 1.3e-07
TIGR00277 4 gvleHslevaklaealaeelg...advelarrgaLlHDIGKaktre 46
g++ Hs ++ k ++l e++ d +l++ ga+lHDIGK ++
MMSYN1_0437 164 GLFWHSYTLVKNVLNLKENYFyanIDWDLLICGAILHDIGKVIEIS 209
6777888888888888884433349****************98766 PP
>> TIGR00295 TIGR00295: TIGR00295 family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.1 0.0 1.3e-05 0.015 16 57 .. 167 206 .. 154 220 .. 0.82
Alignments for each domain:
== domain 1 score: 13.1 bits; conditional E-value: 1.3e-05
TIGR00295 16 ehclavakvalelaeeikkkgyevdvelvekGallhdiGrar 57
h+ ++ k l+l e+ ++d +l+ Ga+lhdiG+ +
MMSYN1_0437 167 WHSYTLVKNVLNLKENYF--YANIDWDLLICGAILHDIGKVI 206
588888888888888877..568****************986 PP
>> TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.4 0.0 0.87 9.8e+02 2 33 .. 10 52 .. 9 53 .. 0.78
2 ? 11.3 0.1 5.4e-05 0.061 3 45 .. 167 205 .. 152 208 .. 0.83
3 ? -2.3 0.0 0.86 9.6e+02 97 97 .. 261 261 .. 221 318 .. 0.58
Alignments for each domain:
== domain 1 score: -2.4 bits; conditional E-value: 0.87
TIGR01596 2 keHlldvaavae.........llknlreklaekig..elrell 33
++Hl d++ + e ++ l +la+++g e+r+++
MMSYN1_0437 10 EDHLIDTILRIErvivstgssGNNYLILHLADSTGriEARKWV 52
6899999999998888888887788888888888877777776 PP
== domain 2 score: 11.3 bits; conditional E-value: 5.4e-05
TIGR01596 3 eHlldvaavaellknlreklaekigelrellklaallHDlGKa 45
+H+ ++ nl+e+++ + ++ll a+lHD+GK+
MMSYN1_0437 167 WHSYTLVKNVL---NLKENYFYANI-DWDLLICGAILHDIGKV 205
56666666666...57778888888.9***************8 PP
== domain 3 score: -2.3 bits; conditional E-value: 0.86
TIGR01596 97 i 97
i
MMSYN1_0437 261 I 261
2 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (326 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 253 (0.0563725); expected 89.8 (0.02)
Passed bias filter: 96 (0.0213904); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 2127.95
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0437 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0438 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0438.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0438/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0438 [L=132]
Description: Histidine triad (HIT) hydrolase-like protein 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (132 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 155 (0.0345365); expected 89.8 (0.02)
Passed bias filter: 96 (0.0213904); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 947.79
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0438 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0439 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0439.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0439/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0439 [L=718]
Description: lipoprotein, putative 1=Unknown Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (718 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 304 (0.0677362); expected 89.8 (0.02)
Passed bias filter: 76 (0.016934); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 3965.69
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0439 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0440 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0440.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0440/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0440 [L=978]
Description: lipoprotein, putative 1=Unknown Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (978 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 284 (0.0632799); expected 89.8 (0.02)
Passed bias filter: 90 (0.0200535); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.22
# Mc/sec: 6383.86
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0440 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0441 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0441.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0441/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0441 [L=412]
Description: iscS 3=Putative tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.2e-119 395.9 1.5 4.8e-119 395.7 1.5 1.0 1 TIGR01979 sufS: cysteine desulfurase, SufS family
4.2e-94 313.9 0.0 5.5e-94 313.5 0.0 1.0 1 TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subu
1.9e-69 232.4 6.7 2.2e-69 232.3 6.7 1.0 1 TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protei
1.2e-57 193.9 0.0 1.2e-56 190.7 0.0 2.1 1 TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protei
7.6e-46 154.5 1.8 1.1e-44 150.7 1.8 2.4 1 TIGR03402 FeS_nifS: cysteine desulfurase NifS
4.3e-44 149.2 1.2 2.4e-43 146.8 1.2 1.8 1 TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
8.4e-41 138.2 3.2 4.2e-40 135.9 3.2 2.0 1 TIGR02006 IscS: cysteine desulfurase IscS
5.8e-36 122.1 6.3 1e-33 114.7 3.2 2.4 2 TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family
2.1e-11 41.2 0.0 2.8e-11 40.8 0.0 1.2 1 TIGR04343 egtE_PLP_lyase: ergothioneine biosynthesis PLP-dep
3.4e-10 37.8 0.2 5.6e-10 37.1 0.2 1.2 1 TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferas
8.1e-06 23.1 0.2 1.2e-05 22.6 0.2 1.2 1 TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate
3.4e-05 20.8 0.8 4.7e-05 20.3 0.8 1.1 1 TIGR01264 tyr_amTase_E: tyrosine aminotransferase
0.00016 18.8 0.0 0.00022 18.3 0.0 1.2 1 TIGR02539 SepCysS: O-phospho-L-seryl-tRNA:Cys-tRNA synthase
0.00018 18.2 1.3 0.00026 17.8 0.4 1.6 2 TIGR01329 cysta_beta_ly_E: cystathionine beta-lyase
0.00068 16.7 0.7 0.0013 15.7 0.7 1.4 1 TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine family amin
0.00082 16.3 0.6 0.00082 16.3 0.6 2.0 3 TIGR01141 hisC: histidinol-phosphate transaminase
0.002 15.0 0.2 0.0034 14.3 0.2 1.4 1 TIGR01328 met_gam_lyase: methionine gamma-lyase
0.0021 14.8 0.4 0.0029 14.3 0.4 1.2 1 TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase
0.0035 14.2 0.0 0.005 13.7 0.0 1.1 1 TIGR03947 viomycin_VioD: capreomycidine synthase
0.0037 14.0 0.9 0.0066 13.1 0.9 1.4 1 TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypro
0.0063 13.4 0.3 0.0092 12.9 0.3 1.2 1 TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
Domain annotation for each model (and alignments):
>> TIGR01979 sufS: cysteine desulfurase, SufS family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 395.7 1.5 2.3e-121 4.8e-119 1 402 [. 6 408 .. 6 409 .. 0.93
Alignments for each domain:
== domain 1 score: 395.7 bits; conditional E-value: 2.3e-121
TIGR01979 1 kkiredFPilkrkvngkplvYLDsaatsqkPkaVidaveeyyeksnanvhRgvhtlseeateayeeaRekvakfinAksaeeivftkgateslNlvaa 98
+ki+++FP+lk++ n l+Y+D++at+ kP++Vi+a ++y ++ +n h + +++ ++ e ++Re v++finA++++ei+ft+g+t+s+N++a+
MMSYN1_0441 6 EKIKKQFPLLKKHPN---LIYFDNGATTLKPNSVINAQTNYLKNISTNPHSSDYKIGYQSLEILSNTRELVKNFINANHTSEIIFTSGTTQSINMIAK 100
589*********997...******************************************************************************** PP
TIGR01979 99 slgesslkegdeivvseleHHanivpwqllakrkgaklkvieldedgtldleeleelltektklvaithvsNvlGtvnpveeiiklah..evgalvlv 194
l + ++++dei+++ leH +n+vpw l ++++a +k +el++d +d+++l++l+t ktk+++++h+sN++G +n+v++ii++++ +++++++v
MMSYN1_0441 101 GLIN-LINQDDEILITSLEHSSNLVPWIWLKQKTNAVIKNLELTNDFGIDINKLDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRsiNQNVIIVV 197
9875.6889******************************************************************************9556678999* PP
TIGR01979 195 DgaqavphlkvdvkeldvDflvfsgHKllgptGiGvLygkkelLeklpPfegGGemieevs..leestyaelPlkfEaGtpniagvvglgaaieylek 290
D aq++ h kvdvk++dvDf++fs+HK++gp+G+GvLygk +lL+kl+P++ GG ++s +++ t ++lP k+EaGt ni+++ g+++aie++ k
MMSYN1_0441 198 DVAQSIAHFKVDVKDWDVDFIAFSAHKMYGPFGVGVLYGKYQLLDKLEPLNLGGGSSLTISrdFTSYTLKSLPEKLEAGTLNISNIYGFKKAIEFILK 295
**************************************************998865555541155677799*************************** PP
TIGR01979 291 iglekieakekeltayalerleeidglriygpkeeeeragiisfnvegvhahDvatlldee.GiavRsGhhCaqPlmkrldveataRaslalYnteed 387
ig+++i +e++l++y+ ++++ + + + + ++ ++ fnv+++ a+D++++ld + i+ RsG hC + l +++++++ +R+s+a+Ynt+++
MMSYN1_0441 296 IGINNICLYETKLKQYTRQQIKANHLENKITFYNLNNDSPLLLFNVNQINAQDISSFLDVKyNITSRSGAHCVRRLEDVIHIKSALRISFAIYNTTDE 393
********************987543333333344567899******************7659*********************************** PP
TIGR01979 388 vdalvealkkvrklf 402
+d+l++alk++ k++
MMSYN1_0441 394 IDKLIDALKNTDKFL 408
***********9987 PP
>> TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 313.5 0.0 2.6e-96 5.5e-94 4 393 .. 6 405 .. 4 409 .. 0.92
Alignments for each domain:
== domain 1 score: 313.5 bits; conditional E-value: 2.6e-96
TIGR03392 4 aqfrrqfpalqd..ktvyldsaatalkpqavieatqdfyrlesatvhrsqykealsltaryeaareqvaellnasdaenivwtrGtteslnlvaqsya 99
+++++qfp l++ + +y+d at+lkp++vi+a ++ ++ s++ h s+yk + + ++re v +++na+++ +i++t Gtt+s+n++a+ +
MMSYN1_0441 6 EKIKKQFPLLKKhpNLIYFDNGATTLKPNSVINAQTNYLKNISTNPHSSDYKIGYQSLEILSNTRELVKNFINANHTSEIIFTSGTTQSINMIAKGLI 103
57899*****985678************************************99999999***********************************998 PP
TIGR03392 100 rprlqpedeiivseaehhanlipwlmvaeqtGakvvklplgadklpdiellpelltkktrllalsqmsnvtGGapdlariialahk..agavvvvdGa 195
++ +dei+++ eh +nl+pw+ + ++t a + l l++d di++l +l+t+kt++++++ +sn tG + d+++ii+ +++ +++++vvd a
MMSYN1_0441 104 N-LINQDDEILITSLEHSSNLVPWIWLKQKTNAVIKNLELTNDFGIDINKLDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRSinQNVIIVVDVA 200
6.57779**************************************************************************99886226799****** PP
TIGR03392 196 qGvvhlpadvqaldidfyafsghklygptGiGvlyGktelleamppwq.GGGkmls.evsfdgfipqavpfrfeaGtpniaGviGlsaalewlkdldl 291
q + h+++dv+++d+df afs+hk+ygp G+GvlyGk +ll+++ p + GGG l+ + f ++ ++ p ++eaGt ni+ + G++ a+e++ ++ +
MMSYN1_0441 201 QSIAHFKVDVKDWDVDFIAFSAHKMYGPFGVGVLYGKYQLLDKLEPLNlGGGSSLTiSRDFTSYTLKSLPEKLEAGTLNISNIYGFKKAIEFILKIGI 298
********************************************9974377877762568************************************** PP
TIGR03392 292 ekaeaysvsladlaeeklak..lpGfrsfr..iaessllafdfadvhhsdlvall.aesgialraGqhcaqpllaalGvsGtlrasfapyntkqdvda 384
++ y ++l +++++++ + l ++f ++s+ll f+++++ +d+ + l +++i+ r+G hc + l + + ++ +lr sfa ynt++++d+
MMSYN1_0441 299 NNICLYETKLKQYTRQQIKAnhLENKITFYnlNNDSPLLLFNVNQINAQDISSFLdVKYNITSRSGAHCVRRLEDVIHIKSALRISFAIYNTTDEIDK 396
**************9987541244444443124789****************9984689*************************************** PP
TIGR03392 385 lveavkkal 393
l++a+k++
MMSYN1_0441 397 LIDALKNTD 405
*****9875 PP
>> TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 232.3 6.7 1e-71 2.2e-69 1 375 [. 22 403 .. 22 404 .. 0.91
Alignments for each domain:
== domain 1 score: 232.3 bits; conditional E-value: 1e-71
TIGR01977 1 iYldnAattypKpdeviealadllkeeggsagrgserlalrasreveetReelaklfnveekakvvFtnnattalNialkGilk...egkhvittslE 95
iY+dn att Kp++vi+a +++lk+ ++++ + ++ ++ +++++tRe++++++n++++ +++Ft+ +t+++N++ kG+++ +++++++tslE
MMSYN1_0441 22 IYFDNGATTL-KPNSVINAQTNYLKNISTNPHSSDYKIGYQSLEILSNTRELVKNFINANHTSEIIFTSGTTQSINMIAKGLINlinQDDEILITSLE 118
7********6.9*********************************************************************6555559********** PP
TIGR01977 96 HnaVlRpleklkeelgvevtivkaeeeglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelak..ekgilflvDaaqtaGvleidveklaid 191
H + l p lk++++ ++ ++ +++ +d++k+ + i+ +tk+i +h SN tG i ++++i + + +++++++vD aq++ ++dv+ ++d
MMSYN1_0441 119 HSSNLVPWIWLKQKTNAVIKNLELTNDFGIDINKLDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRsiNQNVIIVVDVAQSIAHFKVDVKDWDVD 216
****************************************************************9554423789************************ PP
TIGR01977 192 llaftGHKgLlgpqGiggllikekik..lkpllsGGtGsn..Sasle..qpselPdrfeaGtlNtlgiagLkagikfiekigianikkkelkltekll 283
++af+ HK ++gp G+g+l+ k ++ l+pl GG s S +++ + ++lP+++eaGtlN+ i g k++i+fi kigi+ni e+kl+++
MMSYN1_0441 217 FIAFSAHK-MYGPFGVGVLYGKYQLLdkLEPLNLGGGSSLtiSRDFTsyTLKSLPEKLEAGTLNISNIYGFKKAIEFILKIGINNICLYETKLKQYTR 313
*******9.7**********99997556*******987752244444114579***********************************9999999998 PP
TIGR01977 284 egLkeikkvkiyGakdaakrvgvvSltlegldseevaaildekfdivvRaGlHCaPlaHktigtlatGtiRlslgyfnteeeieklvealke 375
+++k + + + + ++ +++ +++++++ +++++ ld k++i+ R+G HC +i ++ ++R+s++ +nt +ei+kl++alk+
MMSYN1_0441 314 QQIKANHLENKITFYNLNNDSPLLLFNVNQINAQDISSFLDVKYNITSRSGAHCVRRLEDVIHIKS--ALRISFAIYNTTDEIDKLIDALKN 403
888854332333335699999**********************************99999998765..6********************985 PP
>> TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 190.7 0.0 5.5e-59 1.2e-56 3 401 .] 5 401 .. 4 401 .. 0.86
Alignments for each domain:
== domain 1 score: 190.7 bits; conditional E-value: 5.5e-59
TIGR01976 3 veavRtqfPaLasgedvvflDnpaGtqvPqsvldavsaaltrsnan.rggayessrkadqvvddAreavadllnaespeevvlGanatslafllsral 99
e++++qfP L++ +++++Dn a t+ P+sv++a +++l++ n ++ y+ ++ +++ + re v +++na+ e+++ t+ + ++++l
MMSYN1_0441 5 FEKIKKQFPLLKKHPNLIYFDNGATTLKPNSVINAQTNYLKNISTNpHSSDYKIGYQSLEILSNTRELVKNFINANHTSEIIFTSGTTQSINMIAKGL 102
589**************************************99988356678888******************************************* PP
TIGR01976 100 artlgpgdEvivtrldheaNispWlqaaedagakvkwaevdeadgeleeadlaallsdrTRLVAvtaasnllGsivdlaaltelvhaaGa..lvvvDa 195
+ +++ dE+++t+l+h +N pW +++++ a++k +e+ + d ++ ++l l+ ++T+++ sn++G i+d++ +++ +++ ++vvD
MMSYN1_0441 103 INLINQDDEILITSLEHSSNLVPWIWLKQKTNAVIKNLELTN-DFGIDINKLDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRSINQnvIIVVDV 199
****************************************98.9*****************************************9876511679*** PP
TIGR01976 196 vhyaphaliDvqalgaDllvcsaykffgPh.lGilvvraellkslkpskl.............efsedegperlElGtlqyellaGvvaavdylaelg 279
+ +h +Dv++++ D++++sa+k++gP +G+l+++ +ll++l+p l + + + pe+lE+Gtl++ ++ G+ a++++ ++g
MMSYN1_0441 200 AQSIAHFKVDVKDWDVDFIAFSAHKMYGPFgVGVLYGKYQLLDKLEPLNLgggssltisrdftSYTLKSLPEKLEAGTLNISNIYGFKKAIEFILKIG 297
*****************************55************999865322222211111112334578**************************** PP
TIGR01976 280 aseegsrRerlvasfeaieayeerlaerllagLsdlp...lvtvyglqdekleervptvaftvaklapervvkrla.eqnvlvaaghfyavellrqLg 373
++i ye +l+++ +++++ +t y l++ p ++f+v++++++++ l + n++ ++g +l + +
MMSYN1_0441 298 I--------------NNICLYETKLKQYTRQQIKANHlenKITFYN-----LNNDSPLLLFNVNQINAQDISSFLDvKYNITSRSGAHCVRRLEDVIH 376
3..............3345566666666666665544000355555.....7999*******************973568999999666556666666 PP
TIGR01976 374 leaeeGvvrvglahYntaeevdklleal 401
++ ++r+++a Ynt++e+dkl+ al
MMSYN1_0441 377 IK---SALRISFAIYNTTDEIDKLIDAL 401
66...8*******************997 PP
>> TIGR03402 FeS_nifS: cysteine desulfurase NifS
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 150.7 1.8 5.1e-47 1.1e-44 1 367 [. 22 402 .. 22 407 .. 0.76
Alignments for each domain:
== domain 1 score: 150.7 bits; conditional E-value: 5.1e-47
TIGR03402 1 vYlDnnattkvdpevleamlpyltekfGnp.sslhsfgkevkkaveeaRekvakllgae.eeeiiftsggtesdntaiksalaakkekkhiittaveh 96
+Y+Dn att ++v++a yl++ np ss +++g ++ + ++++Re v+++++a+ ++eiiftsg t s n+ k+ ++ ++ ++i++t++eh
MMSYN1_0441 22 IYFDNGATTLKPNSVINAQTNYLKNISTNPhSSDYKIGYQSLEILSNTRELVKNFINANhTSEIIFTSGTTQSINMIAKGLINLINQDDEILITSLEH 119
8****************************96779*************************99************************************* PP
TIGR03402 97 pavlslceyLek.egykvtylpvdeeGrldleelkkaltdetilvsvmyanneiGtifpieeiaklake..kgvlfhtDavqavGkvpidlkeleidl 191
++ l +L++ ++ +++l+ ++ +d+++l + +t +t ++s+ + n +G i+ +++i + +++ ++v+ +D q++ + ++d+k+ ++d+
MMSYN1_0441 120 SSNLVPWIWLKQkTNAVIKNLELTNDFGIDINKLDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRSinQNVIIVVDVAQSIAHFKVDVKDWDVDF 217
**********9845677899******************************************99887754489************************* PP
TIGR03402 192 lslsghklhaPkgvgalyirkgv..klepllrGGhqe................rgrRagtenvpgivglgkaielaaee.leeenekvkalRdrlekg 270
++ s+hk+++P gvg+ly + + klepl GG+ ++ agt n+++i g+ kaie+ + +++ ++l++ ++
MMSYN1_0441 218 IAFSAHKMYGPFGVGVLYGKYQLldKLEPLNLGGGSSltisrdftsytlkslpEKLEAGTLNISNIYGFKKAIEFILKIgINNICLYETKLKQYTRQQ 315
******************998865589**988876542211112222221121344678888888888888888764321232222333333333333 PP
TIGR03402 271 llekipkarvnGdkekRlpntvnisfefiegeailllld.kegiaassGsaCtsgslepshvlramgvpaevahGslRlslsrenteedvdkvlevlp 367
+ ++ + +++ + + + + + ++ i++ i +ld k++i++ sG+ C + h + +lR+s++ +nt++++dk++++l+
MMSYN1_0441 316 IKANHLENKITFYNLNNDSPLLLFNVNQINAQDISSFLDvKYNITSRSGAHCVRRLEDVIH-----------IKSALRISFAIYNTTDEIDKLIDALK 402
3333333333322222222333344555666666666663345666666666554444334...........46789999999999999999999886 PP
>> TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 146.8 1.2 1.1e-45 2.4e-43 1 336 [. 23 379 .. 23 391 .. 0.80
Alignments for each domain:
== domain 1 score: 146.8 bits; conditional E-value: 1.1e-45
TIGR03235 1 YLDvnattpvdpevaevvrpflleefGnassrthefgakakkavekarkqvaealgad.keeviftsgatesnnlallGlaeygeqkgkkhiitsaie 97
Y D+ att + v+++ ++l ++ n+ s ++ g ++ + + r+ v + ++a+ ++e+iftsg+t s n++ +Gl + +q+ + i+ + +e
MMSYN1_0441 23 YFDNGATTLKPNSVINAQTNYLKNISTNPHSSDYKIGYQSLEILSNTRELVKNFINANhTSEIIFTSGTTQSINMIAKGLINLINQD--DEILITSLE 118
99******9999*******************************************996379**********************9999..5788888** PP
TIGR03235 98 hkavlepikfLeen.GftvtylevdesGridveelkeairedtllvslmavnnevGslqpireiaevlee..revflhvDaaqvvgkiavdlsakrid 192
h++ l p +L+++ ++ le ++ id+++l + i+++t ++s + n +G ++++++i + +++ ++v + vD+aq++++ +vd+++ ++d
MMSYN1_0441 119 HSSNLVPWIWLKQKtNAVIKNLELTNDFGIDINKLDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRSinQNVIIVVDVAQSIAHFKVDVKDWDVD 216
************995666799*******************************************999885337899********************** PP
TIGR03235 193 lisvsghkiygPkGiGalvirkrrkkkaplkPllfGGGqe................rgLrpGtLpvalivGlgeaaeiarknaeake.kklralknkl 273
+i+ s+hk+ygP G+G+l+ + + +l+Pl GGG +L +GtL++++i G+++a+e + k +++ +lk+
MMSYN1_0441 217 FIAFSAHKMYGPFGVGVLYGKYQ--LLDKLEPLNLGGGSSltisrdftsytlkslpEKLEAGTLNISNIYGFKKAIEFILKIGINNIcLYETKLKQYT 312
*******************9885..55579********75333322333333222246889**************99766654444312333444444 PP
TIGR03235 274 ldaLkt....levklngdpaekipnvlnlsidgvnsealivaLkavvav..stgsaCssskyepshvLk 336
++++k +++++ + ++ +p l + ++++n++ + L + + +g+ C + h+
MMSYN1_0441 313 RQQIKAnhleNKITFYNL-NNDSP-LLLFNVNQINAQDISSFLDVKYNItsRSGAHCVRRLEDVIHIKS 379
444444222366666665.44555.56689999999877666654444400455556655555555555 PP
>> TIGR02006 IscS: cysteine desulfurase IscS
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 135.9 3.2 1.9e-42 4.2e-40 5 372 .. 22 402 .. 17 409 .. 0.74
Alignments for each domain:
== domain 1 score: 135.9 bits; conditional E-value: 1.9e-42
TIGR02006 5 iyldyaattpvdkrvaekmleyltvkfGnpasrshkfGweaeeavenarkevaeligad.sreivftsGatesdnlaikGvakfykskgkhiitskte 101
iy+d att + v+++ ++yl np+s +k G+++ e++ n+r+ v + i+a+ + ei+ftsG+t+s n++ kG+ ++ ++ ++ +its e
MMSYN1_0441 22 IYFDNGATTLKPNSVINAQTNYLKNISTNPHSSDYKIGYQSLEILSNTRELVKNFINANhTSEIIFTSGTTQSINMIAKGLINLINQDDEILITS-LE 118
9********************************************************97367**********************99988888876.79 PP
TIGR02006 102 hkavldtcrelereGfe.vtylevkedGlidleelkaairddtilvsvmavnneiGviqdiaaigelcre..rkvlfhvdaaqsvGkvpidleelkvd 196
h + l l+++ + le+ +d id+++l++ i+ +t ++s ++ n +G i+d+++i + +r+ ++v++ vd+aqs+ ++d+++ vd
MMSYN1_0441 119 HSSNLVPWIWLKQKTNAvIKNLELTNDFGIDINKLDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRSinQNVIIVVDVAQSIAHFKVDVKDWDVD 216
999999999998887661578******************************************99888853389************************ PP
TIGR02006 197 llslsahkiyGpkGiGalyvrrkprvrlealihGGGherGlrsGtlpthqivGlGeafriakeelakdtarvlklrdkllngies..ieevylngdle 292
++++sahk+yGp G+G ly + + +le+l GGG + s ++ + l e ++ + ++++ +++ l gi++ + e++l
MMSYN1_0441 217 FIAFSAHKMYGPFGVGVLYGKYQLLDKLEPLNLGGGSSLTI-SRDFTSYTLKSLPEKLEAGTLNISNIYGFKKAIEFILKIGINNicLYETKLKQYTR 313
************************************87554.33344444455555555555555544444444444455555553334555555555 PP
TIGR02006 293 qrvksn.l..nvsfnyveGes..lilalkdlavssGsac.....tsaslepsyvlralGlndelah..ssirftlGrftteeeidyavklvk 372
q++k n l ++f ++ +s l++ ++++ s+ +s ++ +r + +++ h s++r+++ + t +eid ++ +k
MMSYN1_0441 314 QQIKANhLenKITFYNLNNDSplLLFNVNQINAQDISSFldvkyNITSRSGAHCVR---RLEDVIHikSALRISFAIYNTTDEIDKLIDALK 402
55544322223566666665532333344443222222100000112222222222...333443333667777777777777777766655 PP
>> TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 114.7 3.2 4.7e-36 1e-33 1 228 [. 22 252 .. 22 325 .. 0.89
2 ! 8.1 0.1 0.0011 0.24 346 373 .. 378 405 .. 340 410 .. 0.90
Alignments for each domain:
== domain 1 score: 114.7 bits; conditional E-value: 4.7e-36
TIGR03403 1 vyldnnattlldpkvkelmepflkdiygnpns.lhkfgtethpaiaealdklykginardeddivitscatesnnwvlkgvyfdeilkkeknhiitte 97
+y+dn attl +v + + +lk+i np s +k g ++ ++++ + + + ina+ + +i++ts +t+s+n + kg+ +++ + ++i++t+
MMSYN1_0441 22 IYFDNGATTLKPNSVINAQTNYLKNISTNPHSsDYKIGYQSLEILSNTRELVKNFINANHTSEIIFTSGTTQSINMIAKGLIN--LIN-QDDEILITS 116
7*********9999****************76268*********************************************963..444.45789**** PP
TIGR03403 98 vehpavraacafleslgvevt.ylpvneqgvitaeqvreaitektalvsvmwannetglifpikeigelck..ekgvlfhtdavqavgkipvdvqkvk 192
eh + l++ v+ +l + ++ i+++++ + it kt ++s +n tg i+++k+i + ++ +++v++ d q++ + +vdv++ +
MMSYN1_0441 117 LEHSSNLVPWIWLKQKTNAVIkNLELTNDFGIDINKLDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRsiNQNVIIVVDVAQSIAHFKVDVKDWD 214
*********9999998887763699999999*********************************998776633689********************** PP
TIGR03403 193 vdflsfsahkfhgpkgvgalyikkgv..eltpllhgge 228
vdf++fsahk++gp gvg ly k + +l pl gg
MMSYN1_0441 215 VDFIAFSAHKMYGPFGVGVLYGKYQLldKLEPLNLGGG 252
*********************99876558999966553 PP
== domain 2 score: 8.1 bits; conditional E-value: 0.0011
TIGR03403 346 htairlslsrftteeeidyaievfkkav 373
++a+r+s++ ++t +eid+ i+ +k++
MMSYN1_0441 378 KSALRISFAIYNTTDEIDKLIDALKNTD 405
479*********************9975 PP
>> TIGR04343 egtE_PLP_lyase: ergothioneine biosynthesis PLP-dependent enzyme EgtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.8 0.0 1.3e-13 2.8e-11 54 368 .. 64 401 .. 17 403 .. 0.69
Alignments for each domain:
== domain 1 score: 40.8 bits; conditional E-value: 1.3e-13
TIGR04343 54 PvLdagraavaalvGlaa.advvfttgsnhaldlLLgsW...padsrsvavlpgeyGpnla....ilarrgfkvkeLPvdddgrldvdavaslLradk 143
L +r v++++ +++ +++ ft g++++++++ ++ ++ ++ ++ e+ +nl+ + ++++ +k+L +d +d++++++l+ + k
MMSYN1_0441 64 EILSNTRELVKNFINANHtSEIIFTSGTTQSINMIAKGLinlINQDDEILITSLEHSSNLVpwiwLKQKTNAVIKNLELTNDFGIDINKLDQLI-TPK 160
56777888888888776516899****999999876554111334489999999****99644323445778899****************999.999 PP
TIGR04343 144 ldLvhltvvashrGvvqPaaevaelcra..agvPlvvdaaqalghldca...vgadalysssrkWlaGPrGvGvLavrPelverlapvldppdw.... 232
+++ +++++ G + ++++ + r + v +vvd+aq+++h + d +++ s + GP GvGvL + +l+++l p + +
MMSYN1_0441 161 TKIISFAHISNTTGYINDVKKIIQKIRSinQNVIIVVDVAQSIAHFKVDvkdWDVD-FIAFSAHKMYGPFGVGVLYGKYQLLDKLEPLNLGGGSslti 257
*************************9962257999*********976662033334.5566777799******************9964433322333 PP
TIGR04343 233 ...eeasplav.aarlehseaniaarvGfsvavgehlaaGpaavrarLaelGaaarrvl..advkgWrvveevdePsaittLeptdgvdpeavrrsli 324
++ +l++ ++le + ni+ Gf a+ l++G +++ + l + +r+ + +++++ ++++ s + L +++++++++ + l
MMSYN1_0441 258 srdFTSYTLKSlPEKLEAGTLNISNIYGFKKAIEFILKIGINNICLYETKLKQYTRQQIkaNHLENKITFYNLNNDSPLL-LFNVNQINAQDISSFLD 354
321223344431478999999************99999999998655555555555544113455555555555555543.44556666666665555 PP
TIGR04343 325 aersivt.tavevaraPaelt..tPvLrvsPhvdatdedLealaevL 368
+ +i + ++++r +++ + +Lr+s + t++++++l ++L
MMSYN1_0441 355 VKYNITSrSGAHCVRRLEDVIhiKSALRISFAIYNTTDEIDKLIDAL 401
55555431344555555554312456666666666666666666665 PP
>> TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.1 0.2 2.6e-12 5.6e-10 47 198 .. 78 234 .. 63 246 .. 0.77
Alignments for each domain:
== domain 1 score: 37.1 bits; conditional E-value: 2.6e-12
TIGR03301 47 ddkytavllqgSGtaaveavig....slvpkegkllvlenGaYgeRlakia..eylglphtalkfseeeevdlseieelLaedpdithvavvHhEttt 138
+ ++t+ ++ +SGt+ +i+ l+ +++++l+ ++ + i + + + +l+ ++ +d++++++l++ +++i ++ H tt
MMSYN1_0441 78 NANHTSEIIFTSGTTQSINMIAkgliNLINQDDEILITSLEHSSNLVPWIWlkQKTNAVIKNLELTNDFGIDINKLDQLITPKTKIISF--AHISNTT 173
4589999999999876555554222257889999999988888888777751155556667888889999***********99999766..58899** PP
TIGR03301 139 giLnpleaiakvarshgav..livDavSslgaipidieeldvdaliasanKclegvpGlsFv 198
g +n++++i + +rs +++ ++vD s+ +d++++dvd+++ sa K g G++ +
MMSYN1_0441 174 GYINDVKKIIQKIRSINQNviIVVDVAQSIAHFKVDVKDWDVDFIAFSAHKM-YGPFGVGVL 234
**********99998766511568**************************94.455555555 PP
>> TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.6 0.2 5.4e-08 1.2e-05 52 210 .. 79 242 .. 52 256 .. 0.69
Alignments for each domain:
== domain 1 score: 22.6 bits; conditional E-value: 5.4e-08
TIGR02326 52 eeytsvllqGsGtfaveaviG....savpkdgkllvvinGayGkrlaqi..aelleipvvvveteekeatnvaevekilaadpeithvalvhsetttG 143
++ts ++ sGt +i ++ +d+++l+ + + + i + + ++++e ++ ++++++++++ + +i + h ttG
MMSYN1_0441 79 ANHTSEIIFTSGTTQSINMIAkgliNLINQDDEILITSLEHSSNLVPWIwlKQKTNAVIKNLELTNDFGIDINKLDQLITPKTKIISF--AHISNTTG 174
4577777777776543333321111456677777776655444433333103333444455566667778899999999888877555..58899*** PP
TIGR02326 144 ilnPieavakvakryGk..vlivdamssfGgieidiaeleidylissankciqGvPGfgfviakeaele 210
+n ++++++ ++ + +++vd s+ ++d+++ ++d++ sa k + G G+g + k + l+
MMSYN1_0441 175 YINDVKKIIQKIRSINQnvIIVVDVAQSIAHFKVDVKDWDVDFIAFSAHK-MYGPFGVGVLYGKYQLLD 242
******99876665544114568********************9999998.567778888777776665 PP
>> TIGR01264 tyr_amTase_E: tyrosine aminotransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.3 0.8 2.2e-07 4.7e-05 48 206 .. 38 196 .. 7 208 .. 0.67
Alignments for each domain:
== domain 1 score: 20.3 bits; conditional E-value: 2.2e-07
TIGR01264 48 ktseeavkalkesvdsgkyn.GyaptvGaleareaiaeyyankradgeleaddvvlasGcshalela...iealadaGenvlvPrPGfpl....yetl 137
+++ + +k++ +s +y+ Gy + ++re + ++ + + +++ +sG+++++++ + l ++ +++l+ + + l
MMSYN1_0441 38 NAQTNYLKNISTNPHSSDYKiGYQSLEILSNTRELVKNFIN------ANHTSEIIFTSGTTQSINMIakgLINLINQDDEILITSLEHSSnlvpWIWL 129
45555666777777777776466655555555554444444......445679************9723355678999****9865443211114445 PP
TIGR01264 138 akaldievklynlladedweidlkelesliddktkalivnnPsnPcGsvfsrkhleellalaerlklpi 206
+ ++ ++k nl +d+ id+++l++li ktk++ + sn +G + + k + + ++ +++ +++
MMSYN1_0441 130 KQKTNAVIK--NLELTNDFGIDINKLDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRSINQNVIIV 196
555555555..5555789*****************************9988766655555555444433 PP
>> TIGR02539 SepCysS: O-phospho-L-seryl-tRNA:Cys-tRNA synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.3 0.0 1e-06 0.00022 139 219 .. 153 234 .. 85 244 .. 0.83
Alignments for each domain:
== domain 1 score: 18.3 bits; conditional E-value: 1e-06
TIGR02539 139 vedesgkevalallthvdgeyGnladakkvakvcr..kkgvplllncaytvGrlpvsakevkadfivgsGhksmaasapvGvl 219
+ + +++++ ++h+ G ++d kk+ + r +++v ++++ a ++ ++v+ k+ ++dfi s hk vGvl
MMSYN1_0441 153 LDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRsiNQNVIIVVDVAQSIAHFKVDVKDWDVDFIAFSAHKMY-GPFGVGVL 234
444445567889999**************988777235789999***************************954.33334444 PP
>> TIGR01329 cysta_beta_ly_E: cystathionine beta-lyase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.8 0.4 1.2e-06 0.00026 54 173 .. 71 200 .. 20 228 .. 0.76
2 ? -2.0 0.0 1.2 2.7e+02 255 274 .. 344 363 .. 339 406 .. 0.55
Alignments for each domain:
== domain 1 score: 17.8 bits; conditional E-value: 1.2e-06
TIGR01329 54 sllakleka..eralavssGma.aldvivr....llkagdeiiagddlyGGtdrlltqlksksgvvvvhvdtt.....dlekvkavlgdlpktklvll 139
+l+ ++ +a ++++sG + ++++i + l+++ dei+ ++ + +lk+k+++v++ ++ t d++k+ + ++ pktk++ +
MMSYN1_0441 71 ELVKNFINAnhTSEIIFTSGTTqSINMIAKglinLINQDDEILITSLEHSSNLVPWIWLKQKTNAVIKNLELTndfgiDINKLDQLIT--PKTKIISF 166
44555555522345788898763566666566669999****999866665555567899*********9986333336789999999..******** PP
TIGR01329 140 esPtnPlikivdirkiaeaakalnedalvvvdnt 173
+n i d++ki++ ++++n+++ +vvd +
MMSYN1_0441 167 AHISNTTGYINDVKKIIQKIRSINQNVIIVVDVA 200
*******************************964 PP
== domain 2 score: -2.0 bits; conditional E-value: 1.2
TIGR01329 255 enavaialfletrsrvaskv 274
na+ i+ fl+ + +++s+
MMSYN1_0441 344 INAQDISSFLDVKYNITSRS 363
56666666666555554443 PP
>> TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine family aminotransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.7 0.7 6.1e-06 0.0013 68 204 .. 59 196 .. 7 207 .. 0.67
Alignments for each domain:
== domain 1 score: 15.7 bits; conditional E-value: 6.1e-06
TIGR01265 68 gYapsvGvlaareavaeylskeleakleaddvvltsGcsqaielvieala...naganiLvPrPgfpl....Yetlakalglevrkydllpekdweid 158
gY + + ++re v ++++ ++ +++ tsG++q+i+++ + l n+ ++iL+ ++ + l + ++ +++ +l +d+ id
MMSYN1_0441 59 GYQSLEILSNTRELVKNFIN-----ANHTSEIIFTSGTTQSINMIAKGLInliNQDDEILITSLEHSSnlvpWIWLKQKTNAVIKNLEL--TNDFGID 149
55555555555555555555.....2345789*************887654448999****8765543111133444555555555444..58899** PP
TIGR01265 159 ldelealaDektvalvvinPsnPcGsvfsrdH.lekvvevaeklkll 204
+++l++l+ kt+++ sn +G + + + ++k+ + ++ ++
MMSYN1_0441 150 INKLDQLITPKTKIISFAHISNTTGYINDVKKiIQKIRSINQNVIIV 196
*************************9887655145555554444333 PP
>> TIGR01141 hisC: histidinol-phosphate transaminase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.7 0.0 2.3 5e+02 188 204 .. 7 23 .. 4 25 .. 0.80
2 ! 16.3 0.6 3.8e-06 0.00082 70 182 .. 80 200 .. 31 212 .. 0.82
3 ? -2.3 0.0 1.7 3.7e+02 315 348 .. 368 403 .. 364 404 .. 0.75
Alignments for each domain:
== domain 1 score: -2.7 bits; conditional E-value: 2.3
TIGR01141 188 eeasvlellaeypnlvv 204
+ ++ ++ll+++pnl++
MMSYN1_0441 7 KIKKQFPLLKKHPNLIY 23
5567899********96 PP
== domain 2 score: 16.3 bits; conditional E-value: 3.8e-06
TIGR01141 70 veeenillgnGsdeliellir...aflepgdavlvleptysm....YevsakiagaevkevplkedgqedleavleaakekvklvflasPnnPtGnll 160
++ +i+++ G ++i+++++ +++++ d++l+++ s + + ++a +k+ +l++d+ d +++ + ++ k+k++ +a+ +n tG +
MMSYN1_0441 80 NHTSEIIFTSGTTQSINMIAKgliNLINQDDEILITSLEHSSnlvpWIWLKQKTNAVIKNLELTNDFGIDINKLDQLITPKTKIISFAHISNTTGYIN 177
456789*************98222456677999998877765222255678899999*********99****************************** PP
TIGR01141 161 kreeiekvleev.edalVVvDeA 182
+ ++i++ + + +++++VvD A
MMSYN1_0441 178 DVKKIIQKIRSInQNVIIVVDVA 200
****9999999967*******87 PP
== domain 3 score: -2.3 bits; conditional E-value: 1.7
TIGR01141 315 vRdlksaeglleeclRitvG...treenerllealke 348
vR l+ + +++ +lRi+ t +e ++l++alk+
MMSYN1_0441 368 VRRLEDVI-HIKSALRISFAiynTTDEIDKLIDALKN 403
77787775.4799999997433388899999999886 PP
>> TIGR01328 met_gam_lyase: methionine gamma-lyase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.3 0.2 1.6e-05 0.0034 85 227 .. 96 243 .. 58 259 .. 0.74
Alignments for each domain:
== domain 1 score: 14.3 bits; conditional E-value: 1.6e-05
TIGR01328 85 gaiaatllsllkagdevisdetlyGctfalledaltkfgidvkfvdmas.....peevkaaikdntkivyfetpanptlklidleavvrvake..kgv 175
ia l+ l++ +de++ + +++k + +k ++++ +++ + i ++tki+ f n t + d++++++ ++ ++v
MMSYN1_0441 96 NMIAKGLINLINQDDEILITSLEHSSNLVPWIWLKQKTNAVIKNLELTNdfgidINKLDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRSinQNV 193
5566666777777777776666666665555555666665555555543112125678889**************************99887622558 PP
TIGR01328 176 kvivdntfatplltrpv.alGvdvvvhsatkyigGhgdvvaGvliGdaellqr 227
++vd + + ++ v + vd++ sa k g g Gvl G+ +ll++
MMSYN1_0441 194 IIVVDVAQSIAHFKVDVkDWDVDFIAFSAHKMYGPFG---VGVLYGKYQLLDK 243
889999988888877764799**********987766...5888888877766 PP
>> TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.3 0.4 1.4e-05 0.0029 76 177 .. 96 204 .. 29 236 .. 0.69
Alignments for each domain:
== domain 1 score: 14.3 bits; conditional E-value: 1.4e-05
TIGR01324 76 aavtnallafvkaGdevlvvd....saykP...trrfcdivlkrlgveveyydPkig.ediaalikpntkvvfleaPasltlevqdiPaiakaar..a 163
+++ l+ +++ de+l++ s P ++ ++ v+k l+++ ++ i +++ li+p+tk++ + t ++d+ i++ r +
MMSYN1_0441 96 NMIAKGLINLINQDDEILITSlehsSNLVPwiwLKQKTNAVIKNLELTNDF---GIDiNKLDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRsiN 190
356777888888888888864222133344222467788899998887644...55557899************999999*********999888789 PP
TIGR01324 164 agvvvlidntwaag 177
++v++++d + + +
MMSYN1_0441 191 QNVIIVVDVAQSIA 204
9*******887654 PP
>> TIGR03947 viomycin_VioD: capreomycidine synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.7 0.0 2.3e-05 0.005 67 167 .. 80 185 .. 66 212 .. 0.67
Alignments for each domain:
== domain 1 score: 13.7 bits; conditional E-value: 2.3e-05
TIGR03947 67 GdaekvlvthGsseaiylv...ltallrPGdevvvvdpayhs.lse...lavalgakvrrwplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGa 157
+ +++ t G++++i ++ l l++ de++++ + s l+ l + ++a ++ l+ ++df +d+++l +l+t++t+++ n tG
MMSYN1_0441 80 NHTSEIIFTSGTTQSINMIakgLINLINQDDEILITSLEHSSnLVPwiwLKQKTNAVIK--NLELTNDFGIDINKLDQLITPKTKIISFAHISNTTGY 175
55667778888777776652226677888999988776655423321113334444444..55666********************999999999998 PP
TIGR03947 158 svderelsel 167
d ++ +
MMSYN1_0441 176 INDVKKIIQK 185
7766554444 PP
>> TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.1 0.9 3.1e-05 0.0066 131 209 .. 149 230 .. 72 237 .. 0.85
Alignments for each domain:
== domain 1 score: 13.1 bits; conditional E-value: 3.1e-05
TIGR01326 131 dleelekaidentkavfletignPkldvlDiekvaevak..kagvplivDntvatp.ylvrPlehGadivvhsatkylgGhg 209
d+++l+++i ++tk + + i+n + + D++k+ + + +++v ++vD + + + + v ++ +d + sa k +g g
MMSYN1_0441 149 DINKLDQLITPKTKIISFAHISNTTGYINDVKKIIQKIRsiNQNVIIVVDVAQSIAhFKVDVKDWDVDFIAFSAHKMYGPFG 230
688999***************************9876661245899999999988845566668999999999999988655 PP
>> TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.9 0.3 4.3e-05 0.0092 89 208 .. 80 203 .. 26 217 .. 0.74
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 4.3e-05
TIGR03540 89 dpetevlsliGskeGiahlp...lafvnpGdivlvpdPgyPvykistllaggepyel..PlkeendflPdldaipedvlkkakilflnyPnnPtsava 181
+ +e++ G+ + i+ ++ + ++n+ d +l+++ + + + + ++ + l+ ndf d++++++ ++ k+ki+ + +n t+ +
MMSYN1_0441 80 NHTSEIIFTSGTTQSINMIAkglINLINQDDEILITSLEHSSNLVPWIWLKQKTNAVikNLELTNDFGIDINKLDQLITPKTKIISFAHISNTTGYIN 177
5556666666666665555511145667888888888877777776665555544432268889*********************************9 PP
TIGR03540 182 dkeffkevvefakeyniivvhdaayse 208
d + + + ++ ++n+i+v d a s
MMSYN1_0441 178 DVKKIIQKIRSI-NQNVIIVVDVAQSI 203
987776666654.56777778877665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (412 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 374 (0.0833333); expected 89.8 (0.02)
Passed bias filter: 145 (0.0323084); expected 89.8 (0.02)
Passed Vit filter: 31 (0.00690731); expected 4.5 (0.001)
Passed Fwd filter: 21 (0.00467914); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 21 [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.27
# Mc/sec: 2191.30
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0441 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0442 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0442.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0442/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0442 [L=145]
Description: iscU 3=Putative tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.4e-22 76.0 1.8 7.1e-22 75.9 1.8 1.0 1 TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU
3.3e-09 35.2 0.5 4.9e-09 34.6 0.5 1.5 1 TIGR03419 NifU_clost: FeS cluster assembly scaffold protein
1.2e-05 22.8 0.1 1.4e-05 22.6 0.1 1.1 1 TIGR02000 NifU_proper: Fe-S cluster assembly protein NifU
4e-05 21.7 1.5 7e-05 20.9 1.0 1.6 2 TIGR01999 iscU: FeS cluster assembly scaffold IscU
Domain annotation for each model (and alignments):
>> TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.9 1.8 6.4e-25 7.1e-22 2 135 .. 7 140 .. 6 142 .. 0.93
Alignments for each domain:
== domain 1 score: 75.9 bits; conditional E-value: 6.4e-25
TIGR01994 2 eslYrevildhakkkrhrgkledaevq.eegkNpsCGDeitltvklegdriediafegeGCsisqAsaslmteaikGktveealklveefeemvkeqe 98
+sl re+i+ h +++++ +++++++ +e+k +C D++ +++ +e+++i+ ++f+g+ C+i++ s +l+++++ ++++a +l+++++ ++ + +
MMSYN1_0442 7 DSLLREIIIKHFLNPENKTLTNNKNAIiKELKSQTCADQLIIEILIENKIIKSMKFDGSACAIATSSIDLLINNLLNLDIKKAIELIKNYQIFLLTGT 104
6899***************999888764899***********************************************************99998666 PP
TIGR01994 99 eeeeeeklgdaevlegvaklpaRikCalLaWkaleea 135
+ ++l++++v+++++k + Ri Ca La + l e+
MMSYN1_0442 105 L-INADQLNELVVMKNIHKQKNRILCASLALNDLLEI 140
6.89999***********************9988666 PP
>> TIGR03419 NifU_clost: FeS cluster assembly scaffold protein NifU
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.6 0.5 4.3e-12 4.9e-09 4 85 .. 13 95 .. 10 145 .] 0.83
Alignments for each domain:
== domain 1 score: 34.6 bits; conditional E-value: 4.3e-12
TIGR03419 4 kvldhftnprnvGeiedadGv.GevgnakcGdimkiylkveddiikdvkfktfGcgaaiasssmatelikGktleealeltnk 85
+++hf np n ++ + + e + +c d++ i + +e++iik +kf c+ a +s + + + ++++a+el ++
MMSYN1_0442 13 IIIKHFLNPENKTLTNNKNAIiKELKSQTCADQLIIEILIENKIIKSMKFDGSACAIATSSIDLLINNLLNLDIKKAIELIKN 95
589**************998626788999*********************977776555555556666777888888887665 PP
>> TIGR02000 NifU_proper: Fe-S cluster assembly protein NifU
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.6 0.1 1.3e-08 1.4e-05 8 92 .. 14 98 .. 10 119 .. 0.83
Alignments for each domain:
== domain 1 score: 22.6 bits; conditional E-value: 1.3e-08
TIGR02000 8 vkehfynPknagvveeane.vGevGslscGdalrlmlkvdpesdkiedagfqtfGcgsaiasssaltelikGktldeal.kvsnkdi 92
+ +hf nP n+ ++ n+ + e+ s +c d l + + e+++i+ +f c+ a +s l + + + +++a+ + n +i
MMSYN1_0442 14 IIKHFLNPENKTLTNNKNAiIKELKSQTCADQL--IIEILIENKIIKSMKFDGSACAIATSSIDLLINNLLNLDIKKAIeLIKNYQI 98
678************9999679*******9976..566667889********99999888888889888888888888845667666 PP
>> TIGR01999 iscU: FeS cluster assembly scaffold IscU
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.9 1.0 6.3e-08 7e-05 3 91 .. 12 98 .. 10 127 .. 0.78
2 ? -0.5 0.0 0.27 3e+02 80 113 .. 105 138 .. 99 145 .] 0.64
Alignments for each domain:
== domain 1 score: 20.9 bits; conditional E-value: 6.3e-08
TIGR01999 3 ekvldhyenprnvGsldkedknvGtglvGapacGdvlklqikvnddgiiedakfktfGcGsaiassslvtelikGksleeakk.ikntei 91
e +++h+ np n +l ++++ + l + +c d l ++i +++ ii+ kf c a +s l+ + + +++a + ikn +i
MMSYN1_0442 12 EIIIKHFLNPENK-TLTNNKNAIIKEL-KSQTCADQLIIEILIEN-KIIKSMKFDGSACAIATSSIDLLINNLLNLDIKKAIElIKNYQI 98
6789********5.7888887777776.5679*********9987.8********99997777777777766666666666543788877 PP
== domain 2 score: -0.5 bits; conditional E-value: 0.27
TIGR01999 80 leeakkiknteiaeelslppvklhcsllaedaik 113
l +a ++++ + ++++ ++ c+ la + +
MMSYN1_0442 105 LINADQLNELVVMKNIHKQKNRILCASLALNDLL 138
4566677777777777777777777777765555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (145 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 207 (0.046123); expected 89.8 (0.02)
Passed bias filter: 66 (0.0147059); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1095.93
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0442 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0443 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0443.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0443/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0443 [L=187]
Description: 5-formyltetrahydrofolate cyclo-ligase 5=Equivalog Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-46 156.4 0.0 1.9e-46 156.3 0.0 1.0 1 TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase
Domain annotation for each model (and alignments):
>> TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 156.3 0.0 4.2e-50 1.9e-46 1 182 [] 3 179 .. 3 179 .. 0.93
Alignments for each domain:
== domain 1 score: 156.3 bits; conditional E-value: 4.2e-50
TIGR02727 1 KkelRkkllearkalseeekkaaseaiakkllalkkakkaktialylslrgEvdtrpliekllkegkrvalPkvdekgkeklffriwspeellkkgkf 98
K+ lRk+lle+rk+++ ++k++ + i++k++ ++k+ + k+i+++ls+++E++tr++i+++l++ v++Pk++ +++++++ +++ l + +kf
MMSYN1_0443 3 KTLLRKQLLEKRKNFDLDYKNTSNLIITNKVIDFIKQHQFKQICIFLSTKYEIETRNIINWCLNHHILVFVPKITTNNNMNMV--LLDNSYLTNFNKF 98
7789**********************************************************************988744444..55777788889** PP
TIGR02727 99 gilepkeeeeelvepdeidlilvPlvafDkegyRlGyGgGyYDRflaklkkktalkvglafafqlveelprephDvpvdaiite 182
+i+ep++ + l +++eid++++P+v+fD++ +R+G+G+G+YD+f++ + + lkvgl+f++q v+++ e+ D+++d+iite
MMSYN1_0443 99 NIQEPTS--NILANLKEIDCVFTPVVGFDNKLNRIGMGKGFYDKFFSLNSFSY-LKVGLCFDKQKVDQIIIESNDIKLDYIITE 179
*****65..6888999*******************************999877.9****************************8 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (187 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 209 (0.0465686); expected 89.8 (0.02)
Passed bias filter: 80 (0.0178253); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1413.37
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0443 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0444 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0444.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0444/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0444 [L=631]
Description: peptidase family M13 2=Generic Proteolysis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (631 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 362 (0.0806595); expected 89.8 (0.02)
Passed bias filter: 111 (0.0247326); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 4314.97
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0444 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0445 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0445.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0445/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0445 [L=427]
Description: gpi 4=Probable Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-07 27.7 0.1 1.2e-06 25.7 0.1 1.9 2 TIGR02128 G6PI_arch: bifunctional phosphoglucose/phosphomann
0.0079 13.2 0.1 0.025 11.5 0.0 1.8 2 TIGR02482 PFKA_ATP: 6-phosphofructokinase
Domain annotation for each model (and alignments):
>> TIGR02128 G6PI_arch: bifunctional phosphoglucose/phosphomannose isomerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.7 0.1 5.2e-10 1.2e-06 6 130 .. 51 199 .. 45 279 .. 0.64
2 ? -0.9 0.0 0.062 1.4e+02 268 305 .. 378 415 .. 345 418 .. 0.75
Alignments for each domain:
== domain 1 score: 25.7 bits; conditional E-value: 5.2e-10
TIGR02128 6 qealei.knieeslki.veeivisGmGGSgiagd....lleellleksle....vpvf.vvkdyrlpakvdek.tlliavSYSGnTeE...Tlsavee 88
++ +e+ k+++++l+ +e +v+ G+GGS + +++ l+ + ++e ++++ + y+l ++ ++k + ++S SG+T+E +e+
MMSYN1_0445 51 KTEYEQmKQVANKLRSeIEALVVIGIGGSYLGCRaadeMIRGLYHQDKVEliyaGNTMsSTYIYQLVEYLKNKnFGICVISKSGTTTEpgiSFRVFEK 148
45677767888899889************876661111555555554433111134443455689999998885778889*******95432233343 PP
TIGR02128 89 .......akkkgakviaiT..sgGkLeemakeegldvikiPkglqpRaalp 130
+ k++ ++aiT G L+++a+++g+++ iP+ + R+++
MMSYN1_0445 149 llvdkvgLNKAKDLIVAITdkNKGALKQLADKKGYQTFVIPNDIGGRFSVL 199
1111111457777899***4447************************9973 PP
== domain 2 score: -0.9 bits; conditional E-value: 0.062
TIGR02128 268 llarilslilladlvsvkLAelrgvdPeevkkIdklkk 305
+ ++ +l+++++l+ A l++v+P + + ++ +k
MMSYN1_0445 378 DDEQFGYLVYFFELALAMSAYLLDVNPFNQPGVEVYKY 415
446778999999999999999******99999988885 PP
>> TIGR02482 PFKA_ATP: 6-phosphofructokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.5 0.0 1.1e-05 0.025 76 110 .. 52 86 .. 19 93 .. 0.81
2 ? -2.3 0.0 0.19 4.2e+02 205 234 .. 151 180 .. 130 187 .. 0.76
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 1.1e-05
TIGR02482 76 keevrekavenlkklgiealvviGGdGsyaGakkl 110
+e + k v+n + +iealvviG Gsy G ++
MMSYN1_0445 52 TEYEQMKQVANKLRSEIEALVVIGIGGSYLGCRAA 86
4444556666667899***************9875 PP
== domain 2 score: -2.3 bits; conditional E-value: 0.19
TIGR02482 205 keqaekkkkksiiivaeeellgsakevakk 234
+++ +k k++i++++++ g +k++a+k
MMSYN1_0445 151 VDKVGLNKAKDLIVAITDKNKGALKQLADK 180
455666788899999999888888888765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (427 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 267 (0.059492); expected 89.8 (0.02)
Passed bias filter: 180 (0.040107); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 2787.23
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0445 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0447 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0447.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0447/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0447 [L=167]
Description: dUTP diphosphatase? 2=Generic Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (167 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 258 (0.0574866); expected 89.8 (0.02)
Passed bias filter: 57 (0.0127005); expected 89.8 (0.02)
Passed Vit filter: 2 (0.000445633); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1199.10
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0447 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0448 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0448.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0448/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0448 [L=255]
Description: trmH-like 3=Putative rRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-31 107.0 6.9 3.9e-31 106.3 6.9 1.4 1 TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family,
2.7e-10 38.3 0.1 4.4e-10 37.6 0.1 1.4 1 TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltra
3.4e-08 31.6 0.1 1.1e-07 29.9 0.1 1.8 1 TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family,
Domain annotation for each model (and alignments):
>> TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 106.3 6.9 2.6e-34 3.9e-31 28 239 .. 42 254 .. 2 255 .] 0.74
Alignments for each domain:
== domain 1 score: 106.3 bits; conditional E-value: 2.6e-34
TIGR00186 28 esktkakkllqlvkkkgvtielvdkkkldkltkngnHqgivaevkpeikeleledlvktakskkapllliLdeitDphNlGailRtAealgvdgvvlk 125
+++++ k+ll + k++++ + + + + +++++ ++i v ++ + + + +k +l+Ld+i+Dp NlG +R+A ++ + v+ +
MMSYN1_0448 42 YNDQIIKTLLGTSKALEILKDEIPNIEQVIEISENVAKKISDTVTS-QQIFAICSMPENTKIDFENNILLLDQIQDPGNLGTLIRSAASFNFKTVIAS 138
2222333333333333333333333222222333333444444444.444444445544444445779****************************** PP
TIGR00186 126 krrsapltstvvktssGalellplvrvtnlsetltklkesgfwivgtsleaeet...kyekkktkklaLvvGnEgkGvrklikkksDflikipmagkv 220
+ + ++ v+++ G l++++lv+ + l ++++l + ++ i+gtsl+ +++ k + ++++k aL++GnEgkG++ + D i+i ma++v
MMSYN1_0448 139 PNSVNFHNQKVLRSTQGNLFQVNLVN-EYLVTVINQLHDNNYIIIGTSLHDDSKplsKVKFDSDDKYALIIGNEGKGISPELLDLIDLNINIEMAEDV 235
***********************987.78999********************9977677777888********************************* PP
TIGR00186 221 dSLNvSVAtgillfeikrq 239
dS+N+ VA i++++i++
MMSYN1_0448 236 DSINAAVAGSIIMYQINNA 254
****************986 PP
>> TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.6 0.1 3e-13 4.4e-10 9 144 .. 114 251 .. 106 255 .] 0.81
Alignments for each domain:
== domain 1 score: 37.6 bits; conditional E-value: 3e-13
TIGR00185 9 PeiPnntGnivrtCaatkaelhlikPlGfalddkrlkraGldywefvelvehksleefleaekekkalflltkkG..tpdhisvkykdtd..ylvfGq 102
+ P n G ++r+ a+++++ + P +++++++ r+ v+lv+ l ++++ ++++ +++ t +++ ++vk+++ d l++G+
MMSYN1_0448 114 IQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGNLFQVNLVNEY-LVTVINQLHDNNYIIIGTSLHddSKPLSKVKFDSDDkyALIIGN 210
45699***********************9998888888887777778888755.55677777777754443433335778889999998885599*** PP
TIGR00185 103 etkGlPkslldelaeqklriPlteevrslnlsnavavvlyea 144
e kG+ +lld + + ++ i ++e+v s+n + a ++++y+
MMSYN1_0448 211 EGKGISPELLDLI-DLNINIEMAEDVDSINAAVAGSIIMYQI 251
***********99.999***********************86 PP
>> TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.9 0.1 7.5e-11 1.1e-07 11 156 .. 113 254 .. 105 255 .] 0.72
Alignments for each domain:
== domain 1 score: 29.9 bits; conditional E-value: 7.5e-11
TIGR00050 11 epktsgNvGsiARamknmGleeLilvnpkvleeeayal.aagakdilenakvvddldeald...dld.lvvgTsarsralkkvlltPreladkllakk 103
+ + +gN+G++ R + + +++ i +p++++ + + + ++ + v + l ++++ d + +++gTs + + l ++ ++
MMSYN1_0448 113 QIQDPGNLGTLIRSAASFNFKTVI-ASPNSVNFHNQKVlRSTQGNLFQVNLVNEYLVTVINqlhDNNyIIIGTSLHDDSK--------PLSKVKFDSD 201
568899**************9975.5666644444444044445555555555556665543335552678999875432........2444555677 PP
TIGR00050 104 gkvalvFGREdsGLtNEElekcdvlvsiptseeYpslNlsqAvavilYelrea 156
k al+ G E++G++ E l++ d+ ++i + e+ s+N + A +i+Y++ +a
MMSYN1_0448 202 DKYALIIGNEGKGISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINNA 254
789**********************************************9765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (255 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 311 (0.0692959); expected 89.8 (0.02)
Passed bias filter: 113 (0.0251783); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.19
# Mc/sec: 1927.32
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0448 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0451 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0451.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0451/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0451 [L=471]
Description: putative glyceraldehyde-3-phosphate dehydrogenase (NADP+) 2=Generic Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-99 330.6 0.1 4.3e-99 330.2 0.1 1.0 1 TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydr
2.7e-92 308.0 0.3 3.2e-92 307.7 0.3 1.0 1 TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
3.3e-90 300.7 0.3 4e-90 300.5 0.3 1.0 1 TIGR01804 BADH: betaine-aldehyde dehydrogenase
1.9e-88 295.1 0.0 2.2e-88 294.9 0.0 1.0 1 TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehy
3.3e-82 274.8 0.1 4.3e-82 274.5 0.1 1.0 1 TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carbox
8.5e-74 246.8 0.0 9.8e-74 246.6 0.0 1.0 1 TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde deh
1.1e-71 239.9 0.1 1.4e-71 239.6 0.1 1.0 1 TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (
1.8e-70 236.2 0.0 2.3e-70 235.9 0.0 1.0 1 TIGR04284 aldehy_Rv0768: aldehyde dehydrogenase, Rv0768 fami
1.9e-64 216.1 0.0 2.4e-64 215.8 0.0 1.0 1 TIGR03374 ABALDH: 1-pyrroline dehydrogenase
6.2e-62 207.9 0.0 8.3e-62 207.4 0.0 1.0 1 TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde deh
1.4e-57 193.3 0.0 1.7e-57 193.0 0.0 1.0 1 TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate deh
5.7e-41 138.7 0.0 7.7e-41 138.2 0.0 1.0 1 TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydroge
5.3e-31 105.5 0.1 7e-31 105.1 0.1 1.1 1 TIGR02278 PaaN-DH: phenylacetic acid degradation protein paa
1.2e-11 41.5 0.0 3e-11 40.2 0.0 1.6 1 TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN
1.7e-08 31.7 0.8 2.7e-08 31.0 0.8 1.2 1 TIGR02518 EutH_ACDH: acetaldehyde dehydrogenase (acetylating
Domain annotation for each model (and alignments):
>> TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 330.2 0.1 1.4e-101 4.3e-99 8 455 .. 8 454 .. 3 467 .. 0.95
Alignments for each domain:
== domain 1 score: 330.2 bits; conditional E-value: 1.4e-101
TIGR03250 8 iaGekvsrdavievrepydgevvgtvpkasvedvrralevaaayrskltr...yerskileraaellaarkeeisdlitlesGlskkdslyevgrvad 102
++G+ ++++++e+ +p d +v g+v + +d+ a+ a++ + + +r+ il++ +l+ ++kee++++i e+ kd+l ev r ++
MMSYN1_0451 8 LDGKLFDNNRILEIINPVDFSVAGQVVSLTKQDINDAFIAAKSSQKAWEStdlEKRISILDKWKQLIDQNKEELAQIIMSETAKPYKDCLTEVIRSVE 105
5799999*******************************9999888776441114699***************************************** PP
TIGR03250 103 vlklaaaevlrddgqifscdltphgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlq 200
+ + ev + +++ d + g k k+ t +gv +ai+pfn+p+n + k+ p++ t n +v kp+ + l l +l y+a lp+ +++
MMSYN1_0451 106 YIDQTFYEVR--NLKTLIIDGAKYGAKNKIGTFMRVAKGVGVAISPFNYPINLAVSKIFPCLVTGNTIVFKPATQGSLIGAKLGELAYQANLPKGIFN 201
9999988876..5678889******************************************************************************* PP
TIGR03250 201 vvtGdpreiadelitdehvdlvtftGgvaiGkliaakagykravlelGGndplivledadldraadlavkGsyknsGqrctavkrilvqesvadrfte 298
vvtG rei+d++it++ +d+++ftG+v +Gk++ + + k +vlelGG dp ivl+d dl++ a+ ++G++ sGqrcta+kr++ + +ad++++
MMSYN1_0451 202 VVTGRGREIGDDIITNKLADFISFTGSVEVGKRLLEISSTKDVVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVITTDKIADQLVP 299
************************************************************************************************** PP
TIGR03250 299 llvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGarlllgnkrdGalyaptvldrvdpelalvreetfGpvspvirfkdiddairisn 396
ll ek ++l +G p d+ d+ +id+++a ++ +++a ++Ga++++g+k++ l pt++d+v+ +++l ee fGpv p+ir +++d+ i+++n
MMSYN1_0451 300 LLKEKINKLTIGLPKDN-CDITPLIDQKTADFVYGLIDDAKNKGAKIIIGDKQEKNLIYPTLVDHVTSDMRLAWEEPFGPVLPIIRTNSVDQMIELAN 396
**************996.7******************************************************************************* PP
TIGR03250 397 stayglssgvctnrldaitkliaelevGtvnvwevpGyrleltpfGGikdsGlGykeGv 455
+++gl ++v t++ld+ ++++levGtvn+ ++ pf G+kdsG G + G+
MMSYN1_0451 397 KSNFGLQASVYTKNLDQALTVAQKLEVGTVNINGKSQRGPDVFPFLGVKDSGFGVQ-GI 454
**********************************999999**************86.44 PP
>> TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 307.7 0.3 1.1e-94 3.2e-92 2 436 .. 22 453 .. 21 458 .. 0.94
Alignments for each domain:
== domain 1 score: 307.7 bits; conditional E-value: 1.1e-94
TIGR01780 2 vnPatGekigkvpevsveeveeaieaaeealktykeltakerakllrkwyelilenkddlaklltlenGkplkeakgevlyaasyleWfaeeakrvyG 99
+nP g+v + + +++++a aa+++ k+++++ ++r ++l kw +li +nk++la+++ e kp+k+ +ev + y++ e + +
MMSYN1_0451 22 INPVDFSVAGQVVSLTKQDINDAFIAAKSSQKAWESTDLEKRISILDKWKQLIDQNKEELAQIIMSETAKPYKDCLTEVIRSVEYIDQTFYEVRNLKT 119
5777777788999999999********************************************************************99999999999 PP
TIGR01780 100 dviaslq...sdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltss 194
+i + + ++k ++ Gv +i+P+n+P + k + l +G t+v+kPa+q l +l +la++a +Pkg++nvvt+ ++e+G+ + ++
MMSYN1_0451 120 LIIDGAKygaKNKIGTFMRVAKGVGVAISPFNYPINLAVSKIFPCLVTGNTIVFKPATQGSLIGAKLGELAYQANLPKGIFNVVTGRGREIGDDIITN 217
99988542214555667899999999************************************************************************ PP
TIGR01780 195 PlvrkvsftGstavGkillkqsastvkkvslelGGnaPlivfddadldqavegalaskfrnagqtcvcanrlyvhesvydefakklaekvkklkvGdG 292
l +sftGs +vGk ll+ s+ k v lelGG+ P iv dd dl++ +++++ f gq c r++ +++ d+++ l+ek++kl++G
MMSYN1_0451 218 KLADFISFTGSVEVGKRLLEISS--TKDVVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVITTDKIADQLVPLLKEKINKLTIGLP 313
*******************9875..69********************************************************************998 PP
TIGR01780 293 ldegvtvGplinekavekvekhiedavekGakvvvgGdkreekggnffePtvlsdvtadmlvakeetfGPlapvfkfddeeevvalandtevGlaayf 390
d+ + pli++k+ + v i+da +kGak+++g +++ n++ Pt++ +vt+dm++a ee fGP+ p+++ ++++++++lan +++Gl a +
MMSYN1_0451 314 KDN-CDITPLIDQKTADFVYGLIDDAKNKGAKIIIGD----KQEKNLIYPTLVDHVTSDMRLAWEEPFGPVLPIIRTNSVDQMIELANKSNFGLQASV 406
765.6899***************************98....44568899************************************************* PP
TIGR01780 391 fskdlakiirvaeelevGlvgvntglis.evvipfGGvkesGlGreg 436
++k+l + ++va++levG v +n + v pf Gvk+sG+G +g
MMSYN1_0451 407 YTKNLDQALTVAQKLEVGTVNINGKSQRgPDVFPFLGVKDSGFGVQG 453
***********************8776515678***********876 PP
>> TIGR01804 BADH: betaine-aldehyde dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 300.5 0.3 1.3e-92 4e-90 11 455 .. 15 453 .. 8 465 .. 0.91
Alignments for each domain:
== domain 1 score: 300.5 bits; conditional E-value: 1.3e-92
TIGR01804 11 agkvleiinPanqeviaevaeatredvekaiaaarraqgewaalsalergrilrriaellrkkneelakletldtGkaleetlvadiddiadvleffa 108
++++leiinP++ v +v + t++d++ a+ aa+ +q+ w + ++r il + +l+ +++eela++ +t k++++ l+ i ++ + + f
MMSYN1_0451 15 NNRILEIINPVDFSVAGQVVSLTKQDINDAFIAAKSSQKAWESTDLEKRISILDKWKQLIDQNKEELAQIIMSETAKPYKDCLTEVIRSVEYIDQTFY 112
6899*****************************************************************************97666655555444444 PP
TIGR01804 109 GladkleGeiielgip....sfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgae 202
+ +l+ ii+ ++ + r++ Gv v i+++nyP+ a+ k+ P l++Gn++v+kP+ l k+ el +a lPkG+fnvv+G+g+e
MMSYN1_0451 113 EV-RNLKTLIIDGAKYgaknKIGTFMRVAKGVGVAISPFNYPINLAVSKIFPCLVTGNTIVFKPATQGSLIGAKLGELAYQANLPKGIFNVVTGRGRE 209
43.34444455443322112666779************************************************************************ PP
TIGR01804 203 vGeelvehkdvakvsltGgvetGkkimaaaaeelkkvtlelGGksPlivfddadlelavdqallanffsaGqvcsnGtrvlvekkikekflaklverv 300
+G+ + ++k + +s+tG+ve Gk++++ + + k+v lelGGk+P iv+dd dle + + + ++f +Gq c++ rv+ +ki ++++ l+e++
MMSYN1_0451 210 IGDDIITNKLADFISFTGSVEVGKRLLEIS--STKDVVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVITTDKIADQLVPLLKEKI 305
***************************975..569*************************************************************** PP
TIGR01804 301 kkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeeldeGffiePtvfadvtddmtivreeifGPvlsvlefeseeevikra 398
+k+ +G + d + ++ Pli + d v i+ +k+ gak++iG k + i Pt++ vt+dm+++ ee fGPvl + +s +++i++a
MMSYN1_0451 306 NKLTIGLPKD-NCDITPLIDQKTADFVYGLIDDAKNKGAKIIIGDKQEK-------NLIYPTLVDHVTSDMRLAWEEPFGPVLPIIRTNSVDQMIELA 395
******9976.689*****************************987544.......4689************************************** PP
TIGR01804 399 ndteyGlaagvftadleraervaerlkaGtvwindyn.lspaevPfGGykqsGiGren 455
n +++Gl a+v+t++l++a va++l++Gtv in p Pf G k+sG+G +
MMSYN1_0451 396 NKSNFGLQASVYTKNLDQALTVAQKLEVGTVNINGKSqRGPDVFPFLGVKDSGFGVQG 453
**********************************7651567778***********765 PP
>> TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 294.9 0.0 7.2e-91 2.2e-88 3 474 .. 6 467 .. 4 471 .] 0.93
Alignments for each domain:
== domain 1 score: 294.9 bits; conditional E-value: 7.2e-91
TIGR02299 3 hlidGelvasesgetfetlsPadnevlasvakGgaedvdkavkaakkafkkwaelkaaerkklllkladliekhadeiavlesldtGqalrlvrkava 100
l+dG+l + ++ +e ++P+d +v ++v++ +++d++ a aak++ k+w++++ +r +l k +li+++ +e+a + +t ++++ +v+
MMSYN1_0451 6 ALLDGKLFDNNR--ILEIINPVDFSVAGQVVSLTKQDINDAFIAAKSSQKAWESTDLEKRISILDKWKQLIDQNKEELAQIIMSETAKPYKDCLTEVI 101
578888888777..99********************************************************************************** PP
TIGR02299 101 raaenf..rffa..dkaeeakdgetlpvdeflnytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGv 194
r+ e +f+ + + dg ++ +++ + +rv+ Gv i+P+n P+ l+ ki P+l +Gnt+v+kpa l a+l+el+ +a+lP+G+
MMSYN1_0451 102 RSVEYIdqTFYEvrNLKTLIIDGAKYGAKNKIGTFMRVAKGVGVAISPFNYPINLAVSKIFPCLVTGNTIVFKPATQGSLIGAKLGELAYQANLPKGI 199
**9965224664114555678***************************************************************************** PP
TIGR02299 195 lnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrngadtlkrlslelGGksPvivfddadleraldavvfmifslnGerctassrllvqesiae 292
+n+v G G+e G+ ++ + +sf+G+ + G+++++ ++ k + lelGGk+P+iv+dd dle+ ++ fs+ G+rcta r++ ++ia+
MMSYN1_0451 200 FNVVTGRGREIGDDIITNKLADFISFTGSVEVGKRLLEI--SSTKDVVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVITTDKIAD 295
************************************998..788****************************************************** PP
TIGR02299 293 dfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltv 390
++v lke+++++ +G P d + ++ Pli+++ + v + ++ a+++Ga+i++G +++ n + Pt++ ++ + mr+a ee fGPvl +
MMSYN1_0451 296 QLVPLLKEKINKLTIGLPKD-NCDITPLIDQKTADFVYGLIDDAKNKGAKIIIGD----------KQEKNLIYPTLVDHVTSDMRLAWEEPFGPVLPI 382
******************87.589******************************3..........345689*************************** PP
TIGR02299 391 ipfkdeeealelandieyGlagyvwtedvgralrvaaaleaGmiyvnsenvrdlr.tPfGGvkasGigreGGdysfdfytetknv 474
i ++ ++ +elan ++Gl + v+t+++++al va++le G + +n + r Pf Gvk+sG g +G ++ f t k +
MMSYN1_0451 383 IRTNSVDQMIELANKSNFGLQASVYTKNLDQALTVAQKLEVGTVNINGKSQRGPDvFPFLGVKDSGFGVQGIVDTLLFSTRYKGI 467
***************************************************986526***********99976666666666655 PP
>> TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 274.5 0.1 1.4e-84 4.3e-82 33 489 .. 4 450 .. 2 465 .. 0.92
Alignments for each domain:
== domain 1 score: 274.5 bits; conditional E-value: 1.4e-84
TIGR01237 33 yplvinGeeveteakidsinpadksevvGkvakasvedaeqalqaakkafeewkktdveeraaillkaaailkrrrhelsallvlevGkiyaeadaev 130
+ +++G+ + + ++ inp+d s v G+v + +d ++a+ aak + ++w td+e+r +il k + + + + el+ +++ e k+y++ +ev
MMSYN1_0451 4 FKALLDGKLFDNNRILEIINPVDFS-VAGQVVSLTKQDINDAFIAAKSSQKAWESTDLEKRISILDKWKQLIDQNKEELAQIIMSETAKPYKDCLTEV 100
567899****************987.88*******************************************************************999 PP
TIGR01237 131 aeaidfle...yyaremiklakskevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkG 225
++++++ y r++ l ++ + + + ++ + +Gv+v+isp+n+p+ ++v +vtGn++v kpa + ++i akl e+ +a lpkG
MMSYN1_0451 101 IRSVEYIDqtfYEVRNLKTLIIDGAKYGAKNKIGTFMRVAKGVGVAISPFNYPINLAVSKIFPCLVTGNTIVFKPATQGSLIGAKLGELAYQANLPKG 198
876666652215566666666666666666666679************************************************************** PP
TIGR01237 226 vlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvv 323
+++ v G+G+e+G+ +++ + +i+ftGs evG r+ e ++ k v+ elGGkd iv ++ d+e+ ++ ++ +af ++Gq+c+a+ rv+
MMSYN1_0451 199 IFNVVTGRGREIGDDIITNKLADFISFTGSVEVGKRLLEISS--------TKDVVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVI 288
**************************************9876........599********************************************* PP
TIGR01237 324 vlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaegklvlggedddskGyfikptifkdvdrkarlaqeeifGpvvavl 421
++k+ d++v + e+ + l++g +++ +++++p+idqk+ d + + i+ +k++g ++ g d+++ i pt++++v + rla ee fGpv+ ++
MMSYN1_0451 289 TTDKIADQLVPLLKEKINKLTIGLPKD-NCDITPLIDQKTADFVYGLIDDAKNKGAKIIIG--DKQEKNLIYPTLVDHVTSDMRLAWEEPFGPVLPII 383
**************************9.************************998766664..556667899************************** PP
TIGR01237 422 rakdfdealeiansteygltGgvisnsrerierakaefevGnlyfnrkitGaivgvqpfGGfkmsGtd 489
r++ d+ +e+an++++gl +v++++ ++ ++++evG + +n k v pf G k sG +
MMSYN1_0451 384 RTNSVDQMIELANKSNFGLQASVYTKNLDQALTVAQKLEVGTVNINGKSQRG-PDVFPFLGVKDSGFG 450
**********************************************886533.456788888888865 PP
>> TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 246.6 0.0 3.3e-76 9.8e-74 2 480 .. 5 470 .. 4 471 .] 0.94
Alignments for each domain:
== domain 1 score: 246.6 bits; conditional E-value: 3.3e-76
TIGR03216 2 knfidGafvesektfedispvdgkviaevaeagkeevdaavkaaraalkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldi 99
k +dG+ ++++ +e i+pvd +v ++v +k+++++a aa++++k+ w ++ ++r+++l k + i++ ++e+ + +++t kp + + ++
MMSYN1_0451 5 KALLDGKLFDNNRILEIINPVDFSVAGQVVSLTKQDINDAFIAAKSSQKA-WESTDLEKRISILDKWKQLIDQNKEELAQIIMSETAKPYKDCLT-EV 100
56789*****************************************9998.**************************************987665.66 PP
TIGR03216 100 prgaanf.rvfadvvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpk 196
r++ ++f + v+n +t + + a k+ + +r +Gv isp+n p+ l k+ p l Gnt+v kp+ + + l+e+ ++ +pk
MMSYN1_0451 101 IRSVEYIdQTFYE-VRNLKTLIIDGAKYGAKNKIGTFMRVAKGVGVAISPFNYPINLAVSKIFPCLVTGNTIVFKPATQGSLIGAKLGELAYQANLPK 197
6777776256666.7999**************************999*************************************************** PP
TIGR03216 197 GvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvkevslelGGknaaivfadadldaavegvlrsaflntGqvclgtervyverp 294
G++nvv G G + + +t ++ d i+ftG + G+ +++ + + k+v lelGGk++aiv+ d dl++ + ++ af+ +Gq c + +rv +
MMSYN1_0451 198 GIFNVVTGRGREIGDDIIT-NKLADFISFTGSVEVGKRLLEIS--STKDVVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVITTDK 292
**********997666555.6678****************976..579************************************************** PP
TIGR03216 295 ifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqptiwtglpdsarvvkeeifGpvch 392
i d++v lkek++kl++G p+d ++++ pli ++ d v + + a+++Ga++++G +++e + pt+ ++++ r ee fGpv
MMSYN1_0451 293 IADQLVPLLKEKINKLTIGLPKD-NCDITPLIDQKTADFVYGLIDDAKNKGAKIIIG--------DKQEKNLIYPTLVDHVTSDMRLAWEEPFGPVLP 381
*********************99.799****************************98........466778999************************ PP
TIGR03216 393 vapfdseeeviarandtayGlaasvwtedlsrahrvakklevGvvwvnswflrdlr.tpfGGsklsGiGreGGvhslefytelknvcvk 480
+ +s +++i++an++++Gl asv+t++l++a va+klevG v +n r pf G+k sG G +G v +l f t k ++++
MMSYN1_0451 382 IIRTNSVDQMIELANKSNFGLQASVYTKNLDQALTVAQKLEVGTVNINGKSQRGPDvFPFLGVKDSGFGVQGIVDTLLFSTRYKGIVIN 470
***************************************************99764169***********************9999986 PP
>> TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 239.6 0.1 4.6e-74 1.4e-71 4 458 .. 7 454 .. 4 469 .. 0.90
Alignments for each domain:
== domain 1 score: 239.6 bits; conditional E-value: 4.6e-74
TIGR01722 4 lidGkfvegksdkyipvsnpatnevlakvaeasaeevdaavasaretfaawaetsvaerarvllryqallkehrdeiaklisaeqGktledakGdvar 101
l+dGk+ + +++ ++ np++ +v ++v ++++++ a +a+ + aw+ t + +r ++l ++++l++++++e+a++i++e k ++d +v+r
MMSYN1_0451 7 LLDGKLFD--NNRILEIINPVDFSVAGQVVSLTKQDINDAFIAAKSSQKAWESTDLEKRISILDKWKQLIDQNKEELAQIIMSETAKPYKDCLTEVIR 102
56666665..467889********************************************************************************** PP
TIGR01722 102 Glevvehac....svtslllGetvesvakdvdvysirqplGvvaGitpfnfpamiplw.mfplaiacGntfvlkpsekvpsaavklaellseaGapdG 194
+e ++++ ++++l++ + + ak+ +r Gv + i+pfn+p + + +fp ++ Gnt v+kp+ + + kl el +a +p+G
MMSYN1_0451 103 SVEYIDQTFyevrNLKTLII-DGAKYGAKNKIGTFMRVAKGVGVAISPFNYPINLAVSkIFP-CLVTGNTIVFKPATQGSLIGAKLGELAYQANLPKG 198
*****987521114444444.44555555555556899**************9888752677.6899******************************* PP
TIGR01722 195 vlnvvhGd.keavdrllehpdvkavsfvGsvavgeyiyetgsahgkrvqalaGaknhmvvlpdadkeaaldalvgaavGaaGqrcmaisaavlvGaa. 290
++nvv G +e d ++ +sf Gsv+vg+ + e +s+ k v G k+ ++vl d d+e+ ++++++ a+ +Gqrc ai ++ ++
MMSYN1_0451 199 IFNVVTGRgREIGDDIITNKLADFISFTGSVEVGKRLLEISST--KDVVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVITTDKIa 294
*******62666799***999******************9886..67888999****************************************99977 PP
TIGR01722 291 kelveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldGrgykveGyeeGnfvGitllervkpdmkiykeeifGpvlvvle 388
++lv+ ++e+++k+ +g +d ++++ pli +++ + v li+++ ++Ga++++ +e n + +tl+++v +dm+ ee fGpvl +++
MMSYN1_0451 295 DQLVPLLKEKINKLTIGLPKD-NCDITPLIDQKTADFVYGLIDDAKNKGAKIIIGD-------KQEKNLIYPTLVDHVTSDMRLAWEEPFGPVLPIIR 384
9****************8877.579***************************9865.......46789****************************** PP
TIGR01722 389 adtleeaiklinespyGnGtaiftsdGaaarkfqheievGqvGvnvpipvplpffsftGwkdslfGdlhi 458
++++++ i+l n+s +G ++++t++ a + +++evG v +n +f f G kds fG + i
MMSYN1_0451 385 TNSVDQMIELANKSNFGLQASVYTKNLDQALTVAQKLEVGTVNINGKSQRGPDVFPFLGVKDSGFGVQGI 454
**********************************************999999***********9997765 PP
>> TIGR04284 aldehy_Rv0768: aldehyde dehydrogenase, Rv0768 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 235.9 0.0 7.6e-73 2.3e-70 3 460 .. 6 451 .. 4 460 .. 0.92
Alignments for each domain:
== domain 1 score: 235.9 bits; conditional E-value: 7.6e-73
TIGR04284 3 llidGklvagsagtfetvnpateevlGvaadataedmdaaieaarrafdetdw.srdtelrvrclrqlrdalrehveelreltiaevGaprlltagaq 99
l+dGkl + + +e++np v G+ t +d+++a aa+++ w s+d e r+ +l + ++ + ++ eel +++++e p
MMSYN1_0451 6 ALLDGKLFDNN-RILEIINPVDFSVAGQVVSLTKQDINDAFIAAKSSQ--KAWeSTDLEKRISILDKWKQLIDQNKEELAQIIMSETAKPYK----DC 96
689***99865.689****************************99874..344389*******************************99964....45 PP
TIGR04284 100 legpvedlafaadla.esyewetdlGvasplGiktr.rtlareavGvvgaitpwnfphqinlaklGpalaaGntvvlkpapdtpwvaavlgkliaeet 195
l + +++++ ++ e + +t + ++ +G k++ t +r a Gv ai+p+n+p ++ ++k+ p l +Gnt+v+kpa + + a lg+l+ ++
MMSYN1_0451 97 LTEVIRSVEYIDQTFyEVRNLKTLIIDGAKYGAKNKiGTFMRVAKGVGVAISPFNYPINLAVSKIFPCLVTGNTIVFKPATQGSLIGAKLGELA-YQA 193
66778888888777515556666677789999998735899***************************************************85.678 PP
TIGR04284 196 dlppGvvnivtssdhelgallakdprvdlvsftGstatGravmadaaatlkkvflelGGksafivlddadlaaacsvaafsvavhaGqGcaittrlvv 293
+lp G++n+vt + +e+g + ++ d++sftGs +G+ ++ + + k v lelGGk ivldd dl+ + + ++Gq c+ r++
MMSYN1_0451 194 NLPKGIFNVVTGRGREIGDDIITNKLADFISFTGSVEVGKRLLEIS--STKDVVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVIT 289
9****************************************99765..679*********************9999888889999************* PP
TIGR04284 294 prarydeaveiaaatlaslkaGdpadkgtvcGpvisarqrdrvesyldlavaeGgrlavGGgrpadrekGffveptviagldnnarvareeifGpvlv 391
+ d+ v + ++ +++l+ G p+d+ + p+i ++ d v + +d a+++G+++++G + + + pt++ ++ + r a ee fGpvl
MMSYN1_0451 290 TDKIADQLVPLLKEKINKLTIGLPKDNCDI-TPLIDQKTADFVYGLIDDAKNKGAKIIIGDKQ-----EKNLIYPTLVDHVTSDMRLAWEEPFGPVLP 381
99999*********************9887.6***************************9654.....445799************************ PP
TIGR04284 392 viahdgdddavriandspyGlsgtvfsadeerakavaarlrvGtvnvnGGvwysadv.pfGGykqsGiGr 460
+i ++ d+ + +an+s +Gl ++v++++ ++a +va++l vGtvn+nG ++dv pf G k+sG G
MMSYN1_0451 382 IIRTNSVDQMIELANKSNFGLQASVYTKNLDQALTVAQKLEVGTVNINGKSQRGPDVfPFLGVKDSGFGV 451
********************************************************87*********996 PP
>> TIGR03374 ABALDH: 1-pyrroline dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 215.8 0.0 8e-67 2.4e-64 3 453 .. 5 451 .. 3 467 .. 0.90
Alignments for each domain:
== domain 1 score: 215.8 bits; conditional E-value: 8e-67
TIGR03374 3 klliegklvagegekqavynpatgevileiaeasaeqvdaavraadaafaewgqttpkaraelllkladaieenaevfaklesrncgkplhavlndei 100
k l++gkl + + + + np v ++ +++++ a aa+++ w t r ++l k + i++n e++a++ + kp++ l + i
MMSYN1_0451 5 KALLDGKLFDNN-RILEIINPVDFSVAGQVVSLTKQDINDAFIAAKSSQKAWESTDLEKRISILDKWKQLIDQNKEELAQIIMSETAKPYKDCLTEVI 101
789999999866.67899******************************************************************************** PP
TIGR03374 101 paivdvfrffagaarclsglaa.g.ey.leghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaelakd.ilpag 194
++ + + f r l+ l g +y + + r gv +i+p+nyp+ +a k+ p+l +gn +v+kp+ + l kl ela + lp g
MMSYN1_0451 102 RSVEYIDQTFYEV-RNLKTLIIdGaKYgAKNKIGTFMRVAKGVGVAISPFNYPINLAVSKIFPCLVTGNTIVFKPATQGSLIGAKLGELAYQaNLPKG 198
*998888777654.44444433121221334445566888889899*******************************************965269*** PP
TIGR03374 195 vvnvlfgrgktvgdaltghekvrmvsltgsiatgehilahtaasikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriyaqrgiy 292
+ nv+ grg+++gd + + ++s+tgs+ g+ +l+ +s k +elggk p iv+dd d+++ ++ + + f +gq cta r+ + i
MMSYN1_0451 199 IFNVVTGRGREIGDDIITNKLADFISFTGSVEVGKRLLE--ISSTKDVVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVITTDKIA 294
*************************************98..5689***************************************************** PP
TIGR03374 293 delveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitggekvkgkgyyfaptllagakqddaivqkevfgpvvsitvfdd 390
d+lv l + + l ig p+d+ ++ pl+ + + v +++++ak + k+i g ++ k ptl+ d + +e fgpv+ i +
MMSYN1_0451 295 DQLVPLLKEKINKLTIGLPKDN-CDITPLIDQKTADFVYGLIDDAKNKG-AKIIIGDKQEKNLI---YPTLVDHVTSDMRLAWEEPFGPVLPIIRTNS 387
********************97.589********************987.57787776666543...3****************************** PP
TIGR03374 391 eeqvvrwandsryglassvwtkdvgrahrlsarlqygctwvnthfmlvse.mphggqklsgygk 453
+q+++ an+s++gl +sv+tk++ +a ++ +l+ g +n + + +p g k sg+g
MMSYN1_0451 388 VDQMIELANKSNFGLQASVYTKNLDQALTVAQKLEVGTVNINGKSQRGPDvFPFLGVKDSGFGV 451
******************************************9988765526999999999995 PP
>> TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 207.4 0.0 2.8e-64 8.3e-62 15 447 .. 19 448 .. 8 451 .. 0.89
Alignments for each domain:
== domain 1 score: 207.4 bits; conditional E-value: 2.8e-64
TIGR03240 15 lesldpvtqevlwqgkaasaaqvekavkaarkafpawarlsleeriavvkrfaelleeekeelaeviaketgkplweartevasmvakvaisikay.e 111
le ++pv+ v q + +++++++a aa+ + +aw +++le+ri+++ ++++l++++keela++i et+kp+ ++ tev v+ ++ + +
MMSYN1_0451 19 LEIINPVDFSVAGQVVSLTKQDINDAFIAAKSSQKAWESTDLEKRISILDKWKQLIDQNKEELAQIIMSETAKPYKDCLTEVIRSVEYIDQTFYEVrN 116
66789999999999999*****************************************************************9999999876533303 PP
TIGR03240 112 ert....GekeseladakavlrhrphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqG.aretGka 204
+t G k + ++ +++r ++Gv + p+n+p l +i p l++Gnt+vfkp+ l++ ++ +l +a lp+G++n+v G +re G
MMSYN1_0451 117 LKTliidGAKYGAKNKIGTFMR-VAKGVGVAISPFNYPINLAVSKIFPCLVTGNTIVFKPATQGSLIGAKLGELAYQANLPKGIFNVVTGrGREIGDD 213
3442222444444444444444.688999999*********************************************************9569***** PP
TIGR03240 205 laaeedidGllftGssntGallhrqlagrpekilalelGGnnplvveevkdidaavhlivqsafisaGqrctcarrllvkdgaeGdallerlvevaer 302
+++++ d + ftGs + G+ l + + + + lelGG +p +v + d++ +++i+ af +Gqrct +r++ +++ d l+ l e ++
MMSYN1_0451 214 IITNKLADFISFTGSVEVGKRLLEISST-KD--VVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVIT-TDKIADQLVPLLKEKINK 307
*******************999875544.44..568****************************************865.6678999*********** PP
TIGR03240 303 ltvgkydaepqpflGavisekaakellaaqekllalggksllelkqleeeaalltpgiid.vtevaevpdeeyfgpllkvlrykdfdealaeanntrf 399
lt+g +++ + + ++i +k+a+ + ++++++g+k ++ kq e+ l+ p+++d vt+ + ee fgp+l ++r +++d+ ++ an+++f
MMSYN1_0451 308 LTIGLPKDNCD--ITPLIDQKTADFVYGLIDDAKNKGAKIIIGDKQ---EKNLIYPTLVDhVTSDMRLAWEEPFGPVLPIIRTNSVDQMIELANKSNF 400
****9877765..89************************9997654...678*******967777899****************************** PP
TIGR03240 400 GlaaGllsddrelydkflleiraGivnwnkpltGassaapfGGiGasG 447
Gl a + +++ ++ ++ ++ G vn n + pf G+ sG
MMSYN1_0451 401 GLQASVYTKNLDQALTVAQKLEVGTVNINGKSQRGPDVFPFLGVKDSG 448
*****************************999999999******9998 PP
>> TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 193.0 0.0 5.7e-60 1.7e-57 40 481 .. 6 448 .. 1 458 [. 0.87
Alignments for each domain:
== domain 1 score: 193.0 bits; conditional E-value: 5.7e-60
TIGR01238 40 pivgekakaegeaqpvknpadrkdivGqvseadaaevqeavdsavaafaewsatdakeraailerladlleshmpelvallvreaGktlsnaiaevre 137
+++++k +++ + + np+d + Gqv ++++++a +a ++ w++td ++r +il++ +l++++ el ++++ e+ k ++++ ev
MMSYN1_0451 6 ALLDGKLFDNNRILEIINPVDFS-VAGQVVSLTKQDINDAFIAAKSSQKAWESTDLEKRISILDKWKQLIDQNKEELAQIIMSETAKPYKDCLTEVIR 102
56778888888999999***986.67***********************************************************************9 PP
TIGR01238 138 avdflr..yyakqvedvldeesaka.............lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagvi 220
+v+++ +y + ++l + ak +G+ v+isp+n+p+ + + +i l++Gnt++ kpa q sli a+ el +a +p g+
MMSYN1_0451 103 SVEYIDqtFYEVRNLKTLIIDGAKYgaknkigtfmrvaKGVGVAISPFNYPINLAVSKIFPCLVTGNTIVFKPATQGSLIGAKLGELAYQANLPKGIF 200
999986224544444566666666578999******999*********************************************************** PP
TIGR01238 221 qllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedv 318
+++ GrG ++G + +++ + ftGs ev +++ + +++ +d ++ e GG++ iv e+ +++++ af +Gqrc+a++ ++ +++
MMSYN1_0451 201 NVVTGRGREIGDDIITNKLADFISFTGSVEVGKRLLE-ISSTKD----VVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVITTDKI 293
****************9999************99864.444444....56799**997777666667999**************************** PP
TIGR01238 319 adrvltlikGamdelkvgkpirlttdvGpvidaeakqnllahiekmkakakkvaqvkleddvesekgtfvaptlfe..lddldelkkevfGpvlhvvr 414
ad+++ l+k +++l +g p+ + d+ p+id+++ + + i+ k+k+ k+ d ++ +++ ptl++ d+ +e fGpvl ++r
MMSYN1_0451 294 ADQLVPLLKEKINKLTIGLPKD-NCDITPLIDQKTADFVYGLIDDAKNKGAKIIIG---D---KQEKNLIYPTLVDhvTSDMRLAWEEPFGPVLPIIR 384
********************75.79********************99998877533...2...3557888999887324567777899*********8 PP
TIGR01238 415 ykadeldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyvnrn.lvGavvGvqpfGGeGlsG 481
+ +d++++ n++ +gl v++++ + + ++ +vG v +n + + G v pf G sG
MMSYN1_0451 385 T--NSVDQMIELANKSNFGLQASVYTKNLDQALTVAQKLEVGTVNINGKsQRGP--DVFPFLGVKDSG 448
5..689****************************************96414443..345555554444 PP
>> TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 138.2 0.0 2.6e-43 7.7e-41 38 479 .. 10 431 .. 3 449 .. 0.84
Alignments for each domain:
== domain 1 score: 138.2 bits; conditional E-value: 2.6e-43
TIGR01236 38 gkevvksnelievvaPadhqaklakltnateedvkkaveaaldakkeWselpfadraaiflkaadllsgkyreeilaatmlgqsktvyq...aeidav 132
g + +++n ++e+ +P d + + ++++ t++d+++a aa++++k W++ ++++r +i+ k +l+ + +ee+ a+++++++ ++y+ +e+
MMSYN1_0451 10 G-KLFDNNRILEIINPVDFS-VAGQVVSLTKQDINDAFIAAKSSQKAWESTDLEKRISILDKWKQLIDQN-KEEL-AQIIMSETAKPYKdclTEVIRS 103
4.45899999*******986.5689999*************************************99754.5555.5555555666666122344444 PP
TIGR01236 133 aelidffrfnvkyarelleqqPsvsapgelnkve..yrpleGfvaaisPfnftaiaanlagaPalm.GnvvvWkPsktavlsnyllmkileeaGlPpg 227
+e id ++v+ ++l+ + g nk+ r +G +aisPfn+ a P l+ Gn++v+kP++ l l ++ +a lP+g
MMSYN1_0451 104 VEYIDQTFYEVRNLKTLIIDGA---KYGAKNKIGtfMRVAKGVGVAISPFNYPINLAVSKIFPCLVtGNTIVFKPATQGSLIGAKLGELAYQANLPKG 198
5666777777777777766665...56777775422799*************765555566677755******************************* PP
TIGR01236 228 vinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhpsadveevvaatirgafeyqGqkcsaasrly 325
+ n+v++ g +++d + ++k + ftGs++v k+l + + +v e GGkd +v d+e+ + +i gaf y Gq+c+a+ r+
MMSYN1_0451 199 IFNVVTGRGREIGDDIITNKLADFISFTGSVEVGKRLLEI--------SSTKDVVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVI 288
******************999999*******999988753........33346899****************************************** PP
TIGR01236 326 vpkslwkelkeellaelkkvkvgdvddlssfmgavideksfakivkviekakkdpeeleilaGGkyddskGyfvePtvveskdPkeklmkeeifGPvl 423
++ + ++l l+++ +k+ +g ++d ++++id+k+ + + +i++ak++ +i++G k ++ ++ Pt+v + +l ee fGPvl
MMSYN1_0451 289 TTDKIADQLVPLLKEKINKLTIGLPKDNC-DITPLIDQKTADFVYGLIDDAKNKG--AKIIIGDKQEK---NLIYPTLVDHVTSDMRLAWEEPFGPVL 380
************************99965.579********************76..89999966655...6899*********************** PP
TIGR01236 424 tvyvydddkykeilevvdstskyaltGavfakdreaieeaekklrfaaGnfyindk 479
+ + ++++e+ + s+++l +v++k+ + ++ +kl G in k
MMSYN1_0451 381 PIIR--TNSVDQMIELAN-KSNFGLQASVYTKNLDQALTVAQKLEV--GTVNINGK 431
9975..567899999875.589***********9988888888875..44446666 PP
>> TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 105.1 0.1 2.3e-33 7e-31 141 430 .. 137 415 .. 17 432 .. 0.76
Alignments for each domain:
== domain 1 score: 105.1 bits; conditional E-value: 2.3e-33
TIGR02278 141 ltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqlivGsvgdlldhl...dsrdvvaftGsaatae 235
+ +Gv v i fn+P+ + k+ P++++G + kPat + + l l + lP+G +++++G +++ d + + d + ftGs + ++
MMSYN1_0451 137 MRVAKGVGVAISPFNYPINLAVSKIFPCLVTGNTIVFKPATQGSLIGAKLGELAYQ-ANLPKGIFNVVTGRGREIGDDIitnKLADFISFTGSVEVGK 233
34568************************************988887666666555.568**********988877765222567************* PP
TIGR02278 236 klrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalveavlealkarlakvklGdPreedvklGp 333
+l + ++ e ++a++ +d+ +++++kei+ + +Gq+ctai+rv+ + ++++ lk++++k+ +G P+ ++ ++ p
MMSYN1_0451 234 RLLEISSTKD----VVLELGGKDPAIVLDDLD-----LEKYAKEIISGAFSYSGQRCTAIKRVITTDKIADQLVPLLKEKINKLTIGLPK-DNCDITP 321
*987665443....456777778898877776.....9***************************************************7.5789*** PP
TIGR02278 334 lvsveqredveaavaallaagaevrlgdpeeldGaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGslvaslvtadpevar 430
l++++ + v ++ ++ga++ +gd++e + + Ptl+ ++ + e+fGPv ++ +++++ ++la + + l as+ t++ + a
MMSYN1_0451 322 LIDQKTADFVYGLIDDAKNKGAKIIIGDKQEKN--LIYPTLVDHVTSDM-RLAWEEPFGPVLPIIRTNSVDQMIELANKSNFGLQASVYTKNLDQAL 415
****************************99876..66699987766654.56778***********************************9765554 PP
>> TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.2 0.0 9.9e-14 3e-11 88 481 .. 43 409 .. 31 430 .. 0.75
Alignments for each domain:
== domain 1 score: 40.2 bits; conditional E-value: 9.9e-14
TIGR02288 88 alleaakkalkgwrdaGararvgvcleilqrlnkrslelahavmhttGqafmmafqaGGphaqdrGleavayayremsripetavwekpqGkkdplkl 185
aak ++k+w + r+++ + q +++ ela+ +m t + + + r +e + ++ e++++ + G k+ +
MMSYN1_0451 43 DAFIAAKSSQKAWESTDLEKRISILDKWKQLIDQNKEELAQIIMSETAKPYKDCLT-----EVIRSVEYIDQTFYEVRNLKTLIIDGAKYGAKNKI-- 133
44456667788888888888888877788888888888888888888888766554.....34577777777777777777666666666666655.. PP
TIGR02288 186 ekrfeivprGialvigcstfptwntypGlfaslatGnavlvkphpgailplaltvkvarevlaeaGfdpnlvalaaeeaeeevaqrlaldpavrivdf 283
f v++G+++ i+ +p + +f +l tGn+++ kp + l a ++a + a + p+ + +++ + e+ + + ++ + f
MMSYN1_0451 134 -GTFMRVAKGVGVAISPFNYPINLAVSKIFPCLVTGNTIVFKPATQGSLIGAKLGELAYQ----ANL-PKGIFNVVTGRGREIGDDIITNKLADFISF 225
.47999*************************************88777655544444433....333.33344455556889999999999999**** PP
TIGR02288 284 tGsnafGewleqnarqaqvytekaGvntviiestddlkavlrnlafslslysGqmctttqailvprdGirtdegrksydevaadlaaaidkl....lg 377
tGs G+ l + + v e+ G + i+ dl+ ++++ ysGq ct+ + + + d i d+++ l + i+kl
MMSYN1_0451 226 TGSVEVGKRLLEISSTKDVVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRV-ITTDKIA--------DQLVPLLKEKINKLtiglPK 314
***************************999999999*******9999999********9887.4556664........55566666666665200034 PP
TIGR02288 378 ddaravallGaiqsedtvariaearalG.evlldskklehpefpdarvrtplllkvdaadeaayaeerfGpiafvvavddaahavelarrvvrekGal 474
d+ + l+ ++ + i++a+++G +++ k+ + ++ p l+ ++d ee fGp+ ++++++ ++ +ela+++ + l
MMSYN1_0451 315 DNCDITPLIDQKTADFVYGLIDDAKNKGaKIIIGDKQEK-------NLIYPTLVDHVTSDMRLAWEEPFGPVLPIIRTNSVDQMIELANKS---NFGL 402
66666666666677778999********44444444433.......4556889999999999999***********************986...3345 PP
TIGR02288 475 tlgvytt 481
+vyt
MMSYN1_0451 403 QASVYTK 409
6666665 PP
>> TIGR02518 EutH_ACDH: acetaldehyde dehydrogenase (acetylating)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.0 0.8 9.2e-11 2.7e-08 8 269 .. 39 303 .. 34 309 .. 0.80
Alignments for each domain:
== domain 1 score: 31.0 bits; conditional E-value: 9.2e-11
TIGR02518 8 qevrnlirsakvaqkklaalsqeqidkivkaivdaaeenavklakmaneetG..fGkvedkvlknk.laakivydsikdmktvGi..le...edkekk 97
q++ + ak +qk + e+ i+ + ++n+++la++ et + + v++ + + ++ y+ ++++kt+ i + ++k +
MMSYN1_0451 39 QDINDAFIAAKSSQKAWESTDLEKRISILDKWKQLIDQNKEELAQIIMSETAkpYKDCLTEVIRSVeYIDQTFYE-VRNLKTLIIdgAKygaKNKIGT 135
555566667777777777777777778999999999**********99999744778888999987255666665.899**98552222111334444 PP
TIGR02518 98 vievavpvGvvaglvpstnptstaiyktlisikarnaivlsphpaakkciietvklirkaaekaGapegiiasltvptiegtnelmknkdtslilatG 195
++va+ vG +++ p p a+ k + ++ ++n+iv+ p a++ ++i +k + + a++a p+gi ++t e ++++ nk + i tG
MMSYN1_0451 136 FMRVAKGVG--VAISPFNYPINLAVSKIFPCLVTGNTIVFKP--ATQGSLIG-AK-LGELAYQANLPKGIFNVVTGRGREIGDDIITNKLADFISFTG 227
555555555..6899*************************87..45555555.55.57899************************************* PP
TIGR02518 196 Geamvka..ayssGkpaiGvGpGngpayieksanvkkavkkildsktfdnGticaseqsvvvekvnkdavveelkk 269
+ k ss k + G pa + +++k k+i++ G c++ + v+ + d++v lk+
MMSYN1_0451 228 SVEVGKRllEISSTKDVVLELGGKDPAIVLDDLDLEKYAKEIISGAFSYSGQRCTAIKRVITTDKIADQLVPLLKE 303
9988876225799999988888*********************887777799****99999999888888877776 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (471 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 204 (0.0454545); expected 89.8 (0.02)
Passed bias filter: 153 (0.0340909); expected 89.8 (0.02)
Passed Vit filter: 22 (0.00490196); expected 4.5 (0.001)
Passed Fwd filter: 15 (0.00334225); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 15 [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.26
# Mc/sec: 2601.45
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0451 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0452 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0452.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0452/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0452 [L=643]
Description: DNA topoisomerase IV, B subunit 5=Equivalog DNA topology
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-273 906.3 19.9 2.4e-273 906.2 19.9 1.0 1 TIGR01058 parE_Gpos: DNA topoisomerase IV, B subunit
4.4e-239 793.2 10.8 5.3e-239 792.9 10.8 1.0 1 TIGR01059 gyrB: DNA gyrase, B subunit
6.2e-167 554.7 10.1 7.1e-167 554.5 10.1 1.0 1 TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit
4e-05 21.4 1.8 0.0055 14.4 0.1 2.9 3 TIGR00585 mutl: DNA mismatch repair protein MutL
------ inclusion threshold ------
0.013 13.7 0.4 0.24 9.6 0.3 2.5 2 TIGR01044 rplV_bact: ribosomal protein uL22
Domain annotation for each model (and alignments):
>> TIGR01058 parE_Gpos: DNA topoisomerase IV, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 906.2 19.9 2.7e-276 2.4e-273 3 634 .. 5 634 .. 1 638 [. 0.99
Alignments for each domain:
== domain 1 score: 906.2 bits; conditional E-value: 2.7e-276
TIGR01058 3 kkynedaikvleGleavrkrpGmyiGstdskGlhhlvweivdnsvdevlagyadnievtldkdnsisvqddGrGipveihkkgkistvevvltvlhaG 100
kky+e+ai+vleGl+avrkrpGmyiGstd +Glhhlvweivdn++de+lagy+++i+v+l+kdnsi+v d+GrGip+++hk+g +st+ev+++vlhaG
MMSYN1_0452 5 KKYDESAIQVLEGLDAVRKRPGMYIGSTDNRGLHHLVWEIVDNAIDEALAGYCTQIDVILEKDNSITVIDNGRGIPTGMHKTG-KSTPEVIFSVLHAG 101
78*********************************************************************************.9************* PP
TIGR01058 101 GkfdegayktaGGlhGvGasvvnalsewlevevkrdgkvyqqrfenGGkivqslkkiGttkktGtlvsfkpdpkifkktefnsniikerlkesafllk 198
Gkfd +ayk +GGlhGvG+sv nals+ ++ +++rd+k+++ +f+nGGk + l i +t ktGt+++f pd if++t+fn+ +i+erlkesa+l
MMSYN1_0452 102 GKFDSTAYKSSGGLHGVGSSVTNALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANTYKTGTTINFLPDDSIFSNTKFNFSLISERLKESALLNS 199
************************************************************************************************** PP
TIGR01058 199 dlkleltdkktdkkevffsenGledfvkylneekevlsevvlfkgekngievevafqyndsesenilsfvnsvktkeGGthenglksaltkvlneyar 296
+lk++l d ++++ +++ ++Gl++f+k+l ++k +++++ ++ e+++i e+a+qy+++++e+il f+n+vkt++GGth g+ks l +++n+ya+
MMSYN1_0452 200 GLKITLSDLISNRYVEYQFQDGLVEFIKELVDDKTPVTDIITINNESKNIIAEIALQYTEDDNEIILGFANNVKTSDGGTHLVGFKSGLIRAINDYAK 297
************************************************************************************************** PP
TIGR01058 297 kvnllkekdknlegsdireGlsavisvripeellqfeGqtkdklfskeakevvdeivedklaffleenkeeakllvkkaikardakeaakkareekks 394
+++lk+k k l+ +d+reGl a+++v+ipe+l+++eGqtk+kl++++ak vv++iv + ++++l enk a++++++a++a++a+ aak+ar+ ks
MMSYN1_0452 298 DQKILKDKTK-LDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQIVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQAIKS 394
********87.9************************************************************************************** PP
TIGR01058 395 vkkkkkekgllsGkltpaqsknpaknelflveGdsaGGsaklGrdrkfqailplrGkvlnvekakladilkneeiatlifaiGtGvgadfsikdlkyd 492
vk kk+ + l+ Gkltpaq k+ nel+lveGdsaGGsak Grdr+fqailplrGkv+n ekakl+d+lkneei+++i aiG+Gvg df+i d++y+
MMSYN1_0452 395 VKGKKNVNKLMLGKLTPAQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQSIINAIGAGVGKDFDISDINYG 492
******999***************************************************************************************** PP
TIGR01058 493 kiiimtdadtdGahiqvllltffyrymrplieaGkvyialpplyklskkdgkkvkyawsdleleelkkkl.knytlqrykGlGemnadqlwettmnpe 589
kiiimtdadtdGahiq+llltffyr+m+ li + kvyialpplyk++ ++k + y+w+++el+e +k k+y++qrykGlGemnadqlw+ttm+p+
MMSYN1_0452 493 KIIIMTDADTDGAHIQTLLLTFFYRHMKDLITHKKVYIALPPLYKITF-NDKSFIYLWDEEELNEFNKTNtKKYEIQRYKGLGEMNADQLWQTTMDPK 589
**********************************************86.6789*************99887*************************** PP
TIGR01058 590 trklvrvkiddllraerrvnvlmGdkvelrkkwieknvkfsleee 634
+rk+++v i d l aer ++lmGd+ve rk wi++nvkf+le++
MMSYN1_0452 590 NRKIIQVSISDGLLAERMFKTLMGDDVEKRKLWIQENVKFTLEDD 634
******************************************996 PP
>> TIGR01059 gyrB: DNA gyrase, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 792.9 10.8 6e-242 5.3e-239 1 632 [. 7 628 .. 7 636 .. 0.95
Alignments for each domain:
== domain 1 score: 792.9 bits; conditional E-value: 6e-242
TIGR01059 1 ydadsikvleGleavrkrPgmyiGstgekGlhhlvyevvdnaidealaGycteievtieedgsvtvednGrGiPvdihpeegrsalevvltvlhaGGk 98
yd+++i+vleGl+avrkrPgmyiGst+++Glhhlv+e+vdnaidealaGyct+i+v +e+d+s+tv dnGrGiP+ +h++ g+s+ ev++ vlhaGGk
MMSYN1_0452 7 YDESAIQVLEGLDAVRKRPGMYIGSTDNRGLHHLVWEIVDNAIDEALAGYCTQIDVILEKDNSITVIDNGRGIPTGMHKT-GKSTPEVIFSVLHAGGK 103
899***************************************************************************86.9**************** PP
TIGR01059 99 fdkdsykvsGGlhGvGvsvvnalseklevkvkrdgkeyrqeferg.epigeleavgeetkktGtkvsflpdteifetiefdyeilakrlkelaflnkg 195
fd+ +yk sGGlhGvG sv nals++++ +++rd+k++++ef++g + ++l+ +++ t ktGt+++flpd +if++++f+++++ +rlke a ln+g
MMSYN1_0452 104 FDSTAYKSSGGLHGVGSSVTNALSKRFKATIYRDKKIHEIEFKNGgKLEKPLTFIAN-TYKTGTTINFLPDDSIFSNTKFNFSLISERLKESALLNSG 200
*******************************************98466678999998.9*************************************** PP
TIGR01059 196 vkielederaeslkeeefyyegGikeyvkylnkdkealheeiiyisgekedvevevalqyndaysenilsfanniktreGGthlegfkaaltrvlnsv 293
+ki+l+d s++ +e+++++G+ e++k l +dk++++ +ii+i+ e++++ e+alqy+++ +e il+fann+kt++GGthl gfk++l r++n++
MMSYN1_0452 201 LKITLSDLI--SNRYVEYQFQDGLVEFIKELVDDKTPVT-DIITINNESKNIIAEIALQYTEDDNEIILGFANNVKTSDGGTHLVGFKSGLIRAINDY 295
*******88..678999********************96.7999****************************************************** PP
TIGR01059 294 akkrkllkdeksnltgedireGltavisvkvpdP..qfegqtktklgnsevrsiveklvgealtefleenpeeakaivekaleaakareaarkarelv 389
ak++k+lkd++ +l ++d+reGl+a+++vk+p+ ++egqtk+klg s+++++ve++v+e + +l en+ a++++e+al+a+kar aa++ar+ +
MMSYN1_0452 296 AKDQKILKDKT-KLDSNDLREGLVAIVTVKIPENliEYEGQTKSKLGTSDAKTVVEQIVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQAI 392
********976.5********************7558**********************************************************976 PP
TIGR01059 390 rr.ksalesstl.PGkladcsskdPseselyiveGdsaGGsakqgrdrkfqailPlrGkilnvekarldkilkneeikalitalGlgikeddfdlekl 485
+ k ++++l Gkl+ + k + ely+veGdsaGGsak+grdr+fqailPlrGk++n eka+l +lkneei+++i a+G+g+++d fd++ +
MMSYN1_0452 393 KSvKGKKNVNKLmLGKLTPAQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQSIINAIGAGVGKD-FDISDI 489
64355555554425****************************************************************************8.****** PP
TIGR01059 486 ryhkivimtdadvdGshirtllltffyrylrelveqgyvyiaqpPlykvkkgkkdkelvkalylysdkekeeaksqleskkaeleiqrykGlGemnae 583
y ki+imtdad dG+hi+tllltffyr++++l+ + +vyia pPlyk+ + k +yl+ ++e++e +++ + ++++eiqrykGlGemna+
MMSYN1_0452 490 NYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLITHKKVYIALPPLYKITFNDK-----SFIYLWDEEELNEFNKT-N--TKKYEIQRYKGLGEMNAD 579
**************************************************9983.....46788888888776655.3..347*************** PP
TIGR01059 584 qlWettmdpesrtlkkvkiedaaeadkiftvlmGdeveprrefieanal 632
qlW+ttmdp++r++++v+i+d a+++f++lmGd+ve r+ +i++n +
MMSYN1_0452 580 QLWQTTMDPKNRKIIQVSISDGLLAERMFKTLMGDDVEKRKLWIQENVK 628
*********************************************9944 PP
>> TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 554.5 10.1 7.9e-170 7.1e-167 3 621 .. 6 626 .. 4 636 .. 0.93
Alignments for each domain:
== domain 1 score: 554.5 bits; conditional E-value: 7.9e-170
TIGR01055 3 nysakeievldglepvrkrpGmyi...dttrpnhlaqevldnsvdealaGfaskievilhadqsievidnGrGipvdihpkedvsaveviltklhaGg 97
+y+ +i+vl+gl+ vrkrpGmyi d +hl+ e++dn++dealaG+ ++i+vil +d+si+vidnGrGip +h k ++s+ evi++ lhaGg
MMSYN1_0452 6 KYDESAIQVLEGLDAVRKRPGMYIgstDNRGLHHLVWEIVDNAIDEALAGYCTQIDVILEKDNSITVIDNGRGIPTGMH-KTGKSTPEVIFSVLHAGG 102
79999******************987788889***********************************************.579*************** PP
TIGR01055 98 kfsnknyefsGGlhGvGisvvnalskrveikvkrdGklykiafekGakved.levvetsgkrltGtsvhfkpdpeifdslkfsvsrlreilrakavly 194
kf y+ sGGlhGvG sv nalskr++ ++rd k+++i f++G k+e+ l+ + + +tGt+++f pd+ if+++kf+ s + e l+ a+l
MMSYN1_0452 103 KFDSTAYKSSGGLHGVGSSVTNALSKRFKATIYRDKKIHEIEFKNGGKLEKpLTFIANT--YKTGTTINFLPDDSIFSNTKFNFSLISERLKESALLN 198
*************************************************9735555544..78*********************************** PP
TIGR01055 195 rGveiefedevenkkalilyedGlkdylaeavnglelliekifvGniegddeavewallwlpedgelltesyvnliptiqGGthvnGlrqalldalre 292
+G++i+ d + n+ ++++dGl +++ e v+ + + +i + n e++++ e al + ++d e++ + n + t GGth G++++l++a+++
MMSYN1_0452 199 SGLKITLSDLISNRYVEYQFQDGLVEFIKELVDDKTPV-TDIITINNESKNIIAEIALQYTEDDNEIIL-GFANNVKTSDGGTHLVGFKSGLIRAIND 294
*****************************999866555.567777889************999999876.79************************** PP
TIGR01055 293 fselrnllpravkltiedildrasyvlsikiqdp..qfaGqtkerlssrqvaklvsgvikdafdlflnqdvqaaeklaeiaissaerr......lraa 382
+++ +++l +kl +d+ + ++++ki + +++Gqtk +l + ++ ++v++++ + ++++l +++++a+k++e a+ + + r ++a
MMSYN1_0452 295 YAKDQKILKDKTKLDSNDLREGLVAIVTVKIPENliEYEGQTKSKLGTSDAKTVVEQIVYEFMSYWLIENKVLANKVIENALNAQKARiaakqaRQAI 392
********99*********************99744799******************************************99888886654334455 PP
TIGR01055 383 kkvvrkkltsklalpGkladctaqdlektelflveGdsaGGsakqardreyqailplkGkilnvaevsldkvlasqeiqdlevalaidsdsnd.lsql 479
k v kk ++kl l Gkl+ ++ e el+lveGdsaGGsak rdr++qailpl+Gk++n ++ l ++l+++eiq + a++ + ++ s++
MMSYN1_0452 393 KSVKGKKNVNKLML-GKLTPAQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQSIINAIGAGVGKDFdISDI 489
67778888888877.9*************************************************************************99977**** PP
TIGR01055 480 ryekiiiladadsdGlhiatlllalflkrlpklveeGhvyvalpplyrldlskevy.yaldeeekeklleklkkkkakievqrfkGlGemnpaqlret 576
y+kiii++dad+dG+hi tlll++f+++++ l+ + +vy+alpply+++ +++ + y deee ++ +k + k e+qr+kGlGemn ql +t
MMSYN1_0452 490 NYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLITHKKVYIALPPLYKITFNDKSFiYLWDEEELNE-FNK--TNTKKYEIQRYKGLGEMNADQLWQT 584
***************************************************9988735556666443.333..345579******************* PP
TIGR01055 577 tldpekrrlvkltlddeedqrvdklvddllakkrsedrknflqek 621
t+dp++r+++++++ d+ ++++ l++ e+rk ++qe
MMSYN1_0452 585 TMDPKNRKIIQVSISDGLL--AERMFKTLMGDD-VEKRKLWIQEN 626
**************99877..99*********9.9********95 PP
>> TIGR00585 mutl: DNA mismatch repair protein MutL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 0.1 6.1e-06 0.0055 25 64 .. 39 80 .. 35 85 .. 0.84
2 ? -0.7 0.0 0.23 2.1e+02 163 218 .. 178 231 .. 157 295 .. 0.68
3 ! 4.7 0.1 0.0053 4.7 161 232 .. 341 411 .. 327 466 .. 0.81
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 6.1e-06
TIGR00585 25 svvkELveNsLD.AgA...tkieveveegglklievsDnGsGis 64
+ v E+v+N++D A A t+i+v +e+ ++i v DnG Gi
MMSYN1_0452 39 HLVWEIVDNAIDeALAgycTQIDVILEKD--NSITVIDNGRGIP 80
5789********7444667*******998..569********96 PP
== domain 2 score: -0.7 bits; conditional E-value: 0.23
TIGR00585 163 kspkkelekilklleryalvhpevsfsllsegkkslslstkrkaslkeakvrsvlg 218
++ k +++ i + l++ al+++ ++++l++ +++ ++ + + +l e ++++
MMSYN1_0452 178 SNTKFNFSLISERLKESALLNSGLKITLSDL-ISNRYVEYQFQDGLVEF-IKELVD 231
5556677777888888888888888887775.33333333344455553.444443 PP
== domain 3 score: 4.7 bits; conditional E-value: 0.0053
TIGR00585 161 flkspkkelekilklleryalvhpevsfsllsegkkslslstkrkaslkeakvrsvlgtkvasklipldele 232
+ k+++e+i++ +++y l++++v + + e +++ ++ +++++a ++sv g+k+++kl+ + +
MMSYN1_0452 341 GTSDAKTVVEQIVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQA-IKSVKGKKNVNKLMLGKLTP 411
5677899999*************9998877777677777777778888885.**********9999776554 PP
>> TIGR01044 rplV_bact: ribosomal protein uL22
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.6 0.3 0.00027 0.24 3 39 .. 378 414 .. 376 420 .. 0.88
2 ? 0.8 0.0 0.15 1.3e+02 57 87 .. 583 613 .. 564 624 .. 0.83
Alignments for each domain:
== domain 1 score: 9.6 bits; conditional E-value: 0.00027
TIGR01044 3 artvrisprkarlvidlirGkevaealdiLeftpkka 39
a+++ri++++ar i+ ++Gk+ ++l ++tp ++
MMSYN1_0452 378 AQKARIAAKQARQAIKSVKGKKNVNKLMLGKLTPAQG 414
6789*****************9999998888888765 PP
== domain 2 score: 0.8 bits; conditional E-value: 0.15
TIGR01044 57 nneldadelvvakvfvdeGPtlkrirprakG 87
+ +d+++ ++ +v + +G + r+ +G
MMSYN1_0452 583 QTTMDPKNRKIIQVSISDGLLAERMFKTLMG 613
5689***************999999877777 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (643 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 293 (0.0652852); expected 89.8 (0.02)
Passed bias filter: 111 (0.0247326); expected 89.8 (0.02)
Passed Vit filter: 13 (0.00289661); expected 4.5 (0.001)
Passed Fwd filter: 5 (0.00111408); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.23
# Mc/sec: 4014.68
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0452 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0453 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0453.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0453/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0453 [L=898]
Description: DNA topoisomerase IV, A subunit 5=Equivalog DNA topology
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.9e-268 889.7 35.1 5.8e-268 889.2 35.1 1.2 1 TIGR01061 parC_Gpos: DNA topoisomerase IV, A subunit
4.5e-219 727.3 22.0 5.7e-219 727.0 22.0 1.0 1 TIGR01063 gyrA: DNA gyrase, A subunit
7.9e-152 504.8 21.0 9.6e-152 504.6 21.0 1.1 1 TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit
Domain annotation for each model (and alignments):
>> TIGR01061 parC_Gpos: DNA topoisomerase IV, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 889.2 35.1 3.8e-271 5.8e-268 4 735 .. 10 738 .. 7 740 .. 0.97
Alignments for each domain:
== domain 1 score: 889.2 bits; conditional E-value: 3.8e-271
TIGR01061 4 laleevlgesfgkyakyiiqdralPdirdGlkPvqrrilyamsklgltfdkpykksaktvGeviGkyhPhGdssiyeamvrmsqdWknrevlvemhGn 101
+lee+lg++f++yakyiiq+ralPd+rdGlkPvqrrilyam++l ltfdkpykksa+ vGeviGkyhPhGdssiy+amvrmsq Wk++ lv+m Gn
MMSYN1_0453 10 YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGN 107
69************************************************************************************************ PP
TIGR01061 102 nGsidGdnaaamrytearlskiasellkdidkkvvefvpnfddsekePtvlPalfPnllvnGatGiaaGyatdipPhnlnevldalilridqPdcsvd 199
nGsidGd+aaamrytearl+ki+ ll+d++k++v f+pnfddse ePtvlP+ fPn+lvnGatGiaaGyat++pPhnl+e++da i i++P+ +d
MMSYN1_0453 108 NGSIDGDSAAAMRYTEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEIIDASISIIKNPNITID 205
************************************************************************************************** PP
TIGR01061 200 kllelvkgPdfPtGgeiqgedeikkayetGkGkviirakieievlkngkeqiviteiPyevnkanlvkkieeiivdkkvagieevrdesdrkGlriii 297
++l++vkgPdfPtG++iq++++i++a+ tGkGkvii +k + +++k+ iv+ eiPyev k lvkki ++i ++ gi+e+rde+drkGlri+i
MMSYN1_0453 206 QILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVIISSK--W---HQEKNNIVVDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVI 298
**************************************3..3...334669*********************************************** PP
TIGR01061 298 elkkdlnaekvlnylykktdlqinynlnmvaianrtPilvgllsildayikhskevilnrskyelekakkrleiveGlikaisildeviklirasedk 395
el +++n+e+v ++l+k t l ++yn+n+++i++++P ++gl+ i+ ayi+h kev ++r+ ++l+ka+ rleiv+Glika+sildevik+ir se++
MMSYN1_0453 299 ELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNLNKANLRLEIVNGLIKALSILDEVIKVIRKSENR 396
************************************************************************************************** PP
TIGR01061 396 sdakekliakfeftenqaeaivslrlyrltntdivelkeeeeelekkikeleeiiasekarkkllkkklkelkkkfaqerrskledkikkikieeeel 493
da ++l+++f+ft+nq+ aiv +rlyrlt td+ +l e+ el +kik+ +ei++++ ++ + + +l+e+kk+f+ +r+s++ed +++ +++++e+
MMSYN1_0453 397 IDAINNLVKTFNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEV 494
************************************************************************************************** PP
TIGR01061 494 ieeedlyvvvtkdGyikrtskrsfaaskleelglkdddillaqtiinttdklllvtskgnlinlpvhkladirwkdlgehlskkitldenetivavev 591
i e+++++ ++kdGyik ++ ++ +l+ +g+k +d+ + q + d+l+lv +++n+ +p++k+a+ +wkd g h++ t + neti+ + +
MMSYN1_0453 495 IIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWISQGVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQPNETIINAFI 592
************************************************************************************************** PP
TIGR01061 592 lnefdvdeailvlasklglvkrieltelkikr.skavlilklkdedelisavltkk.eklivlvsklgyallflveevnvvgakaaGvkgmklkedde 687
++ef +++l+l+sk+gl+kr+++++l++k k+ +i+k+ d+d l+ a l+ + ++++k+gya+++++e+++v ++ ++Gvk+ +lk dd
MMSYN1_0453 593 IKEFINSTQHLLLVSKNGLIKRTQISDLETKIfNKSFKIMKISDDDSLVYADLISSkTSYCCIITKNGYAVRYNIEDIPVQSTISKGVKAANLK-DDY 689
***8866677999******************99******************98765388999*******************************9.567 PP
TIGR01061 688 vksvlileaseslvlltqegsvkrlsiselkvtsrakravkll.elkkk 735
+ s l l++++ ++++t++ krl+++ + + r k+++++l e kk+
MMSYN1_0453 690 IISALSLDNNKDVLIFTNKNNYKRLDQNLIPIYIRPKKGIRILvEKKKN 738
77888899999999***************************99555554 PP
>> TIGR01063 gyrA: DNA gyrase, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 727.0 22.0 3.8e-222 5.7e-219 6 776 .. 12 776 .. 7 792 .. 0.95
Alignments for each domain:
== domain 1 score: 727.0 bits; conditional E-value: 3.8e-222
TIGR01063 6 ieeelkesyldYamsvivsRalPdvRDGLkPvhRRilyamkelgltadkaykksarivgdvlgkyhPhGdsavYdalvRmaqdfslRyplvdgqGnfG 103
+ee l + + +Ya +i RalPdvRDGLkPv+RRilyam++l+lt dk+ykksar+vg+v+gkyhPhGds++Yda+vRm+q + + plvd qGn G
MMSYN1_0453 12 LEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNG 109
6677788899**************************************************************************************** PP
TIGR01063 104 sidgDapaamRYtearlakiaeelledidketvdfvanyDgsekePtvlPsrfPnLLvnGssGiavGmatnipphnlgeiidavlllidnedisieel 201
sidgD++aamRYtearl+ki++ lled++k+tv f++n+D+se+ePtvlPs fPn+LvnG++Gia G atn+pphnl+eiida + +i+n++i+i+++
MMSYN1_0453 110 SIDGDSAAAMRYTEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEIIDASISIIKNPNITIDQI 207
************************************************************************************************** PP
TIGR01063 202 levikGPDfPtgaiilgkkgireayktGrGkvvvRakveieekekdreaiivtelPyqvnkakliekiaelvkekkieGisdirDesdreGiRiviel 299
l+++kGPDfPtgaii k+girea+ tG+Gkv++ +k + e +++i+v+e+Py+v k+ l++ki +++ ++ Gi +irDe+dr+G+Riviel
MMSYN1_0453 208 LKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVIISSKWHQE-----KNNIVVDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIEL 300
*************************************9865.....568************************************************* PP
TIGR01063 300 krdavaevvlnklykltqlqvsfgvnllalvkglPkvlnlkelleafvehrkevitrrtkfeLrkakerahilegllialdniDevikliresknkee 397
a+ e v l+k+t l vs++ n++ +v+++Pk+l l ++++a+++h kev ++rt+f+L+ka+ r i++gl++al+ +Devik+ir+s+n+ +
MMSYN1_0453 301 NEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNLNKANLRLEIVNGLIKALSILDEVIKVIRKSENRID 398
************************************************************************************************** PP
TIGR01063 398 akeelverfslsevqakaildlrlrrLtaleaekleeelkellekiaelkeiLaseerlleiikeeleeikeqfgdeRrteiva.eeeekidiedlia 494
a ++lv++f+++ q++ai+d+rl+rLt+ +++kl e++el +ki++++eiL+++ l + i lee+k+qfg +R+++++ e+ ++d++++i
MMSYN1_0453 399 AINNLVKTFNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLEEVKKQFGIKRKSQVEDlVEDLDVDQKEVII 496
********************************************************999999999*****************9744567889999*** PP
TIGR01063 495 keevvvtlsekgyvkrvpvsayrsqkrggkGksglklkeedfiekllvasthdkllffsnkGkvYslkvyqlpeasrtakGkpivnllelekdekita 592
+ e+ + +s++gy+k ++ + ++ + ++ Gk+ ++ + v+s+ d+l+++s++ + Ys+ +y++ +++ + +G +i ++ + +++e i++
MMSYN1_0453 497 EKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDM-----WISQGVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQPNETIIN 589
***********************99988888766554.....445568999*********************************************** PP
TIGR01063 593 ilsvkefedee.ylllatkkGvvkkvslsefk.nirskGiiaikldeeDelisvklvkeede.vlllskkGkavrfkeeevRalgraarGvrgiklkk 687
+kef +++ +lll+ k+G++k++++s+ + +i +k +k++++D+l+ ++l++++ + +++k+G avr++ e++ + + +++Gv++ +l k
MMSYN1_0453 590 AFIIKEFINSTqHLLLVSKNGLIKRTQISDLEtKIFNKSFKIMKISDDDSLVYADLISSKTSyCCIITKNGYAVRYNIEDIPVQSTISKGVKAANL-K 686
*******988769*****************973577889999***************999887999******************************.6 PP
TIGR01063 688 edavvslevvkeesllLivtenGygkrtsieeyrlkkRggkGvksikvtekk.gkvvgalavkdedelllitsagkliRvsveevsevgr 776
+d ++s +++++ +Li t++ kr + +++ R kG++ + ++k+ ++v+ a++d+ ++ ++ ++ ++ ++v++++++
MMSYN1_0453 687 DDYIISALSLDNNKDVLIFTNKNNYKRLDQNLIPIYIRPKKGIRILVEKKKNkEQVIFGFAINDQMSISILDTNDQITDINVSDLKHTNL 776
799999999999*******************************998776665499*****************************998765 PP
>> TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 504.6 21.0 6.4e-155 9.6e-152 5 693 .. 11 710 .. 7 753 .. 0.88
Alignments for each domain:
== domain 1 score: 504.6 bits; conditional E-value: 6.4e-155
TIGR01062 5 dlrefleeaylnyslyvimdralpfigdGlkpvqrrlvyamselgleasakykksarvvGdvlGkyhphGdsavyealvllaqpfsyryplvdGqGnf 102
+l+e+l +++ y+ y+i +ralp+++dGlkpvqrr++yam +l+l + ykksarvvG+v+GkyhphGds++y+a+v+++q + + plvd qGn
MMSYN1_0453 11 PLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNN 108
6889999******************************************************************************************* PP
TIGR01062 103 GaiddpksfaamrytesrlskisellleelgkgtvdfrsnfdgtllepkilparlpnlllnGttGiavGmatdipphnlreladaalalidnpkagld 200
G+id+ +s+aamryte+rl+kis+llle+l+k+tv f +nfd++++ep++lp+ +pn+l+nG+tGia G at++pphnl e+ da + +i np+ ++d
MMSYN1_0453 109 GSIDG-DSAAAMRYTEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEIIDASISIIKNPNITID 205
*****.******************************************************************************************** PP
TIGR01062 201 dvleivkGpdfpteaeiidkkeeirkiyetGrGsvrvrarwkkedgeivisalpyqvskskvieqiaiqlkdkklplvedirdesdhediirvvivpr 298
++l+ivkGpdfpt+a ii++k+ ir+++ tG+G v + ++w++e+ +iv+ ++py+v k ++++i + + +++irde+d+ + +r+vi+
MMSYN1_0453 206 QILKIVKGPDFPTGA-IIQNKQGIREAFLTGKGKVIISSKWHQEKNNIVVDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDR-KGLRIVIELN 301
*************98.6788999************************************************999989********76.578****975 PP
TIGR01062 299 snrvdtdavmeslfaltdleksyrlnlnviGldnkpavknlleilqeflvfrrdivirrltyrlekvlkrleileglliaflnldevieiireed... 393
++ + ++v + lf+ t l sy+ n n+i +d++p+ +l++i++ ++ + +++ i+r+++ l+k rlei++gl+ a ldevi++ir+ +
MMSYN1_0453 302 -EKANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNLNKANLRLEIVNGLIKALSILDEVIKVIRKSEnri 397
.5789*******************99.9999*************************************************************877222 PP
TIGR01062 394 epkailmerfklseiqaeailnlrlrslakleekkikdeqselekeraqlekilkserklnqlvkkeikadakkygdarrssleereeakavsesdli 491
+ +l++ f+++ +q ai+++rl +l+ + +k+ e+ el + ++ ++il+++ l + + +++++k++g +r+s++e+ e v ++++i
MMSYN1_0453 398 DAINNLVKTFNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVI 495
45567999*****************************************************99999******************************** PP
TIGR01062 492 pkepvtiilskmGwvrsakGhdi...dlkslkykaGdsekaavkgksndkvviidskGrsyaldalslssa..rgqGepltgkllldiGatienilve 584
++ + + +sk G+++ + + +l+s+ k d + + d++++++ + +y++ +++++ + qG + + ++ +ti n ++
MMSYN1_0453 496 IEKEINLWISKDGYIKVIDNNILnknELSSFGKKPNDMWISQGVCSNLDHLILVSDQANYYSIPLYKIANSkwKDQGVHINSVATTQPNETIINAFII 593
*****************99865511156667778899998888888899************9987777655116788878777788888787766655 PP
TIGR01062 585 se....dqklllasdaGkGflvkfndliar..nkaGkalislpenakvlaplvveddsdlvvaiteagrllvfpvddlpelsk.GkGnklirikaan. 674
+e q+lll s+ G + dl ++ nk +++++ ++ + + + + +++ it+ g + ++++d+p+ s kG+k ++k
MMSYN1_0453 594 KEfinsTQHLLLVSKNGLIKRTQISDLETKifNK-SFKIMKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTiSKGVKAANLKDDYi 690
4333338********9998888888987773244.4569****************************************8775378888888874321 PP
TIGR01062 675 .akdreellldlkvlskqds 693
++ + + d++++++++
MMSYN1_0453 691 iSALSLDNNKDVLIFTNKNN 710
12223344445555544443 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (898 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 302 (0.0672906); expected 89.8 (0.02)
Passed bias filter: 71 (0.01582); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.21
# Mc/sec: 6140.79
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0453 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0475 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0475.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0475/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0475 [L=318]
Description: L-LDH-NAD: L-lactate dehydrogenase 5=Equivalog Metabolic process
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5e-119 395.0 0.1 5.8e-119 394.8 0.1 1.0 1 TIGR01771 L-LDH-NAD: L-lactate dehydrogenase
3.2e-62 208.4 0.7 3.8e-62 208.2 0.7 1.0 1 TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent
6.1e-21 73.0 0.7 7.7e-20 69.3 0.7 2.0 1 TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-depende
1.6e-15 54.9 0.0 2.1e-15 54.5 0.0 1.2 1 TIGR01759 MalateDH-SF1: malate dehydrogenase
8.5e-10 36.2 0.0 1.1e-09 35.9 0.0 1.1 1 TIGR01756 LDH_protist: lactate dehydrogenase
2.9e-09 34.8 0.0 3.1e-09 34.7 0.0 1.2 1 TIGR01758 MDH_euk_cyt: malate dehydrogenase, NAD-dependent
6.2e-07 26.4 0.0 8e-07 26.0 0.0 1.1 1 TIGR01757 Malate-DH_plant: malate dehydrogenase, NADP-depend
Domain annotation for each model (and alignments):
>> TIGR01771 L-LDH-NAD: L-lactate dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 394.8 0.1 9e-122 5.8e-119 1 298 [. 10 307 .. 10 308 .. 0.98
Alignments for each domain:
== domain 1 score: 394.8 bits; conditional E-value: 9e-122
TIGR01771 1 iiGagaVGssvafalltqgladelvliDinedkaegealdlsdaasflksk.vkvkagdyedlkdadlvvitaGaeqkpgetRlelveknvkilksiv 97
+iGagaVG+s+++a+++qg+a+++vliD ++ aeg+aldlsd+ ++++++ +++kag+yed+kdad+vvitaG++qkpgetRle+v+ n++i+k+i+
MMSYN1_0475 10 LIGAGAVGTSFLYAAINQGIAEHYVLIDAFPQPAEGNALDLSDTLAVIPHSfSSIKAGTYEDCKDADVVVITAGRPQKPGETRLEMVAGNAEIMKNIA 107
79**********************************************998799******************************************** PP
TIGR01771 98 kevvksgfdgillvvsNPvDiltyvvlklsglpkerviGsGtvLdtaRlrrllaeklevdpksvhayvlGEHGdsevavwssakiagvplkelleeke 195
+ev+ksgfdgi++++sNPvD++t+v++k++g+++++viGsGt+Ld+aRlrrl+++kl+v+p+sv+ayv GEHGds+va+ws+a+i g p+ ++++
MMSYN1_0475 108 TEVKKSGFDGITVIASNPVDVITHVYQKVTGFDPHKVIGSGTTLDSARLRRLVGQKLNVKPESVQAYVAGEHGDSSVAIWSQANIMGRPILDYVKCGC 205
**********************************************************************************************9776 PP
TIGR01771 196 kekekelkeiekevrdaayeiiekKgaTsygiglavariveailkdekrvlpvsallegeygikdvylgvPavlgknGveeilelkLseeEkeklkks 293
+ ++l++i+k+++d ay+ii+ K+aT+ygig+++++iv+a+l+dek+ l v+a l+gey k++y+gvPa++g+nG+e+i+e +L++eE+ek++ks
MMSYN1_0475 206 L-TLEDLDQIQKDTVDMAYKIINLKRATFYGIGACLTKIVNAVLRDEKSTLMVGAQLNGEYKNKGLYTGVPAIIGSNGWERIIEWDLTKEEQEKFDKS 302
5.566677****************************************************************************************** PP
TIGR01771 294 aetlk 298
+etl+
MMSYN1_0475 303 CETLH 307
***97 PP
>> TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 208.2 0.7 5.9e-65 3.8e-62 2 303 .. 6 311 .. 5 313 .. 0.95
Alignments for each domain:
== domain 1 score: 208.2 bits; conditional E-value: 5.9e-65
TIGR01763 2 kkisvigagfvgattafllaekela.dvvlldivegvpkgkaldlyeaspvegfdvkvtgtnnyadtansdivvitaglarkpgmsredlvsvnadiv 98
+k+ +igag vg++ + ++ +a + vl+d ++++g aldl ++ v + y+d ++d+vvitag ++kpg +r ++v na+i+
MMSYN1_0475 6 NKVVLIGAGAVGTSFLYAAINQGIAeHYVLIDAFPQPAEGNALDLSDTLAVIPHSFSSIKAGTYEDCKDADVVVITAGRPQKPGETRLEMVAGNAEIM 103
5999********9999999999999779********************999888877788888*********************************** PP
TIGR01763 99 revtseivkysknaiivvvsnpldamtyvaakksglpkervigqagvldaarfrtfiamelgvsvkdvtalvlgghgdemvplvrystvagipveeli 196
+++ +e+ k + i v+ snp+d++t+v k++g+ +vig ld+ar r ++ ++l+v + v+a+v g hgd v + + + g p+ +++
MMSYN1_0475 104 KNIATEVKKSGFDGITVIASNPVDVITHVYQKVTGFDPHKVIGSGTTLDSARLRRLVGQKLNVKPESVQAYVAGEHGDSSVAIWSQANIMGRPILDYV 201
***********************************************************************************************997 PP
TIGR01763 197 .....akeriaeivertrkgggeivnllkqgsayyapaasvvemveailkdkkrvlpvaaylegqyglegiylgvpvilgkngvekileleldeeela 289
+ e +++i + t +i+nl + +++y a+++++v+a+l+d+k l v a l+g+y +g+y gvp i+g+ng e+i+e +l++ee++
MMSYN1_0475 202 kcgclTLEDLDQIQKDTVDMAYKIINLKR--ATFYGIGACLTKIVNAVLRDEKSTLMVGAQLNGEYKNKGLYTGVPAIIGSNGWERIIEWDLTKEEQE 297
2222246899****************854..68***************************************************************** PP
TIGR01763 290 llnksakavkevlk 303
+++ks+++++++++
MMSYN1_0475 298 KFDKSCETLHKTID 311
********999987 PP
>> TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.3 0.7 1.2e-22 7.7e-20 2 306 .. 8 312 .. 7 317 .. 0.75
Alignments for each domain:
== domain 1 score: 69.3 bits; conditional E-value: 1.2e-22
TIGR01772 2 vavlGaaGGiGqsLsLLLkaqpkvseLaLyDike..aaGvaaDLshidtkasvkgfseeeglenalknadvvvipaGvprkPGltrdDLfkvnagivk 97
v ++G aG +G s+ +q ++ L D a G a DLs + + + s + g + k+advvvi+aG p+kPG tr ++++ na i+k
MMSYN1_0475 8 VVLIG-AGAVGTSFLYAAINQGIAEHYVLIDAFPqpAEGNALDLSDTLAVIPHSFSSIKAGTYEDCKDADVVVITAGRPQKPGETRLEMVAGNAEIMK 104
55555.58999999888888999999999998654477*******7655444443344555778889******************************* PP
TIGR01772 98 elvaavaevapkavilvisnPvnslvpivaevlkkkgvydrnkllGv.ttLDivraetfvaeikikdsakvevpviGGhsgetiiPllsqlnllvkle 194
++++ v ++ + ++ snPv+++ ++v +k +d++k++G ttLD+ r ++ v + ++++ +v+ v G h ++ + + sq n + +
MMSYN1_0475 105 NIATEVKKSGFDGITVIASNPVDVI----THVYQKVTGFDPHKVIGSgTTLDSARLRRLVGQKLNVKPESVQAYVAGEHGDSS-VAIWSQANIMGRPI 197
*********************9865....567788999********6599**************************9998766.68999999876544 PP
TIGR01772 195 edqle..kl....ikrvqvaGdevvkakaGaGsatL.smaeagakfalslvealkgeeesvvelayvekdaeeeaeffaiPlvlgkkgvedrkviekl 285
d ++ l ++++q+ ++ at+ ++ +k+++++++ +e+ +++ a ++ + +++ + +P ++g++g e +l
MMSYN1_0475 198 LDYVKcgCLtledLDQIQKDTVDMAYKIINLKRATFyGIGACLTKIVNAVLR---DEKSTLMVGAQLNGEYKNKGLYTGVPAIIGSNGWERIIE-WDL 291
4333211221111245555444443323333344441455555566665554...455678888888888899999999999999999875543.478 PP
TIGR01772 286 sseeekllekaveelkkniek 306
+ee++ +k e+l+k i+
MMSYN1_0475 292 TKEEQEKFDKSCETLHKTIDS 312
888999999999999998875 PP
>> TIGR01759 MalateDH-SF1: malate dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 54.5 0.0 3.3e-18 2.1e-15 34 322 .. 28 308 .. 4 313 .. 0.81
Alignments for each domain:
== domain 1 score: 54.5 bits; conditional E-value: 3.3e-18
TIGR01759 34 pvelklldipealkalegvamELeDcafpllagvv.attdpeeafkdvdvallvgavPrkeGmeRadllskngkifkeqgkalnkvAkkdvkvlvvgn 130
++ + + i++ + +eg a++L+D+ + ++ + + + e +kd+dv ++ ++ P+k+G+ R ++++ n++i k+ + ++k + + v + +n
MMSYN1_0475 28 GIAEHYVLIDAFPQPAEGNALDLSDTLAVIPHSFSsIKAGTYEDCKDADVVVITAGRPQKPGETRLEMVAGNAEIMKNIATEVKKSGFDGITV-IASN 124
55556666777778899999999998766655554155678999*******************************************999887.579* PP
TIGR01759 131 PantnaliaskaapkikkknfsaltrLDhnRalsqlaeklgvkvskvknvviwGnHsntqvpdvtqatvkkeekgkpvkelikdeewleeefvktvqk 228
P+ + + +k + ++k + t LD R + +kl+vk ++v+ ++G H+++ v+ +qa++ g+p+ + +k l+ e + ++qk
MMSYN1_0475 125 PVDVITHVYQKVTGFDPHKVIGSGTTLDSARLRRLVGQKLNVKPESVQA-YVAGEHGDSSVAIWSQANIM----GRPILDYVKCG-CLTLEDLDQIQK 216
************99999999***************************75.89******************....********766.787777888887 PP
TIGR01759 229 Rgaa....vieargassaasaakaaidhvrdwvlgtaegefvsmavlsdgnpYgipegivfsfPvtvkkdgeyeiveglelddfvrekldltakelle 322
++ +i+ + a+ a ++++ + vl e ++ ++ +g +Y ++g++ ++P + ++g +i+e +l++ +ek+d + + l +
MMSYN1_0475 217 DTVDmaykIINLKRAT--FYGIGACLTKIVNAVLRD-EKSTLMVGAQLNG-EYK-NKGLYTGVPAIIGSNGWERIIE-WDLTKEEQEKFDKSCETLHK 308
6554111155555443..344555666666666655.5666667777788.786.7899999999998777666666.99999999999999988876 PP
>> TIGR01756 LDH_protist: lactate dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.9 0.0 1.6e-12 1.1e-09 31 182 .. 44 194 .. 25 253 .. 0.81
Alignments for each domain:
== domain 1 score: 35.9 bits; conditional E-value: 1.6e-12
TIGR01756 31 ealaleledc..afpnlagviatteleeafkdidiaflvasvplkpGevradllkknasifkaiGealseyakptvkvlviGnpvntnalvamlhakk 126
e+ al+l d p+ i + +e+ +kd d+ + a p kpGe r ++++ na i+k+i + + + v+ npv+ + v +
MMSYN1_0475 44 EGNALDLSDTlaVIPHSFSSIKAGTYED-CKDADVVVITAGRPQKPGETRLEMVAGNAEIMKNIATEVKKSGFDGITVI-ASNPVDVITHVYQKVTGF 139
6667777774224677777787777765.9***********************************99999888888765.68****999997655555 PP
TIGR01756 127 lseenfssllmldqnravseiasklkvevdeirdvvvwGnhaesmvadlthaevtk 182
++ s ++ld r + kl+v+ + ++ v G+h++s va ++a+++
MMSYN1_0475 140 DPHKVIGSGTTLDSARLRRLVGQKLNVKPESVQA-YVAGEHGDSSVAIWSQANIMG 194
556778999********************99986.578**********99999865 PP
>> TIGR01758 MDH_euk_cyt: malate dehydrogenase, NAD-dependent
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.7 0.0 4.8e-12 3.1e-09 28 196 .. 26 193 .. 8 309 .. 0.86
Alignments for each domain:
== domain 1 score: 34.7 bits; conditional E-value: 4.8e-12
TIGR01758 28 dqkiilhlldipeavkvleGvkmelvdcafpllkevv.attkaavafedvdvallvGalPrkeGmerkdllsknvkifkeqgealdkyakkdvkvlvv 124
+q i h + i+ + eG ++l d+ + + + + + ++d dv ++ + P+k+G r +++ n++i k+ + ++k + v +
MMSYN1_0475 26 NQGIAEHYVLIDAFPQPAEGNALDLSDTLAVIPHSFSsIKAGTYEDCKDADVVVITAGRPQKPGETRLEMVAGNAEIMKNIATEVKKSGFDGITV-IA 122
5666667777777777778888888886554444443133456799*****************************************99988877.57 PP
TIGR01758 125 gnPantnalvlseyapsipkknvsaltrldhnralaqvaeklgvpvsdvknviiwGnhsstqyPdvnsatvk 196
+nP++ + v ++++ p+k + + t ld r +v +kl+v+ ++v+ + G+h + + ++a++
MMSYN1_0475 123 SNPVDVITHVYQKVTGFDPHKVIGSGTTLDSARLRRLVGQKLNVKPESVQAY-VAGEHGDSSVAIWSQANIM 193
9************************************************875.5799988888777777765 PP
>> TIGR01757 Malate-DH_plant: malate dehydrogenase, NADP-dependent
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.0 0.0 1.3e-09 8e-07 74 250 .. 27 202 .. 2 218 .. 0.88
Alignments for each domain:
== domain 1 score: 26.0 bits; conditional E-value: 1.3e-09
TIGR01757 74 qpialkllgserskealegvameledslypllrev.sigidpyevfedadwalligakprgpgmeradlldingeifadqgkalnevasknvkvlvvg 170
q ia + + + + eg a++l d+l + si ye +dad ++ +p+ pg r +++ n ei+++ ++++ + v+
MMSYN1_0475 27 QGIAEHYVLIDAFPQPAEGNALDLSDTLAVIPHSFsSIKAGTYEDCKDADVVVITAGRPQKPGETRLEMVAGNAEIMKNIATEVKKSGFDGITVI-AS 123
555555555556667789**********998776527999**********************************************999999875.78 PP
TIGR01757 171 npcntnalialknapniprknfhaltrldenrakcqlalksgkfytsvsnvtiwgnhsttqvpdfvnakiggkpakevik 250
np + + + k + p+k + + t ld r + + k + +sv + g+h + v + +a+i g+p+ + +k
MMSYN1_0475 124 NPVDVITHVYQKVTGFDPHKVIGSGTTLDSARLRRLVGQKLNVKPESVQA-YVAGEHGDSSVAIWSQANIMGRPILDYVK 202
**********************************9999999999998865.688********************999887 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (318 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 261 (0.0581551); expected 89.8 (0.02)
Passed bias filter: 196 (0.043672); expected 89.8 (0.02)
Passed Vit filter: 24 (0.00534759); expected 4.5 (0.001)
Passed Fwd filter: 7 (0.00155971); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.21
# Mc/sec: 2174.58
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0475 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0478 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0478.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0478/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0478 [L=194]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.17 9.1 8.9 0.22 8.7 8.9 1.1 1 TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phos
Domain annotation for each model (and alignments):
>> TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.7 8.9 4.8e-05 0.22 6 157 .. 23 174 .. 15 192 .. 0.38
Alignments for each domain:
== domain 1 score: 8.7 bits; conditional E-value: 4.8e-05
TIGR03023 6 lialalllayllrfeseli.....ildaeey.lalllllvllfllilellglyelarrkkslseellkvlsawlltlllllllafllkteeevsrlvl 97
+ ++ +ll+++++f + + ++ ++ ++l+l +++l ++i+ +++ +++++ k +++e++ + ++++l ++ ++l++++l + ++++
MMSYN1_0478 23 I-LAICLLLVFVQFTKAKPlfislTPFISLLvILLILSFTCLLVYIIYRMKILKTSNY-KYIKKEIIYLYTSFSLYIFSFILTVIYLIIALLIKNSES 118
3.33334445555544433545542222222022233333344455556666664444.445555545555555555444444433333333333333 PP
TIGR03023 98 llwlllalllllllrlllrlllkelrkkgvnkrrvvivGagelgerlaealkkeeelglr 157
+ +++++++ ++++ ++l +++++l + k+++++ +++ ++ + +l+ke++ + +
MMSYN1_0478 119 IRIMFYVVISIFFICIILSSIFETLSR---LKEQILLY-KQQYQSQQQLKLNKETDNKKQ 174
333333333333333333333333322...22222222.223333333333333333333 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (194 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 680 (0.151515); expected 89.8 (0.02)
Passed bias filter: 104 (0.0231729); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1266.33
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0478 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0479 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0479.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0479/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0479 [L=548]
Description: peptidase 2=Generic Proteolysis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (548 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 250 (0.0557041); expected 89.8 (0.02)
Passed bias filter: 70 (0.0155971); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 3934.76
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0479 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0481 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0481.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0481/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0481 [L=145]
Description: lipoprotein, putative 1=Unknown Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.7e-06 23.5 0.8 3.7e-06 23.5 0.8 2.0 2 TIGR04547 Mollicu_LP: MOLPALP family lipoprotein
9.6e-06 23.4 9.8 1.2e-05 23.1 9.8 1.1 1 TIGR04527 mycoplas_twoTM: two transmembrane protein
0.0072 12.0 15.3 0.0074 11.9 15.3 1.0 1 TIGR02169 SMC_prok_A: chromosome segregation protein SMC
------ inclusion threshold ------
0.049 10.1 12.5 0.055 9.9 12.5 1.0 1 TIGR03319 RNase_Y: ribonuclease Y
0.074 10.6 18.4 0.1 10.1 18.4 1.4 1 TIGR04211 SH3_and_anchor: SH3 domain protein
0.16 8.7 9.0 0.17 8.7 9.0 1.0 1 TIGR00464 gltX_bact: glutamate--tRNA ligase
0.34 7.1 16.4 0.33 7.1 16.4 1.1 1 TIGR01069 mutS2: MutS2 family protein
2.2 4.0 8.4 1.9 4.3 0.8 1.5 2 TIGR03480 HpnN: hopanoid biosynthesis associated RND transpo
4.3 3.8 8.6 4.5 3.8 8.6 1.1 1 TIGR00437 feoB: ferrous iron transport protein B
Domain annotation for each model (and alignments):
>> TIGR04547 Mollicu_LP: MOLPALP family lipoprotein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.5 0.8 7.5e-09 3.7e-06 1 41 [. 1 45 [. 1 49 [. 0.82
2 ? -1.9 9.2 0.36 1.8e+02 505 566 .. 60 137 .. 35 145 .] 0.50
Alignments for each domain:
== domain 1 score: 23.5 bits; conditional E-value: 7.5e-09
TIGR04547 1 MKKlLaiLgalslvasSsltvvACtkkek....edkseynnslkn 41
MKKl++iL+++ lv++ +t vAC++ + ++ + n sl++
MMSYN1_0481 1 MKKLITILSSFGLVITTGTTAVACKNNQPsslkPTAEDQNTSLTS 45
**************************9988666555555555554 PP
== domain 2 score: -1.9 bits; conditional E-value: 0.36
TIGR04547 505 lfieevkkiaefllskilekilkkNlfksLYsGdff.......keisklikkl.........iekladkiknsvdeif 566
+ eev+ki +l + + + + k+l k++ +G+++ ++i++ ++kl k+++ ik+ ++ +
MMSYN1_0481 60 NKEEEVTKIKGQLEKLKESEQKAKDLLKQIEEGNKKakeatdqEKIKNELEKLnaqkpevekALKQIEEIKKGLEAKL 137
344555555555555555555555666666666666666655555555555554444443333333333333333333 PP
>> TIGR04527 mycoplas_twoTM: two transmembrane protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.1 9.8 2.4e-08 1.2e-05 21 139 .. 11 132 .. 4 144 .. 0.79
Alignments for each domain:
== domain 1 score: 23.1 bits; conditional E-value: 2.4e-08
TIGR04527 21 vgallgaGvvaltfkeeisnlyk.ngvnsisslleeikki.lnkinsinteiakiennlnslktelnktkenvekvekeleel..ssianntedsikk 114
+g++++ G +a+ k++ + +k ++ ++++sl+++ ++ l++ si+++ ++++++ ++l+ +l+++ ++ ++++k++ee + ++ + +++ik+
MMSYN1_0481 11 FGLVITTGTTAVACKNNQPSSLKpTAEDQNTSLTSTPENGeLSSTGSIQNKEEEVTKIKGQLE-KLKESEQKAKDLLKQIEEGnkKAKEATDQEKIKN 107
678899999999999988887773566667777766655414555778888888888888875.588899999999999999877777888899**** PP
TIGR04527 115 kleelegtlrkinnsviqvdkfsdn 139
+le+l++++ ++++ q++++++
MMSYN1_0481 108 ELEKLNAQKPEVEKALKQIEEIKKG 132
***********************98 PP
>> TIGR02169 SMC_prok_A: chromosome segregation protein SMC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.9 15.3 1.5e-05 0.0074 712 790 .. 58 138 .. 19 145 .] 0.37
Alignments for each domain:
== domain 1 score: 11.9 bits; conditional E-value: 1.5e-05
TIGR02169 712 lsdaekkieeiekeleqleeeeeklkerleeleeklseleeel..eekkeelkeleaeieeleeklaklkealedleaels 790
+++ e+++ +i+ +le+l+e+e+k+k+ l+++ee ++ +e+ e+ k+el++l+a+ e e++l++++e + lea+l+
MMSYN1_0481 58 IQNKEEEVTKIKGQLEKLKESEQKAKDLLKQIEEGNKKAKEATdqEKIKNELEKLNAQKPEVEKALKQIEEIKKGLEAKLK 138
222222222222222222222222222222222222222222100111222222222222222222222222222222222 PP
>> TIGR03319 RNase_Y: ribonuclease Y
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.9 12.5 0.00011 0.055 6 134 .. 11 140 .. 5 145 .] 0.61
Alignments for each domain:
== domain 1 score: 9.9 bits; conditional E-value: 0.00011
TIGR03319 6 valvvglligyllakkiaekkleeaeeeakkiieeakkeaeakkkealleakeevkklreelek..elkerrkel.qklekrlkqkeekldrkkekle 100
+ lv+ + ++++ k+ + ++l+ + e+ ++ ++++ ++ e + + ++ eev+k++ +lek e +++ k+l ++ e+ k+ +e+ d++ k++
MMSYN1_0481 11 FGLVITTGTTAVACKNNQPSSLKPTAEDQNTSLTSTPENGELSSTGSIQNKEEEVTKIKGQLEKlkESEQKAKDLlKQIEEGNKKAKEATDQE--KIK 106
555666666666777777777777777777777788888888888888888889999998888522445555554133344333333333333..466 PP
TIGR03319 101 kkeeelekkekeleekekeleekeeeleellkeq 134
++ e+l+ ++ e+e+ k++ee ++ le +lk+
MMSYN1_0481 107 NELEKLNAQKPEVEKALKQIEEIKKGLEAKLKSL 140
6666777777777777777766666666655543 PP
>> TIGR04211 SH3_and_anchor: SH3 domain protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.1 18.4 0.00021 0.1 75 162 .. 58 144 .. 25 145 .] 0.83
Alignments for each domain:
== domain 1 score: 10.1 bits; conditional E-value: 0.00021
TIGR04211 75 laelqeelaelkeelaelkqelkelkeelekleeekeklekelekikklsenaleleeeneelkeeleelkqenealeaenerlkese 162
+++ +ee++++k +l++lk++ +++k+ l++ ee ++k+ ke + +k+++++++l++++ e++++l+++++ + lea++++l++++
MMSYN1_0481 58 IQNKEEEVTKIKGQLEKLKESEQKAKDLLKQIEEGNKKA-KEATDQEKIKNELEKLNAQKPEVEKALKQIEEIKKGLEAKLKSLENKT 144
677888888999999888888888777777777776665.566677889999999999999999999999999999999999988775 PP
>> TIGR00464 gltX_bact: glutamate--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.7 9.0 0.00034 0.17 347 420 .. 62 137 .. 30 145 .] 0.74
Alignments for each domain:
== domain 1 score: 8.7 bits; conditional E-value: 0.00034
TIGR00464 347 kellkllkerlktlkelaeeiklffedkkevdedakkklekkevkevleklkkklealeelt..aeevesaikeva 420
+e ++ +k +l++lke +++ k ++++ +e +++ak+ + ++++k+ lekl+++ ++e+ ee+++ +++
MMSYN1_0481 62 EEEVTKIKGQLEKLKESEQKAKDLLKQIEEGNKKAKEATDQEKIKNELEKLNAQKPEVEKALkqIEEIKKGLEAKL 137
4567889*******************************9999*********9999988875311344444444444 PP
>> TIGR01069 mutS2: MutS2 family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.1 16.4 0.00067 0.33 521 601 .. 59 139 .. 22 145 .] 0.75
Alignments for each domain:
== domain 1 score: 7.1 bits; conditional E-value: 0.00067
TIGR01069 521 eekekeleekaeelekllkeleklkkeleqkakelkererk.lkkelekeaqealkaakkeveeiirelkekkiekakekka 601
++ke e+ +++ +le +lke e + k+l ++++e +++ ++ + +e+ k+ e+l+a k eve+ +++++e+k+ + + k+
MMSYN1_0481 59 QNKEEEVTKIKGQLE-KLKESEQKAKDLLKQIEEGNKKAKEaTDQEKIKNELEKLNAQKPEVEKALKQIEEIKKGLEAKLKS 139
344445555555555.5788888888888888887766655156777889999****************9999766665554 PP
>> TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.3 0.8 0.0037 1.9 559 624 .. 26 91 .. 14 96 .. 0.87
2 ? 3.8 7.8 0.0051 2.5 568 640 .. 71 143 .. 37 145 .] 0.69
Alignments for each domain:
== domain 1 score: 4.3 bits; conditional E-value: 0.0037
TIGR03480 559 avaeekpapsaeeeaaalrklaaklekalekeekpdakaakkLaeslarllakakaqaatlealqk 624
+ ++++++p ae++ ++l ++ ++ e + + + + ++++k++++l++l +++++++++l+++++
MMSYN1_0481 26 NNQPSSLKPTAEDQNTSLTSTPENGELSSTGSIQNKEEEVTKIKGQLEKLKESEQKAKDLLKQIEE 91
45667778899999999****9999999999999999*************9999999999999876 PP
== domain 2 score: 3.8 bits; conditional E-value: 0.0051
TIGR03480 568 saeeeaaalrklaaklekal.ekeekpdakaakkLaeslarllakakaqaatlealqkallatLpeelerlrda 640
+ e+ ++ +k+ + l++ ++++ +a++ +k++++l++l a++ + +++l++++ ++ ++L+++l++l +
MMSYN1_0481 71 QLEKLKESEQKAKDLLKQIEeGNKKAKEATDQEKIKNELEKLNAQKPEVEKALKQIE-EIKKGLEAKLKSLENK 143
233333334444444555554455666788999*********888888888888876.5789999999999875 PP
>> TIGR00437 feoB: ferrous iron transport protein B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.8 8.6 0.009 4.5 141 219 .. 63 138 .. 33 145 .] 0.64
Alignments for each domain:
== domain 1 score: 3.8 bits; conditional E-value: 0.009
TIGR00437 141 rgieelkkaideekaiklvekkkraieilkeaeslaevkeklkelkqklkkglevleglleeraleiekiekelaevvk 219
+++ ++k ++ ek ++ ++k k+++++++e+++ a++++ +++k++l+k l++ + +e+ ++ie+i+k l++ +k
MMSYN1_0481 63 EEVTKIKGQL--EKLKESEQKAKDLLKQIEEGNKKAKEATDQEKIKNELEK-LNAQKPEVEKALKQIEEIKKGLEAKLK 138
2333333333..477777777888888888888888887777766666633.344455666677777777666555444 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (145 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 777 (0.173128); expected 89.8 (0.02)
Passed bias filter: 234 (0.052139); expected 89.8 (0.02)
Passed Vit filter: 42 (0.00935829); expected 4.5 (0.001)
Passed Fwd filter: 10 (0.00222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 9 [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 905.33
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0481 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0482 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0482.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0482/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0482 [L=54]
Description: S21p: ribosomal protein S21 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-10 38.0 8.8 2.8e-10 37.8 8.8 1.1 1 TIGR00030 S21p: ribosomal protein bS21
Domain annotation for each model (and alignments):
>> TIGR00030 S21p: ribosomal protein bS21
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.8 8.8 6.3e-14 2.8e-10 2 54 .. 3 53 .. 2 54 .] 0.94
Alignments for each domain:
== domain 1 score: 37.8 bits; conditional E-value: 6.3e-14
TIGR00030 2 tVkVkegesidkaLrrfKrklekegilrelkkreyYekPserrrrkekaakkr 54
+V V++ge i+kaL+rf ++ + +e++krey++++ e+r k+k+ +k+
MMSYN1_0482 3 SVIVHDGETIEKALKRFQKVASS--NKAEARKREYHLSKKEKRIYKQKQNRKY 53
79*********************..789****************999999886 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (54 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 319 (0.0710784); expected 89.8 (0.02)
Passed bias filter: 89 (0.0198307); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 369.27
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0482 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0493 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0493.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0493/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0493 [L=449]
Description: putative dipeptidase 2=Generic Proteolysis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.8e-109 363.5 4.4 5.5e-109 363.3 4.4 1.0 1 TIGR01887 dipeptidaselike: putative dipeptidase
4.1e-67 225.0 6.5 6.8e-67 224.2 6.5 1.3 1 TIGR01886 dipeptidase: dipeptidase PepV
1e-34 118.3 2.3 7e-24 82.7 0.0 2.8 2 TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family
2.4e-24 84.0 2.0 4.1e-14 50.3 0.0 2.3 2 TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylas
9.3e-15 52.5 0.2 1.5e-09 35.3 0.0 3.7 3 TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE)
5.2e-14 49.8 0.3 3e-11 40.8 0.0 3.3 3 TIGR03526 selenium_YgeY: putative selenium metabolism hydrol
1.3e-08 32.4 0.1 4.2e-07 27.5 0.0 2.4 2 TIGR01902 dapE-lys-deAc: N-acetyl-ornithine/N-acetyl-lysine
4.8e-08 30.1 0.5 0.0034 14.1 0.0 2.2 2 TIGR01893 aa-his-dipept: Xaa-His dipeptidase
6.7e-07 26.5 0.1 0.0031 14.4 0.0 3.4 3 TIGR01900 dapE-gram_pos: succinyl-diaminopimelate desuccinyl
7e-07 26.2 0.1 7e-06 22.9 0.0 2.2 2 TIGR01880 Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolas
7.6e-05 19.8 0.3 0.097 9.6 0.0 2.3 2 TIGR01883 PepT-like: peptidase T-like protein
0.0052 13.9 0.0 0.37 7.8 0.0 2.9 3 TIGR01891 amidohydrolases: amidohydrolase
Domain annotation for each model (and alignments):
>> TIGR01887 dipeptidaselike: putative dipeptidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 363.3 4.4 1.5e-111 5.5e-109 2 447 .] 14 444 .. 13 444 .. 0.90
Alignments for each domain:
== domain 1 score: 363.3 bits; conditional E-value: 1.5e-111
TIGR01887 2 DelledlkellrikSvkdeeeakeeaPfGegvkkaLekllelakkdgfkt.knldnyagyielgqgeellgilgHlDVVPeGd..gWtsppfeaeikd 96
D+ l++ k++++i+S e++++aP+G++ k++L+++++la+++gf+t k+ +n +g++++g+ge+l il+HlDVVP G+ +W ++pf + i+d
MMSYN1_0493 14 DQALNETKKVVSIPSFL--TEPTADAPYGKACKEVLDYVIDLANNLGFQTyKDKNNKYGFVDYGTGEKLFVILAHLDVVPPGNieQWVTDPFTPIIQD 109
8899*************..******************************94456779*************************888************* PP
TIGR01887 97 gkiygRGvlDdKGPtlaalyalkilkelgl.klkkkirlilGtdEEsgskcidyYfekeeaptlgftPDaefPiiyaEkGivtlevklkektegdvel 193
+k++gRG+ DdKGP++ l+alk lk+ ++ + k kirli+G EE+ + i+ Y++ +++lg+tPD efP++yaEk i++l++ e+t+ ++
MMSYN1_0493 110 NKLIGRGTFDDKGPAMMNLFALKYLKDHNYiSSKYKIRLIFGLTEETTWDSIKTYVNDHGVADLGYTPDGEFPVVYAEKWITNLDIISDEPTD--IQ- 204
*****************************725566**************************************************98777654..44. PP
TIGR01887 194 esikagealnvvPdeakavisgkdleaveqefeafkeekelevelevedkeakitleGksahgsapekGiNavlalakflaelelaeeakafvkflae 291
i +g a+nv+ d +++++g+ ++++ ++ +++ ++++ + +k+ ++Gk+ hgs p G+Na++ lak + e +++ +++ +la+
MMSYN1_0493 205 --ISGGAAYNVICD--TVSYKGP---KIKEIQDYLIKNN-----ITTKIEDDKLIVQGKAGHGSLPWYGVNAATWLAKSMYENNVH---HKITDYLAT 287
..57********99..8899999...5666666777766.....55555667899*************************999955...56899**** PP
TIGR01887 292 klkedtegeklgiklkdeesgeltlnvgviayekeeegklllniRypvtkevetklkellakekgvveveed..klekplyvakddplvqtLlkvYkk 387
+++ d + ++++ +++de +gelt nvg i+ ++++ ++++ln+R pv +++++ + +l+k+ + + + k+ ++lyv++++ l++++++vY++
MMSYN1_0493 288 NVHLDFNLKNVFGDISDE-TGELTQNVGLIEIKNKN-SRIGLNFRIPVFTNPTQIFIPTLTKYLEKINLSLEvkKIDNSLYVHQESDLIKKIMRVYQE 383
***************986.7*************999.9**********99999877666655543333322223789********************* PP
TIGR01887 388 qTgd.eatevvigGgTyarllengVAfGalfpgeedvmHqkdEyieiddllkalaiYaeAi 447
T d +a++++igGgTya++++n+VAfGa f+ e+ +mH+ +Ey++iddl k+l+iY +Ai
MMSYN1_0493 384 VTQDyKAKPIAIGGGTYAKAMPNVVAFGAEFDIENSTMHAYNEYVKIDDLKKMLEIYTKAI 444
***98889999************************************************98 PP
>> TIGR01886 dipeptidase: dipeptidase PepV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 224.2 6.5 1.8e-69 6.8e-67 2 465 .. 3 448 .. 2 449 .] 0.87
Alignments for each domain:
== domain 1 score: 224.2 bits; conditional E-value: 1.8e-69
TIGR01886 2 idfkeevearkdalledleellridseedleqateeapvGkGpvkalkkllkfaerdGftt.knfdnyaGrveygeGdevlGiiGhldvvpaG..eGw 96
id ke++ + d+ l++ ++++ i s l + t++ap+Gk ++ l+ ++ +a+ Gf+t k+ +n G v+yg G++ + i+ hldvvp G e w
MMSYN1_0493 3 IDEKELISKYFDQALNETKKVVSIPSF--LTEPTADAPYGKACKEVLDYVIDLANNLGFQTyKDKNNKYGFVDYGTGEKLFVILAHLDVVPPGniEQW 98
778899999999999999***999997..56778899**********************875789999************************95558* PP
TIGR01886 97 esdpfepeikeGkiyarGasddkGpslaayyalkilkelglklsk.kirfvvGtneetgwadldyylkheeapdfgfspdaefpiinGekGnvtlels 193
+dpf p i++ k+ +rG+ ddkGp++ +alk lk+ ++ sk kir++ G eet+w + y++ + d+g++pd efp++ ek + l
MMSYN1_0493 99 VTDPFTPIIQDNKLIGRGTFDDKGPAMMNLFALKYLKDHNYISSKyKIRLIFGLTEETTWDSIKTYVNDHGVADLGYTPDGEFPVVYAEKWITN--LD 194
****************************************887766********************************************8765..56 PP
TIGR01886 194 fkgdnkgdyvlesfkaGlaenvvpesadavisgaeaealkaalekfvaekakldgdleladekativlvGkgahgaapqkGinaatflalflnqyafa 291
+d+ +d+++ G a nv+ ++ + g+++++++ + +++++ ++ + ++d+ ++ + Gk+ hg+ p G+naat+la + + +
MMSYN1_0493 195 IISDEPTDIQI---SGGAAYNVICDTVS--YKGPKIKEIQ---DYLIKNN--ITTK--IEDD--KLIVQGKAGHGSLPWYGVNAATWLAKSMYENNVH 278
66777888865...5899*****98764..5788888775...3344443..4444..4455..47899********************988776665 PP
TIGR01886 292 egakafikvlaevlhedfyGeklGvafedelmgdlamnagvvdfdeenkeskvllnvrypkGtspeelqkkvlkkvgevvevtls.drleephyvpvs 388
++ + la +h df+ + + de g+l+ n g+++ ++ k+s++ ln+r p t+p ++ l+k e ++ l+ +++++ yv +
MMSYN1_0493 279 HK---ITDYLATNVHLDFNLKNVFGDISDE-TGELTQNVGLIEIKN--KNSRIGLNFRIPVFTNPTQIFIPTLTKYLEKINLSLEvKKIDNSLYVHQE 370
55...556678899****998876666666.699*******98865..8899**************9988877777777777654277999******* PP
TIGR01886 389 dplvatllkvyekhtGk.kGqeviiGGGtyGrllerGvayGamfegepdsmhqanelkelddlikaaaiyaeaiyela 465
l++ +++vy++ t k + iGGGty + + va+Ga f+ e +mh+ ne+ ++ddl k iy++ai l+
MMSYN1_0493 371 SDLIKKIMRVYQEVTQDyKAKPIAIGGGTYAKAMPNVVAFGAEFDIENSTMHAYNEYVKIDDLKKMLEIYTKAIVLLT 448
***********9999753788889**************************************************8776 PP
>> TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.7 0.0 1.9e-26 7e-24 4 153 .. 20 168 .. 17 196 .. 0.85
2 ! 33.6 0.7 1.5e-11 5.6e-09 182 373 .] 245 439 .. 234 439 .. 0.71
Alignments for each domain:
== domain 1 score: 82.7 bits; conditional E-value: 1.9e-26
TIGR01910 4 lkdlisipsv.......nppaeneeeianyikdlLrelgfevdvieiekdrlkklsrivvketgngreksLilngHiDVVpaGdvekWktdPFkpvek 94
+k+++sips +p +++ +e+ +y+ dl ++lgf++ +kd+ +k g+g ek+ ++ +H+DVVp+G++e+W tdPF+p+++
MMSYN1_0493 20 TKKVVSIPSFlteptadAPYGKACKEVLDYVIDLANNLGFQT-----YKDKNNK---YGFVDYGTG-EKLFVILAHLDVVPPGNIEQWVTDPFTPIIQ 108
67777777755555557899999*****************86.....4454442...356678888.99***************************** PP
TIGR01910 95 dgklyGRGatDmKgglvallyAlkalreag.lklegdiilqavvdEEsgeaGtlsllqkg 153
d+kl+GRG+ D Kg + l+Alk l++ + + +++i+l + EE + + ++ ++++
MMSYN1_0493 109 DNKLIGRGTFDDKGPAMMNLFALKYLKDHNyISSKYKIRLIFGLTEETTWDSIKTYVNDH 168
***************************98647899************9888777777665 PP
== domain 2 score: 33.6 bits; conditional E-value: 1.5e-11
TIGR01910 182 kvkvkGkqaHaslpeeGvnAieklakliteleeleeeknakkd...............eeeplkvtinvgvikggdkvnsvpdraelevrvriiPeen 264
k++v+Gk+ H+slp GvnA lak + e + + + + ++e ++ t nvg i+ +k + + ++ + v + P
MMSYN1_0493 245 KLIVQGKAGHGSLPWYGVNAATWLAKSMYENNVHHKITDYLATnvhldfnlknvfgdiSDETGELTQNVGLIEIKNKNSRIGLNFR--IPVFTNPT-- 338
799******************99999876644333322222224577788887776544999999999999999999988764443..33333332.. PP
TIGR01910 265 keevkkeveslvkalsksdevlaeleveveisgpletpddselvkaleavikkvkge.eakvlvssgvtDarflrkagipvivyGPg...eletaHqv 358
+ + +l k l+ +++ lev+ + l++ ++s+l+k++ v+++v + +ak ++ ++ ++ka v+ +G+ e+ t+H++
MMSYN1_0493 339 ----QIFIPTLTKYLE---KINLSLEVKKIDN-SLYVHQESDLIKKIMRVYQEVTQDyKAKPIAIG----GGTYAKAMPNVVAFGAEfdiENSTMHAY 424
....334444444444...4446666654333.79******************9885144444455....5567777777899**86555899***** PP
TIGR01910 359 nEyisieelvesikv 373
nEy++i +l+++ ++
MMSYN1_0493 425 NEYVKIDDLKKMLEI 439
**********99876 PP
>> TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 50.3 0.0 1.1e-16 4.1e-14 21 128 .. 46 152 .. 21 166 .. 0.76
2 ! 31.5 2.0 5.9e-11 2.2e-08 212 368 .. 287 445 .. 225 447 .. 0.70
Alignments for each domain:
== domain 1 score: 50.3 bits; conditional E-value: 1.1e-16
TIGR01246 21 aqeliaerLkklgfeieilefedtknlwatrgteepvlvfaGhtDvvPaGelekWssdpfepeerdGklygrGaaDmkgslaafvvaaerfvkknadh 118
+++++++ ++lgf++ + ++ k ++ gt+e+ +v+ h DvvP G++e+W +dpf+p ++d kl grG+ D kg + a +++k++
MMSYN1_0493 46 VLDYVIDLANNLGFQTYKD--KNNKYGFVDYGTGEKLFVILAHLDVVPPGNIEQWVTDPFTPIIQDNKLIGRGTFDDKGPAM-MNLFALKYLKDHNYI 140
4566677777788876543..344566789999*********************************************9854.545556699988643 PP
TIGR01246 119 kG..slsllits 128
++ l+
MMSYN1_0493 141 SSkyKIRLIFGL 152
322255555544 PP
== domain 2 score: 31.5 bits; conditional E-value: 5.9e-11
TIGR01246 212 iaiklD.eGneffppsslqianieagtgasnviPgelkvkfnlrfssevseeel.kskvekildkhkldYelewklsgep.fltkegklikkvaeaie 306
++++lD + +++f + s + +++ + g + + ++ n+r ++ ++ +++k l+k ++ +le k+ ++ ++ +e++likk++ + +
MMSYN1_0493 287 TNVHLDfNLKNVFGDISDETGELTQNVGLIEIKNKNSRIGLNFRIPVFTNPTQIfIPTLTKYLEK--INLSLEVKKIDNSlYVHQESDLIKKIMRVYQ 382
34455523356667777777777777777777778888888888877777666513456677776..7777887776666155669**********99 PP
TIGR01246 307 evlkk.kpelstsGGtsDarfiaklgaevvelGlvndtihkvneavkiedleklsevyeklle 368
ev++ k++ + GG a+ + ++ a e+ + n+t+h+ ne+vki+dl+k+ e+y+k +
MMSYN1_0493 383 EVTQDyKAKPIAIGGGTYAKAMPNVVAFGAEFDIENSTMHAYNEYVKIDDLKKMLEIYTKAIV 445
988652677778888888999999999999999*************************99875 PP
>> TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.3 0.0 4.1e-12 1.5e-09 21 142 .. 47 165 .. 27 171 .. 0.73
2 ? -0.1 0.0 0.24 89 230 243 .. 204 217 .. 202 221 .. 0.88
3 ! 11.2 0.0 8.4e-05 0.032 173 361 .. 245 440 .. 238 444 .. 0.60
Alignments for each domain:
== domain 1 score: 35.3 bits; conditional E-value: 4.1e-12
TIGR01892 21 ieyvedyleelgvavevlpvadgaeksnllaviGpkegagglvlsGhtDvvPvde.aaWtsDpfrLtekdgrLYgrGtaDmkGFlalvLaavpdl... 114
++yv d ++lg+++ d+++k ++ G +g++ +v+ h DvvP + ++W +Dpf+ +d++L grGt D kG + L a++ l
MMSYN1_0493 47 LDYVIDLANNLGFQT----YKDKNNKYGFVD-YG--TGEKLFVILAHLDVVPPGNiEQWVTDPFTPIIQDNKLIGRGTFDDKGPAMMNLFALKYLkdh 137
455555555555544....444445555543.45..78999**********9765379*************************887776666555100 PP
TIGR01892 115 aaakLkkPlhlvlsaDeevglaGakkli 142
+ k + l++ ee++ +k+ +
MMSYN1_0493 138 NYISSKYKIRLIFGLTEETTWDSIKTYV 165
5556688889999999998877777665 PP
== domain 2 score: -0.1 bits; conditional E-value: 0.24
TIGR01892 230 tvkGGkavniiaaa 243
++ GG a n+i+++
MMSYN1_0493 204 QISGGAAYNVICDT 217
799*********97 PP
== domain 3 score: 11.2 bits; conditional E-value: 8.4e-05
TIGR01892 173 kvtvrGreghssrpdrGvsaielaakllar..lvaladklkredleeaFtppyatlniGtvkGGkavni....i.aaaCelvlelRpipGmdpeella 263
k+ v+G+ gh s p Gv+a + +ak + + + + ++++ F+ + +i G +n+ i ++ ++ l++R + +p+++
MMSYN1_0493 245 KLIVQGKAGHGSLPWYGVNAATWLAKSMYEnnVHHKITDYLATNVHLDFNLKNVFGDISDETGELTQNVglieIkNKNSRIGLNFRIPVFTNPTQIFI 342
788*****************999888885411344444444455555666666655666656655555432222145667777777777777766643 PP
TIGR01892 264 .llekiaeevkekapgfevkveelsatpaleleedaelvalleklaGa.aaevvsygteagllqelGieavvlGPG.didqa..hqpdeYveieelkr 356
l+k +e++ ++ evk s++ e + ++++++ ++++ + +a+ + + g ++ + v +G di++ h +eYv+i++lk+
MMSYN1_0493 343 pTLTKYLEKI---NLSLEVKKIDNSLYVHQESDLIKKIMRVYQEVTQDyKAKPI--AIGGGTYAKAMPNVVAFGAEfDIENStmHAYNEYVKIDDLKK 435
1455555544...66667777777777777777777777777777766543333..333344444433446666533665433377778888877777 PP
TIGR01892 357 crall 361
++
MMSYN1_0493 436 MLEIY 440
66665 PP
>> TIGR03526 selenium_YgeY: putative selenium metabolism hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.8 0.0 7.9e-14 3e-11 44 143 .. 55 155 .. 6 213 .. 0.81
2 ? 3.1 0.0 0.022 8.2 184 212 .. 244 272 .. 151 292 .. 0.71
3 ? 2.9 0.0 0.025 9.3 351 388 .. 402 442 .. 350 448 .. 0.64
Alignments for each domain:
== domain 1 score: 40.8 bits; conditional E-value: 7.9e-14
TIGR03526 44 eklgfdkveidemGnvlGyi..GsGeklialdahidtvgigdekqwkfdPyeGaedeeiiyGrGasdqegsiasmvyagkilkdlgll.ddytllvtg 138
++lgf + ++ n G + G Gekl ++ ah+d+v g+ +qw dP+ ++++++GrG+ d++g ++a+k lkd + +y + ++
MMSYN1_0493 55 NNLGFQTYK--DKNNKYGFVdyGTGEKLFVILAHLDVVPPGNIEQWVTDPFTPIIQDNKLIGRGTFDDKGPAMMNLFALKYLKDHNYIsSKYKIRLIF 150
555555443..3445555543399************************************************************99775889875544 PP
TIGR03526 139 tvqee 143
+ ee
MMSYN1_0493 151 GLTEE 155
44444 PP
== domain 2 score: 3.1 bits; conditional E-value: 0.022
TIGR03526 184 ikvevkGvschasaPerGdnaiykmaeil 212
k+ v+G + h+s P G+na +a+ +
MMSYN1_0493 244 DKLIVQGKAGHGSLPWYGVNAATWLAKSM 272
478899*************9987777655 PP
== domain 3 score: 2.9 bits; conditional E-value: 0.025
TIGR03526 351 kagiPviGfGPG...keaqahapnekvakedlvkaaalyaa 388
ka v+ fG ++++ ha ne+v ++dl k ++y+
MMSYN1_0493 402 KAMPNVVAFGAEfdiENSTMHAYNEYVKIDDLKKMLEIYTK 442
44444667776422256789*****************9975 PP
>> TIGR01902 dapE-lys-deAc: N-acetyl-ornithine/N-acetyl-lysine deacetylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.5 0.0 1.1e-09 4.2e-07 17 121 .. 44 161 .. 29 169 .. 0.80
2 ? 2.5 0.2 0.044 17 235 335 .. 342 445 .. 263 449 .] 0.73
Alignments for each domain:
== domain 1 score: 27.5 bits; conditional E-value: 1.1e-09
TIGR01902 17 eevakyleelkkelglkaiideagnv.ilkkgeggkkilLlgHvDtvp.gyie........vkiEgellyGRGavDAKgPlvallfalallkvk..ve 102
+ev +y+ +l ++lg +++ d+ + g g+k ++l+H+D vp g ie + i ++l GRG+ D KgP + lfal lk + +
MMSYN1_0493 44 KEVLDYVIDLANNLGFQTYKDKNNKYgFVDYGTGEKLFVILAHLDVVPpGNIEqwvtdpftPIIQDNKLIGRGTFDDKGPAMMNLFALKYLKDHnyIS 141
57889999***********999998724567899999*********96555542222223267999*************************9753378 PP
TIGR01902 103 kdikvivv.GlveEEssssk 121
++ k++++ Gl+eE + s+
MMSYN1_0493 142 SKYKIRLIfGLTEETTWDSI 161
99999976599999876665 PP
== domain 2 score: 2.5 bits; conditional E-value: 0.044
TIGR01902 235 ikelt...dkktisLeildetpavkvkrsnplvrafvralrkvgikPklvkKtGtsDmniLaprwtvdivaYGPG....dstLdHtpqEkvslaeylk 325
i lt +k + sLe+ + + v++++ l++ ++r ++v ++ K + a+ + ++va+G +st+ H E v+++++ k
MMSYN1_0493 342 IPTLTkylEKINLSLEVKKIDNSLYVHQESDLIKKIMRVYQEVT--QDYKAKPIAIGGGTYAKAM-PNVVAFGAEfdieNSTM-HAYNEYVKIDDLKK 435
33334333688888999888899999999999998888876654..4677777666777788888.68899997433326665.99999999999999 PP
TIGR01902 326 gievlkeale 335
+e++ +a+
MMSYN1_0493 436 MLEIYTKAIV 445
9999999986 PP
>> TIGR01893 aa-his-dipept: Xaa-His dipeptidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.1 0.0 9.1e-06 0.0034 22 142 .. 42 157 .. 36 166 .. 0.75
2 ! 14.0 0.3 9.3e-06 0.0035 302 472 .. 268 442 .. 223 447 .. 0.77
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 9.1e-06
TIGR01893 22 nekevsnflvnwaKklglevkqDevnnvlirkpatkgyenkpaivlqaHlDmvceknedseHdFekDpielivdgdylkargttlGaDnGigvA..ma 117
kev +++++ a +lg+++++D+ n g +k v+ aHlD+v+ n ++ +Dp + i++++ l +rgt D G ++ +a
MMSYN1_0493 42 ACKEVLDYVIDLANNLGFQTYKDKNNKYGF---VDYGTGEKL-FVILAHLDVVPPGNI---EQWVTDPFTPIIQDNKLIGRGTF--DDKGPAMMnlFA 130
6799*******************9886533...334545554.6777*******7665...5799*****************96..677777751134 PP
TIGR01893 118 lailed.nnl.eHpplellltvdEEvg 142
l l+d n + + ++ l++ ++EE++
MMSYN1_0493 131 LKYLKDhNYIsSKYKIRLIFGLTEETT 157
555777333423456888888888876 PP
== domain 2 score: 14.0 bits; conditional E-value: 9.3e-06
TIGR01893 302 ksekvlseeteeklinvlnllpnGvqkvskel....kglvesslnlavvktkenkvkvvlsvRssveskkeev.tekiesvaklagaeleveaaypaW 394
+++++++++++k+ + l + ++ ++++ + +++ e +n++++++k+++ ++ l+ R v ++ +++ + ++++ ++++ +lev+ +++
MMSYN1_0493 268 LAKSMYENNVHHKITDYLATNVHLDFNLKNVFgdisDETGELTQNVGLIEIKNKNSRIGLNFRIPVFTNPTQIfIPTLTKYLEKINLSLEVKKIDNSL 365
56677777777777777776666544444444000134456789*******************9988887776268999999**************** PP
TIGR01893 395 qpkkqskllevlrkvykelfgeepevkviHAGLEcGiisekledldmislGPn..ik..dvHspkErveissvekvydfLvk 472
+++s+l +++ +vy+e++ ++ + k i G G + ++++ +++G + i+ +H+ +E v+i+ ++k+ ++ +k
MMSYN1_0493 366 YVHQESDLIKKIMRVYQEVT-QDYKAKPIAIG--GGTYAKAMPNV--VAFGAEfdIEnsTMHAYNEYVKIDDLKKMLEIYTK 442
******************97.56777777666..78899999987..55555411442258999999999999999887776 PP
>> TIGR01900 dapE-gram_pos: succinyl-diaminopimelate desuccinylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 0.0 8.4e-06 0.0031 43 124 .. 63 155 .. 40 162 .. 0.67
2 ? -0.6 0.0 0.3 1.1e+02 221 236 .. 203 218 .. 197 221 .. 0.86
3 ! 7.3 0.1 0.0012 0.46 170 346 .. 246 440 .. 242 444 .. 0.64
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 8.4e-06
TIGR01900 43 rvgnavvartelgrpsrv.ilaGHlDTVpva.......dnlpsrvedevlygrGavDmKagvAvalalaatl...eetepkvdltlvfYdkEE 124
+ +n+ + g ++ +++ HlD Vp d +++ ++d++l grG+ D K+ + l + l + ++k+ + l+f +EE
MMSYN1_0493 63 KDKNNKYGFVDYGTGEKLfVILAHLDVVPPGnieqwvtDPFTPIIQDNKLIGRGTFDDKGPAMMNLFALKYLkdhNYISSKYKIRLIFGLTEE 155
55555555555665555415889*****95556666667788888**************9887777766777332233455566666655555 PP
== domain 2 score: -0.6 bits; conditional E-value: 0.3
TIGR01900 221 vlieggvakNviPdea 236
++i+gg a Nvi d++
MMSYN1_0493 203 IQISGGAAYNVICDTV 218
789*********9987 PP
== domain 3 score: 7.3 bits; conditional E-value: 0.0012
TIGR01900 170 vtvkGraaHsaRaWlGeNAihkaaevl......erlaayearevevdGlkyreglnavlieggv.akNv....i.PdeaevnvnyRfAPdrsleqa.k 254
+ v+G+a H + +W G NA + +a+ + +++++y a +v++d ++ ++++ + e+g ++Nv i + ++ +n+R + q
MMSYN1_0493 246 LIVQGKAGHGSLPWYGVNAATWLAKSMyennvhHKITDYLATNVHLD-FNLKNVFGDISDETGElTQNVglieIkNKNSRIGLNFRIPVFTNPTQIfI 342
6789***************9887765421111155666666666666.45566666666555532556544332134567777777766555555424 PP
TIGR01900 255 aevrevlegaevelevtdlspaarpgleaplakelvaa...vggeveaKlgWTDVarfsalGvpAvNfGpG...dpalaHkkdEhveveqleevaail 346
++++ le+ +++lev+ ++ ++ e+ l+k++++ v+++ +aK ++++ + v fG+ +++ H +E+v++++l+++++i+
MMSYN1_0493 343 PTLTKYLEKINLSLEVKKIDNSLYVHQESDLIKKIMRVyqeVTQDYKAKPIAIGGGTYAKAMPNVVAFGAEfdiENSTMHAYNEYVKIDDLKKMLEIY 440
66777777777777777777777777777777777766555666677776666667777777777777775333556777777777777777777776 PP
>> TIGR01880 Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.9 0.0 1.9e-08 7e-06 75 162 .. 81 168 .. 35 200 .. 0.81
2 ? 1.0 0.1 0.083 31 337 395 .. 389 444 .. 245 448 .. 0.69
Alignments for each domain:
== domain 1 score: 22.9 bits; conditional E-value: 1.9e-08
TIGR01880 75 illnshldvvPv.fkekWthdPfsafkdeeGeiyarGaqdmkcvgvqyleavrklkasG.akfkrtihlsfvpdeeigGidGmekfaese 162
+++ +hldvvP e+W dPf + ++ ++ rG+ d+k ++ l a++ lk + + k i l f+ ee d ++++++ +
MMSYN1_0493 81 FVILAHLDVVPPgNIEQWVTDPFTPII-QDNKLIGRGTFDDKGPAMMNLFALKYLKDHNyISSKYKIRLIFGLTEETT-WDSIKTYVNDH 168
45669*****86267********9877.567889**********************9986899999******999964.56677777655 PP
== domain 2 score: 1.0 bits; conditional E-value: 0.083
TIGR01880 337 tlkpeilaastdsryiravGvpalgfsPlsntPvllhdhneflkeavflrGieiyekli 395
++kp + ++t ++ + +v +f ++ + +h++ne++k + + +eiy+k i
MMSYN1_0493 389 KAKPIAIGGGTYAKAMPNVVAFGAEFD-IE--NSTMHAYNEYVKIDDLKKMLEIYTKAI 444
455555555555555544433333333.22..234799999999999999999999876 PP
>> TIGR01883 PepT-like: peptidase T-like protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.6 0.0 0.00026 0.097 65 159 .. 81 180 .. 40 188 .. 0.69
2 ! 7.8 0.3 0.00087 0.33 273 355 .. 355 439 .. 339 445 .. 0.84
Alignments for each domain:
== domain 1 score: 9.6 bits; conditional E-value: 0.00026
TIGR01883 65 iffsshvDtvkpgagvepvvedG...ivkskgttiLGa.DDkagvaamleavkvlkeeet..ehgtiefiftvkeesGliGaklldeekitaeygyvL 156
+h+D v+pg+ +e v d i++ + G+ DDk l a+k+lk+ + + +i +if ee+ k++ +++ a+ gy+
MMSYN1_0493 81 FVILAHLDVVPPGN-IEQWVTDPftpIIQDNKLIGRGTfDDKGPAMMNLFALKYLKDHNYisSKYKIRLIFGLTEETTWDSIKTYVNDHGVADLGYTP 177
44568*******98.55556665111444433334455477776666699*******996225668***********999999999988888888887 PP
TIGR01883 157 Dad 159
D +
MMSYN1_0493 178 DGE 180
765 PP
== domain 2 score: 7.8 bits; conditional E-value: 0.00087
TIGR01883 273 eveteliYegfkleeddalveiikkaak..kiglkseeklsgGGsDanvlnekGvptvnLsaGyakvhteeekiaieelvklael 355
e++ i ++ ++++ l++ i + + ++ k++ + gGG+ a + + + +h+ +e++ i++l k+ e+
MMSYN1_0493 355 SLEVKKIDNSLYVHQESDLIKKIMRVYQevTQDYKAKPIAIGGGTYAKAMPNVVAFGAEFDIENSTMHAYNEYVKIDDLKKMLEI 439
5678888888889999999988877776225667888899**********99999999999********************9887 PP
>> TIGR01891 amidohydrolases: amidohydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.4 0.0 0.32 1.2e+02 100 143 .. 129 172 .. 123 176 .. 0.67
2 ? 1.7 0.0 0.07 26 225 244 .. 203 222 .. 196 223 .. 0.89
3 ! 7.8 0.0 0.00098 0.37 166 206 .. 235 275 .. 223 290 .. 0.77
Alignments for each domain:
== domain 1 score: -0.4 bits; conditional E-value: 0.32
TIGR01891 100 gaaillkkladqlleGtvrlifqpaEEgglsGatkmieegvldd 143
a ++lk+++ + + ++rlif EE + + ++++ + d
MMSYN1_0493 129 FALKYLKDHNYISSKYKIRLIFGLTEETTWDSIKTYVNDHGVAD 172
44555555555566779**********98666666666665555 PP
== domain 2 score: 1.7 bits; conditional E-value: 0.07
TIGR01891 225 gvieaGtapNVipdkAslkg 244
++i++G a+NVi d++s kg
MMSYN1_0493 203 IQISGGAAYNVICDTVSYKG 222
6899***********99775 PP
== domain 3 score: 7.8 bits; conditional E-value: 0.00098
TIGR01891 166 gtimaaadkfevtikGkgaHaakPhlgrdaldaaaqlvtal 206
++i+ + ++ + ++Gk++H++ P +g++a + +a+ + +
MMSYN1_0493 235 NNITTKIEDDKLIVQGKAGHGSLPWYGVNAATWLAKSMYEN 275
5556666677899****************998888776654 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (449 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 167 (0.0372103); expected 89.8 (0.02)
Passed bias filter: 98 (0.021836); expected 89.8 (0.02)
Passed Vit filter: 20 (0.00445633); expected 4.5 (0.001)
Passed Fwd filter: 12 (0.0026738); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 12 [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.23
# Mc/sec: 2803.41
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0493 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0494 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0494.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0494/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0494 [L=226]
Description: putative N-acetylmannosamine-6-P epimerase 3=Putative Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.5e-07 26.7 0.2 2.7e-06 24.4 0.2 2.0 2 TIGR00262 trpA: tryptophan synthase, alpha subunit
1.6e-06 25.6 1.1 3.4e-05 21.3 0.0 2.7 3 TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
7.3e-06 23.3 0.1 0.00018 18.7 0.0 2.1 2 TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 fam
7.3e-06 23.7 0.1 0.0004 18.0 0.0 2.1 2 TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, syntha
3e-05 21.7 0.2 0.00035 18.2 0.0 2.3 2 TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribos
0.00015 19.4 1.0 0.0045 14.6 1.0 2.5 1 TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase
0.00054 17.2 0.1 0.0013 16.0 0.0 1.7 2 TIGR00693 thiE: thiamine-phosphate diphosphorylase
0.00077 16.6 0.2 0.009 13.1 0.0 2.2 2 TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family
0.00096 16.7 0.1 0.0018 15.8 0.1 1.5 1 TIGR01306 GMP_reduct_2: guanosine monophosphate reductase
0.0011 16.8 1.6 0.0092 13.8 0.0 2.3 2 TIGR00734 hisAF_rel: hisA/hisF family protein
0.0065 13.3 2.0 0.99 6.1 0.1 2.9 3 TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogena
0.0067 13.7 0.1 0.13 9.5 0.0 2.2 2 TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclas
------ inclusion threshold ------
0.024 11.0 0.0 0.039 10.3 0.0 1.3 1 TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE famil
Domain annotation for each model (and alignments):
>> TIGR00262 trpA: tryptophan synthase, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.2 0.1 0.19 64 185 231 .. 47 64 .. 27 91 .. 0.59
2 ! 24.4 0.2 7.9e-09 2.7e-06 180 232 .. 162 213 .. 49 224 .. 0.84
Alignments for each domain:
== domain 1 score: 0.2 bits; conditional E-value: 0.19
TIGR00262 185 evkelikkvkalskkPvlvGFGiskkeqvkelkelgadgvivGsAlv 231
+ e ikk+k++ ++P ++
MMSYN1_0494 47 SQVEHIKKIKEVVNVP-----------------------------II 64
2233333333333333.............................33 PP
== domain 2 score: 24.4 bits; conditional E-value: 7.9e-09
TIGR00262 180 erveeevkelikkvkalskkPvlvGFGiskkeqvkelkelgadgvivGsAlvk 232
+++e + ++++k +k++ +kP++ Gi ++q+ke+ +lg +v+vGsA+ +
MMSYN1_0494 162 NNIE-NDYQFLKDLKKVITKPIIAEGGIWTPQQAKEILNLGIHSVVVGSAITR 213
3333.45789****************************************976 PP
>> TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.7 0.1 0.19 65 186 201 .. 49 64 .. 47 80 .. 0.86
2 ? 0.5 0.0 0.23 78 85 126 .. 81 127 .. 78 140 .. 0.77
3 ! 21.3 0.0 9.7e-08 3.4e-05 56 113 .. 161 217 .. 155 223 .. 0.87
Alignments for each domain:
== domain 1 score: 0.7 bits; conditional E-value: 0.19
TIGR03572 186 lelvktvskavkiPvi 201
+e +k++++ v++P+i
MMSYN1_0494 49 VEHIKKIKEVVNVPII 64
6889**********99 PP
== domain 2 score: 0.5 bits; conditional E-value: 0.23
TIGR03572 85 sledvkkllkaGadKvsintaalenpe.....lieeiakkfGsQsvv 126
++++v +l++ +d +++++++ ++p+ li++i +k+ +Q ++
MMSYN1_0494 81 TIKEVDQLVDLKVDIIALDATLRKRPDqdltnLIKTIKTKYPNQLLM 127
67899999999999999999988877433333788888888887665 PP
== domain 3 score: 21.3 bits; conditional E-value: 9.7e-08
TIGR03572 56 keerekllelieklaeevfvPltvgGGiksledvkkllkaGadKvsintaalenpeli 113
++++e++++++++l + + P+ + GGi + +++k++l+ G+ v++ +a++ + +li
MMSYN1_0494 161 HNNIENDYQFLKDLKKVITKPIIAEGGIWTPQQAKEILNLGIHSVVVGSAIT-RLHLI 217
678899****************************************998755.44554 PP
>> TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.7 0.1 0.04 14 179 197 .. 47 65 .. 43 85 .. 0.90
2 ! 18.7 0.0 5.3e-07 0.00018 178 224 .. 165 210 .. 129 225 .. 0.87
Alignments for each domain:
== domain 1 score: 2.7 bits; conditional E-value: 0.04
TIGR00737 179 anwdiiarvkqavkiPVig 197
++ + i+++k+ v++P+ig
MMSYN1_0494 47 SQVEHIKKIKEVVNVPIIG 65
57899************98 PP
== domain 2 score: 18.7 bits; conditional E-value: 5.3e-07
TIGR00737 178 eanwdiiarvkqavkiPVignGDitspedAkamLeetgadgvligRg 224
e ++++++++k+ ++ P+i++G i +p++Ak++L+ + + +v++g +
MMSYN1_0494 165 ENDYQFLKDLKKVITKPIIAEGGIWTPQQAKEILNLG-IHSVVVGSA 210
6789******************************986.889998876 PP
>> TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.8 0.1 0.025 8.5 48 74 .. 41 67 .. 28 95 .. 0.83
2 ! 18.0 0.0 1.1e-06 0.0004 177 232 .. 159 212 .. 100 220 .. 0.83
Alignments for each domain:
== domain 1 score: 3.8 bits; conditional E-value: 0.025
TIGR00343 48 Ggvarmsdpklikeildavsipvmakv 74
+v r+s+ + ik+i + v +p++ +
MMSYN1_0494 41 AKVLRLSQVEHIKKIKEVVNVPIIGLI 67
5899******************98755 PP
== domain 2 score: 18.0 bits; conditional E-value: 1.1e-06
TIGR00343 177 aeakelevlvellkevkkeGklpvvnfaaGGvatpadaallmqlGadGvfvGsGif 232
+ +++e +++lk++kk p++ a GG+ tp +a +++lG + v vGs i
MMSYN1_0494 159 LNHNNIENDYQFLKDLKKVITKPII--AEGGIWTPQQAKEILNLGIHSVVVGSAIT 212
3456999****************97..89************************996 PP
>> TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomera
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.2 0.1 0.16 55 50 75 .. 38 63 .. 18 85 .. 0.89
2 ! 18.2 0.0 1e-06 0.00035 59 109 .. 166 216 .. 158 226 .] 0.69
Alignments for each domain:
== domain 1 score: 1.2 bits; conditional E-value: 0.16
TIGR00007 50 LdgAkegekknlevikkiveelevkv 75
L gAk + ++ e+ikki+e ++v++
MMSYN1_0494 38 LGGAKVLRLSQVEHIKKIKEVVNVPI 63
77899999999999999999999887 PP
== domain 2 score: 18.2 bits; conditional E-value: 1e-06
TIGR00007 59 knlevikkiveelevkvqvGGGiRsleavekllelgverviigtaavenpe 109
++ +++k++++ +++++ GGi + ++++++l+lg++ v++g+a +
MMSYN1_0494 166 NDYQFLKDLKKVITKPIIAEGGIWTPQQAKEILNLGIHSVVVGSAITRLHL 216
455677788888888888888888888888888888888888865444443 PP
>> TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 1.0 1.3e-05 0.0045 99 191 .. 120 213 .. 40 217 .. 0.70
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 1.3e-05
TIGR03128 99 kkegkevlvDlinvkDkakrakelkelGvdiiavHt.GlDeqakgkkpledLetllkvvkevkv..avA.GGi.kldtikeviklgadvvivGsaitk 191
k ++ +++D n++D ++++lG d+i + G+ + +++ +e+ + lk k+v + +A GGi + + +ke+++lg+ v+vGsait+
MMSYN1_0494 120 KYPNQLLMADCSNINDA----INAQNLGFDLISTTLrGYTKDTLNHNNIENDYQFLKDLKKVITkpIIAeGGIwTPQQAKEILNLGIHSVVVGSAITR 213
34477788888888764....467889999998754388777777777776444444444433333333367647899******************97 PP
>> TIGR00693 thiE: thiamine-phosphate diphosphorylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.4 0.0 1.7 5.7e+02 140 157 .. 48 64 .. 40 73 .. 0.56
2 ! 16.0 0.0 3.7e-06 0.0013 136 186 .. 163 213 .. 108 220 .. 0.74
Alignments for each domain:
== domain 1 score: -2.4 bits; conditional E-value: 1.7
TIGR00693 140 glelleeiaakaleipvv 157
++e++++i++ + ++p++
MMSYN1_0494 48 QVEHIKKIKEVV-NVPII 64
455555555444.35543 PP
== domain 2 score: 16.0 bits; conditional E-value: 3.7e-06
TIGR00693 136 kavvglelleeiaakaleipvvaIGGi.tlenveevlkagvdgvavvsaima 186
+ + ++l+ +++ +++p++a GGi t+++++e+l+ g+++v+v sai++
MMSYN1_0494 163 NIENDYQFLKDLKKV-ITKPIIAEGGIwTPQQAKEILNLGIHSVVVGSAITR 213
333457889999855.57*********7789*******************96 PP
>> TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.0 0.2 0.12 43 223 240 .. 49 66 .. 28 79 .. 0.74
2 ! 13.1 0.0 2.6e-05 0.009 227 269 .. 172 214 .. 147 226 .] 0.88
Alignments for each domain:
== domain 1 score: 1.0 bits; conditional E-value: 0.12
TIGR01037 223 vrvvydlykkldiPiiGv 240
v + ++ + +++PiiG+
MMSYN1_0494 49 VEHIKKIKEVVNVPIIGL 66
455666777788888775 PP
== domain 2 score: 13.1 bits; conditional E-value: 2.6e-05
TIGR01037 227 ydlykkldiPiiGvGGitsaeDalefllaGasavqvGtavyye 269
dl k + Pii GGi + + a e l G +v vG+a+
MMSYN1_0494 172 KDLKKVITKPIIAEGGIWTPQQAKEILNLGIHSVVVGSAITRL 214
58999999*******************************9755 PP
>> TIGR01306 GMP_reduct_2: guanosine monophosphate reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.8 0.1 5.2e-06 0.0018 110 230 .. 94 211 .. 13 216 .. 0.73
Alignments for each domain:
== domain 1 score: 15.8 bits; conditional E-value: 5.2e-06
TIGR01306 110 eyitidia..hghsnsviemikhiktelpdsfviagnvgtpeavrelenagadatkvgigpgkvcitkiktgfgtggwqlaalrlcakaarkpiiadg 205
+ i++d + + + + ++ik ikt+ p+ +++a +a+ +n g d + tk + l+ k +kpiia+g
MMSYN1_0494 94 DIIALDATlrKRPDQDLTNLIKTIKTKYPNQLLMADCSNINDAIN-AQNLGFDLISTTLR----GYTKDTLNHNNIENDYQFLKDLKKVITKPIIAEG 186
4555554411233466889999********999999988888885.68999997665552....34444444444555556689999*********** PP
TIGR01306 206 girthgdiaksirfgasmvmigslf 230
gi t + + +g v++gs +
MMSYN1_0494 187 GIWTPQQAKEILNLGIHSVVVGSAI 211
****999888899*********965 PP
>> TIGR00734 hisAF_rel: hisA/hisF family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 1.0 0.15 51 115 162 .. 49 100 .. 2 152 .. 0.62
2 ! 13.8 0.0 2.7e-05 0.0092 172 217 .. 167 212 .. 160 216 .. 0.88
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.15
TIGR00734 115 tellkeilivvsl...dfkekrLdasslees..leevrdllnsyeldlivLdi 162
+e k+i+ vv + + +k+ d+s+ +++ ++ev d+l ++d+i Ld
MMSYN1_0494 49 VEHIKKIKEVVNVpiiGLIKKHYDNSEVFITptIKEV-DQLVDLKVDIIALDA 100
4444444444443111445566666666654213444.444447777777764 PP
== domain 2 score: 13.8 bits; conditional E-value: 2.7e-05
TIGR00734 172 nlellkkvlelserpvilGGGikgvedlellkelGvsavLvatavh 217
+ + lk +++ + +p+i GGi ++ + +lG+++v+v+ a+
MMSYN1_0494 167 DYQFLKDLKKVITKPIIAEGGIWTPQQAKEILNLGIHSVVVGSAIT 212
667899999*************98888888888***********96 PP
>> TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.9 0.1 0.11 38 236 270 .. 32 65 .. 10 78 .. 0.82
2 ! 6.1 0.1 0.0029 0.99 226 282 .. 82 142 .. 76 149 .. 0.78
3 ! 4.5 0.0 0.0089 3.1 258 357 .. 173 209 .. 157 213 .. 0.55
Alignments for each domain:
== domain 1 score: 0.9 bits; conditional E-value: 0.11
TIGR01302 236 gvdvlviDssqgnsikvlesikkikktypdldvia 270
+ +lv+ ++ + ++e ikkik+ +++ +i+
MMSYN1_0494 32 MCYALVLGGAKVLRLSQVEHIKKIKEV-VNVPIIG 65
566788888888999999999999998.8888885 PP
== domain 2 score: 6.1 bits; conditional E-value: 0.0029
TIGR01302 226 keRveelveagvdvlviDssqgn..sikvlesikkikktypdldvia..Gnvataeaakal 282
++ v++lv+ +vd++ +D++ + + + ik+ik +yp+ ++a n+ a +a++l
MMSYN1_0494 82 IKEVDQLVDLKVDIIALDATLRKrpDQDLTNLIKTIKTKYPNQLLMAdcSNINDAINAQNL 142
56799*************98655115667899*********97777633477766666665 PP
== domain 3 score: 4.5 bits; conditional E-value: 0.0089
TIGR01302 258 kikktypdldviaGnvataeaakalidagadglkvGiGsGsiCttrevaavGvpqitAvakvaeaaaksgipviADGGirysGdivKalalGadavml 355
+kk + p+iA+GGi + l lG + v++
MMSYN1_0494 173 DLKKVIT---------------------------------------------------------------KPIIAEGGIWTPQQAKEILNLGIHSVVV 207
5554433...............................................................3455555555555555555555555555 PP
TIGR01302 356 Gs 357
Gs
MMSYN1_0494 208 GS 209
55 PP
>> TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.2 0.0 0.061 21 188 203 .. 49 64 .. 44 116 .. 0.89
2 ! 9.5 0.0 0.00038 0.13 57 107 .. 162 211 .. 153 223 .. 0.79
Alignments for each domain:
== domain 1 score: 2.2 bits; conditional E-value: 0.061
TIGR00735 188 lellkkvkeavkiPvi 203
+e +kk+ke+v++P+i
MMSYN1_0494 49 VEHIKKIKEVVNVPII 64
4678889999999988 PP
== domain 2 score: 9.5 bits; conditional E-value: 0.00038
TIGR00735 57 ekretmlevvervaekvfiPltvgGGiksiedvkkllraGadkvsintaav 107
++ e + ++++ + + P+ GGi + +++k++l+ G v +++a +
MMSYN1_0494 162 NNIENDYQFLKDLKKVITKPIIAEGGIWTPQQAKEILNLGIHSVVVGSA-I 211
5556677788888999999999999999999999999999999988875.4 PP
>> TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.3 0.0 0.00011 0.039 267 310 .. 164 205 .. 120 216 .. 0.66
Alignments for each domain:
== domain 1 score: 10.3 bits; conditional E-value: 0.00011
TIGR03997 267 vppgyaaelaaaireavdlPvvavGrikdpaqaervlaeGqadl 310
++++y +++++ P++a+G i +p+qa+++l+ G +
MMSYN1_0494 164 IENDYQ--FLKDLKKVITKPIIAEGGIWTPQQAKEILNLGIHSV 205
445553..3457899***********************995544 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (226 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 250 (0.0557041); expected 89.8 (0.02)
Passed bias filter: 144 (0.0320856); expected 89.8 (0.02)
Passed Vit filter: 29 (0.00646168); expected 4.5 (0.001)
Passed Fwd filter: 13 (0.00289661); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 13 [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.22
# Mc/sec: 1475.21
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0494 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0495 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0495.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0495/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0495 [L=291]
Description: ROK family protein 2=Generic Regulation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.6e-29 100.0 1.9 3.4e-21 73.8 4.4 2.0 2 TIGR00744 ROK_glcA_fam: ROK family protein (putative glucoki
------ inclusion threshold ------
0.013 13.5 0.0 0.023 12.7 0.0 1.4 1 TIGR04072 rSAM_ladder_B12: lipid biosynthesis B12-binding/ra
Domain annotation for each model (and alignments):
>> TIGR00744 ROK_glcA_fam: ROK family protein (putative glucokinase)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 73.8 4.4 1.5e-24 3.4e-21 2 161 .. 9 164 .. 8 171 .. 0.88
2 ! 22.0 0.0 8.4e-09 1.9e-05 211 309 .. 188 285 .. 167 291 .] 0.84
Alignments for each domain:
== domain 1 score: 73.8 bits; conditional E-value: 1.5e-24
TIGR00744 2 gvdiGGttiklgvvdeegnilskwkvptdttdetivvaiakivdskldeldksdheivaiGi.GapGpvnleagevyeavnldWkqealkekleaevg 98
++diGGt ik g+++e++n l ++ t ++ ++++i+d + l + i + G+ G +++++ ++ n+d k + + +
MMSYN1_0495 9 SIDIGGTSIKYGIFNENLNPLFINSITTIPIKD---ELLKQIIDIIISSLPLDGISIATAGVvDKNGVIKFANQNIKDYSNFDLKTYIKNFLITYKNS 103
79*******************999998866555...567888888888999999999999962578999***************98865556677899 PP
TIGR00744 99 lPvvvendanvaalGekkkGaGdGakdvilitlGtGlGGGiiangeilrGhnGagaeiGhirv 161
+P+ + ndan a++ e+ + k+ +++tlGtG+G Gii nge+ nG ++eiG i+
MMSYN1_0495 104 VPIEIINDANSASYIEYVN--NKTIKNSVTLTLGTGVGMGIILNGELFLANNGIAGEIGAIKN 164
****************986..6899**********************************9975 PP
== domain 2 score: 22.0 bits; conditional E-value: 8.4e-09
TIGR00744 211 kvsakdvfeaakegdevavevveevakylglvladlasllnPskivlGGGlsdaGelllekikkeykkllftrarqaadivaaqlGndaGvvGaadla 308
+ ++ d+ +++d e+ +++ k + l++ ++ l P+ i lGGG+s e +le i++++kk + + +i + nd+G++G +l
MMSYN1_0495 188 HYNSNDIWTLYNKNDFYKTEIENYLDKLVNLLC-TISYILSPQIIYLGGGFSYCSEQILELINNKFKKEFVFYDINPINIKYTSNKNDSGLLGVLHLL 284
556778888888899999999999999988776.58999*****************************9999999999***************98876 PP
TIGR00744 309 k 309
MMSYN1_0495 285 V 285
5 PP
>> TIGR04072 rSAM_ladder_B12: lipid biosynthesis B12-binding/radical SAM protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.7 0.0 1e-05 0.023 33 117 .. 163 251 .. 151 254 .. 0.81
Alignments for each domain:
== domain 1 score: 12.7 bits; conditional E-value: 1e-05
TIGR04072 33 kqfD.lLaseeslealekeleefkpdviglsirniDnvdslssek...yleeakeivellrelskapvvvGGpafsllPeelLeylgaD 117
k+fD ++ ++ s ++ k+l++ k+ + + i + n + + +++ yl+++ +++ ++ + + +++ G +fs e++Le+++
MMSYN1_0495 163 KNFDqYIDTDLSWTTFIKKLNQNKYHYNSNDIWTLYNKNDFYKTEienYLDKLVNLLCTISYILSPQIIYLGGGFSYCSEQILELINNK 251
5666456677788888999999999999999988888888777664558888888888889899999**99*************98765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (291 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 183 (0.0407754); expected 89.8 (0.02)
Passed bias filter: 69 (0.0153743); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.19
# Mc/sec: 2199.41
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0495 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0499 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0499.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0499/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0499 [L=93]
Description: L27: ribosomal protein L27 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-39 131.0 3.6 3.3e-39 130.8 3.6 1.0 1 TIGR00062 L27: ribosomal protein bL27
Domain annotation for each model (and alignments):
>> TIGR00062 L27: ribosomal protein bL27
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 130.8 3.6 7.3e-43 3.3e-39 1 82 [. 10 90 .. 10 91 .. 0.96
Alignments for each domain:
== domain 1 score: 130.8 bits; conditional E-value: 7.3e-43
TIGR00062 1 maskkgvGstkngrDseakrLGvkkadgqsvkaGeiivrqrGtklypGenvglGkDdtlfalsdGvvkfekkgkkkrkkvsv 82
+askkgvGstkngrDse+krLG+kk+dgq+ +aG+ii+rqrGtk++pG nvg+G Ddtlfal+ G+vk+ek+g k+r++vsv
MMSYN1_0499 10 FASKKGVGSTKNGRDSESKRLGAKKSDGQFTNAGSIIYRQRGTKIHPGLNVGRGGDDTLFALIAGTVKYEKFG-KNRTRVSV 90
79**********************************************************************5.67888877 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (93 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 50 (0.0111408); expected 89.8 (0.02)
Passed bias filter: 47 (0.0104724); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 702.91
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0499 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0500 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0500.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0500/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0500 [L=87]
Description: PF04327 family protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (87 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 314 (0.0699643); expected 89.8 (0.02)
Passed bias filter: 103 (0.0229501); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 657.56
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0500 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0501 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0501.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0501/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0501 [L=100]
Description: L21: ribosomal protein L21 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.6e-33 110.6 4.5 1.1e-32 110.4 4.5 1.0 1 TIGR00061 L21: ribosomal protein bL21
Domain annotation for each model (and alignments):
>> TIGR00061 L21: ribosomal protein bL21
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.4 4.5 2.4e-36 1.1e-32 1 101 [] 2 98 .. 2 98 .. 0.98
Alignments for each domain:
== domain 1 score: 110.4 bits; conditional E-value: 2.4e-36
TIGR00061 1 yAivkiggkqykveegetvkiekldaeegeeveldkvLlvkkgdevkiGkPyvegakveaevekegrgkKvkvvkyrrrKksrkkqGhRqeytkvkvk 98
+Ai+k+ggkq kve+g+ ++iek++ e++++v++d++L++ + +iG+P+v gakv ++++k+g++kK+ v++y+++K+++k +GhRq+ytkvk++
MMSYN1_0501 2 FAIIKTGGKQVKVEPGQEIFIEKIKGEVNDKVTFDEILMI----DGQIGTPTVVGAKVLGTIIKQGKAKKIRVIRYHPKKNVNKIYGHRQPYTKVKID 95
7***************************************....789*************************************************** PP
TIGR00061 99 kiv 101
+i+
MMSYN1_0501 96 EIS 98
995 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (100 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 198 (0.0441176); expected 89.8 (0.02)
Passed bias filter: 94 (0.0209447); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 755.81
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0501 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0503 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0503.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0503/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0503 [L=133]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (133 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 238 (0.0530303); expected 89.8 (0.02)
Passed bias filter: 75 (0.0167112); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1005.23
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0503 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0504 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0504.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0504/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0504 [L=295]
Description: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase? 2=Generic rRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.8e-68 226.5 8.6 1.1e-67 226.3 8.6 1.0 1 TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltr
5e-06 23.9 0.2 1.1e-05 22.9 0.2 1.5 1 TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase
1.1e-05 23.1 0.4 2.2e-05 22.1 0.4 1.5 1 TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase
0.0012 16.6 0.2 0.0037 15.0 0.1 1.8 1 TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltran
Domain annotation for each model (and alignments):
>> TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 226.3 8.6 1e-70 1.1e-67 2 271 .. 14 289 .. 13 293 .. 0.93
Alignments for each domain:
== domain 1 score: 226.3 bits; conditional E-value: 1e-70
TIGR00096 2 LyvvatPiGNladiteRalevlqkvevllaEDtRvtkklLqllnidtkkkefidhnefkekeeLlaklesiqnkeialvSDAGtPsisDPGqelvaav 99
+y+++tPiGNl+di+ Ra+++l++v+v+ +EDtR +k lL+ ++i+ + +++++ne + e++ + l++ +n ia++SDAG+P isDP ++++
MMSYN1_0504 14 VYLITTPIGNLEDISLRAIQTLKQVDVICCEDTRTSKVLLDKYQITNNLLSLHKFNENLRIEQIINLLNQNKN--IAIISDAGVPIISDPASYIINQL 109
69*****************************************************************999888..*********************** PP
TIGR00096 100 reani..rvevlpGasAlitaliasGlaedrflfeGFLphKsk.erkqklkkiaee..krtivfyEavHRlletLedlqavlkeervlvlkellklhe 192
+e +i +++ + sA + ali+sG+ d f GFL++K+k +++++l+++ ++ ++ i +yE+vHRl++t++ l+++l +++ +v++++l++ +
MMSYN1_0504 110 KELEIncNITAIGAGSAYLHALISSGFLIDNHYFYGFLKNKNKiSKQNELNQLINQygDSIICLYESVHRLKDTITCLNQLLDKNHKIVIAKELTKIN 207
998862267889999***************************934567899995552377899***********************999999999999 PP
TIGR00096 193 etylgntsqellallket...lkGEfvlvivnekkeeetseseealaleikaLlelelklkkaakilAektqlkkkeLYtla 271
e+++ + ++++ ++++++ lkGEfv+vi+++ + + ++ +++l + i + ++ + klk+a++i+ kt++ k+ LY+l
MMSYN1_0504 208 EEIIYGNINQINQYINSEkfvLKGEFVIVINKKIIDQIINYTDSQLIDLIDQEIKNGYKLKQACEIINLKTKISKNVLYKLY 289
99999999999****998999**********99999999****************************************985 PP
>> TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.9 0.2 9.5e-09 1.1e-05 1 237 [. 14 253 .. 14 265 .. 0.83
Alignments for each domain:
== domain 1 score: 22.9 bits; conditional E-value: 9.5e-09
TIGR01465 1 vvfvGaGPGdpdLitvkgrkllesadvvlyAgsLvneellalarkeaevvdsaalsleeivdllvkaaeegklvvRlh.sGDpsiygalaeqlqalea 97
v+++ + G+ + i++++ + l+++dv+ + ++ ll++ + ++ + + + + ++ +++ +++k ++ + +G p i +++l++
MMSYN1_0504 14 VYLITTPIGNLEDISLRAIQTLKQVDVICCEDTRTSKVLLDKYQITNNLLSLHKFNENLRIEQIINLLNQNKNIAIISdAGVPIISDPASYIINQLKE 111
6777777799999**************************************999999999999999999999999985379999999999999***** PP
TIGR01465 98 lgidyevvPGvsslaaaaaaleaeltlpevsqtvil.tRaegrtpvpekeklaklakh..gatlaiflsvklvdkvvkellegGysedtPvavvyrat 192
l+i+ ++ +++ a +a l+a + + + ++ + + ++++l++l ++ ++ ++++ sv+++++++ l + + ++ ++++ + t
MMSYN1_0504 112 LEINCNI----TAIGAGSAYLHALISSGFLIDNHYFyGFLKNKNKISKQNELNQLINQygDSIICLYESVHRLKDTITCLNQL-LDKNHKIVIAKELT 204
9999986....6777777777777777666655544155566899999999999987643799**************999988.999*********** PP
TIGR01465 193 Wpdekivrgtlkdlaekvreeklkk..ttlilvgealdeklakk..skl 237
+e+i+ g+++++++ +++ek+ + +i++ + + +++++ s+l
MMSYN1_0504 205 KINEEIIYGNINQINQYINSEKFVLkgEFVIVINKKIIDQIINYtdSQL 253
******************9999765114567777666555544333555 PP
>> TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.1 0.4 1.9e-08 2.2e-05 2 210 .. 15 221 .. 14 242 .. 0.79
Alignments for each domain:
== domain 1 score: 22.1 bits; conditional E-value: 1.9e-08
TIGR01466 2 yvvgiGpGaeelitpeakealeeadvivgYktYlk..lvedlledkevvksdmkeEleRaeeAlekakegkeValvssGDpgiyglaalvlellekkk 97
y++ + G+ e+i+ +a + l+++dvi + +t ++ l++++ +++ + + +E R e+ +++ ++ k++a++s D+g+ + + ++++ k
MMSYN1_0504 15 YLITTPIGNLEDISLRAIQTLKQVDVICCEDTRTSkvLLDKYQITNNLLSLHKFNENLRIEQIINLLNQNKNIAIIS--DAGVPIISDPASYIINQLK 110
677777899********************99887621456666667999999************************9..7777777777776666655 PP
TIGR01466 98 aevdievvPGitaasaaaallGaplshDfvvis..lSDlLtPleviekr..lraa..aeadfvialYNplskrrkeqlakaveillelrkadtpvgiv 189
+e+ ita+ a +a l a +s f + + L+ + i k+ l+++ +d +i+lY + +l+ + +l +l +++ ++i+
MMSYN1_0504 111 E---LEINCNITAIGAGSAYLHALISSGFLIDNhyFYGFLKNKNKISKQneLNQLinQYGDSIICLYESVH-----RLKDTITCLNQLLDKNHKIVIA 200
4...667778899999999999999998876443378899999999887223333114689******9876.....6778889999999999****** PP
TIGR01466 190 rnagrekeeveittlkeldee 210
++ + +ee+ ++++++++
MMSYN1_0504 201 KELTKINEEIIYGNINQINQY 221
*********999999888764 PP
>> TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.1 3.3e-06 0.0037 2 231 .. 13 238 .. 12 245 .. 0.76
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 3.3e-06
TIGR01469 2 kvylvGaGPGdpellTlkalrllqeadvvl.yDalvseeilalvkeeaelikvGKragkhsvkQeeinellvelakkgkkVvRLKgGDplvfGRggeE 98
+vyl+ + G+ e + l+a ++l++ dv+ D s+ +l+ + + +l++ K +++ ++Q i +ll ++++ + +G p++ +
MMSYN1_0504 13 TVYLITTPIGNLEDISLRAIQTLKQVDVICcEDTRTSKVLLDKYQITNNLLSLHKFNENLRIEQ--IINLL---NQNKNIAIISDAGVPIISDPASYI 105
699999999*******************972588899999999999999999888777554444..33333...444455556689*****9999988 PP
TIGR01469 99 lealeeagiefevvpGvtsavaaaaaagiPlThrglassvtfvtgheaede.kkevdwealakk..eetlviymgvkklaeiakelieagrsedtpva 193
++ l+e +i+++ +t+ a+ a+++ + + l + f+ +++++ +k+ + ++l ++ ++ + +y v++l++ ++ l + +++ ++
MMSYN1_0504 106 INQLKELEINCN----ITAIGAGSAYLHALISSGFLIDNHYFYGFLKNKNKiSKQNELNQLINQygDSIICLYESVHRLKDTITCLNQL-LDKNHKIV 198
899988888887....5777777788888888887877777777666666644455666655542145666888999999999888776.788999** PP
TIGR01469 194 vvenatlekqrvligtlgelaekvaeekl..ksPaliviG 231
+ ++ t +++ + g+++++++ +++ek+ k +ivi
MMSYN1_0504 199 IAKELTKINEEIIYGNINQINQYINSEKFvlKGEFVIVIN 238
**********************999886411556666665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (295 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 412 (0.0918004); expected 89.8 (0.02)
Passed bias filter: 89 (0.0198307); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 2118.16
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0504 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0505 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0505.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0505/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0505 [L=357]
Description: lipoprotein, putative 2=Generic Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (357 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 434 (0.0967023); expected 89.8 (0.02)
Passed bias filter: 107 (0.0238414); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.19
# Mc/sec: 2698.25
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0505 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0511 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0511.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0511/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0511 [L=207]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (207 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 457 (0.101827); expected 89.8 (0.02)
Passed bias filter: 108 (0.0240642); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1564.53
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0511 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0512 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0512.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0512/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0512 [L=312]
Description: plsC 3=Putative Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-29 99.9 0.2 2e-29 99.9 0.2 1.8 2 TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltran
Domain annotation for each model (and alignments):
>> TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 99.9 0.2 4.5e-33 2e-29 2 129 .. 83 214 .. 82 215 .. 0.91
2 ? -3.9 1.2 0.58 2.6e+03 70 92 .. 282 304 .. 277 305 .. 0.68
Alignments for each domain:
== domain 1 score: 99.9 bits; conditional E-value: 4.5e-33
TIGR00530 2 lkvevvgkenlpkkkavlvvanHqsnlDiltlsaafa....pplvfiAKkeLkeipflgilllltgavfidRen.kraiasllkaakkllkegravgv 94
++++v g en +k+v+++anHqsn+D+ +l a+ +pl+fiAK+eL + ++ +++l+ +++++R++ + a ++ ++a +++ +r++++
MMSYN1_0512 83 VNIKVEGIENWI-DKGVILAANHQSNIDPAILFAINDfskqQPLAFIAKEELWTSKKFKNFVRLIDCIPLNRKSpRSALEAFKEAKDLIVDYKRSLVI 179
567778888877.8****************999987777889********************************666666777777778899****** PP
TIGR00530 95 FpeGtrskgrkilefKkGalkiAikakvpilPvvl 129
FpeGtrs+++++ f +++lk+A++ +pi+Pv++
MMSYN1_0512 180 FPEGTRSHSQQMNSFQAASLKVAQMSHAPIIPVSI 214
*********************************97 PP
== domain 2 score: -3.9 bits; conditional E-value: 0.58
TIGR00530 70 enkraiasllkaakkllkegrav 92
+++++ + +k+++ ++e++++
MMSYN1_0512 282 KDIKQLKEEEKKQNSKKQEKKSI 304
55677777777777777777765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (312 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 527 (0.117424); expected 89.8 (0.02)
Passed bias filter: 136 (0.030303); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 2240.23
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0512 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0513 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0513.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0513/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0513 [L=110]
Description: acpS 4=Probable Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7e-19 66.2 4.8 2.8e-18 64.2 4.8 1.7 1 TIGR00556 pantethn_trn: phosphopantetheine--protein transfer
1.6e-15 55.5 3.9 2.8e-15 54.7 3.9 1.4 1 TIGR00516 acpS: holo-[acyl-carrier-protein] synthase
Domain annotation for each model (and alignments):
>> TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.2 4.8 1.2e-21 2.8e-18 2 120 .. 2 100 .. 1 107 [. 0.85
Alignments for each domain:
== domain 1 score: 64.2 bits; conditional E-value: 1.2e-21
TIGR00556 2 ikgvGiDiveikriaeqversgkfaervfspkEiealkkskaksrteflagrwaaKEAviKalgkgisgeellfkdievlkdekgkpeleligevakl 99
i +vGiDive kri+ +f+ +v+s +Ei+ +++ +k+++eflagrwa+KEA+iK l ++is ++ die ++++ p +i++ +
MMSYN1_0513 2 INNVGIDIVENKRIKLKK----EFIIKVLSTNEIQTFNTKTKKQKKEFLAGRWAVKEAIIKTLDQAISM---NKIDIEYVNQK---P---VIQNKE-- 84
789***********9877....89********************************************9...55577766665...4...566666.. PP
TIGR00556 100 aeklavvslsvsishekeyat 120
+++ +sishek+ya+
MMSYN1_0513 85 -----LQNILISISHEKKYAI 100
.....6677778888887776 PP
>> TIGR00516 acpS: holo-[acyl-carrier-protein] synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 54.7 3.9 1.3e-18 2.8e-15 1 119 [. 1 104 [. 1 110 [] 0.84
Alignments for each domain:
== domain 1 score: 54.7 bits; conditional E-value: 1.3e-18
TIGR00516 1 ailgiGlDiveiariekvvkrskkrlaervLsdselalykekseksk..flagrfavkeaaskalgtGigkeLsfqdieiskdekgkPllrlslklae 96
+i +G+Dive +ri+ kk ++ +vLs +e++ +++k +k+k flagr+avkea+ k l+ +s+++i+i + kP +++
MMSYN1_0513 1 MINNVGIDIVENKRIK-----LKKEFIIKVLSTNEIQTFNTKTKKQKkeFLAGRWAVKEAIIKTLDQA----ISMNKIDIEY-VNQKP-------VIQ 81
6889**********96.....5788************998877766666**************99866....5889999975.56799.......455 PP
TIGR00516 97 klsvaalhvsiahekeyaiavvv 119
+ +++++ +si+hek+yai +
MMSYN1_0513 82 NKELQNILISISHEKKYAIGIAL 104
66889*************97655 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (110 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 360 (0.0802139); expected 89.8 (0.02)
Passed bias filter: 77 (0.0171569); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 877.58
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0513 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0515 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0515.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0515/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0515 [L=160]
Description: dctD 4=Probable Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.6e-22 75.5 0.0 1.4e-21 75.0 0.0 1.2 1 TIGR02571 ComEB: ComE operon protein 2
9.1e-11 39.5 0.0 8.6e-08 29.7 0.0 2.1 2 TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD
Domain annotation for each model (and alignments):
>> TIGR02571 ComEB: ComE operon protein 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.0 0.0 6.3e-25 1.4e-21 3 136 .. 8 147 .. 6 159 .. 0.75
Alignments for each domain:
== domain 1 score: 75.0 bits; conditional E-value: 6.3e-25
TIGR02571 3 ikwdqyfmaqshllalrstckrlsvgativrd.kriiaggyng...svagevhc.idegcyvvdghcvrtihaemnallqcakfgvsteeaeiyvthf 95
++w++yfm ++ a+rs +vga +v++ ++i+a gyng v+ + ++ +++ hae+na++ ++++yvt f
MMSYN1_0515 8 LSWQHYFMLIAKASAMRSKDPNTQVGAIVVNElQQIVATGYNGfprGVSDDEFPwSKNNEDWLENKYAYVAHAELNAIVSSR---SDLSNCDLYVTLF 102
79****************************98578********3333555554413444455667778899*******9764...5667899****** PP
TIGR02571 96 pclqctksiiqagikkvyyakd.ykndayal...ellekagvelk 136
pc +c+k iiqagik++yya+d y++++ + ++l+ ++++
MMSYN1_0515 103 PCNECAKIIIQAGIKRIYYANDpYHDKKEFIaskKMLDAVNIKYI 147
********************9878876543311134444444433 PP
>> TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.1 0.0 0.00015 0.33 14 37 .. 25 49 .. 15 60 .. 0.81
2 ! 29.7 0.0 3.8e-11 8.6e-08 42 93 .. 77 122 .. 69 144 .. 0.90
Alignments for each domain:
== domain 1 score: 8.1 bits; conditional E-value: 0.00015
TIGR00326 14 tTepNPaVGaVivk.ngeivgegah 37
pN +VGa++v+ ++iv++g+
MMSYN1_0515 25 SKDPNTQVGAIVVNeLQQIVATGYN 49
457***********789*****986 PP
== domain 2 score: 29.7 bits; conditional E-value: 3.8e-11
TIGR00326 42 eaHaEvvAlaqAgekakgatlyVtLEPCsHqGrTpPCaealieaGikkvvvs 93
aHaE++A+ + + +lyVtL PC+ Ca+ +i+aGik++ ++
MMSYN1_0515 77 VAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYA 122
59**************************96......*************886 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (160 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 151 (0.0336453); expected 89.8 (0.02)
Passed bias filter: 104 (0.0231729); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1209.30
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0515 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0516 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0516.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0516/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0516 [L=433]
Description: membrane protein, putative 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (433 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 333 (0.0741979); expected 89.8 (0.02)
Passed bias filter: 78 (0.0173797); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2590.86
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0516 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0517 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0517.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0517/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0517 [L=310]
Description: rluD 3=Putative rRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.8e-86 286.7 5.9 5.8e-86 286.4 5.9 1.0 1 TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
1e-36 124.1 0.6 1.6e-36 123.6 0.6 1.2 1 TIGR01621 RluA-like: pseudouridine synthase Rlu family prote
8.2e-07 26.9 0.5 3.5e-06 24.8 0.5 1.9 1 TIGR00093 TIGR00093: pseudouridine synthase
0.0021 15.4 0.2 0.0043 14.4 0.2 1.5 1 TIGR00478 tly: TlyA family rRNA methyltransferase/putative h
Domain annotation for each model (and alignments):
>> TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 286.4 5.9 5.1e-89 5.8e-86 6 298 .] 13 305 .. 9 305 .. 0.94
Alignments for each domain:
== domain 1 score: 286.4 bits; conditional E-value: 5.1e-89
TIGR00005 6 qrldevlaselk..dlsrskikklieegqVkvnkkkvtanlklkikdgdlvtveveee..eeaevpvedkpldilfeDedilvidKPsglvvhptggy 99
rld++l+++l+ d+srs+i+kli+e++++vn ++++ n ++ +k + ++t++++++ +++ v++ +++ldi+++D+d+lvi+K + + vhp+ +
MMSYN1_0517 13 LRLDKLLVELLTsyDYSRSYIQKLIKEECISVN-NQIITNNNFVVKPNSQITITIKDPilDPNLVKNDEIDLDIIYQDDDLLVINKQNNITVHPSLSN 109
68999999998744689****************.68888889**********9999997677777888888*************************** PP
TIGR00005 100 ekntvlnallahlkeel.....vsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefkskegtvdaplarvenkkglvavak 192
++nt++nalla e l r++ivhR+D++T+Gll+vak++k ++ L+e +k++++ keY a+v+g +k+++g +dap++r++ ++ ++ v++
MMSYN1_0517 110 TNNTIVNALLASDVE-LssingELRPGIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVSGVIKPNKGLIDAPIGRSQIDRKKMSVTA 206
**********99884.44788789************************************************************************** PP
TIGR00005 193 ssgkeavTvfkvlerdekaslvelkllTGRtHQiRVHlqylghplagDplYgnksvkgksleaeaklkrqaLhaselgfthpatgelleleaplpedl 290
++ k+a T f+v+er+ k +lv++++ TGRtHQiRVH++y++hp+++Dp+Yg+k++ e ++ +q+Lha++l+fthp+t++++el +plp+++
MMSYN1_0517 207 KNSKQAITTFEVVERFLKNTLVKCQIQTGRTHQIRVHFNYINHPVLNDPVYGKKHQ-------EFTDFGQYLHAYKLRFTHPITKKEIELISPLPKEF 297
****************************************************9777.......677889***************************** PP
TIGR00005 291 kellealr 298
+++++ lr
MMSYN1_0517 298 DDKIKELR 305
**999885 PP
>> TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 123.6 0.6 1.4e-39 1.6e-36 2 195 .. 83 292 .. 82 305 .. 0.82
Alignments for each domain:
== domain 1 score: 123.6 bits; conditional E-value: 1.4e-39
TIGR01621 2 leilfrhsdfvlinksegisvh...kddgetglleevakqlgvekvy......lvhrldkvtsGilllalnaesaselsrlfaekkikktylalsdkk 90
l+i+++ +d+++ink+++i+vh + ++t + ++a ++ + + +vhr+dk+t+G+l++a+n ++ ls+ f +++i k yla+ +
MMSYN1_0517 83 LDIIYQDDDLLVINKQNNITVHpslSNTNNTIVNALLASDVELSSINgelrpgIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVSGV 180
89********************44335667777788888776655433333349******************************************99 PP
TIGR01621 91 pkkkqGliiGdmeksregawklvrsken..paitrfesvsiaeklrlfilkphtGkthqlrvalkslGsailGdslygk.aee.sd.rtylhafklef 183
k +Gli + +s+ k+ + +n ait fe v k l ++ +tG+thq+rv + + ++l d++ygk +e +d +ylha+kl+f
MMSYN1_0517 181 IKPNKGLIDAPIGRSQIDRKKMSVTAKNskQAITTFEVVERFLKNTLVKCQIQTGRTHQIRVHFNYINHPVLNDPVYGKkHQEfTDfGQYLHAYKLRF 278
99999***********999998776665337***********************************************95333134247********* PP
TIGR01621 184 dy..qnevievvad 195
++ ++ ie++++
MMSYN1_0517 279 THpiTKKEIELISP 292
97334566666654 PP
>> TIGR00093 TIGR00093: pseudouridine synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.8 0.5 3.1e-09 3.5e-06 34 136 .. 137 252 .. 124 254 .. 0.72
Alignments for each domain:
== domain 1 score: 24.8 bits; conditional E-value: 3.1e-09
TIGR00093 34 vGRLDrdseGlllltddgelqhrlth..pekevektYlvqvegsvtded...........lealrkGvkledektkpaklklikepelktklrvtlte 118
v R+D++++Gll+++++ + + l + +++++ k+Yl+ v g ++ ++ +++ + v+ ++ k++ ++ ++++ + +t ++ ++
MMSYN1_0517 137 VHRIDKQTTGLLIVAKNDKTHKLLSEmfKNHQIYKEYLAIVSGVIKPNKglidapigrsqIDRKKMSVTAKNSKQAITTFEVVERFLKNTLVKCQIQT 234
569*************999766664422567788*******9988755321111111111444555566666666666666666666599******** PP
TIGR00093 119 GrnrqvrRltaavglevl 136
Gr +q+r ++ ++ +vl
MMSYN1_0517 235 GRTHQIRVHFNYINHPVL 252
********9999999987 PP
>> TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 0.2 3.8e-06 0.0043 1 52 [. 14 67 .. 14 85 .. 0.87
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 3.8e-06
TIGR00478 1 rLdvlLvk..rglvesRekakrlilkgevlvnkkkvdkPsalvdkdakielvqe 52
rLd lLv+ + sR+ +++li+ + vn++ +++ ++ v+ +++i++ +
MMSYN1_0517 14 RLDKLLVEllTSYDYSRSYIQKLIKEECISVNNQIITNNNFVVKPNSQITITIK 67
799999983335568**********************************98755 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (310 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 257 (0.0572638); expected 89.8 (0.02)
Passed bias filter: 118 (0.0262923); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 2119.87
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0517 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0518 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0518.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0518/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0518 [L=202]
Description: lspA 3=Putative Protein export
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.1e-19 66.2 16.2 9.8e-19 65.8 16.2 1.2 1 TIGR00077 lspA: signal peptidase II
Domain annotation for each model (and alignments):
>> TIGR00077 lspA: signal peptidase II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 65.8 16.2 2.2e-22 9.8e-19 8 155 .. 24 177 .. 16 190 .. 0.86
Alignments for each domain:
== domain 1 score: 65.8 bits; conditional E-value: 2.2e-22
TIGR00077 8 kllllklvlilligidqlskylvlkavklgetivalsdvinitvvrNkGvaFslladqegqvyflkllalaisllllvfllkykelqkietiafglil 105
kl++ ++i+li +d sk +v+ ++klget ++++++n+ +v N G+a++ l+d+ ++v ++ + ++ +++fl +k ++ i + +il
MMSYN1_0518 24 KLIVCLPIFISLISFDWISKAIVVSHMKLGETKTFINGFLNFQYVINLGMAYGKLHDKAYLVIIFATIFSLFLTTIFIFLNNKK---WL--IVLVIIL 116
677778899***************************************************999999999999999999997776...65..66778** PP
TIGR00077 106 ggalgNviDRlvsg........eVvDfldfklgny...fpvFNlADvaitvgvillllkal 155
+g+ gN++ Rl+ + +VvDfl++ + + vFNlAD +++++++l +l ++
MMSYN1_0518 117 AGSWGNLLARLWAPgnennvyyGVVDFLTWDFSLFnsrDYVFNLADLYVNIAIGLTILFTI 177
************97777777888*****766655433745********9999887666544 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (202 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 297 (0.0661765); expected 89.8 (0.02)
Passed bias filter: 81 (0.0180481); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1526.74
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0518 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0519 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0519.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0519/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0519 [L=915]
Description: ileRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.4e-268 889.4 19.9 8.3e-268 889.0 19.9 1.0 1 TIGR00392 ileS: isoleucine--tRNA ligase
5.8e-115 383.1 22.4 2.4e-69 232.2 17.5 2.0 2 TIGR00422 valS: valine--tRNA ligase
5.7e-40 135.1 25.2 5.1e-25 85.7 1.5 5.0 4 TIGR00396 leuS_bact: leucine--tRNA ligase
7.4e-32 108.7 16.0 5.9e-15 52.9 5.5 3.9 4 TIGR00398 metG: methionine--tRNA ligase
3.6e-28 96.0 16.6 8e-22 75.0 0.5 3.2 3 TIGR00395 leuS_arch: leucine--tRNA ligase
8.2e-06 23.1 1.2 8.2e-06 23.1 1.2 3.0 3 TIGR00435 cysS: cysteine--tRNA ligase
Domain annotation for each model (and alignments):
>> TIGR00392 ileS: isoleucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 889.0 19.9 1.1e-270 8.3e-268 2 858 .. 16 830 .. 15 832 .. 0.96
Alignments for each domain:
== domain 1 score: 889.0 bits; conditional E-value: 1.1e-270
TIGR00392 2 feekanlskkeekilkkweekdifekvkkkkedkkefvlhdGPPyanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekklgi 99
f+++anl++ke+k+ ++w+e++i++k k +e+kk fvlhdGPPyanG++h+ghalnk+lKD+i+r+k+ +G+++ + GWDtHGLPiE +v+k +g+
MMSYN1_0519 16 FDMRANLNQKEPKFEQFWQENQIYNKKLKLNENKKVFVLHDGPPYANGDLHIGHALNKTLKDFIIRFKNATGYYAPFIMGWDTHGLPIESAVTK-MGV 112
89******************************************************************************************87.677 PP
TIGR00392 100 ekkeeiesleveefrekcrefalkaieeqkeqfqrlgvlvDfekpYltldkeyeesvlellkelaekgllkrdlkvvywspeletaLaeaEveykeyk 197
+++++s+ fre c ++al+++++q +qf+rlg+++D++++Y+tl++++e s+l+l++++++kgl+++dlk++ywsp++e+aLa+ E+ yk
MMSYN1_0519 113 D-RKSMSSVA---FRELCYKYALEQVSNQANQFNRLGMFTDYDTKYVTLTHDFEMSELRLFEKMYQKGLIYKDLKPIYWSPSSESALADSEII---YK 203
7.89999999...********************************************************************************...56 PP
TIGR00392 198 dvkdpsiyvkfkvkkeekteakvklslliWTtTPWTLpsNlaiavnpdleYalveleskeevlilakkllekllkkageedleiikkvkgsdlegley 295
d ++psiyv v+++++ + +++l+iWTtTPWTLpsN+ iav+ ++Y+l+++e+ ++++ila++l++++ +++g+e++++ik++ ++l gl+y
MMSYN1_0519 204 DITSPSIYVGCDVVNSDEFK---NTQLIIWTTTPWTLPSNQLIAVGSKIKYSLIQVENLDKQFILASDLINQVSQNIGWENVKVIKEIDANKLVGLNY 298
6*************887777...56789********************************************************************** PP
TIGR00392 296 ehplsekkeqleevafvvlggdhVttedGtGivHtAPghGeeDyevgkkygleevllpvdekgvyteevadlkgrfvkdadkdvlkankaiiekLkek 393
hpl+++k +v++g+hVt+e+G+G+vH+A g+Ge+D+ ++k+++++ + p+d++g++t+e+ dl + + ++ + ++nk+i++kL+e+
MMSYN1_0519 299 AHPLYDTKI------SKVVLGHHVTSESGSGLVHIASGFGEDDFLIAKQNNIK-PFAPIDNQGKFTTEISDL---DPQLVGMFYDDTNKIITKKLEEN 386
******999......556666*******************************5.99**************95...77888999999************ PP
TIGR00392 394 nlllkaekikHsyPhcwRtkkPviyrateqwFikvkeikeelleeikkvkwvpekgekRlkkmlenrkdWciSRqRyWGvPipvwvaekteelivvgs 491
+ llk + ++HsyPh+wRtkkPviyr t qwF+++ +k+e+l+++++++ p++++kRl ++l +r+dW+iSRqR WGvPi +++++ + +++ ++
MMSYN1_0519 387 KKLLKLKFLTHSYPHDWRTKKPVIYRCTLQWFVNLAPVKNEILKNVDQINTHPKWAKKRLYQVLDERTDWTISRQRLWGVPIIAFYDQNNNLVLNEQI 484
*****************************************************************************************9888***** PP
TIGR00392 492 ieeleekiekkgidawiedlhkdlldkitlkskeggeykreedvlDvWfdSGsspyavleyklenekkkevfpadlilEGsDQtrGWFyssllisval 589
++++++kie+ g++aw++ ++ ++l++ + ++ ++k+e+d+lDvWfdSGss a+ +++ + + p+d++lEG DQ+rGWF++s++ s++
MMSYN1_0519 485 LNYAINKIEQVGTNAWFSLDADEFLPDEYKNK----SLKKEKDILDVWFDSGSSAIALSQKYPN-----LKLPYDMYLEGNDQYRGWFNASMINSTIY 573
***************************77666....59********************999987.....89*************************** PP
TIGR00392 590 sdkapykkvithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvassdpaedlkfseeilkevaekllkilnntlrFlllyanLdkfkpeeks 687
s+++pyk++++hG++ dekG+KMSKslgN vdp + + +GaD+lRl+vas+d+++d k+++ei+k++ e+++ki+n t+rF+l anL++f+ +k+
MMSYN1_0519 574 SNTSPYKQLVSHGMTTDEKGNKMSKSLGNGVDPIAFANDLGADILRLWVASTDFTDDQKIGKEIIKQISESYRKIRN-TMRFIL--ANLNDFN--AKT 666
****************************************************************************9.******..*******..555 PP
TIGR00392 688 lkveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLsnwYlriskdrlyaekkdedkr.aaqttlyeiletlvkllapilpflaee 784
+kl+e+D + l +l+s+ ++v +a+e+ +f+ v+ ++++v+++Ls++Yl+++kd+ly+++k+ +r ++qt+lye l l+ +l pil +++ee
MMSYN1_0519 667 DYQTKLSEVDMYSLFNLTSFKNKVIQAYEELNFSLVYTLVMNYVTKNLSAFYLDFIKDILYINSKNDLRRrQVQTVLYEQLYCLIDVLRPILVHTIEE 764
556678*************************************************************9999*************************** PP
TIGR00392 785 iyqnlkeekkeesvhlnefpevdeeavdealeasmklvkeiveavlalrdkvnkklrqplkelvikksdeealk 858
+yqnl+ ++k esvhl + +e+ +++ +++ + ++++ v+ lrd+vnk+l+ +++++i+k e++++
MMSYN1_0519 765 VYQNLNDNNKVESVHLLDNKEQ------NFVYDKEFI--SKWDQVMILRDDVNKALEISRENKIINKGFEAVVN 830
*******99*********9774......677777777..89*************************99988776 PP
>> TIGR00422 valS: valine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 153.6 0.2 1.9e-48 1.4e-45 6 230 .. 21 245 .. 16 252 .. 0.92
2 ! 232.2 17.5 3.3e-72 2.4e-69 239 803 .. 292 876 .. 287 895 .. 0.85
Alignments for each domain:
== domain 1 score: 153.6 bits; conditional E-value: 1.9e-48
TIGR00422 6 dpkevekklyekweesgvfkp..dedeekesfiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkklkaegktk 101
+ ++ e k+ ++w+e+++++ + +e+k+ f++ PP+ G lHiGHal+ +l D++iR+k g+ f++G+D +g++ ++ v k ++
MMSYN1_0519 21 NLNQKEPKFEQFWQENQIYNKklKLNENKKVFVLHDGPPYANGDLHIGHALNKTLKDFIIRFKNATGYYAPFIMGWDTHGLPIESAVTKMGV----DR 114
566789999**********751156888899***************************************************9998876544....46 PP
TIGR00422 102 edlgreefvekilewkeesgetikeqlkrLGvsldwsrerfTldeelskavkeaFvrlyeeglIyrgkrlvnwdpkletaisdlEveykevkgklyyi 199
+ ++ +f+e + +++ e+ + +q++rLG+ +d++ +++Tl++++ + + F ++y++glIy++ +++ w+p +e+a++d E++yk+ + y+
MMSYN1_0519 115 KSMSSVAFRELCYKYALEQVSNQANQFNRLGMFTDYDTKYVTLTHDFEMSELRLFEKMYQKGLIYKDLKPIYWSPSSESALADSEIIYKDITSPSIYV 212
889999************************************************************************************99999999 PP
TIGR00422 200 kyklangs..gkdklvvATTRPEtllgdtavaV 230
+ n++ ++ +l++ TT P tl + +aV
MMSYN1_0519 213 GCDVVNSDefKNTQLIIWTTTPWTLPSNQLIAV 245
99999877666679***********99998888 PP
== domain 2 score: 232.2 bits; conditional E-value: 3.3e-72
TIGR00422 239 elvgkkvilPlvnrki.piiaDeevdkefGtGvvkvtpahDknDyevgkrhklelinildedgklneea....geyqglerfearkkvvedlkeegll 331
+lvg + +Pl + ki +++ ++v +e G+G v +++ ++D+ + k+ +++ +d++gk++ e + g+ ++ k + ++l+e++ l
MMSYN1_0519 292 KLVGLNYAHPLYDTKIsKVVLGHHVTSESGSGLVHIASGFGEDDFLIAKQNNIKPFAPIDNQGKFTTEIsdldPQLVGMFYDDTNKIITKKLEENKKL 389
68899999*******9679999********************************************99988888999********************* PP
TIGR00422 332 vkieplkqnvgtceRsktvvEpllskQWfVkvekLadkaleaaekegeikfvPkrfekeylsWleelkdWcISRQliwghriPvwy........eket 421
k + l+++ ++ +R+k++v + QWfV++ ++++++l+ ++ +i+ Pk +k++ + l+e dW ISRQ++wg +i ++y +
MMSYN1_0519 390 LKLKFLTHSYPHDWRTKKPVIYRCTLQWFVNLAPVKNEILKNVD---QINTHPKWAKKRLYQVLDERTDWTISRQRLWGVPIIAFYdqnnnlvlN--- 481
**********************************9999999999...6**************************************444444441... PP
TIGR00422 422 gevvvakeeaeekektklgs.....................keleqdeDVLDTWfsSslwplstl.gWpeekkdlkkfyptsllvtgfDIiffWvarm 497
++ + + +k + + k+l++++D+LD Wf+S+ +++ ++p+ k p ++ +g D + W
MMSYN1_0519 482 -----EQILNYAINKIE--QvgtnawfsldadeflpdeyknKSLKKEKDILDVWFDSGSSAIALSqKYPNLK------LPYDMYLEGNDQYRGWFNAS 566
.....322222222221..11224455666677777778779****************99987541566555......899***************** PP
TIGR00422 498 illslaltgqvPfkevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkveaarkFlnKlwnasrfvlmnledkk 595
+++s+ P+k+++ hg+ de+g+KmSKSlgN++dP+ ++ GaD lR+++a++ +D ++ + +++ ++ +K+ n +rf+l nl+d +
MMSYN1_0519 567 MINSTIYSNTSPYKQLVSHGMTTDEKGNKMSKSLGNGVDPIAFANDLGADILRLWVASTDF-TDDQKIGKEIIKQISESYRKIRNTMRFILANLNDFN 663
*********************************************************9998.89*******************************998 PP
TIGR00422 596 eleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwyiElvKkely..eeeeeekkeakstlaivLdkllrllhpfiPfl 691
+ ++ ++kls +d + l +l++ ++v +a ++ +f+ + + +++++ +++ y++++K ly +++ ++++++++l+ L l+ +l p++ +
MMSYN1_0519 664 AKTDYQTKLSEVDMYSLFNLTSFKNKVIQAYEELNFSLVYTLVMNYVTKNLSAFYLDFIKDILYinSKNDLRRRQVQTVLYEQLYCLIDVLRPILVHT 761
88899999****************************************************9876214557789999********************** PP
TIGR00422 692 teeiyqklkek..adsimlasyPeveeelvdekaekefe...lvkeiikevRnlkaesnialnaklevllkleeaeeeaerlkksaedlkklikleev 784
ee+yq+l+++ +s++l + e++ + d++ ++ + ++ + +++ ++ e++i n+ e++++ + + +e+++l k+++dl +++ ++++
MMSYN1_0519 762 IEEVYQNLNDNnkVESVHLLDNKEQNF-VYDKEFISKWDqvmILRDDVNKALEISRENKII-NKGFEAVVNIKLD-KEYDDL-KNIKDLSQIFIVNSI 855
********9986678888876544443.445555555550004455666666666666664.5666777777766.455555.467888999999999 PP
TIGR00422 785 evvsekee..eeeavakvvpe 803
+ v + ++ +++++ ++++e
MMSYN1_0519 856 NFVDNIDNsfIKTNISSIKVE 876
999888874455555555554 PP
>> TIGR00396 leuS_bact: leucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 85.7 1.5 6.9e-28 5.1e-25 3 168 .. 22 201 .. 20 210 .. 0.85
2 ! 14.1 0.1 3e-06 0.0023 236 401 .. 223 387 .. 205 394 .. 0.74
3 ? 0.7 0.1 0.034 25 174 211 .. 402 440 .. 393 448 .. 0.88
4 ! 35.3 10.7 1.1e-12 8.5e-10 412 785 .. 454 795 .. 419 855 .. 0.74
Alignments for each domain:
== domain 1 score: 85.7 bits; conditional E-value: 6.9e-28
TIGR00396 3 leeieekwqqkwkekkvkkveed.sekkkyYiL.smfPYPsgalHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaiergtaPa.... 94
l++ e k++q+w+e++ ++++ + +e+kk ++L + PY g+lH+GH n t+ D + R+k + gy +G+D+ GlP e a + g + +
MMSYN1_0519 22 LNQKEPKFEQFWQENQIYNKKLKlNENKKVFVLhDGPPYANGDLHIGHALNKTLKDFIIRFKNATGYYAPFIMGWDTHGLPIESAVTKMGVDRKsmss 119
677899**********9876655366678899834578**********************************************99887776651112 PP
TIGR00396 95 ........kwteeniakmkkqlqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevi 168
k+ e +++ +q++ lg+ d+d + t + ++ + ++F ++++kgL+yk+ +++w p+ + La+ e+i
MMSYN1_0519 120 vafrelcyKYALEQVSNQANQFNRLGMFTDYDTKYVTLTHDFEMSELRLFEKMYQKGLIYKDLKPIYWSPSSESALADSEII 201
2222222246668999999************************************************************998 PP
== domain 2 score: 14.1 bits; conditional E-value: 3e-06
TIGR00396 236 ekekiavfttrpdtlfgvtylalaaehp..lvkkvakenkk..vaefikkaeqkseaertkeekekkg.vktglkainPltkekiP.iyvanyvlaeY 327
++ +++++tt p tl + + +a+ ++ + l++ +++ +++i++++q+ e+ k ke + +gl+ +Pl ++ki + ++++v +e
MMSYN1_0519 223 KNTQLIIWTTTPWTLPSNQLIAVGSKIKysLIQVENLDKQFilASDLINQVSQNIGWENVKVIKEIDAnKLVGLNYAHPLYDTKISkVVLGHHVTSES 320
36789******************986541155543333333546789999999999888887776655155789999********648889******* PP
TIGR00396 328 GtgavmgvpahderDfeFakkyklkikevikkaekdlkeealteegvlvnsgefsglkseeakekiikllekek 401
G+g v + e Df ak++++k i++++ ++t e+ ++++ + g+ + +++ i+k+le++k
MMSYN1_0519 321 GSGLVHIASGFGEDDFLIAKQNNIKPFAPIDNQG------KFTTEISDLDP-QLVGMFYDDTNKIITKKLEENK 387
**********************999888888332......34555544443.5566666666666777776665 PP
== domain 3 score: 0.7 bits; conditional E-value: 0.034
TIGR00396 174 seRgdasvekkelkqwvlkitkyaekLledLeeLe.Wpe 211
+R++ +v+ + qw++++ +++l+++++++ p+
MMSYN1_0519 402 DWRTKKPVIYRCTLQWFVNLAPVKNEILKNVDQINtHPK 440
6********************************986665 PP
== domain 4 score: 35.3 bits; conditional E-value: 1.1e-12
TIGR00396 412 rDWlvsRqRYWGePiPiihledgnavpvpeedLPvkLPeleeldgeGvesPls.kikewvkvkkpslgkkakretdtmdtfidssWYylryldpknke 508
DW +sRqR WG Pi i + ++ n++ +e+ L + + e++ ++ +s +e+ + + +k+ k+e d +d + ds +
MMSYN1_0519 454 TDWTISRQRLWGVPI-IAFYDQNNNLVLNEQILNYAINKIEQVGTNA---WFSlDADEFLPDEYK--NKSLKKEKDILDVWFDSG----------SSA 535
69***********99.5566667777777788888777777666644...443134556555444..56678**********997..........455 PP
TIGR00396 509 kaldkeklekylPvDlYiGGieHavlHLLYaRFfhkllrdlglvstkePfkkLltqGmvlgfvykengkvpadellekdekvkdkedkelvvvslekm 606
al++++ + lP D+Y+ G + Y +f+ + + + s++ P+k+L++ Gm + e+g+ km
MMSYN1_0519 536 IALSQKYPNLKLPYDMYLEGNDQ------YRGWFNASMINSTIYSNTSPYKQLVSHGMTTD----EKGN---------------------------KM 596
67888899999*********996......99***************************998....6666...........................** PP
TIGR00396 607 skskkngidPqeivkkyGaDalRlyilFasPieksleWde..sgleGaeRfldrvynlvkeilsekeaktelkeealeeaekelrrevhkalkkvted 702
sks +ng+dP + GaD lRl++ + ++++ +e ++++ R + +++ ++l++ +a ++ +++l+e++ ++ + +kv +
MMSYN1_0519 597 SKSLGNGVDPIAFANDLGADILRLWVASTDFTDDQKIGKEiiKQISESYRKIRNTMRFILANLNDFNA-KTDYQTKLSEVDMYSLFNLTSFKNKVIQA 693
*************************9877666666555443345555555555555555555555554.33344566677777777777777777777 PP
TIGR00396 703 lekkeslntviselmkllnallkakk.....................eelllealkalvtvlspiaPhlaeelaeklgeeeseikqakwpkvdetalv 779
+e+ + + +v + +m+++ + l+a +++l e+l l+ vl pi h+ ee+ ++l+ +++++++ +++ e+ +v
MMSYN1_0519 694 YEELN-FSLVYTLVMNYVTKNLSAFYldfikdilyinskndlrrrqvQTVLYEQLYCLIDVLRPILVHTIEEVYQNLN-DNNKVESVHLLDNKEQNFV 789
77777.7777776666654444433334555666666677787776568999**************************.5558999989888888888 PP
TIGR00396 780 edkvki 785
dk i
MMSYN1_0519 790 YDKEFI 795
877544 PP
>> TIGR00398 metG: methionine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.4 0.1 9.1e-17 6.8e-14 8 140 .. 59 208 .. 57 310 .. 0.75
2 ! 11.3 0.3 3.1e-05 0.023 173 240 .. 406 468 .. 395 502 .. 0.82
3 ? -2.2 0.0 0.39 2.9e+02 113 141 .. 492 520 .. 476 524 .. 0.84
4 ! 52.9 5.5 7.9e-18 5.9e-15 310 512 .. 577 780 .. 570 798 .. 0.85
Alignments for each domain:
== domain 1 score: 49.4 bits; conditional E-value: 9.1e-17
TIGR00398 8 yYangkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAesegltPk........elvdkla.eefkklfklln.....isfdrFirT 91
+Yang +H+Gh+l+ l D + r+k+ G+ + f+ g D hG +ie++ + g++ k el+ k+a e+ +++ +++n ++d T
MMSYN1_0519 59 PYANGDLHIGHALNKTLKDFIIRFKNATGYYAPFIMGWDTHGLPIESAVTKMGVDRKsmssvafrELCYKYAlEQVSNQANQFNrlgmfTDYDTKYVT 156
8****************************************************998722222222445555423333344444422222245544455 PP
TIGR00398 92 tdeehkeivqkifekllenGyiyekeikglYcvecesflpdr...yvegecp 140
+++ + ++fek++++G+iy++ +++++ es l+d+ y++ + p
MMSYN1_0519 157 LTHDFEMSELRLFEKMYQKGLIYKDLKPIYWSPSSESALADSeiiYKDITSP 208
555555556689****************************996654444444 PP
== domain 2 score: 11.3 bits; conditional E-value: 3.1e-05
TIGR00398 173 kakpelkeeehyFfrlskfekkleelikknpeskklasevknvlenflkegLkdlaitRdlvewGipv 240
k+ ++++ + ++F++l ++++ + + + +++ k+a+++ ++l+e d+ i+R+ wG+p+
MMSYN1_0519 406 KKPVIYRCTLQWFVNLAPVKNEILKNVDQINTHPKWAKKRLY---QVLDE-RTDWTISRQRL-WGVPI 468
55567889999*************999988888888777744...67777.89*********.***98 PP
== domain 3 score: -2.2 bits; conditional E-value: 0.39
TIGR00398 113 iyekeikglYcvecesflpdryvegecpk 141
i++ ++ +++ + ++flpd y+++ +k
MMSYN1_0519 492 IEQVGTNAWFSLDADEFLPDEYKNKSLKK 520
77778899*************99876554 PP
== domain 4 score: 52.9 bits; conditional E-value: 7.9e-18
TIGR00398 310 klpkqlvahgyltve.gkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvk 406
kqlv+hg+ t e g+kmSkS+gn+vdp + + +gadilR ++ +++ +++D ++ +e ++++ e k+ N R + + f++k +++
MMSYN1_0519 577 SPYKQLVSHGMTTDEkGNKMSKSLGNGVDPIAFANDLGADILRLWV-ASTDFTDDQKIGKEIIKQIS--ESYRKIRNT-MRFILANLNDFNAKTDYQT 670
5679**********99***************************886.5789*********9999987..8899**996.5899999999********* PP
TIGR00398 407 easeedekllkkieealekidealekfefkkaleeilklvse..gnklideekPwelakee..ekekellavllelirvlsillkpilpklsekilkl 500
+ se d l +++ +k+ +a+e+++f+ +++ v++ ++d k+ + + + ++++ vl+e ++ l+ +l+pil+++ e++++
MMSYN1_0519 671 KLSEVDMYSLFNLTSFKNKVIQAYEELNFSLVYTLVMNYVTKnlSAFYLDFIKDILYINSKndLRRRQVQTVLYEQLYCLIDVLRPILVHTIEEVYQN 768
*99999999999*************************97765213457777788655443334899******************************** PP
TIGR00398 501 lnleleadkllk 512
ln + + +++
MMSYN1_0519 769 LNDNNKVESVHL 780
*99888555532 PP
>> TIGR00395 leuS_arch: leucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.0 0.5 1.1e-24 8e-22 4 318 .. 26 338 .. 23 348 .. 0.84
2 ? 1.2 0.3 0.022 16 442 496 .. 413 465 .. 404 474 .. 0.87
3 ! 27.2 4.1 3e-10 2.3e-07 606 821 .. 580 816 .. 566 869 .. 0.69
Alignments for each domain:
== domain 1 score: 75.0 bits; conditional E-value: 1.1e-24
TIGR00395 4 ekkyqkrWeeekifead..pddrekff.ltvayPylnGvlhaGhlrtftivevvarfermkgknvLfplgfhvtGtPilglaekikrrdektikvyte 98
e k+++ W+e++i++ +++ k+f l Py nG lh+Gh+ t ++++rf+ g+ + f +g+ G Pi + k+ +
MMSYN1_0519 26 EPKFEQFWQENQIYNKKlkLNENKKVFvLHDGPPYANGDLHIGHALNKTLKDFIIRFKNATGYYAPFIMGWDTHGLPIESAVTKMGVDR-------KS 116
78************99855555556651566789********************************************98877765432.......23 PP
TIGR00395 99 vhavPkeellkladpekiveyfsreaesalkslGysidWrrefkttdevydrfieWqlrkLkelGlikkGehpvrycpkdenpvedhdllsGegvtiv 196
+ +v el ++ +e s++a+ ++++lG+ d+ +++t + ++ ++k+ ++Gli k +p+ ++p e + d ++ + ++
MMSYN1_0519 117 MSSVAFRELC----YKYALEQVSNQAN-QFNRLGMFTDYDTKYVTLTHDFEMSELRLFEKMYQKGLIYKDLKPIYWSPSSESALADSEIIYKDITSPS 209
3344444443....5899999999886.699****************99*9998899***************************************** PP
TIGR00395 197 eyilikfkledg..alylvaatlrPetvyGvtnvfvnPeieyvivevg..dekfivskeaveklsyqk..lklkvieevkgkqligkkvkaPvvgkev 288
y++ + d + l++ t P t+ + v +i+y ++v+ d++fi++ + ++++s + ++kvi+e+++++l+g P+ ++
MMSYN1_0519 210 IYVGCDVVNSDEfkNTQLIIWTTTPWTLPSNQLIAVGSKIKYSLIQVEnlDKQFILASDLINQVSQNIgwENVKVIKEIDANKLVGLNYAHPLYDTKI 307
****9987666412478999999*******************97776533789*********9997642256********************776664 PP
TIGR00395 289 .piLPaefvdaekatGvvlsvPahaPadyia 318
+++ + v++e + G v +d++
MMSYN1_0519 308 sKVVLGHHVTSESGSGLVHIASGFGEDDFLI 338
27888899**********9888888888765 PP
== domain 2 score: 1.2 bits; conditional E-value: 0.022
TIGR00395 442 ledqWflkysdeeWkekalkclekmrlipeevkeafeekidWlkdkavarrkGLG 496
qWf++ + k+++lk +++++ p+ k+ + +++d d+ ++r++ G
MMSYN1_0519 413 CTLQWFVNLAP--VKNEILKNVDQINTHPKWAKKRLYQVLDERTDWTISRQRLWG 465
5569***9975..79***********************************98655 PP
== domain 3 score: 27.2 bits; conditional E-value: 3e-10
TIGR00395 606 rgivvnGyvlle.gkklskskGnlltlkeavekfGadvarlylldaaelvedadfkeseveaakkrlerlkefaeeiakksd...levg..eelsfld 697
+ +v +G+ + e g+k+sks Gn + ++ Gad+ rl+++ +++ ++d + ++ ++++ + +++++ + i +++ +++ +ls +d
MMSYN1_0519 580 KQLVSHGMTTDEkGNKMSKSLGNGVDPIAFANDLGADILRLWVA-STDFTDDQKIGKEIIKQISESYRKIRNTMRFILANLNdfnAKTDyqTKLSEVD 676
66777888776548***************************987.57899999998766665555555555544444444433334444223344444 PP
TIGR00395 698 rwllsrl...nkaikevkeale.......nlel.rkavkaalfelkkdvdyyrrrsgenvkd...vlaevleaiikLlaPfaPhlaeelyeevGkegf 781
+ l +l ++++ +++e+l+ +++ k + a + ++ kd+ y + + + ++ vl e l i +l P+ h+ ee+y+++ ++
MMSYN1_0519 677 MYSLFNLtsfKNKVIQAYEELNfslvytlVMNYvTKNLSAFYLDFIKDILYINSKNDLRRRQvqtVLYEQLYCLIDVLRPILVHTIEEVYQNLNDNNK 774
443333311133333333332211111111222134444455589999999998888766555559999999*********************99999 PP
TIGR00395 782 vseakfPevseea..vdkevekaeeylrnlvrdikeiakiaa 821
v+ + + +e+ dke + + l +d++ +i
MMSYN1_0519 775 VESVHLLDNKEQNfvYDKEFISKWDQVMILRDDVNKALEISR 816
999988887776422478888888888888888888777765 PP
>> TIGR00435 cysS: cysteine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.9 0.0 0.061 45 21 64 .. 50 94 .. 36 119 .. 0.81
2 ! 23.1 1.2 1.1e-08 8.2e-06 241 386 .. 570 717 .. 540 746 .. 0.65
3 ? 0.4 7.3 0.082 62 275 444 .. 721 894 .. 704 904 .. 0.76
Alignments for each domain:
== domain 1 score: 0.9 bits; conditional E-value: 0.061
TIGR00435 21 kvkiYvCGpT.vYdasHlGhaRtlvvfDvlrrilqylgYdvqyvq 64
kv + Gp + ++H+Gha + D + r +++gY +++
MMSYN1_0519 50 KVFVLHDGPPyANGDLHIGHALNKTLKDFIIRFKNATGYYAPFIM 94
6666666654134589**********************9887775 PP
== domain 2 score: 23.1 bits; conditional E-value: 1.1e-08
TIGR00435 241 sealfdkqlvkyflHngf.lkiegeKmSKSlgNfitikdllkkfdpralRllllsvhyrnqldfseelleeaknalerlakalralkedlasakeisk 337
s+ + k + g+ +g+KmSKSlgN + + + + +lRl ++s+ + + + +e +++ +++ ++++++r + +l+ ++ ++
MMSYN1_0519 570 STIYSNTSPYKQLVSHGMtTDEKGNKMSKSLGNGVDPIAFANDLGADILRLWVASTDFTDDQKIGKEIIKQISESYRKIRNTMRFILANLNDFNAKTD 667
5555554444444444440455789***********************************************************99999886554444 PP
TIGR00435 338 kksp.lekefeaefvEaldddlntaealavl.selvkksnlkeiskakaal 386
+++ e + ++ f+ + ++ +a++ l ++lv + +++++k+ a+
MMSYN1_0519 668 YQTKlSEVDMYSLFN-LTSFKNKVIQAYEELnFSLVYTLVMNYVTKNLSAF 717
443323333333333.33333344444444433455444444444444444 PP
== domain 3 score: 0.4 bits; conditional E-value: 0.082
TIGR00435 275 tikdllkkfdpralRllllsvhyrnqldfseelleeak.nalerlakalralkedlasakeiskkksp..lekefeaefvE..aldddlntaealavl 367
+ikd+l + ++lR +++ ++ql + l+ +++e+++++l+ +++++s++ + +k+++ +kef +++ l dd+n a ++
MMSYN1_0519 721 FIKDILYINSKNDLRRRQVQTVLYEQLYCLIDVLRPILvHTIEEVYQNLND-NNKVESVHLLDNKEQNfvYDKEFISKWDQvmILRDDVNKALEISRE 817
588999999999998888888888888887777776655777888888773.4455555444444333556788888877755678999999999999 PP
TIGR00435 368 selvkksnlkeiskakaallieelialesvlekllglpsksvqagsnddelgeled.lieersearkkkelkkaDkiR 444
++++k +++ + k+++ +++l++++++ +++ + ++v + n ++++ + ++e+++ +++++ ++ D++
MMSYN1_0519 818 NKIINKGF-EAVVNIKLDKEYDDLKNIKDLSQIFIVNSINFVDNIDNSFIKTNISSiKVEQKQGLKCQRCWQIFDNLI 894
99999887.9999999*************9999888888888888887788888763699999999999999999865 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (915 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 253 (0.0563725); expected 89.8 (0.02)
Passed bias filter: 76 (0.016934); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.61
# Mc/sec: 2154.06
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0519 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0523 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0523.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0523/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0523 [L=386]
Description: ftsA 3=Putative Cell division
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.0018 15.4 0.2 0.0034 14.5 0.2 1.4 1 TIGR01174 ftsA: cell division protein FtsA
Domain annotation for each model (and alignments):
>> TIGR01174 ftsA: cell division protein FtsA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.5 0.2 7.6e-07 0.0034 189 314 .. 204 330 .. 199 355 .. 0.85
Alignments for each domain:
== domain 1 score: 14.5 bits; conditional E-value: 7.6e-07
TIGR01174 189 LtedEkelGvvlidiGggttdiavytegsirytkvlpiggnnvtkDlakalktpleeAEkiKikygsalieleseeesveipsvgereerelskkela 286
L +d ++ +++d + +++ v+ ++ + +g n++ k l+++l++++e + + ++ ++ + ++ + e++ + k+++
MMSYN1_0523 204 LVKDQCQDHKLVVDWNWDEIEVGVFNNNVLLKIFKFSFGINKIIKNLSQSLNISFEMSKDYLFNNLDFSSYNIDNLNILSLWNNSENKLDITNGKQIK 301
5567777777899999999**************************************9998888888877777777888888888888899999**** PP
TIGR01174 287 eiieaRveEileivkqkelkksgl.keel 314
+ i++ + Ei + ++q lk++++ + ++
MMSYN1_0523 302 QLIKSIISEIYTTINQSILKEQNInNYQI 330
***************99999999855555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (386 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 344 (0.0766488); expected 89.8 (0.02)
Passed bias filter: 54 (0.0120321); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 2519.60
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0523 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0524 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0524.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0524/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0524 [L=308]
Description: rsmH, 16S rRNA m4C1402 5=Equivalog rRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.3e-108 358.8 7.0 7e-108 358.7 7.0 1.0 1 TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltr
Domain annotation for each model (and alignments):
>> TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 358.7 7.0 1.6e-111 7e-108 5 310 .] 2 308 .] 1 308 [] 0.97
Alignments for each domain:
== domain 1 score: 358.7 bits; conditional E-value: 1.6e-111
TIGR00006 5 eeHksVLldevveglnikedgiyiDlTlGeggHskaiLeklse.grLiaidrDkqaieaakellkdlke.vvlikdnfanlfeelkelkvtkidgill 100
+H++VLl+e +e lnik+dgiy+D+TlG++gHs iL+kl++ g L aid+D+ ai++ake l++ ++ + li++nf+nl l+ ++v ++dgil
MMSYN1_0524 2 DKHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQkGFLYAIDQDQIAIDQAKEKLEQINNnFLLIQGNFSNLSALLAINHVFNVDGILY 99
58****************************************99******************99998888**************************** PP
TIGR00006 101 DLGvSspqldeaerGFsfkkdgplDmRmdqsqklsAaevlnelseedlekilkkygeekfskriakaivearkkkklkttkelaeviskavpakekvk 198
DLGvSspq+d a rGFs+k dgplDmRmd +++l+A++v+n++se+++++il+kygee fsk i+k+ive +++++ t el+e+i+++ p+k ++
MMSYN1_0524 100 DLGVSSPQIDIASRGFSYKMDGPLDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVE---SRPINSTLELVEIIKSVLPQKVLKQ 194
**********************************************************************...89*******************9999 PP
TIGR00006 199 kihpatkvFQaiRiavNdEleeleealesalellkkggrlsvisFHSlEdrivknffkelskl..vqvPeglpvkeeelkklklitkKpilpseeEik 294
k+hpa+k+FQa+Ri++N+El le++l++al+ll++++r++vi+FHSlE++ivkn+f++ ++ +q+ ++lp+k + + k kl++kKpi ps E++
MMSYN1_0524 195 KKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVITFHSLEEKIVKNIFNNSTNYyqEQLLSNLPIKANLNSKFKLVIKKPIKPSLLELE 292
9**********************************************************99862256799******988888**************** PP
TIGR00006 295 eNprsRSakLrvaekk 310
+N+rs SakL v+ek+
MMSYN1_0524 293 QNHRSHSAKLWVIEKN 308
**************95 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (308 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 284 (0.0632799); expected 89.8 (0.02)
Passed bias filter: 135 (0.0300802); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 2211.51
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0524 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0525 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0525.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0525/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0525 [L=133]
Description: mraZ 5=Equivalog Regulation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.5e-30 101.4 0.7 1.1e-29 101.2 0.7 1.0 1 TIGR00242 TIGR00242: division/cell wall cluster transcriptio
Domain annotation for each model (and alignments):
>> TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 101.2 0.7 2.4e-33 1.1e-29 1 126 [. 1 125 [. 1 132 [. 0.96
Alignments for each domain:
== domain 1 score: 101.2 bits; conditional E-value: 2.4e-33
TIGR00242 1 mllGatavtlDakgrlsvPakyreeleesmvvivrilenCLllypleefekieqklkalsstkkderrlkrlllanatevelDaagrvliansLlqda 98
ml G++++ +Dak rl++Pak+r++l + + ++++++ L++ ++f +++ + + +kd r+++r++ +n e+++D+ gr+ i+ +L+q+
MMSYN1_0525 1 MLFGTYEHCMDAKQRLTLPAKLRNKLSNP-IYLTKGYDADLEIWSKDDFLLQIKEILNQQNDQKDIRNIERIIWSNTVEIDIDNLGRIKIPYNLIQNL 97
99*************************96.*******************99888899999************************************** PP
TIGR00242 99 kLekeivliGqfnklelWdkveyeqyva 126
++ek++ ++G n+le+W+k +y+q+ +
MMSYN1_0525 98 NIEKDVFILGLGNRLEIWSKNKYNQHKN 125
***********************99755 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (133 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 145 (0.0323084); expected 89.8 (0.02)
Passed bias filter: 66 (0.0147059); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 954.97
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0525 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0526 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0526.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0526/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0526 [L=59]
Description: rpmF_bact: ribosomal protein L32 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.6e-25 85.1 4.2 7.9e-25 84.9 4.2 1.0 1 TIGR01031 rpmF_bact: ribosomal protein bL32
0.0038 15.2 0.3 0.0038 15.2 0.3 1.1 1 TIGR03826 YvyF: flagellar operon protein TIGR03826
------ inclusion threshold ------
0.015 13.9 3.6 0.073 11.7 0.1 2.1 2 TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zi
Domain annotation for each model (and alignments):
>> TIGR01031 rpmF_bact: ribosomal protein bL32
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.9 4.2 5.3e-28 7.9e-25 1 54 [. 2 54 .. 2 55 .. 0.99
Alignments for each domain:
== domain 1 score: 84.9 bits; conditional E-value: 5.3e-28
TIGR01031 1 AVPkrktSksrkrkRRshdaklkaptlvecpncGelklpHrvckscGyYkgrqv 54
AVP rktSks k+kRRsh a l+a+ lv+c+ncG + pH+vck+cG+Yk+++v
MMSYN1_0526 2 AVPFRKTSKSAKNKRRSHLA-LSAASLVSCTNCGAMIKPHHVCKECGFYKNKEV 54
9*****************99.*******************************98 PP
>> TIGR03826 YvyF: flagellar operon protein TIGR03826
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.2 0.3 2.5e-06 0.0038 74 103 .. 20 49 .. 4 59 .] 0.74
Alignments for each domain:
== domain 1 score: 15.2 bits; conditional E-value: 2.5e-06
TIGR03826 74 lkefpnlgykCErCgqsiregrlCesCaee 103
l + +C +Cg++i+ ++C++C
MMSYN1_0526 20 LALSAASLVSCTNCGAMIKPHHVCKECGFY 49
4444455679*****************755 PP
>> TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.7 0.1 4.9e-05 0.073 17 42 .. 12 37 .. 4 40 .. 0.71
2 ? 4.3 0.6 0.0099 15 32 39 .. 40 47 .. 36 49 .. 0.80
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 4.9e-05
TIGR02419 17 alaaarakkrveaasllvCeeCgepI 42
a +++r++ aasl C +Cg+ I
MMSYN1_0526 12 AKNKRRSHLALSAASLVSCTNCGAMI 37
334444444489999********998 PP
== domain 2 score: 4.3 bits; conditional E-value: 0.0099
TIGR02419 32 llvCeeCg 39
++vC+eCg
MMSYN1_0526 40 HHVCKECG 47
689****9 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (59 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 148 (0.0329768); expected 89.8 (0.02)
Passed bias filter: 81 (0.0180481); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 423.63
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0526 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0528 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0528.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0528/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0528 [L=794]
Description: pheRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-159 531.0 66.0 1.5e-159 530.8 66.0 1.1 1 TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subuni
9.7e-16 55.3 7.7 9.7e-16 55.3 7.7 3.0 4 TIGR00471 pheT_arch: phenylalanine--tRNA ligase, beta subuni
Domain annotation for each model (and alignments):
>> TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 530.8 66.0 6.5e-163 1.5e-159 1 798 [] 1 794 [] 1 794 [] 0.91
Alignments for each domain:
== domain 1 score: 530.8 bits; conditional E-value: 6.5e-163
TIGR00472 1 MkislkwLkeyvdlseisleeiaekltsiGlEveeveelkkslkgvvvGkvlevekhPnadkLkvckVdigekellqivcgaknveagkkVvvAlegA 98
M+i+ +wLk+y++l++is+++i ++l+s+G+Ev++v++l++ ++++++G v++ +++Pn++ Lk+ +V+ig k lqivcga nv+ +++V++A ++A
MMSYN1_0528 1 MIITRNWLKKYLNLDNISNDQINMALNSLGFEVDSVYDLNSLNSELILGYVEQSKQIPNTH-LKLNQVNIGTK-SLQIVCGASNVDVNQFVIIAPINA 96
9**********************************************************98.*********99.************************ PP
TIGR00472 99 kLpnglkIkksklrGveSeGMlCSleELgleeekl....sdgii.vLd....edaelgkdiaeylgldddvievsitpNRgDclSilgiArelAalld 187
+++ngl+++++k++ +eS+GM+C+l+E+g++ + + + +i+ v+d + +g d++++ gldd+++e+++t NR+Dcl+ ++i +elA+++d
MMSYN1_0528 97 TIANGLTLTSKKIQNYESQGMICALNEIGIDLSVInkedQLKIYnVFDhnldLKKYIGSDVKQIIGLDDYLFEIDLTLNRSDCLASFQILKELANYFD 194
*******************************998898553333313335544667799**************************************** PP
TIGR00472 188 lnlelpveeeke....tetedegfkveiedeeacprylgrvikgvkvke.splwlkerleksgirpiNnivDitNyv.llelGqplhafDadkiegri 279
l e++ +++ ++ d ++++ + +++++++++ + + + ++ + + + l ++i++ N ++ + ++ +l+++q+ + D+dk++
MMSYN1_0528 195 L--EIKNLDNNFsdfkKNNLDLKIDLVNQVKDQIKTISYSYFELNNKNDkLDSKDEIFLKLNQINSSNHLITNLSLIsTLSTAQTHILIDLDKLKS-- 288
6..444454444445578888888888889999988887777655555547788889999999*****9865554443899***************.. PP
TIGR00472 280 evrsakegeklltLdgkerelkkedlviaddk.kilalaGvmggkesgvtekttnivlesayfnpesirktarrlgistdssyrfergvdpeltekal 376
+L+ + + ++++l++ ++ k+++++G+ +++e++v+++++n++ + + +p +rk+++ l+is+ +r+ ++++p+l + a
MMSYN1_0528 289 -----------SNLKLEFINHDNKELLCLTNNnKLVNIIGLDTQNEFNVDNNSKNVLNIMLNIEPNLMRKQQKLLNISNTYLQRYIKPINPNLFNLAN 375
...........4455555555555555544444***************************************************************** PP
TIGR00472 377 dralelllelaggevksvvvssskekkkekkislrlkklnkilGtelskeevekiLkrLgfkvekkkeelevlvPsyRtDiereeDliEEiaRiyGyd 474
+ +ll +++ ++++++v + +++ k++++++++l+++n++lGt+l+ +++++++k+L+fk+++k++ l ++++++R Di++++Dl+EE+aR+y+yd
MMSYN1_0528 376 QTFSNLLNDYQLINKAYEVKILKQTFKNKQSLEIKLNEINDLLGTNLTIKQIKSLFKHLDFKITNKDDLLDFQIDQNRIDITSKNDLCEEVARLYSYD 473
************************************************************************************************** PP
TIGR00472 475 nieaeplsvsskeeknneeqelkkklrkllvglGfnEvityslvskekleklnlpklee.veiknplseelsvlRtsllpslLevlayNqnrknkevk 571
+i + pls+ s+++ +n + +l++kl+++l+glGfn+++tysl+s ++++ +nl++ +e +++ +pls+ +++ Rt+l +sl++v+ N + +nke+k
MMSYN1_0528 474 KIDEVPLSFTSFKKAKNLNLKLENKLTNYLIGLGFNNTKTYSLTSLNEAKYWNLFNISEfINLVSPLSNLRQTYRTNLSKSLIDVAIFNHSINNKELK 571
************************************************************************************************** PP
TIGR00472 572 lFEiGkvfekdseavkekerlailisgekeeeswnkkkeekvdfydlkgiveslLeklklsseal..flkkaeneelhpgqsaeiylkkkkiGfigev 667
lFEi+++++ ++ ++++l +l s +++s+n+ + ++ +fy+ k+i+e+++++++l+ ++ + + +e+hp+ + +iy+++++iG+++++
MMSYN1_0528 572 LFEIADIYDLNN---LKQRHLVFLTSNHIYKNSLNQ-QLIENNFYYNKEILENIFNLYNLDLSEIqyQNDLNLIKEIHPYINTTIYYQNQLIGYLYKL 665
*********999...********************5.9**********************9555532333334467********************** PP
TIGR00472 668 hpelakkydlkeevfvaeldldklleslkkvpkykeiskfpavtrDisilvdkdvevneiiklikkeglklleevelfDvYegknvg.egkkslalrl 764
+p+++ +++l+ ++fv+e++ld l ++++ ++k++skf++++rD++i +++d+++++++ ++++ ++k+l++ +++D Y ++n+ +++k l++++
MMSYN1_0528 666 NPKFESENKLN-PTFVCEINLDILNQFKNSFIEAKTLSKFQSSSRDLTIDISNDLTYQKVLFNALS-DVKYLKSHKIVDLYLDDNLIkNNTKALTIQF 761
**********7.**********7777777788*********************************9.**************9998654899******* PP
TIGR00472 765 vlrdkertLteeeinkivekvlnllkeklgaelr 798
v++d +++Lte+ein+++ek+++++k ++++++r
MMSYN1_0528 762 VFNDLDHQLTENEINQEFEKIIKNIK-QMKVVIR 794
**************************.7788887 PP
>> TIGR00471 pheT_arch: phenylalanine--tRNA ligase, beta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1.7 0.7 0.0072 16 29 101 .. 152 227 .. 127 272 .. 0.69
2 ! 55.3 7.7 4.3e-19 9.7e-16 279 466 .. 395 594 .. 295 688 .. 0.74
3 ? -3.4 0.0 0.26 5.8e+02 357 390 .. 694 731 .. 690 737 .. 0.69
4 ? -2.9 0.2 0.18 4.1e+02 159 184 .. 758 783 .. 750 789 .. 0.80
Alignments for each domain:
== domain 1 score: 1.7 bits; conditional E-value: 0.0072
TIGR00471 29 mleaeieevdees.kkikleinpnRpDllsveGvarslrgylgiekg.lksy..lskksevkllvdesvlqiRPfiv 101
+++++ ++ + ++++ nR D l+ + ++l +y+ e + l++ + kk + +l +d v q++ i
MMSYN1_0528 152 YIGSDVKQIIGLDdYLFEIDLTLNRSDCLASFQILKELANYFDLEIKnLDNNfsDFKKNNLDLKIDL-VNQVKDQIK 227
3456666655444245789999999999999999999999998774414443113466677777776.666666555 PP
== domain 2 score: 55.3 bits; conditional E-value: 4.3e-19
TIGR00471 279 f...........levsveeinrllGldlsadeiaesLkkmrldaeskdeklkvviPayRvDilhevDviEdvaigyglnklepelpkiaaigelk.pl 364
le++ +ein llG++l+ +i+++ k++ ++ ++kd+ l +i R Di + D+ E+va y+++k++ e+p +++ +++ +l
MMSYN1_0528 395 KilkqtfknkqsLEIKLNEINDLLGTNLTIKQIKSLFKHLDFKITNKDDLLDFQIDQNRIDITSKNDLCEEVARLYSYDKID-EVPLSFTSFKKAkNL 491
033333366667*********************************************************************6.899999987654488 PP
TIGR00471 365 e.kvsdlireimvglgfqEvisltlts..eeelfkklriednndvkvanPlteeyeivRksllpklletlkenkk.kelPqkiFEvGdvvlkdeesee 458
+ k+++ + + +glgf + ++ lts e+++++ ++i ++++++ Pl++ ++ R+ l l+++ n+ ++ k+FE+ d+ +++++
MMSYN1_0528 492 NlKLENKLTNYLIGLGFNNTKTYSLTSlnEAKYWNLFNI--SEFINLVSPLSNLRQTYRTNLSKSLIDVAIFNHSiNNKELKLFEIADIYDL-NNLKQ 586
85788999************9999997314445555555..579***********************99888876245567*******8644.45555 PP
TIGR00471 459 rsrvvtkl 466
r+ v+
MMSYN1_0528 587 RHLVFLTS 594
54444332 PP
== domain 3 score: -3.4 bits; conditional E-value: 0.26
TIGR00471 357 aigelkplekvsdlireimv....glgfqEvisltlts 390
++ e+k+l+k++++ r++ + +l++q v+ + l++
MMSYN1_0528 694 SFIEAKTLSKFQSSSRDLTIdisnDLTYQKVLFNALSD 731
56778888888888886554111168899999888875 PP
== domain 4 score: -2.9 bits; conditional E-value: 0.18
TIGR00471 159 dikFvPldsdeEltlaeilEehkkgi 184
i+Fv d d+ lt +ei+ e +k i
MMSYN1_0528 758 TIQFVFNDLDHQLTENEINQEFEKII 783
58899999999999999999888766 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (794 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 364 (0.0811052); expected 89.8 (0.02)
Passed bias filter: 69 (0.0153743); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.22
# Mc/sec: 5182.81
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0528 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0529 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0529.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0529/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0529 [L=350]
Description: pheRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.3e-99 329.5 2.5 2.3e-97 324.1 2.5 2.0 1 TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
1.3e-33 114.3 5.7 1.7e-19 67.8 0.0 2.5 2 TIGR00469 pheS_mito: phenylalanine--tRNA ligase
5.4e-08 29.7 0.2 1.2e-05 21.9 0.0 2.1 2 TIGR00470 sepS: O-phosphoserine--tRNA ligase
3.3e-05 21.1 0.1 6.6e-05 20.1 0.0 1.5 2 TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, re
0.00023 17.7 3.7 0.00033 17.2 3.7 1.2 1 TIGR00471 pheT_arch: phenylalanine--tRNA ligase, beta subuni
0.00038 17.5 9.2 0.0011 16.0 0.1 2.9 3 TIGR00442 hisS: histidine--tRNA ligase
0.00039 18.4 3.2 0.00061 17.8 3.2 1.2 1 TIGR01990 bPGM: beta-phosphoglucomutase
Domain annotation for each model (and alignments):
>> TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 324.1 2.5 3.5e-100 2.3e-97 2 323 .. 39 346 .. 38 347 .. 0.94
Alignments for each domain:
== domain 1 score: 324.1 bits; conditional E-value: 3.5e-100
TIGR00468 2 lkellkklkkvkkeeekekliklikevkeeleeeltklkkellkaeaekklkfrkydvklpakkiasgklhpltkvieeikeiflelgftvekgpeve 99
l+++lk++k++++++ k++++kl+++++ e+ ++l++++++l+++e+ kl+++k+dv+l++++++ g+ h l+ vieei +if+e+gf++++g e+e
MMSYN1_0529 39 LTTILKSIKTISSDK-KQEIGKLANQIRVEIINQLNEKQEQLKNKELLVKLEKEKIDVTLTNSSLKFGSKHVLNIVIEEISDIFTEIGFEMVSGTEIE 135
577899999999999.********************************************************************************** PP
TIGR00468 100 tefynfdaLfiPqdHpaRdmqDtFylkdvadavkkaveegketgsrgwryefdeevarkllLRThtta......vqlraleeee..nppirifsigrv 189
++ ynf+ L++P dHpaRdmqDtFyl++ +l+LRTh+t ++l++l + ++++ ++s g+v
MMSYN1_0529 136 SDLYNFQKLNLPVDHPARDMQDTFYLDN------------------------------NLVLRTHCTNmtsrmlTKLASL---KteDNNLAVISYGNV 200
****************************..............................9********9555333333333...2446789******** PP
TIGR00468 190 fRrdavdatHlpeFhQveglvvdknvslknLkglleeflkklfge.tevrfrpsyfPfTepSvEvdvklve..gkg........WlEvlgaGivrpev 276
+Rrd++datH+++F+Q++g vv +++s++nLk++l+ ++++lf + +++r rpsyfPfTepSvEvdv++++ kg W+E+lgaG+++++v
MMSYN1_0529 201 YRRDDDDATHSHQFMQIDGFVVGNKISFANLKWILKYMCQRLFNKdINIRLRPSYFPFTEPSVEVDVSCFKcdSKGcfickktgWIEILGAGMINEHV 298
*********************************************9***********************9965555********************** PP
TIGR00468 277 lealGieke.lkvlafGlgieRlamlkygikdiRdlyendlkflkqfk 323
l+ G++++ ++lafG+gieR+amlk++i++iR++yen++kfl+qfk
MMSYN1_0529 299 LKLNGLDPTkCSGLAFGIGIERIAMLKFNISNIRNFYENNVKFLEQFK 346
********99************************************97 PP
>> TIGR00469 pheS_mito: phenylalanine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.5 1.3 1.8e-16 1.2e-13 30 158 .. 96 222 .. 84 235 .. 0.80
2 ! 67.8 0.0 2.6e-22 1.7e-19 254 343 .. 244 345 .. 221 348 .. 0.84
Alignments for each domain:
== domain 1 score: 48.5 bits; conditional E-value: 1.8e-16
TIGR00469 30 klvdaskhlkedhplsilrdliekklysvdrlfkvfdnlkpvvtvqenfdsllipkdhvsrsksdtyyinethllrahtsaheleliskild.dsdni 126
l+++s+++ +h l+i+ + i + + + f++ + + nf++l +p dh++r+ dt+y++++ +lr+h + +++k ++++
MMSYN1_0529 96 TLTNSSLKFGSKHVLNIVIEEISDIFTEIG--FEMVSGT-EIESDLYNFQKLNLPVDHPARDMQDTFYLDNNLVLRTHCTNMTSRMLTKLASlKTEDN 190
677778888888888888888888887664..6665544.3566788********************************9999888888654122333 PP
TIGR00469 127 ksgflvsaevyrrdeidkthypvfhqaegaav 158
+ + + ++vyrrd+ d th f q++g v
MMSYN1_0529 191 NLAVISYGNVYRRDDDDATHSHQFMQIDGFVV 222
44567789********************9877 PP
== domain 2 score: 67.8 bits; conditional E-value: 2.6e-22
TIGR00469 254 pkelkvrwvdayfpftapswelevy.f...........kdewlellGcGlirqevllraGvkqsetiGyafGlGlerlamllfeipdirllwsrderf 339
k++ +r +yfpft+ps e++v f k w+e+lG G+i ++vl+ G+ ++++ G afG+G+er+aml f+i +ir ++ ++ +f
MMSYN1_0529 244 NKDINIRLRPSYFPFTEPSVEVDVScFkcdskgcfickKTGWIEILGAGMINEHVLKLNGLDPTKCSGLAFGIGIERIAMLKFNISNIRNFYENNVKF 341
5888999999************9842322222222333568********************************************************* PP
TIGR00469 340 lrqf 343
l+qf
MMSYN1_0529 342 LEQF 345
***9 PP
>> TIGR00470 sepS: O-phosphoserine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.9 0.1 0.0014 0.88 9 69 .. 70 129 .. 59 144 .. 0.82
2 ! 21.9 0.0 1.9e-08 1.2e-05 180 340 .. 162 334 .. 148 342 .. 0.85
Alignments for each domain:
== domain 1 score: 5.9 bits; conditional E-value: 0.0014
TIGR00470 9 lelaekdfeaawkeskellkekhidekyprlkfefGkehplfetierlreaylrlGfsevv 69
+l ek+ + ke l++++id +fG +h+l ie + + + ++Gf+ +v
MMSYN1_0529 70 NQLNEKQEQLKNKELLVKLEKEKIDVTLTNSSLKFGSKHVLNIVIEEISDIFTEIGFE-MV 129
5666666666667777788999999999999**************************6.44 PP
== domain 2 score: 21.9 bits; conditional E-value: 1.9e-08
TIGR00470 180 sstltlrsh...mtsGwfitlssiadklklplklfsidrcfrreqkedasrlmtyfsascvvvdeevsvddGkavaeglleqlGfekfrfrkdekksk 274
++l lr+h mts + l s++ l ++s +rr++ +da++ + vv++++s + k + + + ++l + +++r
MMSYN1_0529 162 DNNLVLRTHctnMTSRMLTKLASLKT-EDNNLAVISYGNVYRRDD-DDATHSHQFMQIDGFVVGNKISFANLKWILKYMCQRLFNKDINIRLRPSYFP 257
56788888844466777777777654.45689999*******985.89*********************************99988888888888888 PP
TIGR00470 275 yyipetqtevyayhpklk........ewievatfGvyspialakydid...vevmnlGlGverlamilygyedvrkm 340
+ p + +v ++ k +wie+ G+ l ++d + +G+G+er+am+ ++ +++r++
MMSYN1_0529 258 FTEPSVEVDVSCFKCDSKgcfickktGWIEILGAGMINEHVLKLNGLDptkCSGLAFGIGIERIAMLKFNISNIRNF 334
99999999**9999988888999999****************999998322356889****************9985 PP
>> TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.2 0.2 1.3 8.4e+02 173 181 .. 58 66 .. 17 93 .. 0.50
2 ! 20.1 0.0 1e-07 6.6e-05 14 128 .. 113 232 .. 105 251 .. 0.81
Alignments for each domain:
== domain 1 score: -3.2 bits; conditional E-value: 1.3
TIGR00443 173 realerkdl 181
++ ++ ++
MMSYN1_0529 58 GKLANQIRV 66
222222222 PP
== domain 2 score: 20.1 bits; conditional E-value: 1e-07
TIGR00443 14 ierkleklfaswGYqeietPvlEylevllaklg.dleekvfklvdsk..grvLaLRpdmTasiaRavs..trlkdqelplRlsyagkvfraeekergk 106
+ ++++++f++ G+++++ +E +kl+ ++ + ++d+ ++ L+LR T R++ ++lk+++ l + g+v+r++++++++
MMSYN1_0529 113 VIEEISDIFTEIGFEMVSGTEIESDLYNFQKLNlPVDHPARDMQDTFylDNNLVLRTHCTNMTSRMLTklASLKTEDNNLAVISYGNVYRRDDDDATH 210
567899*****************75544555666667777777776456****************88634689999999******************* PP
TIGR00443 107 sreftQvGvEliGaksleaDaE 128
s++f+Q + ++G+k + a++
MMSYN1_0529 211 SHQFMQIDGFVVGNKISFANLK 232
******9888888877666655 PP
>> TIGR00471 pheT_arch: phenylalanine--tRNA ligase, beta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.2 3.7 5.1e-07 0.00033 290 497 .. 32 249 .. 4 264 .. 0.75
Alignments for each domain:
== domain 1 score: 17.2 bits; conditional E-value: 5.1e-07
TIGR00471 290 llGldlsadeiaesLkkmrldaeskdeklkvviPayRvDilhevD.viEdvaigyglnklepel......pkiaaigelkplekvsdlireimvglgf 380
+G d s+ +i +s+k ++ d +++ kl +i Rv+i+ +++ E+ ++ l kle+e + ++ +g ++ l+ v + i +i ++gf
MMSYN1_0529 32 FIGKDSSLTTILKSIKTISSDKKQEIGKLANQI---RVEIINQLNeKQEQLKNKELLVKLEKEKidvtltNSSLKFGSKHVLNIVIEEISDIFTEIGF 126
577888888888888777666665555555544...666666554134666666666777666411111123345666779999************** PP
TIGR00471 381 qEvisltltseeelfkklrie.dnndvkvanPlteeye.ivRk...sllpklletlkenkkkelPqkiFEvGdvvlkdeeseersrvvtklavlitss 473
v + s+ +f+kl++ d++ ++ + ++ + ++R+ + ++l l k ++ + G+v +d++ +++s +++++ ++++
MMSYN1_0529 127 EMVSGTEIESDLYNFQKLNLPvDHPARDMQDTFYLDNNlVLRThctNMTSRMLTKLASLKTEDNNLAVISYGNVYRRDDDDATHSHQFMQIDGFVVGN 224
999999*************97255557777777777661557522246678999999***************************************** PP
TIGR00471 474 eanfneiksivaallrel.gieyei 497
+++f ++k+i +++ + l + +++i
MMSYN1_0529 225 KISFANLKWILKYMCQRLfNKDINI 249
*************988753333333 PP
>> TIGR00442 hisS: histidine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.1 5.5 0.057 37 152 227 .. 9 90 .. 1 113 [. 0.60
2 ! 16.0 0.1 1.7e-06 0.0011 55 140 .. 132 234 .. 89 251 .. 0.73
3 ? 0.6 0.0 0.078 50 294 311 .. 307 324 .. 287 341 .. 0.79
Alignments for each domain:
== domain 1 score: 1.1 bits; conditional E-value: 0.057
TIGR00442 152 lkevtleinslgilegrle..ls...yreallryldkkldklgedsvrrlek..nplrildskaeklkellke..apkildflke 227
l+++++++ +++l++ +e + + ++l+ +l++ + +++d+++++ k n++r+ + +++l+e ++ ++++l +l++
MMSYN1_0529 9 LNNFKVKLELVKDLNSWEElkKEfigKDSSLTTILKS-IKTISSDKKQEIGKlaNQIRV--EIINQLNEKQEQlkNKELLVKLEK 90
4678888888888888888641256588888888888.889999999988773344332..222222222222212333333333 PP
== domain 2 score: 16.0 bits; conditional E-value: 1.7e-06
TIGR00442 55 tdivekemYsfed................kggrslaLRpelTapvvRavvenklelkk..pfklyyigpvFRyErpqkGRyRqFhQldvevvGsespl 134
t+ +e ++Y+f++ +++l LR T + R++ + + +++ + ++++g+v+R++ + qF+Q+d vvG++
MMSYN1_0529 132 TE-IESDLYNFQKlnlpvdhpardmqdtfYLDNNLVLRTHCTNMTSRMLTKLASLKTEdnNLAVISYGNVYRRDDDDATHSHQFMQIDGFVVGNKISF 228
33.6677777777666666665554333333599***************9988888775569999****************************99888 PP
TIGR00442 135 adaeii 140
a++ i
MMSYN1_0529 229 ANLKWI 234
777665 PP
== domain 3 score: 0.6 bits; conditional E-value: 0.078
TIGR00442 294 ekvpavGfaiGieRllll 311
+k ++ f+iGieR+++l
MMSYN1_0529 307 TKCSGLAFGIGIERIAML 324
5677888999*****886 PP
>> TIGR01990 bPGM: beta-phosphoglucomutase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.8 3.2 9.6e-07 0.00061 45 115 .. 33 102 .. 12 125 .. 0.82
Alignments for each domain:
== domain 1 score: 17.8 bits; conditional E-value: 9.6e-07
TIGR01990 45 vsReesleailkkakkkyseeekeelaerknekYvellkeltpedvlpgikelleelkkkkikialasask 115
++++ sl++ilk+ k +s+++k+e+ + n+ ve++++l++++ kell +l+k+ki ++l+ +s
MMSYN1_0529 33 IGKDSSLTTILKSIKT-ISSDKKQEIGKLANQIRVEIINQLNEKQEQLKNKELLVKLEKEKIDVTLTNSSL 102
78999******98765.9************************999888889***************99885 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (350 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 368 (0.0819964); expected 89.8 (0.02)
Passed bias filter: 135 (0.0300802); expected 89.8 (0.02)
Passed Vit filter: 19 (0.00423351); expected 4.5 (0.001)
Passed Fwd filter: 7 (0.00155971); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.22
# Mc/sec: 2284.61
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0529 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0530 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0530.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0530/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0530 [L=202]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (202 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 307 (0.0684046); expected 89.8 (0.02)
Passed bias filter: 80 (0.0178253); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1526.74
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0530 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0531 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0531.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0531/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0531 [L=1482]
Description: efflux 1=Unknown Efflux
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1482 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 487 (0.108512); expected 89.8 (0.02)
Passed bias filter: 62 (0.0138146); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.22
# Mc/sec: 9673.71
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0531 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0535 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0535.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0535/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0535 [L=554]
Description: argRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-126 421.4 22.8 1.9e-126 420.7 22.8 1.3 1 TIGR00456 argS: arginine--tRNA ligase
9.8e-12 41.6 0.5 8e-08 28.7 0.4 2.4 2 TIGR00422 valS: valine--tRNA ligase
3.4e-06 24.0 1.2 3.4e-06 24.0 1.2 3.1 3 TIGR00398 metG: methionine--tRNA ligase
1.6e-05 22.1 15.6 0.0018 15.4 1.7 2.7 2 TIGR00435 cysS: cysteine--tRNA ligase
2e-05 20.9 1.2 2e-05 20.9 1.2 2.1 2 TIGR00392 ileS: isoleucine--tRNA ligase
Domain annotation for each model (and alignments):
>> TIGR00456 argS: arginine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 420.7 22.8 2.1e-129 1.9e-126 6 569 .] 10 554 .] 5 554 .] 0.94
Alignments for each domain:
== domain 1 score: 420.7 bits; conditional E-value: 2.1e-129
TIGR00456 6 keeikealekagaskeseilveetpnkefgdyasniafelakelkkapkeiaeeiveklktkeiiekveaagp.finfflspqklleklikkileqke 102
+++k++ +k+++ ke + +e +n++ g ++s i++ k+ +k+p e+ae ++l + + ++++a+p f+n+ ++p + l+++i ++l+ k
MMSYN1_0535 10 YNDLKNICQKLNITKE--PIIEINKNNTPGLLSSSICLISSKQVNKKPLELAEIFKQELLLTNSYLNIDIAAPgFLNVLVKP-EILSNVISNVLSLKS 104
6789999999988888..667777788999999*************************************************.99************* PP
TIGR00456 103 kyGskklkkkkiviefsSaNpakplHvGHlRsaiiGdslarileflGydvlreyyvnDmGrqigllvlslekagnekkneavkkedhalegv.yvein 199
kyG+ ++++k+i ie++SaNp++ lHvGH+R+a+iG +l ++++++Gy+v +eyyvnD+G+qi++l++ + + ++ n+ kk+++ ++g y + +
MMSYN1_0535 105 KYGNLEKQNKTINIEYVSANPTGYLHVGHARNAVIGSVLVNLFKKAGYNVQTEYYVNDAGNQINVLAVTVFVHYLQALNIDAKKPENCYAGDmYEDLA 202
***************************************************************************************99877588888 PP
TIGR00456 200 kkleedeeleeearellvkleegdekliklwkrl.velaleeiketlkrlnvkfdefkvesesvkngklkkvledLk.ekglveedgalvldltefgd 295
k + + ++ ++ + + d ++ l+k++ +++ l+ ik++l+ +nvk+ ++++e e++ +++kvl+ + + +l+++d+al l++t+fgd
MMSYN1_0535 203 KIIINKYN-DQFKDIKYTDNKILDDNVHSLFKQIsIDYFLKIIKQQLADFNVKIKHWSSEQEVYDTHQIEKVLKLYEsKDALYYKDDALFLKTTQFGD 299
88888877.2222223334444567899999986379****************************************999****************** PP
TIGR00456 296 kekdvvlqksdgtslYltrDiayhlekler.gfdkliyvlgsdhklhikqlfaileklglekkkelehlefglvklkslktRkGkvisldelldeask 392
+ kd+vl+ksd+t++Y+ D+a h+ + +r ++dkli+v+g dh+++ik++ a l +lg +++ le+ ++++v+l + d +++sk
MMSYN1_0535 300 D-KDRVLVKSDKTYTYILPDLATHNLRIKRtKADKLINVWGGDHHGYIKRMQAGLALLG-NDPDILEIQMVQMVRLIK-----------DGSEYKMSK 384
9.9********************************************************.******************...........********* PP
TIGR00456 393 ragkvitkkkdleedekekvaeavglgAvryallskkrekdiefdwd.ealsfegntvpYiqYahaRirsilr.kaeidgekeiaadlllleekekeL 488
r g ++ +++e vg++A+ry l+sk+ ++++++d+d l++++n+v+Y qYa aR++sil+ ++ + + +i++ +ll ++ke+eL
MMSYN1_0535 385 RKGTAVWLV---------DILELVGVDALRYMLASKSSNSHMDLDLDlITLKNSSNPVYYAQYATARCHSILNqAKTKKITPLIKQTNLLNNPKEIEL 473
*******99.........9****************************99************************444556677888888888******* PP
TIGR00456 489 vklllqfpevieeaaeerephvltnYlyelaklfssfYkackvldaeneelakaRLkllkatrkvLknaLelLgieaverm 569
+ +l++f+evi+++a++r + +++Y+++++k f+s+Y+++k++d+++ +l+k RL ++ka+ +vLkna+ ++gi++v m
MMSYN1_0535 474 LLILDNFKEVIKNSANNRSTQQICDYIQNICKIFHSYYAEIKIIDENDLQLTKLRLGFIKAILQVLKNAFFIIGIQPVVEM 554
****************************************************************************99777 PP
>> TIGR00422 valS: valine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.5 0.0 2.9e-05 0.026 35 74 .. 116 155 .. 98 171 .. 0.83
2 ! 28.7 0.4 8.9e-11 8e-08 513 650 .. 368 507 .. 347 550 .. 0.67
Alignments for each domain:
== domain 1 score: 10.5 bits; conditional E-value: 2.9e-05
TIGR00422 35 fiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvl 74
i n+TG lH+GHa + ++ +l+ + g+nv
MMSYN1_0535 116 INIEYVSANPTGYLHVGHARNAVIGSVLVNLFKKAGYNVQ 155
555566679********************99999999985 PP
== domain 2 score: 28.7 bits; conditional E-value: 8.9e-11
TIGR00422 513 vlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalva.aGrDinldlkkveaarkFln.Klwnasrfv.lmnledkkeleegeeklsla 607
v + l++d KmSK +g + +d++e G+DalR++la++++ + D+ ldl ++++++ + + +r + n ++k+++ ++++l+
MMSYN1_0535 368 VQMVRLIKDGSEYKMSKRKGTAVWLVDILELVGVDALRYMLASKSSnSHMDLDLDLITLKNSSNPVYyAQYATARCHsILNQAKTKKITPLIKQTNLL 465
66778999**********************************99983567*****9999999884431344444443033333345555566666666 PP
TIGR00422 608 drwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwy 650
+ +l + +++e +++ + +++++ ++i +++c +
MMSYN1_0535 466 NNPKEIELLLILDNFKEVIKNSANNRSTQQICDYI-QNICKIF 507
66666666666666666666666666666666664.3444433 PP
>> TIGR00398 metG: methionine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.0 0.2 0.018 16 11 40 .. 126 155 .. 115 173 .. 0.77
2 ? -0.9 0.4 0.14 1.2e+02 67 116 .. 237 286 .. 233 296 .. 0.86
3 ! 24.0 1.2 3.8e-09 3.4e-06 325 448 .. 379 506 .. 363 543 .. 0.76
Alignments for each domain:
== domain 1 score: 2.0 bits; conditional E-value: 0.018
TIGR00398 11 ngkpHlGhllttilaDvlarykrlrGeevl 40
g +H+Gh+++ +++ vl+ + G++v
MMSYN1_0535 126 TGYLHVGHARNAVIGSVLVNLFKKAGYNVQ 155
3668**************999999999885 PP
== domain 2 score: -0.9 bits; conditional E-value: 0.14
TIGR00398 67 vdklaeefkklfkllnisfdrFirTtdeehkeivqkifekllenGyiyek 116
+d +++k++++ +n++ ++++ ++ ++++++k+ + ++ +y k
MMSYN1_0535 237 IDYFLKIIKQQLADFNVKIKHWSSEQEVYDTHQIEKVLKLYESKDALYYK 286
6777889999999**********999999999999999988888888866 PP
== domain 3 score: 24.0 bits; conditional E-value: 3.8e-09
TIGR00398 325 gkkmSkSkgnvvdpedllarygadilRYyllkevp.lekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvkea.....seedekll 416
+ kmSk kg+ v+ d+l+ g+d+lRY l+++++ + Dld+ l +++ N ++ + + R+ ++ ++ +k+ ++ ++++ +ll
MMSYN1_0535 379 EYKMSKRKGTAVWLVDILELVGVDALRYMLASKSSnSHMDLDLDLITLKNSSNPVYYAQYA--TARCHSILNQAKTKKITPLIKQtnllnNPKEIELL 474
57*****************************99886889*************998888775..67888888877777776655554666655555566 PP
TIGR00398 417 kkieealekidealekfefkkaleeilklvse 448
+++ e+i++ ++++ ++ ++ i ++ +
MMSYN1_0535 475 LILDNFKEVIKNSANNRSTQQICDYIQNICKI 506
66666666666666666666666555555544 PP
>> TIGR00435 cysS: cysteine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.2 6.5 3.6e-05 0.033 14 105 .. 109 254 .. 96 308 .. 0.61
2 ! 15.4 1.7 2e-06 0.0018 264 375 .. 380 488 .. 372 541 .. 0.62
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 3.6e-05
TIGR00435 14 feplsen.kvkiYvCGpTvYdasHlGhaRtlvvfDvlrrilqylgYdvqyvqNiTDidDKiikrAreeelteeev....................... 87
+e++++ +++ + pT Y +H+GhaR++v+ vl ++ + +gY+vq + D +i A+ + +
MMSYN1_0535 109 LEKQNKTiNIEYVSANPTGY--LHVGHARNAVIGSVLVNLFKKAGYNVQTEYYVNDAGNQINVLAVTVFVHYLQAlnidakkpencyagdmyedlaki 204
44444445555566677765..9**************************8888888887776666654332222235566666666666666666555 PP
TIGR00435 88 ................................serfieayledleaLnvl 105
++ f++ +++l nv+
MMSYN1_0535 205 iinkyndqfkdikytdnkilddnvhslfkqisIDYFLKIIKQQLADFNVK 254
55555555555555555555555555555555555555555555555555 PP
== domain 2 score: 15.4 bits; conditional E-value: 2e-06
TIGR00435 264 eKmSKSlgNfitikdllkkfdpralRllllsvhyrnqldfseelleeaknalerlakalralkedlasakeiskkksplekefeaefvEaldddlnta 361
KmSK g + + d+l+ + alR++l+s+ ++ +d+ +l++ +++ + ++ +++ + +++ +kk++pl k+ + +++++
MMSYN1_0535 380 YKMSKRKGTAVWLVDILELVGVDALRYMLASKSSNSHMDLDLDLITLKNSSNPVYYAQYATARCHSILNQAKTKKITPLIKQTNLLN---NPKEIELL 474
5****************************************9999876655544444444444444434455666666444322111...12233333 PP
TIGR00435 362 ealavlselvkksn 375
l + e++k+s
MMSYN1_0535 475 LILDNFKEVIKNSA 488
34444444444444 PP
>> TIGR00392 ileS: isoleucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.5 0.4 0.066 59 48 78 .. 126 156 .. 103 263 .. 0.82
2 ! 20.9 1.2 2.2e-08 2e-05 606 739 .. 376 511 .. 366 540 .. 0.62
Alignments for each domain:
== domain 1 score: -0.5 bits; conditional E-value: 0.066
TIGR00392 48 nGeihlghalnkilKDiilryktmqGfkver 78
+G +h+gha n ++ +++ + G++v+
MMSYN1_0535 126 TGYLHVGHARNAVIGSVLVNLFKKAGYNVQT 156
6888888888888888888888888888764 PP
== domain 2 score: 20.9 bits; conditional E-value: 2.2e-08
TIGR00392 606 dekGrKMSKslgNvvdpekvikkyGaDvlRlyvass..dpaedlkfseeilkevaekllkilnntlrFlllyanLdkfkpeekslkveklkelDrw.. 699
d KMSK++g +v ++++ G+D+lR+ +as+ + dl ++ lk+ + + + t+r + L++ k+++ + +++++ l
MMSYN1_0535 376 DGSEYKMSKRKGTAVWLVDILELVGVDALRYMLASKssNSHMDLDLDLITLKNSSNPVYYAQYATAR---CHSILNQAKTKKITPLIKQTNLLNNPke 470
55567*****************************994444455555555555555554444444444...4455655554444444444433333200 PP
TIGR00392 700 ..ilsklnslveeveealekyeflkvlraledfvseeLsnwY 739
+l l+++ e +++ ++ + ++++ +++ ++ + ++Y
MMSYN1_0535 471 ieLLLILDNFKEVIKNSANNRSTQQICDYIQNICKI-FHSYY 511
012333444444444444444444445555544444.55555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (554 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 235 (0.0523619); expected 89.8 (0.02)
Passed bias filter: 88 (0.0196078); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 5 (0.00111408); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.22
# Mc/sec: 3616.22
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0535 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0536 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0536.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0536/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0536 [L=182]
Description: frr: ribosome recycling factor 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.2e-54 180.5 8.7 5.9e-54 180.3 8.7 1.0 1 TIGR00496 frr: ribosome recycling factor
Domain annotation for each model (and alignments):
>> TIGR00496 frr: ribosome recycling factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 180.3 8.7 1.3e-57 5.9e-54 3 176 .] 12 182 .] 10 182 .] 0.98
Alignments for each domain:
== domain 1 score: 180.3 bits; conditional E-value: 1.3e-57
TIGR00496 3 kmdkslealkeelskiRtgranpsllDkilveyygaktplkqlasvtvedartlvikpfdkslinaiekailkadlglnPssdGekirvnlPplteEr 100
+m +++a+ +l +iRtg+a+ +lDk++v+yyg+ +pl+q++++t+++++ ++ikp+d+++i + ai kadlglnP+sd + ir+++ plte+
MMSYN1_0536 12 QMRETIDAYVIHLRQIRTGKASGAILDKVMVNYYGSLMPLNQISQITTPEPNLIIIKPYDRNVITEAVGAIHKADLGLNPVSDATLIRIPIAPLTEDV 109
6888999******************************************************************************************* PP
TIGR00496 101 RkelvkvvkkiaEeakvavRnvRrDandkvkklekdkeisEdeekklkeeiqkitdeyikkideilkdkekellev 176
Rk+lvk+v+k+ E k+ +Rn+RrDa d++k k ++is d + +++iq+itd+ ik++d+++k+kekel+++
MMSYN1_0536 110 RKNLVKKVHKELEGYKIRIRNIRRDAIDEIK---KIENISKDLISDNEDQIQQITDKFIKQLDDLTKEKEKELMTI 182
*******************************...7789************************************86 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (182 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 381 (0.084893); expected 89.8 (0.02)
Passed bias filter: 137 (0.0305258); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1306.80
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0536 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0537 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0537.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0537/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0537 [L=237]
Description: pyrH_bact: UMP kinase 5=Equivalog Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-83 277.1 7.7 3e-83 277.0 7.7 1.0 1 TIGR02075 pyrH_bact: UMP kinase
7.9e-24 82.4 6.7 3.5e-23 80.3 6.7 1.9 1 TIGR02076 pyrH_arch: putative uridylate kinase
2.4e-08 31.5 1.7 6.8e-05 20.1 0.3 2.7 2 TIGR01027 proB: glutamate 5-kinase
6.7e-05 20.1 0.0 8.2e-05 19.8 0.0 1.3 1 TIGR00657 asp_kinases: aspartate kinase
0.00068 16.7 0.1 0.00084 16.4 0.1 1.3 1 TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional c
Domain annotation for each model (and alignments):
>> TIGR02075 pyrH_bact: UMP kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 277.0 7.7 3.3e-86 3e-83 1 233 [] 5 237 .] 5 237 .] 0.98
Alignments for each domain:
== domain 1 score: 277.0 bits; conditional E-value: 3.3e-86
TIGR02075 1 kkrvllKlsGeaLakekkfgidekrlekiakeikevvkkgvevgiviGGGnifRGkaakelgidrvkadylGmlatvinglalkdaleklgv.ktrvl 97
+k vllKlsGeaL+++ + +d+k l++ia++i +++k+g++++iviGGGni+RGk ++ g+d +ady+Gmlatv+nglal+++++k+g k +v+
MMSYN1_0537 5 YKTVLLKLSGEALKGDAE-VYDKKCLDNIASQIVHLAKNGLKLAIVIGGGNIWRGKLGENIGMDAINADYMGMLATVMNGLALESTITKMGYdKIKVY 101
689************999.9***********************************************************************93579** PP
TIGR02075 98 saielkkvaesyskkkaikalekgkvvifaaGtGnpffttDtaaalraieieadvilkgkkgvdGvysaDPkknkdakkyekltydevlkkelkvmDl 195
s++ +k+v++ y+ kka +++g + if++GtG ++fttDt a++raiei advil++k+gv Gvy++DPk+++dak++++lt++ev+ k+l++mDl
MMSYN1_0537 102 SSLPIKTVTDDYNFKKARIKMNEGFISIFVGGTGYSYFTTDTNATIRAIEIGADVILMAKNGVKGVYDKDPKQHSDAKFIKRLTHQEVVDKQLRIMDL 199
************************************************************************************************** PP
TIGR02075 196 tAlalakdnklpivvfnikeegalkkviegkkkgtlvs 233
tA +lakd +l+i vf+++ ++++ kv+e+k ++t+++
MMSYN1_0537 200 TAATLAKDANLKIEVFDMSGDNNIIKVLENKLESTIIE 237
***********************************995 PP
>> TIGR02076 pyrH_arch: putative uridylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 80.3 6.7 3.8e-26 3.5e-23 2 222 .] 9 237 .] 8 237 .] 0.85
Alignments for each domain:
== domain 1 score: 80.3 bits; conditional E-value: 3.8e-26
TIGR02076 2 vislgGsvlseee..idaekikefakilkklkde.lkvavvvGGGkvAReYievarelgasetllDeiGiaatRlNAllliaalkdkakpkv...... 90
+++l+G+ l+ + d ++++a+++ +l+++ lk+a+v+GGG++ R ++ +++g++ D++G+ at +N l l + + + ++k+
MMSYN1_0537 9 LLKLSGEALKGDAevYDKKCLDNIASQIVHLAKNgLKLAIVIGGGNIWRG--KLGENIGMDAINADYMGMLATVMNGLALESTITKMGYDKIkvyssl 104
689******99865578899**************9**************7..7889*****************************9999887333333 PP
TIGR02076 91 p.e......nleealelvsegkivv.mgGt.epghtTdavaallaEaleadllinitn.vdgvYdkDPkkykdakkfkklkaeelveiveksslkaGs 178
p + n+++a ++eg i + +gGt + +tTd+ a + a + ad+++++ n v gvYdkDPk++ dak +k+l+ +e+v+
MMSYN1_0537 105 PiKtvtddyNFKKARIKMNEGFISIfVGGTgYSYFTTDTNATIRAIEIGADVILMAKNgVKGVYDKDPKQHSDAKFIKRLTHQEVVDKQL-------- 194
12222222245566666777777653466625779*****************9999877************************9988655........ PP
TIGR02076 179 sevvDllaakiierskikvivvngedpenlvkvkkgeavgtiie 222
++Dl+aa++++ +++k+ v++ + +n++kv++++ ++tiie
MMSYN1_0537 195 -RIMDLTAATLAKDANLKIEVFDMSGDNNIIKVLENKLESTIIE 237
.79***************************************96 PP
>> TIGR01027 proB: glutamate 5-kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.4 0.1 0.00014 0.12 1 48 [. 6 53 .. 6 70 .. 0.90
2 ! 20.1 0.3 7.5e-08 6.8e-05 146 249 .. 142 234 .. 140 237 .] 0.79
Alignments for each domain:
== domain 1 score: 9.4 bits; conditional E-value: 0.00014
TIGR01027 1 kriVvKlGsssLteesgklkrsklaelveqvaklkkaGhevvivsSGa 48
k++ +Kl +L + + +++ l ++++q+ +l k+G ++ iv G+
MMSYN1_0537 6 KTVLLKLSGEALKGDAEVYDKKCLDNIASQIVHLAKNGLKLAIVIGGG 53
58999************************************9987775 PP
== domain 2 score: 20.1 bits; conditional E-value: 7.5e-08
TIGR01027 146 DtLsalvaalveAdlLvll.tdvdgLydadprtnpdAklieeveeieeelkavagssgssvGTGGmrtKleaaelAsragveviiasgekpekiadll 242
Dt + + a+ ++Ad++++ v+g+yd+dp++++dAk+i+++++ e k+++ l+aa+lA++a+ + + + ++i ++l
MMSYN1_0537 142 DTNATIRAIEIGADVILMAkNGVKGVYDKDPKQHSDAKFIKRLTHQEVVDKQLRIM------------DLTAATLAKDANLKIEVFDMSGDNNIIKVL 227
7778899999****977762569********************9999888888743............477888888888777777777777888887 PP
TIGR01027 243 edaavgt 249
e++ t
MMSYN1_0537 228 ENKLEST 234
7776655 PP
>> TIGR00657 asp_kinases: aspartate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.8 0.0 9.1e-08 8.2e-05 194 243 .. 141 191 .. 90 225 .. 0.87
Alignments for each domain:
== domain 1 score: 19.8 bits; conditional E-value: 9.1e-08
TIGR00657 194 SDltAallAaalkAdeveiytD.VdGiytaDPrivpeArrldeisyeEalE 243
+D+ A++ A ++Ad++ + ++ V+G+y DP++ ++A+ ++ ++ +E ++
MMSYN1_0537 141 TDTNATIRAIEIGADVILMAKNgVKGVYDKDPKQHSDAKFIKRLTHQEVVD 191
69*************99998866************************9875 PP
>> TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.4 0.1 9.3e-07 0.00084 161 243 .. 142 222 .. 82 237 .] 0.82
Alignments for each domain:
== domain 1 score: 16.4 bits; conditional E-value: 9.3e-07
TIGR00656 161 DltAallaaalkAdrveiyT.DVeGvyttDPrvveeakkidkisyeEalelAtlGakvlhpralelaveakvpilvrsskekee 243
D+ A++ a + Ad + + V+Gvy DP+ ++ak i++++ +E+++ ++++ a la++a+++i+v++ ++
MMSYN1_0537 142 DTNATIRAIEIGADVILMAKnGVKGVYDKDPKQHSDAKFIKRLTHQEVVD---KQLRIMDLTAATLAKDANLKIEVFDMSGDNN 222
8999999999999999887526*************************998...4577777788888888888888877655554 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (237 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 235 (0.0523619); expected 89.8 (0.02)
Passed bias filter: 105 (0.0233957); expected 89.8 (0.02)
Passed Vit filter: 16 (0.00356506); expected 4.5 (0.001)
Passed Fwd filter: 5 (0.00111408); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1620.68
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0537 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0539 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0539.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0539/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0539 [L=295]
Description: tsf: translation elongation factor Ts 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-93 309.3 15.8 6.3e-93 309.1 15.8 1.0 1 TIGR00116 tsf: translation elongation factor Ts
Domain annotation for each model (and alignments):
>> TIGR00116 tsf: translation elongation factor Ts
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 309.1 15.8 1.4e-96 6.3e-93 2 292 .. 1 295 [] 1 295 [] 0.96
Alignments for each domain:
== domain 1 score: 309.1 bits; conditional E-value: 1.4e-96
TIGR00116 2 saisaqlvkeLRektdAgmmdCkkALveangDlekAidllRekGiakaakkadrvAaeGvvllkvdndkavlveinsetDFvAknegfkelankllee 99
+a+ a+l+keLRe t+AgmmdCkkAL+ ++++++ Ai +lRe+G+akaakk drvAaeG+vl+k +++k v++e+nsetDFvAkne+f l+++++++
MMSYN1_0539 1 MAVDAKLIKELREITQAGMMDCKKALEASDNNIDNAIVWLRENGLAKAAKKTDRVAAEGIVLAKENDQKIVILEVNSETDFVAKNEKFLSLVDEIANA 98
6899********************************************************************************************** PP
TIGR00116 100 lkankittveelkkselenke.veeklaslvakigEnilvrriavleaksseviksYlHanariGvlveikgkseeelakdlAmHvAAvkPqfldqdd 196
l +++ +++ee + + + +e+ l s+ a+igE+i +rr+ +++ + +Y Han+r+ l+ + k + +a ++AmHvAA++P++++ d+
MMSYN1_0539 99 LLNSNASSLEEGLQVKTNSGLtIEQSLISATATIGEKIALRRFELVNKTEG-SSVIYNHANKRVSTLLVFDNKLDSTDAYNIAMHVAAMAPKYINMDQ 195
**************999998889********************99988766.5668****************************************** PP
TIGR00116 197 vsaevvkkereiekdqaelegk....PekilekiveGrlkkflaeisLleqkfvmddkktvkqllkeknakvtefvrfevGeGiekkaedfaeevaaq 290
+ +++ + e +i+k+qa+ ++k P ++le+i++G+l k lae+sLl+q fv+d++ +v+++lk+k++++++ +r+evGeGiek ++fa+evaaq
MMSYN1_0539 196 IPEDFKNAEMHIIKEQAKDDAKlqakPANVLENILKGKLSKRLAEVSLLDQLFVIDESFKVGDFLKSKHVSLVKMIRYEVGEGIEKVVTNFADEVAAQ 293
*********99999987776666666***********************************************************************9 PP
TIGR00116 291 vk 292
+k
MMSYN1_0539 294 LK 295
87 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (295 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 221 (0.0492424); expected 89.8 (0.02)
Passed bias filter: 73 (0.0162656); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 2017.30
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0539 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0540 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0540.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0540/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0540 [L=292]
Description: rpsB_bact: ribosomal protein S2 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.5e-88 291.2 4.5 1.2e-87 290.8 4.5 1.1 1 TIGR01011 rpsB_bact: ribosomal protein uS2
8e-28 95.2 2.3 6.9e-14 49.8 0.4 2.2 2 TIGR01012 uS2_euk_arch: ribosomal protein uS2
Domain annotation for each model (and alignments):
>> TIGR01011 rpsB_bact: ribosomal protein uS2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 290.8 4.5 5.5e-91 1.2e-87 2 224 .. 5 227 .. 4 228 .. 0.99
Alignments for each domain:
== domain 1 score: 290.8 bits; conditional E-value: 5.5e-91
TIGR01011 2 vslkelleagvhfGhqtrrwnPkmkkfifeerngvhiidLektlqllkeayelvkevvkeekkilFvgtkkqakeivkeeakrvgvayvneRWlGGmL 99
++ +el agv++Ghqt+rwnPkmk++i++ +n++hiidLekt+++l++a +l++++ ++++kilFvgtk+ k++vke+a r+g++y+n+RWlGG+L
MMSYN1_0540 5 ITREELSAAGVQYGHQTKRWNPKMKSYIYGVKNKNHIIDLEKTITHLNTAQKLLETLGSKQQKILFVGTKRSGKNAVKEAALRSGNFYINNRWLGGTL 102
56789********************************************************************************************* PP
TIGR01011 100 tnfktirksikkLkklekkeedgtadkltkkealllsrekekLekslgGikdlkklPdllvvidtkkekiavaearklkiPvvalvdtncdPdlvdyv 197
tn+kti +ik L ++e++e++g + +tkke++++ +ek kLek lgGik+++klP ++vv+d+k ++iav+ea+kl+iPv+a++dtn+dPd++dyv
MMSYN1_0540 103 TNLKTILIRIKALWEIEEEEKKGRLSLRTKKEQIKILKEKAKLEKALGGIKQMHKLPAAIVVVDPKGDEIAVKEAKKLNIPVIAICDTNADPDMIDYV 200
************************************************************************************************** PP
TIGR01011 198 iPgnddairsikLlvklladavleake 224
iPgndd s++L++++l +a +e+ +
MMSYN1_0540 201 IPGNDDLQESVNLIINILVEAYAEGAQ 227
**********************99975 PP
>> TIGR01012 uS2_euk_arch: ribosomal protein uS2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.0 0.1 8.8e-16 2e-12 5 101 .. 6 105 .. 2 110 .. 0.90
2 ! 49.8 0.4 3.1e-17 6.9e-14 106 172 .. 156 222 .. 150 232 .. 0.91
Alignments for each domain:
== domain 1 score: 45.0 bits; conditional E-value: 8.8e-16
TIGR01012 5 pvdkylaagvhlGtqnk..tkdmekfiykvrsdGlyvldlrktderlklaakflaaie..PedilvvsariygqkpvkkfakvtGakaiaGrfiPGtl 98
+++ aagv++G q+k + +m+ +iy v++ +++dl+kt +l+ a k+l ++ ++il v ++ g+++vk+ a + G +i r++ Gtl
MMSYN1_0540 6 TREELSAAGVQYGHQTKrwNPKMKSYIYGVKNKN-HIIDLEKTITHLNTAQKLLETLGskQQKILFVGTKRSGKNAVKEAALRSGNFYINNRWLGGTL 102
567899*******776622789********9875.89*******************9766899*********************************** PP
TIGR01012 99 tnp 101
tn
MMSYN1_0540 103 TNL 105
*95 PP
== domain 2 score: 49.8 bits; conditional E-value: 3.1e-17
TIGR01012 106 fvePevvvvtdPrvdkqalkeasevgiPivalvdtdnslrfvdlviPannkGkkslaliywllarei 172
++ P +vv dP+ d+ a+kea + +iP++a++dt+ +++d viP n+ ++s+ li +l +
MMSYN1_0540 156 HKLPAAIVVVDPKGDEIAVKEAKKLNIPVIAICDTNADPDMIDYVIPGNDDLQESVNLIINILVEAY 222
566999*****************************************************99997655 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (292 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 297 (0.0661765); expected 89.8 (0.02)
Passed bias filter: 123 (0.0274064); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 2206.97
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0540 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0541 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0541.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0541/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0541 [L=372]
Description: DnaJ_bact: chaperone protein DnaJ 5=Equivalog Protein folding
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.6e-124 412.7 8.6 4.1e-124 412.5 8.6 1.0 1 TIGR02349 DnaJ_bact: chaperone protein DnaJ
2.6e-33 113.4 22.5 5e-29 99.2 4.9 2.0 2 TIGR03835 termin_org_DnaJ: terminal organelle assembly prote
0.00076 17.6 2.1 0.0012 17.0 1.4 1.6 2 TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
0.0012 16.6 15.4 0.013 13.1 0.4 2.6 3 TIGR02642 phage_xxxx: uncharacterized phage protein
Domain annotation for each model (and alignments):
>> TIGR02349 DnaJ_bact: chaperone protein DnaJ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 412.5 8.6 3.7e-127 4.1e-124 1 353 [. 5 361 .. 5 362 .. 0.94
Alignments for each domain:
== domain 1 score: 412.5 bits; conditional E-value: 3.7e-127
TIGR02349 1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfea.......sefgd 91
dYYe+Lgvsk+Ase+ei++AYrklak+yHPD nk +++a++k+ eineA +vL d++kr+qYDqfgh++++g++g +++f++fe+ s f++
MMSYN1_0541 5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHNAFDGSSGF-SSNFADFEDlfsnmgsSGFSS 100
9*********************************.*************************************8776.667777777687666666666 PP
TIGR02349 92 igdifeeffgggggsgrr.rskarrgedlevelelsleeavkGvekeielerkekCetCkGsGakkgsklktCktCgGtGqvrkqqgtllgffqsqqt 188
+ +if++ffg+ +++ +++++g++++v++ l+++e ++G++k iel+ ++C+ C GsGa+++s++++C++C+GtG+v q+++ +++fq++++
MMSYN1_0541 101 FTNIFSDFFGS----NKSdYQRSTKGQSVSVDIYLTFKELLFGADKIIELDLLTNCSVCFGSGAESNSDISICNNCHGTGEVLIQKNMGFFQFQQSAK 194
88888888883....33448899*************************************************************************** PP
TIGR02349 189 CseCkGeGkiikekCkeCkGkgrvkekkkievkiPaGvedgerlrvegkGeagenggesGdLyvevkvkehkifere.gndllvevpisfvqailgee 285
C+ C+G Gkiik+kCk+CkGkg++ e++kiev+iP+G++ ++++++++kG+a+ n+g +GdL++++ +ke+k+fe +nd+l++++is+++ ilg+e
MMSYN1_0541 195 CNVCNGAGKIIKNKCKNCKGKGKYLERQKIEVNIPKGIRPNQQIKLSQKGHASINNGVNGDLIIDIYLKESKVFEIVnNNDILMTYNISYLDSILGNE 292
***************************************************************************861569***************** PP
TIGR02349 286 ievptlegkvklkipagtqsgevlrlkgkGvkklksk.krGdllvkvkvevPkklskeekelleelaee 353
i ++tl+g++k+k+p++++s+e + +++kG+ k+ +k krGdl++kv++ vPk+l+k+ekel+e++ e+
MMSYN1_0541 293 IIIKTLDGDIKYKLPKSINSNEFIIINNKGLYKSINKdKRGDLIIKVNIVVPKNLNKKEKELIEQIYEQ 361
******************************99887777***************************9886 PP
>> TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 99.2 4.9 4.5e-32 5e-29 1 102 [. 3 110 .. 3 126 .. 0.87
2 ! 20.3 9.6 3.3e-08 3.7e-05 651 811 .. 178 341 .. 163 364 .. 0.86
Alignments for each domain:
== domain 1 score: 99.2 bits; conditional E-value: 4.5e-32
TIGR03835 1 krDyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDreddldfdadvfdsffeeieksd..e 96
k+DyyevLg+++ a eqei++a+rkLak+yhPD nk +da + + einea dvL + +kr++yD++Gh+ D+ ++ + f+ f ++ s+
MMSYN1_0541 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHNAFDGSSGFSSNFADFEDLFSNMGSSGfsS 100
89****************************************************************************99999*******99997445 PP
TIGR03835 97 fddlt....d 102
f ++
MMSYN1_0541 101 FTNIFsdffG 110
7776533332 PP
== domain 2 score: 20.3 bits; conditional E-value: 3.3e-08
TIGR03835 651 nldetevnlvkeeevpqilllneqlkeikytrkvvdgnvesttneaitLeikLsitsqleisaifkGfGhdfgkgl.GDLkvvlkvipsnffq.iked 746
l+++++ ++++ + + n + k ik k g+ + i ++i i+++++i kG + g+ GDL + + +s+ f ++++
MMSYN1_0541 178 VLIQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERQKIEVNIPKGIRPNQQIKLSQKGHASINN-GVnGDLIIDIYLKESKVFEiVNNN 274
58999999999999999999***********************************************998865.555*****8888888777526999 PP
TIGR03835 747 dlhvaalvDPlvaynGGiidvfgivklikvkieggikvndlvkikdlGltkt..kykkGsLivqlvy 811
d+ + + l + G i + + ik k++ i+ n+ ++i++ Gl k k k+G+Li+++
MMSYN1_0541 275 DILMTYNISYLDSILGNEIIIKTLDGDIKYKLPKSINSNEFIIINNKGLYKSinKDKRGDLIIKVNI 341
***999999999999999*******************************77533789******9854 PP
>> TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.0 1.4 1.1e-06 0.0012 5 56 .. 18 65 .. 15 67 .. 0.76
2 ? -3.6 0.0 2.2 2.4e+03 36 61 .. 123 147 .. 111 150 .. 0.70
Alignments for each domain:
== domain 1 score: 17.0 bits; conditional E-value: 1.1e-06
TIGR00714 5 ekaLrkryrklQkqyHPD..vsksaqeqaaalqqStelNqAykTLkdplkRaey 56
e+ +r+ yrkl kqyHPD s a + e+N+A L d kR +y
MMSYN1_0541 18 EQEIRQAYRKLAKQYHPDlnKSPD------AHDKMVEINEAADVLLDKDKRKQY 65
78899*************333333......566777888888888887777776 PP
== domain 2 score: -3.6 bits; conditional E-value: 2.2
TIGR00714 36 qStelNqAykTLkdplkRaeyllkLq 61
qS + + y T k+ l a+ +++L
MMSYN1_0541 123 QSVSV-DIYLTFKELLFGADKIIELD 147
44444.57889999999999998885 PP
>> TIGR02642 phage_xxxx: uncharacterized phage protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.5 0.1 0.66 7.4e+02 67 104 .. 23 60 .. 12 67 .. 0.66
2 ! 13.1 0.4 1.2e-05 0.013 183 210 .. 151 179 .. 145 185 .. 0.90
3 ! 10.4 5.2 8e-05 0.09 177 210 .. 188 219 .. 181 225 .. 0.87
Alignments for each domain:
== domain 1 score: -2.5 bits; conditional E-value: 0.66
TIGR02642 67 kLlahiceqleksiapaaaeallklalnevlerlvdaq 104
+ + + +q++++ ++ ++ +ne+ + l+d
MMSYN1_0541 23 QAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKD 60
44556777888887777777777777777777666544 PP
== domain 2 score: 13.1 bits; conditional E-value: 1.2e-05
TIGR02642 183 kCPrCrgtgltlrrq.eeCdkCaGtGrlv 210
+C C g+g + + +C++C+GtG+++
MMSYN1_0541 151 NCSVCFGSGAESNSDiSICNNCHGTGEVL 179
7999*********999***********97 PP
== domain 3 score: 10.4 bits; conditional E-value: 8e-05
TIGR02642 177 kaaesqkCPrCrgtgltlrrqeeCdkCaGtGrlv 210
+ +s kC C g+g++ + ++C++C+G G+ +
MMSYN1_0541 188 QFQQSAKCNVCNGAGKIIK--NKCKNCKGKGKYL 219
56799************98..57********976 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (372 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 263 (0.0586007); expected 89.8 (0.02)
Passed bias filter: 107 (0.0238414); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 2543.85
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0541 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0542 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0542.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0542/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0542 [L=591]
Description: prok_dnaK: chaperone protein DnaK 5=Equivalog Protein folding
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-271 900.4 29.6 6.1e-271 897.9 29.6 1.8 1 TIGR02350 prok_dnaK: chaperone protein DnaK
1.4e-169 563.4 20.4 9.7e-156 517.7 15.3 2.0 2 TIGR01991 HscA: Fe-S protein assembly chaperone HscA
1.2e-19 68.5 5.3 1.2e-19 68.5 5.3 1.9 2 TIGR00904 mreB: cell shape determining protein, MreB/Mrl fam
1.4e-12 45.6 7.6 2.1e-11 41.7 0.1 3.7 4 TIGR02529 EutJ: ethanolamine utilization protein EutJ family
Domain annotation for each model (and alignments):
>> TIGR02350 prok_dnaK: chaperone protein DnaK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 897.9 29.6 5.4e-274 6.1e-271 1 594 [. 5 574 .. 5 576 .. 0.99
Alignments for each domain:
== domain 1 score: 897.9 bits; conditional E-value: 5.4e-274
TIGR02350 1 kiiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkleeveeeakkvpykvveaenevkv 98
kiiGidLGttnsvv+v+egg+p +++n+eG+rttPsvvafk++ +++vG +akrqavtnp n+++sik+++G++ + v
MMSYN1_0542 5 KIIGIDLGTTNSVVSVIEGGQPIILENPEGQRTTPSVVAFKNS-DIIVGGAAKRQAVTNP-NVVQSIKSKMGTTSK---------------------V 79
8****************************************99.****************.9**********5444.....................7 PP
TIGR02350 99 evedkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfd 196
++e+k+y+pe+isaeiL+++k++aea+lG+kvt+avitvPayfndaqr+atkdaG+iaGl+v+riinePtaaaLayGldk++k+e+ilv+dlGGGtfd
MMSYN1_0542 80 NLEGKDYSPEQISAEILRYMKNYAEAKLGQKVTKAVITVPAYFNDAQRKATKDAGTIAGLQVERIINEPTAAALAYGLDKQDKEETILVYDLGGGTFD 177
899*********************************************************************************************** PP
TIGR02350 197 vsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltra 294
vsil +g+g+f+v +t+G++kLGGd+fde+ii++l+ ++k+e +idLsk+kmalqrlk++aekaki+Lss+le+einlpfi++++sgp++++++ltr+
MMSYN1_0542 178 VSILAIGGGSFDVIATSGNNKLGGDNFDEEIIKWLLGKIKAEYNIDLSKEKMALQRLKDEAEKAKINLSSQLEVEINLPFIAMNESGPISFATTLTRS 275
************************************************************************************************** PP
TIGR02350 295 kfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvgkepnksvnPdevvaiGaaiqggvlkgevkdvlLldvtPLsLgi 392
+f++++++lv+ t++pvk+al+ ak+++sei+ev+lvGGstriPavqelvk+l++kepn+s+nPdevva+Gaa+qggvl+gev+d+lLldvtPLsLgi
MMSYN1_0542 276 EFNKITKHLVDLTIQPVKDALSAAKKTPSEINEVLLVGGSTRIPAVQELVKSLLNKEPNRSINPDEVVAMGAAVQGGVLAGEVTDILLLDVTPLSLGI 373
************************************************************************************************** PP
TIGR02350 393 etlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsi 490
et+Ggv+tkliernttiP+k++q+fsta+dnqpav+i+vlqGer +aadnkslg+f+Ltgi+paPrG+pqievtf+idanGi+svsakdk+t++e++i
MMSYN1_0542 374 ETMGGVMTKLIERNTTIPAKRTQIFSTATDNQPAVDINVLQGERAMAADNKSLGQFQLTGIQPAPRGIPQIEVTFEIDANGIVSVSAKDKNTNEEKTI 471
************************************************************************************************** PP
TIGR02350 491 titassglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeagdkleeeekekiekaveelkealkeedveekikakteelekale 588
ti++s++lse+e+erm+kea++na++d+ kk+++e++n+a+++i+ +e +l +agdk+++e+ke+ +k+v+e+ke +k+e++e+ +++k++ele+a++
MMSYN1_0542 472 TISNSGNLSEAEVERMIKEAQENAANDEVKKKNIELKNKAENYINIIETSLLQAGDKISAEQKEQSQKMVDEIKELVKNENYEA-LEQKMAELEQAMA 568
*********************************************************************************988.************9 PP
TIGR02350 589 klaeal 594
+ ae +
MMSYN1_0542 569 QAAEFA 574
988765 PP
>> TIGR01991 HscA: Fe-S protein assembly chaperone HscA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.3 0.3 5.8e-17 6.5e-14 2 75 .. 7 78 .. 6 85 .. 0.92
2 ! 517.7 15.3 8.6e-159 9.7e-156 102 584 .. 83 577 .. 76 590 .. 0.92
Alignments for each domain:
== domain 1 score: 49.3 bits; conditional E-value: 5.8e-17
TIGR01991 2 vGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsle 75
+GiDlGttns+v++++ g++++l++ eg+ + psvv +++ ++ vG +ak++a+++p n++ s+k mG + +
MMSYN1_0542 7 IGIDLGTTNSVVSVIEGGQPIILENPEGQRTTPSVVAFKNS-DIIVGGAAKRQAVTNP-NVVQSIKSKMGTTSK 78
9*************************************999.9*******99999887.79*********8754 PP
== domain 2 score: 517.7 bits; conditional E-value: 8.6e-159
TIGR01991 102 qgevtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk.aseglyavYDLGGGtFDvsi 198
++ +P ++saeiL+ +k+ ae +lg+++++avitvPAYF+daqr+atkdA+ +agl+v R++nePtaAA+AYGldk +e++++vYDLGGGtFDvsi
MMSYN1_0542 83 GKDYSPEQISAEILRYMKNYAEAKLGQKVTKAVITVPAYFNDAQRKATKDAGTIAGLQVERIINEPTAAALAYGLDKqDKEETILVYDLGGGTFDVSI 180
45789***********************************************************************977899**************** PP
TIGR01991 199 LklekGvFevlatgGdsaLGGDDfDralaklil....kkagleaelskeekkellkaaraakeaLtdaeevevevkl...egk...dlkaklsreele 286
L + G F+v+at+G+ +LGGD+fD+ + k++l + +++ + +k + l ++a++ak +L+++ eve+++ +++ ++ ++l+r e++
MMSYN1_0542 181 LAIGGGSFDVIATSGNNKLGGDNFDEEIIKWLLgkikAEYNIDLSKEKMALQRLKDEAEKAKINLSSQLEVEINLPFiamNESgpiSFATTLTRSEFN 278
*********************************44333344444445555667778899*************997442223322226899******** PP
TIGR01991 287 elieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepltdldPdevvAlGAalqadlLaknkrkedllLlDviPLsLGle 384
+++++lv+ t+++v++al+ a+ + +ei+ev+lvGGstr+p+v++ v++l +kep +++PdevvA+GAa+q +La++ ++ +lLlDv+PLsLG+e
MMSYN1_0542 279 KITKHLVDLTIQPVKDALSAAKKTPSEINEVLLVGGSTRIPAVQELVKSLLNKEPNRSINPDEVVAMGAAVQGGVLAGEVTD--ILLLDVTPLSLGIE 374
*****************************************************************************88776..9************* PP
TIGR01991 385 tmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakie 482
tmGG++ k+i RnttiP++++q F t +D+q a+ i v+qGeR +++d++sL++F+L gi p + G+ +i+vtf++Da+G++svsa++k t+ e++i+
MMSYN1_0542 375 TMGGVMTKLIERNTTIPAKRTQIFSTATDNQPAVDINVLQGERAMAADNKSLGQFQLTGIQPAPRGIPQIEVTFEIDANGIVSVSAKDKNTNEEKTIT 472
************************************************************************************************** PP
TIGR01991 483 vkpsygLsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadkdLlseeelkaikaaleklekaleeddaeaikaaiealeea...s 577
+++s +Ls+ e+e+m+k++ +na++D +++ e k ae+ ++++e++l + +d +s+e++++ ++ ++++++ ++++++ea+++++++le+a +
MMSYN1_0542 473 ISNSGNLSEAEVERMIKEAQENAANDEVKKKNIELKNKAENYINIIETSLLQAGDKISAEQKEQSQKMVDEIKELVKNENYEALEQKMAELEQAmaqA 570
*****************************************************************************************999862114 PP
TIGR01991 578 kefaarr 584
efa+++
MMSYN1_0542 571 AEFANKQ 577
5566555 PP
>> TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 68.5 5.3 1.1e-22 1.2e-19 5 302 .. 7 327 .. 3 354 .. 0.75
2 ? -3.4 2.5 0.82 9.2e+02 209 269 .. 488 549 .. 472 565 .. 0.62
Alignments for each domain:
== domain 1 score: 68.5 bits; conditional E-value: 1.1e-22
TIGR00904 5 lgidlGtantlvyvk..gkGivlsePsvvavekdkdakaksvlavGkeakemlgktPenikairPlkdGvia.......df...evtekmlkyfikkv 90
+gidlGt+n +v v g+ i+l++P + + a ++s + vG ak+ P+ +++i+ k G + d+ ++++++l+y+ +
MMSYN1_0542 7 IGIDLGTTNSVVSVIegGQPIILENPEGQRTTPSVVAFKNSDIIVGGAAKRQAVTNPNVVQSIKS-KMGTTSkvnlegkDYspeQISAEILRYMKNYA 103
8**********988612567***998877777777777788899**************9999986.44444311112224433246778888877766 PP
TIGR00904 91 lkrksllkpkvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveept.gsmvvdiGGGttevavislgG.....ivvsksirvaG 182
+ k +i+vP+ + +r+a k++ + aG + +i+ep aaa+ +l ++ + +v d+GGGt +v+++++gG i +s +++G
MMSYN1_0542 104 EAKLGQKVTKAVITVPAYFNDAQRKATKDAGTIAGLQVERIINEPTAAALAYGLDKQDKEeTILVYDLGGGTFDVSILAIGGgsfdvIATSGNNKLGG 201
66655566679*******************************************998876155788*************998777756778889**** PP
TIGR00904 183 deldeaiiky....irrkynlliG.erta.ekikieiGsayaeendeeeklevk....GrdlvtGlprtleldskevlealkepvseiveavkstlek 270
d++de iik+ i+ +yn+ + e+ a +++k e a+++ +++ ++e++ + + ++l+ +e ++ k+ v+ ++ vk +l +
MMSYN1_0542 202 DNFDEEIIKWllgkIKAEYNIDLSkEKMAlQRLKDEAEKAKINL-SSQLEVEINlpfiAMNESGPISFATTLTRSEFNKITKHLVDLTIQPVKDALSA 298
********985555799999966514554489999999999985.45566666522224555556777888999999999999999999999999987 PP
TIGR00904 271 tpPelaadiverGivltGGGallknldkllsk 302
++ ++i e ++l GG + + +++l++
MMSYN1_0542 299 AKK-TPSEINE--VLLVGGSTRIPAVQELVKS 327
764.4556655..6777777777766666655 PP
== domain 2 score: -3.4 bits; conditional E-value: 0.82
TIGR00904 209 ikieiGsayaeendeeeklevkGr..dlvtGlprtleldskevlealkepvseiveavkstle 269
ik +a ++ + +++++e+k + + ++ + +l ++++ ke+ +++v+++k ++
MMSYN1_0542 488 IKEAQENAAND-EVKKKNIELKNKaeNYINIIETSLLQAGDKISAEQKEQSQKMVDEIKELVK 549
33333444443.456666666554214555555555555677888888888888888887655 PP
>> TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.7 0.0 0.061 69 1 22 [. 8 28 .. 8 58 .. 0.81
2 ! 41.7 0.1 1.9e-14 2.1e-11 42 132 .. 92 188 .. 85 205 .. 0.85
3 ! 5.3 0.0 0.0025 2.8 191 237 .. 302 348 .. 268 350 .. 0.78
4 ? -3.0 0.6 0.84 9.4e+02 152 186 .. 528 564 .. 518 572 .. 0.59
Alignments for each domain:
== domain 1 score: 0.7 bits; conditional E-value: 0.061
TIGR02529 1 GvdlGtanivivvldednkPva 22
G+dlGt+n v+ v++ ++P++
MMSYN1_0542 8 GIDLGTTNSVVSVIE-GGQPII 28
89*****99999885.567776 PP
== domain 2 score: 41.7 bits; conditional E-value: 1.9e-14
TIGR02529 42 aveivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlqlkng......avvdvGGGttGisilkkGkviy 132
+ ei++ +k+ +e klG ++tka i+vP ++ + k++ + aGl+v ++++ePtaaa + l++ v d+GGGt +sil G +
MMSYN1_0542 92 SAEILRYMKNYAEAKLGQKVTKAVITVPAYFNDAQRKATKDAGTIAGLQVERIINEPTAAALAYGLDKQdkeetiLVYDLGGGTFDVSILAIGGGSF 188
57999*******************************************************999887643222222588************9886555 PP
== domain 3 score: 5.3 bits; conditional E-value: 0.0025
TIGR02529 191 ekqkvkdlylvGGassfsefedvfekelglevikpaepllvtPlgia 237
++++++ lvGG++ ++ +++++++ l++e ++ +p v +g a
MMSYN1_0542 302 TPSEINEVLLVGGSTRIPAVQELVKSLLNKEPNRSINPDEVVAMGAA 348
357899********************999999999888888777766 PP
== domain 4 score: -3.0 bits; conditional E-value: 0.84
TIGR02529 152 kisleeaeekkkekkkeeevfs..vvkPvvekmaeiv 186
kis e+ e+ +k ++ +e+ + + + +kmae+
MMSYN1_0542 528 KISAEQKEQSQKMVDEIKELVKneNYEALEQKMAELE 564
5677777766666555555443113456778888775 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (591 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 681 (0.151738); expected 89.8 (0.02)
Passed bias filter: 124 (0.0276292); expected 89.8 (0.02)
Passed Vit filter: 22 (0.00490196); expected 4.5 (0.001)
Passed Fwd filter: 5 (0.00111408); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.22
# Mc/sec: 3857.73
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0542 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0543 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0543.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0543/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0543 [L=200]
Description: grpE 4=Probable Protein folding
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.0015 15.5 5.2 0.002 15.1 5.2 1.2 1 TIGR02666 moaA: molybdenum cofactor biosynthesis protein A
Domain annotation for each model (and alignments):
>> TIGR02666 moaA: molybdenum cofactor biosynthesis protein A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.1 5.2 4.5e-07 0.002 144 253 .. 28 136 .. 8 143 .. 0.74
Alignments for each domain:
== domain 1 score: 15.1 bits; conditional E-value: 4.5e-07
TIGR02666 144 legieaaleaglkkvKlNtVvlkgvnddeivdlvefakekgvelrfiElmplgea..ekaeekevvsaaeilerleeafgelepveskeekepaeaar 239
i++ + ++lk KlNtV+l+ n +++++ +++ e++ +l + E+ +l+++ +k +e++ a+++ ++l + ++ l++v ++ +++ +a+
MMSYN1_0543 28 KTHIKKNQYLNLK-TKLNTVLLEVQNLKDLNETLKLKLESEKQLNLAEISNLTKKynQKESETKKYGASNLAKDLIQPLEILKKVVNAPNNNEVVQAY 124
4578899999999.***************************************996334444555667777788877777777766555543333333 PP
TIGR02666 240 vkleggkgeiGlIs 253
++g ++ i I+
MMSYN1_0543 125 --VKGFEMIINQIN 136
..677776666665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (200 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 646 (0.143939); expected 89.8 (0.02)
Passed bias filter: 94 (0.0209447); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1511.62
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0543 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0544 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0544.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0544/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0544 [L=340]
Description: hrcA: heat-inducible transcription repressor HrcA 5=Equivalog Regulation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.6e-101 336.7 17.5 5.1e-101 336.5 17.5 1.0 1 TIGR00331 hrcA: heat-inducible transcription repressor HrcA
0.00014 19.5 0.2 0.00029 18.4 0.2 1.5 1 TIGR00498 lexA: repressor LexA
Domain annotation for each model (and alignments):
>> TIGR00331 hrcA: heat-inducible transcription repressor HrcA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 336.5 17.5 2.3e-104 5.1e-101 1 337 [. 3 338 .. 3 339 .. 0.98
Alignments for each domain:
== domain 1 score: 336.5 bits; conditional E-value: 2.3e-104
TIGR00331 1 teRqkkiLkaiveeYiktgePVGSktllekynlelSsATIRnemadLEelGflekpHtSsGRiPtdkGyryYvdellkvsklteeekraikkqlskek 98
t+Rq kiL++ivee+ikt++PVGSk++le n+++SsATIRne a+LE++G+lek+HtSsGR+P++kGyryYvd+++k+++++ ++ +++ +ql + +
MMSYN1_0544 3 TNRQIKILQTIVEEFIKTNQPVGSKRILELLNMKISSATIRNESATLEHEGYLEKQHTSSGRTPSTKGYRYYVDNIMKLDSADYTRLKIYLNQLLDLR 100
79************************************************************************************************ PP
TIGR00331 99 keeedkvlkeaaelLseltkltavvlk.praeqsklkkieLisldenrvlavlvtdsgkvknkvielkeeiseedLervvnllnerLagatlseirek 195
k++ dk++++a+e++seltk+tavv+k ++ ++ klkkieLi l+e ++ +++++++g+v+nk+++lk ++ +dL+ + +l+++ L +++l+ei+++
MMSYN1_0544 101 KYDIDKTINYASEIISELTKMTAVVIKkQNIKDIKLKKIELILLSEFLASVLFIFSDGDVQNKMFNLK-DVALSDLKIAIKLFSDVLVDVKLDEIDQY 197
*************************998999************************************9.9**************************** PP
TIGR00331 196 ieeelselkaeleeledelvdllleilseeneeelyvdGlsnlleqpefked..ierirellelleskkllkklleealeekgvtvkigkensekele 291
+++ +++l +++++ l++++++il+++ne++ ++G++++le+pef+++ ++++ +l+e+l+ ++++ ++e++++++++++kig+e++ + ++
MMSYN1_0544 198 LNDLKHQLSLSIKQYDYVLNTFINTILESKNEQK-ETHGMRYMLENPEFNDTnkLKNAVKLVEQLSPFDWFNIAYESNKNMNKIAIKIGNEID-QIND 293
*********************************8.599**********99877799999999999****************************.9*** PP
TIGR00331 292 dlsvisskykigekavgalgviGPkrmdYervislvnyiaellsel 337
d+s+i+++ kig ++ ++l+++GPkr+dY++v +l+n+i+e+++++
MMSYN1_0544 294 DISMIATELKIG-NSSTVLTLVGPKRVDYNQVNQLMNLIIEIINTK 338
************.*****************************9985 PP
>> TIGR00498 lexA: repressor LexA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.4 0.2 1.3e-07 0.00029 4 62 .. 2 61 .. 1 66 [. 0.92
Alignments for each domain:
== domain 1 score: 18.4 bits; conditional E-value: 1.3e-07
TIGR00498 4 LterqrevldlikaeiestgypPsireiaralglr.spsaveehLkaLerKGyierkpgk 62
Lt+rq ++l+ i++e +t+ p + i + l+++ s+++++++ ++Le+ Gy+e++++
MMSYN1_0544 2 LTNRQIKILQTIVEEFIKTNQPVGSKRILELLNMKiSSATIRNESATLEHEGYLEKQHTS 61
9************999999999999*********868899***************98875 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (340 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 266 (0.0592692); expected 89.8 (0.02)
Passed bias filter: 61 (0.0135918); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 2569.76
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0544 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0545 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0545.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0545/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0545 [L=713]
Description: clpB 4=Probable Proteolysis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0 1078.2 18.5 0 1077.9 18.5 1.0 1 TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein Cl
1.7e-229 762.3 7.7 2.1e-229 762.0 7.7 1.0 1 TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
2.6e-222 738.0 15.0 4.2e-113 376.9 3.1 2.1 2 TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subun
4.8e-14 49.8 0.1 3.4e-08 30.5 0.1 2.5 2 TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
8.9e-09 32.6 0.3 0.0013 15.6 0.1 3.5 3 TIGR02928 TIGR02928: orc1/cdc6 family replication initiation
4e-08 30.6 3.7 0.00032 17.8 0.0 3.4 3 TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subu
9.5e-07 25.7 0.7 0.00023 17.9 0.3 2.4 2 TIGR00764 lon_rel: putative ATP-dependent protease
3.5e-06 24.2 0.0 3.5e-06 24.2 0.0 4.5 4 TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
3.8e-05 20.4 1.1 0.056 10.0 0.0 3.3 2 TIGR02902 spore_lonB: ATP-dependent protease LonB
4.5e-05 21.5 17.6 0.079 10.9 13.6 3.2 2 TIGR03499 FlhF: flagellar biosynthesis protein FlhF
0.00011 19.3 3.3 0.082 9.9 0.0 4.0 3 TIGR00635 ruvB: Holliday junction DNA helicase RuvB
0.00012 19.6 0.0 0.46 7.9 0.0 3.4 3 TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
0.00027 18.3 7.4 0.00073 16.8 0.0 3.8 4 TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and
0.00029 18.4 0.0 0.16 9.4 0.0 2.7 3 TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
0.0022 15.6 8.2 0.0053 14.3 8.2 1.6 1 TIGR04211 SH3_and_anchor: SH3 domain protein
0.0032 14.8 2.1 0.033 11.4 0.1 2.9 3 TIGR02858 spore_III_AA: stage III sporulation protein AA
0.0064 14.1 0.0 0.23 9.0 0.0 2.6 3 TIGR00678 holB: DNA polymerase III, delta' subunit
0.0068 13.6 1.0 1.2 6.3 0.0 3.5 4 TIGR02880 cbbX_cfxQ: CbbX protein
------ inclusion threshold ------
0.014 12.1 6.6 0.099 9.2 0.1 3.2 3 TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase
0.023 10.4 0.0 0.035 9.8 0.0 1.2 1 TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase fusion pr
1.9 6.5 8.4 2.5 6.1 4.4 2.8 2 TIGR02209 ftsL_broad: cell division protein FtsL
Domain annotation for each model (and alignments):
>> TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1077.9 18.5 0 0 151 852 .. 8 706 .. 2 707 .. 0.98
Alignments for each domain:
== domain 1 score: 1077.9 bits; conditional E-value: 0
TIGR03346 151 ekyealekyardlteraregkldPviGrdeeirrviqvlsrrtknnPvliGepGvGktaiveGlaqrivngdvPeslknkrllaldlgaliaGakyrG 248
+ +al+ky+rdlt+ a+++kldPviGr+eei rviq+lsr+tknnPvliGepGvGktaiveGlaqriv+gdvP lknkr+l ld+g+l+aGa y G
MMSYN1_0545 8 KVTDALKKYTRDLTKDAKDNKLDPVIGREEEISRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPTLLKNKRILELDMGSLMAGAMYMG 105
5679********************************************************************************************** PP
TIGR03346 249 efeerlkavlkevekseGeiilfidelhtlvGaGka..eGaldagnllkPalarGelhciGattldeyrkyiekdaalerrfqkvlvdePsvedtisi 344
++e r+kav++e++ks+Geiilfidelh +vGaGk+ + +d +nllkPalarGel++iG+ttl+eyr+yiekdaalerrfq+vlv+eP++++tisi
MMSYN1_0545 106 DYESRVKAVVNEIQKSNGEIILFIDELHLIVGAGKTgnNSGMDVSNLLKPALARGELKAIGSTTLNEYRQYIEKDAALERRFQRVLVSEPTIDQTISI 203
***********************************843568********************************************************* PP
TIGR03346 345 lrGlkeryevhhgvritdsalvaaatlshryitdrflPdkaidlideaaarlrmeidskPeeldeldrriiqlkierealkkekdeaskerlekleke 442
lrGlk+r+e++hgvri+d+alv+aa+ls+ryitdr lPdkaidl+dea+a++r+e+ s+P eld+++r+++ql+ie++al+kekd+ sker ++ +ke
MMSYN1_0545 204 LRGLKDRFETYHGVRIHDNALVSAAKLSSRYITDRYLPDKAIDLVDEACASIRTELASVPIELDQVNRKVMQLEIETSALEKEKDDKSKERWQEAKKE 301
************************************************************************************************** PP
TIGR03346 443 laeleeesaeleekwkaekekiekvkkikeelekvklelekakregdlakaaelkygklpelekeleeaeekekeekkekllkeevteeeiaevvsrw 540
l++l+ e+a+l+ekw++eke++++++++k+ +e++k+ele+a+++g++++a+e++y+ lp+lek+l+ e+++ + k++ eevte+eia+vvs+
MMSYN1_0545 302 LDSLKIEQASLNEKWEKEKEELSRINSVKSSIESLKQELETAQNDGNYKRAGEIQYSLLPSLEKSLALFEKQTGS----KMISEEVTEHEIAKVVSKS 395
********************************************************************9998877....79***************** PP
TIGR03346 541 tGiPvskllegerekllkleeelkervvGqdeaveavadavrrsraglsdPnrPigsflflGptGvGktelakalaeflfddeealvridmseymekh 638
tGi v++l+ +e+ekll+le+ lk+ v Gqd+a++av+ a+ rsr+g+++P++PigsflflGptGvGkte+a++la++lf++ ++++r+dmseymekh
MMSYN1_0545 396 TGILVDRLISSEKEKLLNLEDLLKKYVKGQDQAIKAVTSAIMRSRSGIKNPDKPIGSFLFLGPTGVGKTEVARSLADILFNSPKKMIRLDMSEYMEKH 493
************************************************************************************************** PP
TIGR03346 639 svarliGaPPGyvGyeeGGqlteavrrkpysvvlldevekahpdvfnvllqvlddGrltdgqGrtvdfkntviiltsnlgseaiqelaeeeeaeevke 736
sva+liGaPPGyvGyeeGG+lteavrr pys+vl+de+ekah+dvfn+llq+lddGrltd+ G+t+dfknt+i++tsn++s++++++ e ++ +
MMSYN1_0545 494 SVAKLIGAPPGYVGYEEGGRLTEAVRRNPYSIVLFDEIEKAHTDVFNILLQILDDGRLTDSLGKTIDFKNTIIVMTSNIASQYLLTSDEL--VQVDDQ 589
************************************************************************************986665..566778 PP
TIGR03346 737 avmealraefrPeflnrideivvfkalekeeikeiveiqlerlrkrlae.rklelelsdaaldllaeagydPvyGarPlkraiqkelenplakkllag 833
++ e+l++ frPeflnrid+iv f+al+ + i eiv+ le+l +rl++ +++ +++s++a++++ ++gyd +GarP+kr+i+k++e+ +a+ +++g
MMSYN1_0545 590 KIQEELNKVFRPEFLNRIDNIVYFNALSVQTIGEIVDKVLEELSTRLQDeQNYFINFSEEARNKIINEGYDRLFGARPIKRYIEKNIETLIAHYIISG 687
99*********************************************8626789******************************************** PP
TIGR03346 834 evkegdtiavdveddklvf 852
ev e+++ +dv+++++++
MMSYN1_0545 688 EVVENTRYLIDVKNNQFTL 706
***************9986 PP
>> TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 762.0 7.7 9.8e-232 2.1e-229 162 838 .. 5 687 .. 1 700 [. 0.93
Alignments for each domain:
== domain 1 score: 762.0 bits; conditional E-value: 9.8e-232
TIGR03345 162 kaaakesaLdkytvdltaqAregkiDpvlgRdeeirqliDiLlRRrqnnPiltGeaGvGktAvveglAlriaagdvPealrevellsLDlgllqAGAs 259
++ + ++aL+kyt dlt++A+++k+Dpv+gR+eei ++i iL R+ +nnP+l+Ge+GvGktA+veglA+ri++gdvP+ l++ ++l LD+g l AGA
MMSYN1_0545 5 EKGKVTDALKKYTRDLTKDAKDNKLDPVIGREEEISRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPTLLKNKRILELDMGSLMAGAM 102
5667799******************************************************************************************* PP
TIGR03345 260 vkGeFekRlksvidevkasekpiilFiDeaHtliGaG..gqaGqgDaanllkPaLARGelrtiaAttWaeykkyiekDaALtRRFqvvkveePdeeka 355
G++e+R+k+v++e+++s+ iilFiDe H ++GaG g++ + D++nllkPaLARGel+ i+ tt ey++yiekDaAL RRFq v v+eP+ +++
MMSYN1_0545 103 YMGDYESRVKAVVNEIQKSNGEIILFIDELHLIVGAGktGNNSGMDVSNLLKPALARGELKAIGSTTLNEYRQYIEKDAALERRFQRVLVSEPTIDQT 200
************************************955566778***************************************************** PP
TIGR03345 356 iemlRglakvlekhhgveildeavkaavelsaRYisgRqLPDkavsllDtAcarvalsqkatPaeledlekeiealeaelellereeelgaeeeerla 453
i++lRgl++++e+ hgv+i+d+a++ a++ls+RYi++R LPDka++l+D Aca ++ + ++ P el+++++++ +le e+++le+e++ +++er +
MMSYN1_0545 201 ISILRGLKDRFETYHGVRIHDNALVSAAKLSSRYITDRYLPDKAIDLVDEACASIRTELASVPIELDQVNRKVMQLEIETSALEKEKD--DKSKERWQ 296
************************************************************************************9985..88999*** PP
TIGR03345 454 eleeelaaleeelaalearwekekelveeikelreklee.........eeeeeaeeee...aleaelaelea..elaelqgeeplvsaevdeevvaev 537
e ++el++l+ e+a+l+++wekeke +++i+++++++e+ + + + ++ + + l +le+ +l e q+ ++++s+ev e+ +a+v
MMSYN1_0545 297 EAKKELDSLKIEQASLNEKWEKEKEELSRINSVKSSIESlkqeletaqN---DGNYKRageIQYSLLPSLEKslALFEKQTGSKMISEEVTEHEIAKV 391
**********************************999887777654321...2222223423333344455511566788899*************** PP
TIGR03345 538 vadWtGiPvgrlvkdeiekvleleekleervvGqdealeaiaerirtarAgledpkkPlgvFllvGpsGvGktetalalAellyGgeqnlitinmsef 635
v++ tGi v+rl ++e ek+l+le+ l++ v+Gqd+a++a++++i+ +r g+++p+kP+g Fl++Gp GvGkte a +lA+ l+ + +++i ++mse+
MMSYN1_0545 392 VSKSTGILVDRLISSEKEKLLNLEDLLKKYVKGQDQAIKAVTSAIMRSRSGIKNPDKPIGSFLFLGPTGVGKTEVARSLADILFNSPKKMIRLDMSEY 489
************************************************************************************************** PP
TIGR03345 636 qeaHtvstLkGsPPGYvGyGeGGvLteAvRrkPysvvLLDevekAhpdvlelFyqvFDkGvleDgeGreidfkntvilltsnvgsdliaelaadeeta 733
e+H+v++L+G+PPGYvGy eGG LteAvRr+Pys+vL De+ekAh dv ++ q+ D G l+D+ G++idfknt+i++tsn++s+ + + e +
MMSYN1_0545 490 MEKHSVAKLIGAPPGYVGYEEGGRLTEAVRRNPYSIVLFDEIEKAHTDVFNILLQILDDGRLTDSLGKTIDFKNTIIVMTSNIASQYLLTSD--ELVQ 585
**************************************************************************************987544..3332 PP
TIGR03345 734 peaealaealrpeLlkvfkpAllgRlevvpyl.plsdevlaeivelkleriakrlkenykaeleydealveeivarctevesGaRaidaileqtllpe 830
+ +++++eL+kvf+p +l R+ + y+ ls +++ eiv+ le +++rl+++++ ++++e++ ++i++ + GaR i++++e+++
MMSYN1_0545 586 VD----DQKIQEELNKVFRPEFLNRIDNIVYFnALSVQTIGEIVDKVLEELSTRLQDEQNYFINFSEEARNKIINEGYDRLFGARPIKRYIEKNIETL 679
23....3578999*************877766279*************************************************************** PP
TIGR03345 831 lseelLek 838
+++ +++
MMSYN1_0545 680 IAHYIISG 687
**999875 PP
>> TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 367.0 3.6 2e-112 4.3e-110 162 432 .. 7 276 .. 2 311 .. 0.89
2 ! 376.9 3.1 2e-115 4.2e-113 417 730 .. 380 695 .. 365 699 .. 0.92
Alignments for each domain:
== domain 1 score: 367.0 bits; conditional E-value: 2e-112
TIGR02639 162 kkekealekytvdltekakkgkidPliGredelertiqvLcrrkknnPllvGepGvGktaiveGLakriaedkvPealknakiysLdlgsllaGtkyr 259
k ++al+kyt dlt+ ak++k+dP+iGre+e+ r+iq+L+r++knnP+l+GepGvGktaiveGLa+ri++++vP+ lkn++i +Ld+gsl+aG+ y
MMSYN1_0545 7 GKVTDALKKYTRDLTKDAKDNKLDPVIGREEEISRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPTLLKNKRILELDMGSLMAGAMYM 104
46789********************************************************************************************* PP
TIGR02639 260 Gdfeerlkevveeiekeeda.ilfiDeihtivgagatsggs.ldasnlLkPalasGkirciGsttyeeykkifekdkaLsrrfqkidveePskeetvk 355
Gd+e r+k+vv+ei+k++ + ilfiDe+h ivgag t++ s +d+snlLkPala G+++ iGstt +ey++++ekd+aL rrfq++ v+eP++++t++
MMSYN1_0545 105 GDYESRVKAVVNEIQKSNGEiILFIDELHLIVGAGKTGNNSgMDVSNLLKPALARGELKAIGSTTLNEYRQYIEKDAALERRFQRVLVSEPTIDQTIS 202
****************9987689*************997544******************************************************** PP
TIGR02639 356 ilkglkekyeefhkvkysdealeaavelsakyindrfLPDkaiDviDeaGaalrlkekakkkakvsvkdieevvaki 432
il+glk+++e +h v+ +d+al +a++ls++yi+dr+LPDkaiD++Dea a++r + + + +++ ++++ v ++
MMSYN1_0545 203 ILRGLKDRFETYHGVRIHDNALVSAAKLSSRYITDRYLPDKAIDLVDEACASIRTELA---SVPIELDQVNRKVMQL 276
***************************************************9887766...3444455555544443 PP
== domain 2 score: 376.9 bits; conditional E-value: 2e-115
TIGR02639 417 kakvsvkdieevvakiakipeksvssddkekLknlekeLkkkifGqdeaiealvkaikrsraGlkeenkPvgsflfvGptGvGktelakqLaeel... 511
+++v++++i++vv+k + i ++ s++kekL nle+ Lkk + Gqd+ai+a+++ai rsr+G+k+++kP+gsflf GptGvGkte+a++La++l
MMSYN1_0545 380 SEEVTEHEIAKVVSKSTGILVDRLISSEKEKLLNLEDLLKKYVKGQDQAIKAVTSAIMRSRSGIKNPDKPIGSFLFLGPTGVGKTEVARSLADILfns 477
56799****************************************************************************************99433 PP
TIGR02639 512 gvellrfDmseymekhtvsrliGsPpGyvGfeeGGlLteavrknPyavlLlDeiekahpDilnilLqvmDyatLtDnsGrkadfrnvilimtsnaGak 609
+++r+Dmseymekh+v++liG+PpGyvG+eeGG Lteavr+nPy+++L+Deiekah+D++nilLq++D ++LtD+ G+ +df+n+i++mtsn+ ++
MMSYN1_0545 478 PKKMIRLDMSEYMEKHSVAKLIGAPPGYVGYEEGGRLTEAVRRNPYSIVLFDEIEKAHTDVFNILLQILDDGRLTDSLGKTIDFKNTIIVMTSNIASQ 575
368**********************************************************************************************9 PP
TIGR02639 610 easkakiGfaeekseeksekaikklfsPefrnrldaiikfedlseevlekivkkeleelekkLae.kkveleleddaikylaekgydeefGarelkrv 706
+ ++ +++ +k +++++k+f Pef nr+d+i+ f+ ls +++ iv+k leel+++L++ ++ ++++++a + ++++gyd+ fGar++kr
MMSYN1_0545 576 YLLTSD-ELVQVDD-QKIQEELNKVFRPEFLNRIDNIVYFNALSVQTIGEIVDKVLEELSTRLQDeQNYFINFSEEARNKIINEGYDRLFGARPIKRY 671
987644.3333333.3789********************************************86267889*************************** PP
TIGR02639 707 ieeeikkkladeiLfGklkkGgev 730
ie++i++ +a+ i+ G++ + ++
MMSYN1_0545 672 IEKNIETLIAHYIISGEVVENTRY 695
****************99877665 PP
>> TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.5 0.1 1.6e-10 3.4e-08 311 446 .. 50 191 .. 40 251 .. 0.84
2 ! 16.7 0.0 2.3e-06 0.00049 284 336 .. 422 474 .. 403 487 .. 0.84
Alignments for each domain:
== domain 1 score: 30.5 bits; conditional E-value: 1.6e-10
TIGR03922 311 rskHlllaGPPGtGkttiArvvak.iyaG..lgvlrkpevrEvsRadlig..eyigeseaktnel...idkaLgg.vlFlDEayaLvekrdgakddfG 399
+ + +l+G PG Gkt+i + +a+ i G ++l+++++ E l++ y+g+ e + +++ i+k+ g +lF+DE++ +v +++++ G
MMSYN1_0545 50 TKNNPVLIGEPGVGKTAIVEGLAQrIVKGdvPTLLKNKRILELDMGSLMAgaMYMGDYESRVKAVvneIQKSNGEiILFIDELHLIVGA-GKTGNNSG 146
566789****************972566744599***********999953379999998887772223456665268******99998.6789999* PP
TIGR03922 400 leaidtLLarlEndRdrlvviiAGYekdlDklLevneGLrsRFtrki 446
+ + + L +l R +l i+ ++ + +e + L +RF+r++
MMSYN1_0545 147 MDVSNLLKPAL--ARGELKAIGSTTLNEYRQYIEKDAALERRFQRVL 191
*9988776666..699***************************9987 PP
== domain 2 score: 16.7 bits; conditional E-value: 2.3e-06
TIGR03922 284 vkeqvaalkssvevalvRaerGlavaqrs.kHlllaGPPGtGkttiArvvakiy 336
vk q +a+k+ v a++R + G++ + + l++GP G Gkt +Ar +a i+
MMSYN1_0545 422 VKGQDQAIKA-VTSAIMRSRSGIKNPDKPiGSFLFLGPTGVGKTEVARSLADIL 474
6777777776.55689********998862679******************997 PP
>> TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.6 0.1 6.3e-06 0.0013 11 64 .. 26 75 .. 20 79 .. 0.84
2 ? 1.2 0.0 0.14 31 118 143 .. 112 138 .. 107 156 .. 0.86
3 ! 11.1 0.0 0.00014 0.03 4 66 .. 408 476 .. 406 488 .. 0.75
Alignments for each domain:
== domain 1 score: 15.6 bits; conditional E-value: 6.3e-06
TIGR02928 11 dyvpdrivhRdeqieelakalkpilrgsrpsnvliyGktGtGKtavtkkvlkel 64
d+ d + +R+e+i+++ ++l+ ++ +n ++ G++G+GKta+++ + +++
MMSYN1_0545 26 DNKLDPVIGREEEISRVIQILSR----KTKNNPVLIGEPGVGKTAIVEGLAQRI 75
56678899*******99987765....666788999***********9988876 PP
== domain 2 score: 1.2 bits; conditional E-value: 0.14
TIGR02928 118 eelvkeleeredsliivLDEiDklv.k 143
+ +v+e++++++ +i+ +DE+ +v
MMSYN1_0545 112 KAVVNEIQKSNGEIILFIDELHLIVgA 138
6899*****************999853 PP
== domain 3 score: 11.1 bits; conditional E-value: 0.00014
TIGR02928 4 nkklLeedyvpd.rivhRdeqieelakalkpilrgsr.ps....nvliyGktGtGKtavtkkvlkelee 66
++klL+ + + + + + d+ i+++++a+ +g + p+ + l G+tG+GKt v++ + + l +
MMSYN1_0545 408 KEKLLNLEDLLKkYVKGQDQAIKAVTSAIMRSRSGIKnPDkpigSFLFLGPTGVGKTEVARSLADILFN 476
677777666555488999999****999999888754143222257889************99887755 PP
>> TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.1 0.1 0.021 4.4 116 148 .. 50 85 .. 21 151 .. 0.70
2 ! 17.8 0.0 1.5e-06 0.00032 67 141 .. 409 474 .. 370 483 .. 0.76
3 ! 8.0 0.2 0.0014 0.3 302 382 .. 599 676 .. 556 694 .. 0.84
Alignments for each domain:
== domain 1 score: 4.1 bits; conditional E-value: 0.021
TIGR00382 116 eksnilliGptGsGktllaqtlakel...dvpfaia 148
k n +liG G Gkt + + la+++ dvp +
MMSYN1_0545 50 TKNNPVLIGEPGVGKTAIVEGLAQRIvkgDVPTLLK 85
58899******************9875556776554 PP
== domain 2 score: 17.8 bits; conditional E-value: 1.5e-06
TIGR00382 67 pkpkelkevldeyviGqeqakkvlsvavynhykrlrleknkksddgveleksnilliGptGsGktllaqtlakel 141
k +l + l +yv Gq+qa k+++ a+ ++ + d+ l++GptG Gkt +a++la +l
MMSYN1_0545 409 EKLLNLEDLLKKYVKGQDQAIKAVTSAIMRSRSGIK-----NPDK----PIGSFLFLGPTGVGKTEVARSLADIL 474
45567899*******************987766666.....3333....2356899****************986 PP
== domain 3 score: 8.0 bits; conditional E-value: 0.0014
TIGR00382 302 lipefiGrlpvlatlekldeealvailtkpknalvkqyqkllkldevelefeeealkaiakkalerktGarglrsiveell 382
+ pef+ r+ + +++ l+ +++ +i+ k + l + l + ++ ++f eea ++i+++ r Gar ++ +e+ +
MMSYN1_0545 599 FRPEFLNRIDNIVYFNALSVQTIGEIVDKVLEELSTR---LQDEQNYFINFSEEARNKIINEGYDRLFGARPIKRYIEKNI 676
56*************************9987777655...556788899************************99999765 PP
>> TIGR00764 lon_rel: putative ATP-dependent protease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.9 0.3 1.1e-06 0.00023 15 108 .. 27 124 .. 15 141 .. 0.70
2 ! 5.7 0.0 0.0049 1.1 16 63 .. 418 476 .. 403 492 .. 0.76
Alignments for each domain:
== domain 1 score: 17.9 bits; conditional E-value: 1.1e-06
TIGR00764 15 rlidqviGqdeavevikk..aakqkrnvlliGePGvGksmlakamaellpkeeledilvfpnpedenmpr..ikevpaGegrkiveeykkkakkqeev 108
+d viG++e + + + + k k n +liGePGvGk+ +++ +a+ + k ++ +l ++ + +m ++ G++ v++ ++ +k ++
MMSYN1_0545 27 NKLDPVIGREEEISRVIQilSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPTLLKNKRILELDMGSlmAGAMYMGDYESRVKAVVNEIQKSNGE 124
45899****9988655441245778899*****************99888888877777766666666552234556666666666666666655555 PP
== domain 2 score: 5.7 bits; conditional E-value: 0.0049
TIGR00764 16 lidqviGqdeavevikkaakqkrn...........vlliGePGvGksmlakamaellpk 63
l v Gqd+a++++ +a+ + r l++G GvGk+ +a+++a++l +
MMSYN1_0545 418 LKKYVKGQDQAIKAVTSAIMRSRSgiknpdkpigsFLFLGPTGVGKTEVARSLADILFN 476
556689************998885222233333335899****************9965 PP
>> TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.8 0.1 0.1 22 47 69 .. 51 73 .. 43 80 .. 0.82
2 ? 1.2 0.0 0.15 33 241 271 .. 117 150 .. 108 166 .. 0.81
3 ! 24.2 0.0 1.6e-08 3.5e-06 8 86 .. 416 492 .. 412 500 .. 0.73
4 ? -1.6 0.2 1.1 2.3e+02 368 412 .. 601 640 .. 530 679 .. 0.62
Alignments for each domain:
== domain 1 score: 1.8 bits; conditional E-value: 0.1
TIGR00390 47 PknilmiGstGvGkteiarrlak 69
n ++iG GvGkt i la+
MMSYN1_0545 51 KNNPVLIGEPGVGKTAIVEGLAQ 73
467899**********9877764 PP
== domain 2 score: 1.2 bits; conditional E-value: 0.15
TIGR00390 241 avdrveesGiifideidkia...kkgessgadvs 271
+++ + + i+fide+ i+ k g++sg dvs
MMSYN1_0545 117 EIQKSNGEIILFIDELHLIVgagKTGNNSGMDVS 150
4677777889*******99622245589999998 PP
== domain 3 score: 24.2 bits; conditional E-value: 1.6e-08
TIGR00390 8 aeldkyiiGqdeakkavaialrnryrrlqleeelkdevvP.knilmiGstGvGkteiarrlakl.aeaP..fikveatkftev 86
+ l ky+ Gqd+a kav+ a+ r+ +k+ P l +G+tGvGkte+ar la + + P +i+++ + + e
MMSYN1_0545 416 DLLKKYVKGQDQAIKAVTSAIMR--SRS----GIKNPDKPiGSFLFLGPTGVGKTEVARSLADIlFNSPkkMIRLDMSEYMEK 492
5689*************999753..233....3333333414689*****************862566655688888888775 PP
== domain 4 score: -1.6 bits; conditional E-value: 1.1
TIGR00390 368 deaikkiaelaynvnekteniGarrlhtvlerlledlsfeaedls 412
e +++i ++ y + + iG +++++le+ls +d +
MMSYN1_0545 601 PEFLNRIDNIVYFNALSVQTIG-----EIVDKVLEELSTRLQDEQ 640
3333333333333333333333.....344444444444444444 PP
>> TIGR02902 spore_lonB: ATP-dependent protease LonB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.0 0.0 0.00026 0.056 50 107 .. 15 72 .. 5 98 .. 0.82
2 ! 5.7 0.7 0.0051 1.1 67 203 .. 422 550 .. 367 656 .. 0.54
Alignments for each domain:
== domain 1 score: 10.0 bits; conditional E-value: 0.00026
TIGR02902 50 klteplseksrpksfdeiiGqeeGikalkaalcGpnpqhviiyGppGvGktaaarlvl 107
k t+ l++ ++ +++d +iG+ee i + l + ++ G pGvGkta
MMSYN1_0545 15 KYTRDLTKDAKDNKLDPVIGREEEISRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLA 72
468899999************************9999999************865444 PP
== domain 2 score: 5.7 bits; conditional E-value: 0.0051
TIGR02902 67 iiGqeeGikalkaalc....G.pnpqhvi....iyGppGvGktaaarlvleeakksaaspfkeeakfveidattarfderGiadpliGsvhdpiyqGa 155
+ Gq++ ika+ +a+ G np + i Gp GvGkt ar + f+ k++ +d + + e+ liG+ p y G
MMSYN1_0545 422 VKGQDQAIKAVTSAIMrsrsGiKNPDKPIgsflFLGPTGVGKTEVARSLAD-------ILFNSPKKMIRLDMS--EYMEKHSVAKLIGA--PPGYVGY 508
348899999888887522222347776443332679999999998885433.......234444445555543..23333333345554..3444443 PP
TIGR02902 156 GklGlaGipqpkaGavtkahGGvlfideiGelhpvqmnkllkvledrk 203
+ G + av + +++ dei + h n ll++l+d +
MMSYN1_0545 509 EEGGR------LTEAVRRNPYSIVLFDEIEKAHTDVFNILLQILDDGR 550
33332......2345555555566666666666666666666666655 PP
>> TIGR03499 FlhF: flagellar biosynthesis protein FlhF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.6 0.1 0.00091 0.19 155 223 .. 15 76 .. 3 80 .. 0.69
2 ! 10.9 13.6 0.00037 0.079 48 212 .. 280 464 .. 248 483 .. 0.57
Alignments for each domain:
== domain 1 score: 9.6 bits; conditional E-value: 0.00091
TIGR03499 155 elarelleklkekedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKTTTlAKLAarfv 223
+++r+l +++k+ ++ + + +e +++ + + +++ ++++ +L+G +GvGKT + LA+r v
MMSYN1_0545 15 KYTRDLTKDAKD--NKLDPVIGREEEISRVI--QILSRKTKNNP---VLIGEPGVGKTAIVEGLAQRIV 76
444555555554..55555556666777777..66666666666...9**********99999998876 PP
== domain 2 score: 10.9 bits; conditional E-value: 0.00037
TIGR03499 48 vaaideeesasaaseeeeakkaleeaepkkl..skaeekeekekeaeekaaeaaqeaekkleeae................eelrkelkalkellekq 127
+ a+++e++ +++++ +eakk+l++ + +++ ++++eke++e + ++ +++ ++ +++le+a+ +l+k l+ +++ ++
MMSYN1_0545 280 TSALEKEKDDKSKERWQEAKKELDSLKIEQAslNEKWEKEKEELSRINSVKSSIESLKQELETAQndgnykrageiqysllPSLEKSLALFEKQTGSK 377
34455555455555555555555554444440034444443333333334444444444444444788888899888777766666666666666666 PP
TIGR03499 128 lselal..eeedperakllkklleagvseelarel..leklke.kedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKT 212
+ + ++ +e ++ +k + l+++ +s e + l + lk+ + +++a +++ +a+ ++ +++ + g ++++GptGvGKT
MMSYN1_0545 378 MISEEVteHEIAKVVSKSTGILVDRLISSEKEKLLnlEDLLKKyVKGQDQAIKAVTSAIMRSR--SGIKNPDK-PIGSFLFLGPTGVGKT 464
665555776677777777777777777665544331033344464466666666666666665..33333333.34589**********9 PP
>> TIGR00635 ruvB: Holliday junction DNA helicase RuvB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.7 0.6 0.0071 1.5 31 54 .. 52 75 .. 27 149 .. 0.63
2 ! 9.9 0.0 0.00038 0.082 8 54 .. 424 474 .. 416 496 .. 0.69
3 ? -0.3 0.0 0.47 1e+02 83 118 .. 524 559 .. 514 571 .. 0.84
Alignments for each domain:
== domain 1 score: 5.7 bits; conditional E-value: 0.0071
TIGR00635 31 dhvllyGPPGlGkttlakiiakel 54
+ +l+G PG+Gkt++ + +a+ +
MMSYN1_0545 52 NNPVLIGEPGVGKTAIVEGLAQRI 75
334689********9887766654 PP
== domain 2 score: 9.9 bits; conditional E-value: 0.00038
TIGR00635 8 Gqekvkeklqlfikaa....kkrkealdhvllyGPPGlGkttlakiiakel 54
Gq++ ++ ++ +i + k+ ++ + l+ GP G+Gkt +a+ +a l
MMSYN1_0545 424 GQDQAIKAVTSAIMRSrsgiKNPDKPIGSFLFLGPTGVGKTEVARSLADIL 474
666666666666655411114556677889***********9998887654 PP
== domain 3 score: -0.3 bits; conditional E-value: 0.47
TIGR00635 83 dvlfiDeihrlskaveellypamedfkldivigkgp 118
+++ Dei + + v ++l ++++d +l +gk
MMSYN1_0545 524 SIVLFDEIEKAHTDVFNILLQILDDGRLTDSLGKTI 559
68888********************99988888865 PP
>> TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.0 0.0 0.56 1.2e+02 23 45 .. 54 75 .. 35 122 .. 0.74
2 ! 7.9 0.0 0.0022 0.46 25 44 .. 454 473 .. 425 500 .. 0.83
3 ! 6.9 0.0 0.0044 0.93 97 134 .. 512 551 .. 508 565 .. 0.85
Alignments for each domain:
== domain 1 score: -0.0 bits; conditional E-value: 0.56
TIGR02640 23 pvhlrGPaGtGktslalhvakkr 45
pv l+G G Gkt++ +a++
MMSYN1_0545 54 PV-LIGEPGVGKTAIVEGLAQRI 75
44.89999*******99999864 PP
== domain 2 score: 7.9 bits; conditional E-value: 0.0022
TIGR02640 25 hlrGPaGtGktslalhvakk 44
+ GP+G Gkt +a+ +a
MMSYN1_0545 454 LFLGPTGVGKTEVARSLADI 473
589**************975 PP
== domain 3 score: 6.9 bits; conditional E-value: 0.0044
TIGR02640 97 nrltlavr.eGftlv.ydefsrskPeannvllsvleekvl 134
+rlt+avr + + +v +de ++++ + n+ll +l+++ l
MMSYN1_0545 512 GRLTEAVRrNPYSIVlFDEIEKAHTDVFNILLQILDDGRL 551
69****97356776549******************99866 PP
>> TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.7 0.0 0.067 14 11 58 .. 27 73 .. 18 78 .. 0.72
2 ? -1.2 1.2 1 2.2e+02 274 339 .. 264 325 .. 217 345 .. 0.49
3 ! 16.8 0.0 3.4e-06 0.00073 16 60 .. 422 474 .. 418 486 .. 0.75
4 ? -2.0 0.1 1.8 3.8e+02 118 143 .. 523 548 .. 517 606 .. 0.71
Alignments for each domain:
== domain 1 score: 2.7 bits; conditional E-value: 0.067
TIGR02397 11 ktFedliGqehvvktLknaikknkiahayLfsGprGvGKTsiArilAk 58
++++ +iG+e ++ + +i ++k ++ ++ G GvGKT+i lA+
MMSYN1_0545 27 NKLDPVIGREEEISRVI-QILSRKTKNNPVLIGEPGVGKTAIVEGLAQ 73
56677777765444443.3667788888899*********99776665 PP
== domain 2 score: -1.2 bits; conditional E-value: 1
TIGR02397 274 vdleklledliellrdlllvkktkselleveeeeeeslkekaeklsleklle..llkilleaekelkv 339
++l+++ +++++l ++ +++k k ++++e+++e +++l++ k+++ l + ++++++el+
MMSYN1_0545 264 IELDQVNRKVMQLEIETSALEKEK------DDKSKERWQEAKKELDSLKIEQasLNEKWEKEKEELSR 325
333333333333333333333332......22222223333333332222220022333333333333 PP
== domain 3 score: 16.8 bits; conditional E-value: 3.4e-06
TIGR02397 16 liGqehvvktLknaikknkia........hayLfsGprGvGKTsiArilAkal 60
+ Gq++ +k+++ ai +++ ++Lf Gp GvGKT +Ar lA l
MMSYN1_0545 422 VKGQDQAIKAVTSAIMRSRSGiknpdkpiGSFLFLGPTGVGKTEVARSLADIL 474
6788888888888887776432122222259******************9876 PP
== domain 4 score: -2.0 bits; conditional E-value: 1.8
TIGR02397 118 ykvYiiDEvhmLsksafnaLLKtlEe 143
y + + DE+ ++ fn LL +l +
MMSYN1_0545 523 YSIVLFDEIEKAHTDVFNILLQILDD 548
66666677777777777777766654 PP
>> TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.4 0.0 0.00074 0.16 23 66 .. 36 79 .. 24 104 .. 0.79
2 ! 5.9 0.0 0.0089 1.9 32 79 .. 435 491 .. 412 501 .. 0.70
3 ? -3.4 0.0 6.4 1.4e+03 137 154 .. 625 642 .. 568 654 .. 0.64
Alignments for each domain:
== domain 1 score: 9.4 bits; conditional E-value: 0.00074
TIGR03420 23 aellaalrelaeakaerllylwGesgsGksHLLqAacaaaeeag 66
+e ++++ +++++k+++ l+Ge+g+Gk+ +++++++++ + +
MMSYN1_0545 36 EEEISRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGD 79
456777888889999**********************9987554 PP
== domain 2 score: 5.9 bits; conditional E-value: 0.0089
TIGR03420 32 l.........aeakaerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaq 79
+ + +k ++ + G++g+Gk+ +++++ + + k++i l+++e +
MMSYN1_0545 435 AimrsrsgikNPDKPIGSFLFLGPTGVGKTEVARSLADILFNSPKKMIRLDMSEYME 491
4444454433333444578999****************************9999765 PP
== domain 3 score: -3.4 bits; conditional E-value: 6.4
TIGR03420 137 lklrlpDLrtRlawglvf 154
++ l++L tRl+ +
MMSYN1_0545 625 VDKVLEELSTRLQDEQNY 642
444567777777765555 PP
>> TIGR04211 SH3_and_anchor: SH3 domain protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.3 8.2 2.5e-05 0.0053 65 161 .. 256 346 .. 234 351 .. 0.62
Alignments for each domain:
== domain 1 score: 14.3 bits; conditional E-value: 2.5e-05
TIGR04211 65 rerleelqkelaelqeelaelkeelaelkqelkelkeelekleeekeklekelekikklsenaleleeeneelkeeleelkqenealeaenerlkes 161
r++l+++ el++++ ++ +l+ e++ l++e++ +k++e+ ++++kel+++k ++++++e e+ +e ++++++k+ +e+l++e+e+++++
MMSYN1_0545 256 RTELASVPIELDQVNRKVMQLEIETSALEKEKD------DKSKERWQEAKKELDSLKIEQASLNEKWEKEKEELSRINSVKSSIESLKQELETAQND 346
444445555555555555555555555555555......4666666777777777777777766666555555666777777777777777777665 PP
>> TIGR02858 spore_III_AA: stage III sporulation protein AA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.4 0.1 0.00015 0.033 103 165 .. 42 103 .. 32 149 .. 0.77
2 ? 0.7 0.0 0.28 61 115 143 .. 452 480 .. 426 494 .. 0.82
3 ? -0.8 0.1 0.83 1.8e+02 201 269 .. 551 624 .. 528 627 .. 0.77
Alignments for each domain:
== domain 1 score: 11.4 bits; conditional E-value: 0.00015
TIGR02858 103 lleylvknnrvlntliisPPqsGkttllrdlaralstGisklglkglkvgivderseiaacvk 165
+++ l ++ +n ++i+ P Gkt+++ la+ + +G + lk +++ +d s +a+++
MMSYN1_0545 42 VIQILS-RKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPTLLKNKRILELDMGSLMAGAMY 103
444444.55668999***********************999999*****99999999998753 PP
== domain 2 score: 0.7 bits; conditional E-value: 0.28
TIGR02858 115 ntliisPPqsGkttllrdlaralstGisk 143
+ l ++P Gkt + r la +l + +k
MMSYN1_0545 452 SFLFLGPTGVGKTEVARSLADILFNSPKK 480
67899***************999886444 PP
== domain 3 score: -0.8 bits; conditional E-value: 0.83
TIGR02858 201 vvdeiGreedveallealnaGvs...viatahgkdledlkkrpvlkelleekvferv..vvlskrkgiGtvekv 269
++d +G++ d + + ++ + ++ ++++ +++d k ++ l+++++ + ++r+ +v ++ + t+ ++
MMSYN1_0545 551 LTDSLGKTIDFKNTIIVMTSNIAsqyLLTSDELVQVDDQKIQEELNKVFRPEFLNRIdnIVYFNALSVQTIGEI 624
57999999999988777777664344888889999999999999999999999998533555566666666555 PP
>> TIGR00678 holB: DNA polymerase III, delta' subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.7 0.0 0.19 40 12 39 .. 49 76 .. 41 83 .. 0.81
2 ! 9.0 0.0 0.0011 0.23 16 42 .. 452 478 .. 441 493 .. 0.87
3 ? -3.1 0.0 5.7 1.2e+03 93 120 .. 519 546 .. 513 547 .. 0.83
Alignments for each domain:
== domain 1 score: 1.7 bits; conditional E-value: 0.19
TIGR00678 12 rlahAlLfaGpeGvGkealaealakall 39
+ ++ + G++GvGk+a++e la++++
MMSYN1_0545 49 KTKNNPVLIGEPGVGKTAIVEGLAQRIV 76
455555678***************9876 PP
== domain 2 score: 9.0 bits; conditional E-value: 0.0011
TIGR00678 16 AlLfaGpeGvGkealaealakallCek 42
++Lf Gp GvGk+++a+ la l+ ++
MMSYN1_0545 452 SFLFLGPTGVGKTEVARSLADILFNSP 478
68******************9999874 PP
== domain 3 score: -3.1 bits; conditional E-value: 5.7
TIGR00678 93 lesgrrvviiedaealneaaaNaLLKtL 120
++++ +v++++ e+ ++ N LL +L
MMSYN1_0545 519 RRNPYSIVLFDEIEKAHTDVFNILLQIL 546
5788999999999999999999999877 PP
>> TIGR02880 cbbX_cfxQ: CbbX protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.5 0.1 0.079 17 62 130 .. 55 132 .. 4 144 .. 0.70
2 ? -2.6 0.0 2.9 6.3e+02 153 175 .. 192 214 .. 155 222 .. 0.67
3 ! 6.3 0.0 0.0055 1.2 47 84 .. 438 476 .. 405 482 .. 0.79
4 ? 0.5 0.0 0.32 68 179 221 .. 600 642 .. 580 674 .. 0.85
Alignments for each domain:
== domain 1 score: 2.5 bits; conditional E-value: 0.079
TIGR02880 62 sftgnpgtgkttvalrmakilhrl...gyvrkghlvsvtrddlvg..qyightapktkevl...kramgg.vlfidea 130
+ g+pg gkt++ +a+ + + +++ +++ l+ y+g + k v+ +++ g +lfide
MMSYN1_0545 55 VLIGEPGVGKTAIVEGLAQRIVKGdvpTLLKNKRILELDMGSLMAgaMYMGDYESRVKAVVneiQKSNGEiILFIDEL 132
4679********999999876653112456667777777777753225777777777765411134444426888886 PP
== domain 2 score: -2.6 bits; conditional E-value: 2.9
TIGR02880 153 vmenqrddlvvilagykdrmdsf 175
v e d+ + il g kdr++++
MMSYN1_0545 192 VSEPTIDQTISILRGLKDRFETY 214
45666677777888888887766 PP
== domain 3 score: 6.3 bits; conditional E-value: 0.0055
TIGR02880 47 rqklglas.aapslhmsftgnpgtgkttvalrmakilhr 84
r + g+ + ++p + f g g gkt va +a+il++
MMSYN1_0545 438 RSRSGIKNpDKPIGSFLFLGPTGVGKTEVARSLADILFN 476
555555442456667889*******************96 PP
== domain 4 score: 0.5 bits; conditional E-value: 0.32
TIGR02880 179 npglssrvahhvdfpdyseeellaiaellleeqqyrlsaeaee 221
p + r+ + v f s + + +i + +lee + rl++e +
MMSYN1_0545 600 RPEFLNRIDNIVYFNALSVQTIGEIVDKVLEELSTRLQDEQNY 642
4788899999999999999999999999999999999998754 PP
>> TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.2 0.1 0.00046 0.099 280 348 .. 11 79 .. 3 87 .. 0.81
2 ? -1.3 1.9 0.74 1.6e+02 202 296 .. 251 350 .. 242 381 .. 0.64
3 ? 4.2 0.0 0.015 3.2 321 349 .. 451 479 .. 381 493 .. 0.81
Alignments for each domain:
== domain 1 score: 9.2 bits; conditional E-value: 0.00046
TIGR04291 280 eaLrqllkeekaaesesaateekedlpslsklidelakkekglillmGkGGvGkttvaaaiavkLaekg 348
+aL++ ++ ++ +++++ +++s++i+ l++k k+ +l+G GvGkt++ +a+++++ +
MMSYN1_0545 11 DALKKYTRDLTKDAKDNKLDPVIGREEEISRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGD 79
5666666666666666666777778899**********************************9998765 PP
== domain 2 score: -1.3 bits; conditional E-value: 0.74
TIGR04291 202 pqkstllevaraaeeLaaiglknqllvingvleeeaeedalasallkreqkalqelp...eilkel.preelplkpvn..lvGleaLrqllkeekaae 293
+ s +e+a eL ++ k +l i e+e+d+ +++ +++ +k+l++l + l+e+ ++e+ l +n +e+L+q l+ +++
MMSYN1_0545 251 ACASIRTELASVPIELDQVNRKVMQLEIETSAL-EKEKDDKSKERWQEAKKELDSLKieqASLNEKwEKEKEELSRINsvKSSIESLKQELETAQNDG 347
555666788888889999999999999987664.6777778888888888888877522256665422333444444411457888888887766655 PP
TIGR04291 294 ses 296
+ +
MMSYN1_0545 348 NYK 350
444 PP
== domain 3 score: 4.2 bits; conditional E-value: 0.015
TIGR04291 321 glillmGkGGvGkttvaaaiavkLaekgl 349
g +l +G GvGkt va ++a L + +
MMSYN1_0545 451 GSFLFLGPTGVGKTEVARSLADILFNSPK 479
56788999999999999999988877654 PP
>> TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase fusion protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.8 0.0 0.00017 0.035 468 531 .. 17 78 .. 5 92 .. 0.75
Alignments for each domain:
== domain 1 score: 9.8 bits; conditional E-value: 0.00017
TIGR03903 468 artplesldagdatPlvGRareleaLrrrWrdtvagrgravLvvGeaGiGksrLvhelvek.vrg 531
r ++ + ++ P++GR++e++ + + + +++ ++ Ge+G+Gk +v+ l ++ v+g
MMSYN1_0545 17 TRDLTKDAKDNKLDPVIGREEEISRVIQILS---RKTKNNPVLIGEPGVGKTAIVEGLAQRiVKG 78
55556666788999********987776544...5556666778*************98752555 PP
>> TIGR02209 ftsL_broad: cell division protein FtsL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.1 4.4 0.012 2.5 23 75 .. 256 307 .. 252 311 .. 0.77
2 ? 1.1 1.9 0.41 88 37 58 .. 292 313 .. 288 331 .. 0.74
Alignments for each domain:
== domain 1 score: 6.1 bits; conditional E-value: 0.012
TIGR02209 23 qhqtrqlnselqklqaeieklqkewndLqlEvaelsrheRiekiAkkqL.gmkl 75
++++ + +el+++++++ +l++e++ L+ E+ + s+ eR ++ Akk+L +k+
MMSYN1_0545 256 RTELASVPIELDQVNRKVMQLEIETSALEKEKDDKSK-ER-WQEAKKELdSLKI 307
566677889**********************988765.45.5557777755555 PP
== domain 2 score: 1.1 bits; conditional E-value: 0.41
TIGR02209 37 qaeieklqkewndLqlEvaels 58
++ ++++ke ++L+ E+a+l
MMSYN1_0545 292 KERWQEAKKELDSLKIEQASLN 313
5556777888888888888775 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (713 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 423 (0.0942513); expected 89.8 (0.02)
Passed bias filter: 157 (0.0349822); expected 89.8 (0.02)
Passed Vit filter: 42 (0.00935829); expected 4.5 (0.001)
Passed Fwd filter: 21 (0.00467914); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 21 [number of targets reported over threshold]
# CPU time: 0.41u 0.31s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 2225.87
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0545 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0599 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0599.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0599/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0599 [L=46]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (46 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 152 (0.0338681); expected 89.8 (0.02)
Passed bias filter: 99 (0.0220588); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 330.29
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0599 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0600 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0600.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0600/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0600 [L=610]
Description: rnjA 4=Probable RNA metabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.3e-177 586.6 11.3 1.1e-176 586.4 11.3 1.0 1 TIGR00649 MG423: beta-CASP ribonuclease, RNase J family
4.6e-12 42.9 0.3 2.7e-10 37.0 0.2 2.6 2 TIGR03675 arCOG00543: arCOG00543 universal archaeal KH-domai
1.6e-09 35.2 0.1 5.7e-09 33.4 0.1 1.8 1 TIGR02651 RNase_Z: ribonuclease Z
2.3e-08 31.7 0.0 1.4e-07 29.1 0.0 2.1 2 TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase
1.2e-06 24.9 0.0 2.4e-06 23.9 0.0 1.5 1 TIGR00361 ComEC_Rec2: DNA internalization-related competence
------ inclusion threshold ------
0.02 11.7 0.1 0.077 9.7 0.1 1.9 1 TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-a
Domain annotation for each model (and alignments):
>> TIGR00649 MG423: beta-CASP ribonuclease, RNase J family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 586.4 11.3 1.4e-179 1.1e-176 2 545 .. 61 605 .. 60 606 .. 0.99
Alignments for each domain:
== domain 1 score: 586.4 bits; conditional E-value: 1.4e-179
TIGR00649 2 kilalGGleEvGkNmtvvevddevvildvGiklpedellgvdvviPdfsylkenedkvkgivlthghedhiGaveyllkkleippiygtkltialiks 99
ki+alGGleEvGkN++ +e+d+e +++d+G+k+pe +lgv viPd+syl en++k+k++++thghedhiG+++yl+++++ip+iy++kl++ li++
MMSYN1_0600 61 KIFALGGLEEVGKNTYCIEYDNELIMIDAGVKFPESTMLGVSAVIPDYSYLAENQKKIKALFITHGHEDHIGGIQYLVQQVKIPVIYAPKLAAMLIRD 158
8************************************************************************************************* PP
TIGR00649 100 klkekklnvktdlkeinekeivelseniaiefirvthSipdSvglalhTpeGsivyagDFkfdntpviaeeadlkklaelgkkgvllLlsdstnveke 197
+lke+k++ kt +ke +++++ ++ +n+++++ hSipd +g+ ++Tp+G+i ++gD+kfd p + a+l+kla +g++gv lL++dstn+e e
MMSYN1_0600 159 RLKEYKIEDKTIVKEYDADDVWKT-KNFKVSYAALNHSIPDAFGILVQTPNGNIFSTGDYKFDWSPLG-HFAELTKLASMGENGVELLMADSTNSEVE 254
***********************9.99************************************99975.999************************** PP
TIGR00649 198 gkTpseakvseeledilkeakgrvivatfaSniarvqqiieiAekqgRkvvvlgrsleklleiarklgliklpealfislkevnkspkeevliittgs 295
g+T+ e++++ ++++++ +akgr++++tfaSn++r+q+iie A+k++Rk+v+lgrs+e++++i+r++g +k+ e+ fi+ ++ k+ ee +i+ttgs
MMSYN1_0600 255 GYTQGEKSIISNIDKLFLQAKGRIFLTTFASNVHRIQHIIETAHKYNRKIVILGRSFERIIKIIRQIGHLKISEKEFIKSTDIDKYKPEELMILTTGS 352
************************************************************************************************** PP
TIGR00649 296 qgeplaaLtrianneheqikirkgDtvvfsakpipgneeiavsklldvrlaeagarvikr.....ihvSghasqEdhklllrllkPkyiiPvhGeyrm 388
qgep+aaL+riann+h i+i +gDtvvfs++pipgn + v+kl++ +l+++ga vi++ ih+SghasqE++kll +l++Pky++P+hGeyrm
MMSYN1_0600 353 QGEPMAALSRIANNKHLSINIIPGDTVVFSSSPIPGNR-ADVEKLVN-KLTRVGAIVIENtsdnkIHTSGHASQEEQKLLFSLIRPKYFMPMHGEYRM 448
**************************************.********.***********99************************************* PP
TIGR00649 389 lakytklaeeeGvkeedifilenGevlelegkkikvakkvlsgnklvDsaglqeigasilreReqlsedGvvivvialdkkksellaepelsslGvvl 486
l+k++++ e+ +++ + fi+ nG+vlel + k k+ k+v ++vD++ ++ + ++reRe+ls+dG++ vvi+ld++ ++l+++p ++s+G +
MMSYN1_0600 449 LKKHVETGESVNLEKGNGFIMANGDVLELLQGKAKIGKRVEADAVYVDGKDMTGKASNVIREREILSKDGLIAVVISLDSQTNKLISQPRIISRGSFY 546
************************************************************************************************** PP
TIGR00649 487 vkeekelikekqelikkqiseikeisneeskelkkeikdalaklltkktkkaPlilsii 545
vk+ + i + +++i++ ++e+ s+ + ++kk+ik++l +++ +++Pli+++i
MMSYN1_0600 547 VKDAGSIISDSIQIITNAVNEVLMSSKPTFAAIKKAIKSSLSPYIFRVKRRNPLIIPVI 605
********************************************************998 PP
>> TIGR03675 arCOG00543: arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.0 0.2 3.7e-13 2.7e-10 163 294 .. 48 181 .. 40 308 .. 0.75
2 ? -1.8 0.0 0.21 1.5e+02 356 392 .. 394 430 .. 377 436 .. 0.80
Alignments for each domain:
== domain 1 score: 37.0 bits; conditional E-value: 3.7e-13
TIGR03675 163 rihrevivkeewvrvtalGgfrevGRsalllstkeskvllDcGvnvaa....eeeealPyldvpevkleelDavvithahlDhvglvPllfkygyegP 256
+++r+ ++ ++ alGg +evG+ ++ ++ ++ +++D+Gv+ + + +P ++ + +++ a+ ith h Dh+g + +l + + P
MMSYN1_0600 48 EVKRQYQKTNIPTKIFALGGLEEVGKNTYCIEYDNELIMIDAGVKFPEstmlGVSAVIPDYSYLAENQKKIKALFITHGHEDHIGGIQYLVQQ-VKIP 144
56777777788899******************************9876333334566787766666899*********************985.6778 PP
TIGR03675 257 vYlteptrdlmvllllDylevaekegkkl..pyeskdvke 294
v + +l+++l++D l+ + e+k++ y+++dv +
MMSYN1_0600 145 VIYAP---KLAAMLIRDRLKEYKIEDKTIvkEYDADDVWK 181
76654...69999999*99998888887622466666654 PP
== domain 2 score: -1.8 bits; conditional E-value: 0.21
TIGR03675 356 dkaenkfprvetliiestYggkddvqksreeaekeli 392
+k +nk +rv +++ie t +k ++ + +++e++l+
MMSYN1_0600 394 EKLVNKLTRVGAIVIENTSDNKIHTSGHASQEEQKLL 430
6778999***********9998877777777777764 PP
>> TIGR02651 RNase_Z: ribonuclease Z
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.4 0.1 7.6e-12 5.7e-09 48 149 .. 114 206 .. 73 215 .. 0.77
Alignments for each domain:
== domain 1 score: 33.4 bits; conditional E-value: 7.6e-12
TIGR02651 48 sfkkidkIfitHlHgDHilGLpGLlstlslqerkepLtiygPkgikefiekllevsktklnyeikvkeieekkeevleeekfkvealeldHsve.slg 144
+ kki+ +fitH H+DHi G+ L++++++ iy+Pk + +i++ ++ ++k++ + vke +++ +v ++++fkv+++ l+Hs++ ++g
MMSYN1_0600 114 NQKKIKALFITHGHEDHIGGIQYLVQQVKIPV------IYAPKLAAMLIRD--RLKEYKIEDKTIVKEYDAD--DVWKTKNFKVSYAALNHSIPdAFG 201
4689*********************9998765......99**999999999..5555666666666666655..4799**************974677 PP
TIGR02651 145 Yrlee 149
+++
MMSYN1_0600 202 ILVQT 206
66665 PP
>> TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.1 0.0 1.8e-10 1.4e-07 34 76 .. 108 151 .. 81 182 .. 0.83
2 ? -1.0 0.0 0.28 2.1e+02 114 151 .. 256 293 .. 234 300 .. 0.77
Alignments for each domain:
== domain 1 score: 29.1 bits; conditional E-value: 1.8e-10
TIGR03413 34 lealeekglkleaillTHhHaDHvggvaellekfpvkv.vgpae 76
++l+e++ k++a+++TH H+DH+gg++ l+++++++v ++p+
MMSYN1_0600 108 YSYLAENQKKIKALFITHGHEDHIGGIQYLVQQVKIPViYAPKL 151
57899******************************776155554 PP
== domain 2 score: -1.0 bits; conditional E-value: 0.28
TIGR03413 114 yyleeekvlFcgDtLfsaGCGrlfegtaeqmleslqkl 151
y++ e++++ D Lf Gr+f t + ++ +q++
MMSYN1_0600 256 YTQGEKSIISNIDKLFLQAKGRIFLTTFASNVHRIQHI 293
5555566777789999999*****99999888877766 PP
>> TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.9 0.0 3.2e-09 2.4e-06 460 549 .. 82 187 .. 70 216 .. 0.84
Alignments for each domain:
== domain 1 score: 23.9 bits; conditional E-value: 3.2e-09
TIGR00361 460 gkgiLyDtGeaWreg.slgekviiP...yLqakgiklealiLshedqDhaGgaeiiLkaypvvrlviPkrkv............eeeeareevkrGea 541
+ i++D G ++e lg +iP yL + k+ al ++h ++Dh+Gg++ ++++ ++ + +Pk e++ +e + ++
MMSYN1_0600 82 NELIMIDAGVKFPEStMLGVSAVIPdysYLAENQKKIKALFITHGHEDHIGGIQYLVQQVKIPVIYAPKLAAmlirdrlkeykiEDKTIVKEYDADDV 179
4559**********9567999***999899999999********************************877789999999977666666777777888 PP
TIGR00361 542 lqwqgLrF 549
++ ++ +
MMSYN1_0600 180 WKTKNFKV 187
88877654 PP
>> TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.7 0.1 0.0001 0.077 22 117 .. 116 225 .. 108 359 .. 0.69
Alignments for each domain:
== domain 1 score: 9.7 bits; conditional E-value: 0.0001
TIGR04122 22 rpverAlitHgHsDHa........raGhkkylateetlailrlRlGed.....ieletveygeeveingvkvslhpaGHvlGsa.qvrleykgevivv 105
++++ itHgH DH ++ ++a + ++ ++r Rl e + +++ + ++ ++++ kvs+ + H + a + +++ + i
MMSYN1_0600 116 KKIKALFITHGHEDHIggiqylvqQVKIPVIYAPKLAAMLIRDRLKEYkiedkTIVKEYDADDVWKTKNFKVSYAALNHSIPDAfGILVQTPNGNIFS 213
4566678********62221111111122234556667778899987443333445566677888999999***999997766537999999999999 PP
TIGR04122 106 sGDykreadptc 117
+GDyk + p+
MMSYN1_0600 214 TGDYKFDWSPLG 225
****98877665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (610 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 233 (0.0519162); expected 89.8 (0.02)
Passed bias filter: 125 (0.027852); expected 89.8 (0.02)
Passed Vit filter: 17 (0.00378788); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.24
# Mc/sec: 3649.94
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0600 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0601 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0601.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0601/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0601 [L=314]
Description: membrane protein, putative 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.1 10.5 3.9 0.065 11.1 0.2 2.4 2 TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
Domain annotation for each model (and alignments):
>> TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.1 0.2 1.4e-05 0.065 117 145 .. 162 190 .. 155 199 .. 0.90
2 ? -1.1 0.2 0.079 3.6e+02 127 150 .. 226 249 .. 221 250 .. 0.84
Alignments for each domain:
== domain 1 score: 11.1 bits; conditional E-value: 1.4e-05
TIGR03927 117 eetektssilllvliaglillliagiyfl 145
++t+++++ill+ +i+ +ll ++ ++f+
MMSYN1_0601 162 DQTKEWYWILLGFIIGNGVLLVVGLLAFI 190
89**************9999999999887 PP
== domain 2 score: -1.1 bits; conditional E-value: 0.079
TIGR03927 127 llvliaglillliagiyflirkvk 150
l++l++ il li+ i + +r+v
MMSYN1_0601 226 LILLMIYSILRLIGNILNTARRVL 249
677888899999999999999986 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (314 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 344 (0.0766488); expected 89.8 (0.02)
Passed bias filter: 79 (0.0176025); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 2147.23
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0601 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0606 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0606.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0606/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0606 [L=404]
Description: pgk 4=Probable Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.018 13.1 0.3 0.044 11.8 0.3 1.7 1 TIGR03504 FimV_Cterm: FimV C-terminal domain
Domain annotation for each model (and alignments):
>> TIGR03504 FimV_Cterm: FimV C-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.8 0.3 9.9e-06 0.044 2 14 .. 255 267 .. 254 269 .. 0.86
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 9.9e-06
TIGR03504 2 KLDLAkaYiemGD 14
K+DLAk Y+e+G+
MMSYN1_0606 255 KIDLAKHYLEIGK 267
9***********5 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (404 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 310 (0.0690731); expected 89.8 (0.02)
Passed bias filter: 199 (0.0443405); expected 89.8 (0.02)
Passed Vit filter: 18 (0.0040107); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 2320.65
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0606 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0607 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0607.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0607/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0607 [L=338]
Description: GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 5=Equivalog Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-126 419.1 1.8 3.3e-126 418.9 1.8 1.0 1 TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase,
6.4e-88 293.1 1.0 7.2e-88 292.9 1.0 1.0 1 TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
5.4e-05 20.4 0.5 0.024 11.7 0.2 2.5 3 TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase
0.0052 13.8 0.2 0.088 9.8 0.2 2.2 1 TIGR00978 asd_EA: aspartate-semialdehyde dehydrogenase
Domain annotation for each model (and alignments):
>> TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 418.9 1.8 2.9e-129 3.3e-126 1 330 [] 4 330 .. 4 330 .. 0.96
Alignments for each domain:
== domain 1 score: 418.9 bits; conditional E-value: 2.9e-129
TIGR01534 1 kvginGfGRiGrlvlrallekkskdlevvaindltdleklayllkyDsvhG.rfeeevtvsekkallvngkkvivlaserdpkdlpwkelgvdlvlec 97
kv+inGfGRiGrl++r+l ek d+e+vaindltd+++layll++D+++G e+e++ +++ +++v+gk ++++++e+d+++lpw+el+vdlv+e+
MMSYN1_0607 4 KVAINGFGRIGRLTFRQLFEK---DIEIVAINDLTDTKTLAYLLEFDTAQGiFCEGEISHTDN-SIIVKGK-EVKVFAEKDASNLPWSELKVDLVIES 96
79*****************99...89*************************545899*99999.5****96.6777779******************* PP
TIGR01534 98 tGafldkekalekhleagakkVllsaPskdeaaitlVygvNeeeldeseekiiSaASCTTnclapllkvleeefgiksglmtTvHayTadQkllDavh 195
tG+++dkeka ++h++agakkV++saP++++ +t+VygvN+++l s++ iiS ASCTTncl+p+ k+l+++f ik+g mtTvHa+T+dQ+llD h
MMSYN1_0607 97 TGFYTDKEKA-SAHIKAGAKKVVISAPATGD-LKTVVYGVNHKSLT-SDDVIISGASCTTNCLTPFTKALDDAFTIKKGFMTTVHAVTNDQRLLDLNH 191
*****99996.9******************7.66***********9.5*************************************************8 PP
TIGR01534 196 akdlrraRaaaeniiptstgaakavakvlpelagkltgeavRvPtpdvSlvdlvlnleke.vtkeevnaalkeaseg...lkgvlgysedelVSsDii 289
kd rr+Raaa ni+p++tgaakav++vlp+l+gkl+g a+RvPt ++S++dl++++e++ t+e++n+a+k+a e l + ++y+++++VSsDii
MMSYN1_0607 192 -KDVRRGRAAAWNIVPSTTGAAKAVSLVLPHLKGKLDGYALRVPTITGSITDLTVEFENQeLTVEQINNAVKKALEAdadLAKAMKYETRPIVSSDII 288
.********************************************************97659************98888999**************** PP
TIGR01534 290 gspkssivdakatkvtelk.eklvkvvaWYDNElgysnrlvd 330
gs+++si+da+ tkv++++ ++lvkv++WYDNE +y+++lv+
MMSYN1_0607 289 GSKYGSIFDATLTKVMNVDgKQLVKVCSWYDNESSYVSQLVR 330
*****************99899*****************996 PP
>> TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 292.9 1.0 6.5e-91 7.2e-88 1 322 [. 4 327 .. 4 330 .. 0.95
Alignments for each domain:
== domain 1 score: 292.9 bits; conditional E-value: 6.5e-91
TIGR01532 1 rvaingfgrigrnvlralyesgkraeievvalneladaaavayllkydtshgrfa.kevkvdrdqlyvnddairvlreselealdwrelgvdlvldct 97
+vaingfgrigr +r l+e+ +ie+va+n+l+d++++ayll++dt+ g f +e+++ ++ + v++ ++v+ e++ l+w el+vdlv++ t
MMSYN1_0607 4 KVAINGFGRIGRLTFRQLFEK----DIEIVAINDLTDTKTLAYLLEFDTAQGIFCeGEISHTDNSIIVKGKEVKVFAEKDASNLPWSELKVDLVIEST 97
69*****************96....79***************************7369**************************************** PP
TIGR01532 98 gvygsredgerfiaagakkvlfshpgaadldativygvnqedlsaeekivsnascttncivplikllddaigiesgtittihsamndqqvidayhndl 195
g y+ +e++ ++i+agakkv++s p++ dl t+vygvn+++l++++ i+s ascttnc p k ldda+ i++g +tt+h+ ndq+++d h+d+
MMSYN1_0607 98 GFYTDKEKASAHIKAGAKKVVISAPATGDL-KTVVYGVNHKSLTSDDVIISGASCTTNCLTPFTKALDDAFTIKKGFMTTVHAVTNDQRLLDLNHKDV 194
******************************.59***************************************************************** PP
TIGR01532 196 rrtraasqsiipvdtklakgierllpkladrleaiavrvptvnvtaldlsvtvk.kdvkanevnrvlreaaes..alrgivdytelplvsvdfnhdph 290
rr raa+ i+p t+ ak + +lp+l+++l+ a+rvpt+ + dl+v+ + ++ ++++n+ +++a e+ l ++y p vs d+ +
MMSYN1_0607 195 RRGRAAAWNIVPSTTGAAKAVSLVLPHLKGKLDGYALRVPTITGSITDLTVEFEnQELTVEQINNAVKKALEAdaDLAKAMKYETRPIVSSDIIGSKY 292
***************************************************98626799**********97665489********************* PP
TIGR01532 291 saivdgtqtrv...sgarlvkllvwcdnewgfanr 322
+i d t t+v g +lvk+ w+dne + +
MMSYN1_0607 293 GSIFDATLTKVmnvDGKQLVKVCSWYDNESSYVSQ 327
*********972225689***********988765 PP
>> TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.7 0.0 0.26 2.9e+02 3 42 .. 6 44 .. 4 61 .. 0.79
2 ! 11.7 0.2 2.2e-05 0.024 43 157 .. 66 181 .. 57 185 .. 0.77
3 ! 6.0 0.0 0.0011 1.3 236 271 .. 228 264 .. 217 285 .. 0.86
Alignments for each domain:
== domain 1 score: -1.7 bits; conditional E-value: 0.26
TIGR01296 3 aivGatGavGqellkvLeernfpidklvllasersaGkkv 42
ai G G++G+ + + L e++ +i ++ l+ ++ +
MMSYN1_0607 6 AING-FGRIGRLTFRQLFEKDIEIVAINDLTDTKTLAYLL 44
5544.59999999999999999999998888777665555 PP
== domain 2 score: 11.7 bits; conditional E-value: 2.2e-05
TIGR01296 43 kfkgkeleveeaeke...sfeg..idialfsaGgsvskefapkaakagviviDntsafrldedvPLvvpevnaeelkeakkkgiianPnCstiqlvvv 135
+kgke++v + + + ++ +d+ + s G + ke a+ kag+ + ++ + d vv vn+++l+ ii+ C+t l++
MMSYN1_0607 66 IVKGKEVKVFAEKDAsnlPWSElkVDLVIESTGFYTDKEKASAHIKAGAKKVVISA--PATGDLKTVVYGVNHKSLTSDD--VIISGASCTTNCLTPF 159
56666666644333311133333488888899999999999999988875443333..34578889**********9988..9*************** PP
TIGR01296 136 LkplkdeaklkrvvvstYqavs 157
k+l+d++ +k+ + t av
MMSYN1_0607 160 TKALDDAFTIKKGFMTTVHAVT 181
************9999999986 PP
== domain 3 score: 6.0 bits; conditional E-value: 0.0011
TIGR01296 236 atcvrvPvftghsesvsiefek.elsveevkelLkea 271
+ + rvP +tg +++efe+ el+ve++++ +k+a
MMSYN1_0607 228 GYALRVPTITGSITDLTVEFENqELTVEQINNAVKKA 264
5679****************9879********99988 PP
>> TIGR00978 asd_EA: aspartate-semialdehyde dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.8 0.2 7.8e-05 0.088 139 264 .. 143 264 .. 131 287 .. 0.72
Alignments for each domain:
== domain 1 score: 9.8 bits; conditional E-value: 7.8e-05
TIGR00978 139 GvivtnpnCstailtlalkPlidaasikkvivatlqavsGAGy......pGvs.sldildnviPyikgEEekiekEtkkilGkleegkvepaelevsa 229
vi+ + C+t lt k l da++ikk ++t+ av + + v + n++P +g + + ++ Gkl++
MMSYN1_0607 143 DVIISGASCTTNCLTPFTKALDDAFTIKKGFMTTVHAVTNDQRlldlnhKDVRrGRAAAWNIVPSTTGAAKAVSLVLPHLKGKLDG------------ 228
68999999*******999***********999999999865431111113333123344577887777777777777777777777............ PP
TIGR00978 230 tttRvPvleGHtesvfveld.kkldieeirealkef 264
+ RvP+ +G ++ + ve++ ++l +e+i +a+k+
MMSYN1_0607 229 YALRVPTITGSITDLTVEFEnQELTVEQINNAVKKA 264
778999999999999999852578888888887765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (338 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 300 (0.0668449); expected 89.8 (0.02)
Passed bias filter: 185 (0.041221); expected 89.8 (0.02)
Passed Vit filter: 27 (0.00601604); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.21
# Mc/sec: 2311.35
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0607 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0608 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0608.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0608/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0608 [L=312]
Description: dnaI 4=Probable DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-09 34.1 7.8 5.9e-09 33.4 7.8 1.4 1 TIGR00362 DnaA: chromosomal replication initiator protein Dn
2.6e-07 28.3 0.0 5.2e-07 27.4 0.0 1.5 1 TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
3.8e-05 20.5 0.1 7.6e-05 19.5 0.1 1.5 1 TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase
0.00046 17.0 0.0 0.00073 16.3 0.0 1.2 1 TIGR03689 pup_AAA: proteasome ATPase
0.0087 13.7 0.1 0.02 12.5 0.1 1.7 1 TIGR02673 FtsE: cell division ATP-binding protein FtsE
------ inclusion threshold ------
0.012 13.6 0.1 0.02 12.9 0.1 1.3 1 TIGR03499 FlhF: flagellar biosynthesis protein FlhF
Domain annotation for each model (and alignments):
>> TIGR00362 DnaA: chromosomal replication initiator protein DnaA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.4 7.8 7.9e-12 5.9e-09 101 247 .. 110 260 .. 4 266 .. 0.73
Alignments for each domain:
== domain 1 score: 33.4 bits; conditional E-value: 7.9e-12
TIGR00362 101 kselnpkytFdnFvvGksNkla..laaakavaenpgkay.nPlfiyGgvGlGKTHLlqAigneilkknpnakvvYvsaekFvndfvkalrekkieef. 194
++ +n++ + +F ++N+ ++ k+++++ +k y + +++yG++G+GKT + + ++n +++k n++v++ + + + ++ +++++++i+++
MMSYN1_0608 110 DEYFNTQLNNATFTLLDQNEKNirKTILKTIIKQIQKGYkKGFYLYGNSGVGKTYIFKVLANTLASK--NKTVIFSTLRSLIDKLKESFNSSEINSLt 205
4556666666666666666544114678889988776652689*********************999..8*********************9999752 PP
TIGR00362 195 .kekyrsvDlLLiDDiq..flagkektqeeffhtfnalleknkqivltsDrapkel 247
+k+++vD+L +DDi l+ + +f+++n +e++k +ts +++ l
MMSYN1_0608 206 lIKKIKTVDFLFLDDIGgeNLSLW-ARDDFLFEVLNYRMENQKPTFFTSNFSIDLL 260
269*************84445444.667899**************99997766655 PP
>> TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.4 0.0 7e-10 5.2e-07 23 131 .. 134 254 .. 114 303 .. 0.79
Alignments for each domain:
== domain 1 score: 27.4 bits; conditional E-value: 7e-10
TIGR03420 23 aellaalrelaeakaerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaqll...........vevlegleqaelvalDdv..ealagere 107
+++l+++ + ++ ++ +yl+G+sg+Gk+++ + +++++++++k++i+ l++l + l + ++++ + ++++ lDd+ e+l+ +
MMSYN1_0608 134 KTILKTIIKQIQKGYKKGFYLYGNSGVGKTYIFKVLANTLASKNKTVIFSTLRSLIDKLkesfnsseinsLTLIKKIKTVDFLFLDDIggENLSLWA- 230
56677777777999999******************************99888877665423333333322345788889999999999666777776. PP
TIGR03420 108 weealfdlynrlresgrkllvage 131
+ lf+++n +e+++ ++++
MMSYN1_0608 231 RDDFLFEVLNYRMENQKPTFFTSN 254
788999999999999996666665 PP
>> TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.5 0.1 1e-07 7.6e-05 297 357 .. 126 186 .. 101 214 .. 0.77
Alignments for each domain:
== domain 1 score: 19.5 bits; conditional E-value: 1e-07
TIGR04291 297 aateekedlpslsklidelakkekglillmGkGGvGkttvaaaiavkLaekglkvhLttsd 357
++e+++ l+++i++++k k+ + l G GvGkt + +a +La+k+++v ++t
MMSYN1_0608 126 DQNEKNIRKTILKTIIKQIQKGYKKGFYLYGNSGVGKTYIFKVLANTLASKNKTVIFSTLR 186
35677788889********************************************998853 PP
>> TIGR03689 pup_AAA: proteasome ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.3 0.0 9.7e-07 0.00073 216 245 .. 149 178 .. 132 193 .. 0.87
Alignments for each domain:
== domain 1 score: 16.3 bits; conditional E-value: 9.7e-07
TIGR03689 216 PkGvllyGPPGcGktliakavanslaekva 245
kG lyG G Gkt i k +an+la+k +
MMSYN1_0608 149 KKGFYLYGNSGVGKTYIFKVLANTLASKNK 178
59************************9875 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.5 0.1 2.7e-05 0.02 16 60 .. 135 181 .. 125 217 .. 0.83
Alignments for each domain:
== domain 1 score: 12.5 bits; conditional E-value: 2.7e-05
TIGR02673 16 eaLkdvslkiekg..eflfltGasGaGkttllklllgaekpsrGeve 60
++Lk + +i+kg + +l G+sG Gkt ++k+l +++ ++ +v
MMSYN1_0608 135 TILKTIIKQIQKGykKGFYLYGNSGVGKTYIFKVLANTLASKNKTVI 181
5777887888887334579****************999887776665 PP
>> TIGR03499 FlhF: flagellar biosynthesis protein FlhF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.9 0.1 2.6e-05 0.02 167 235 .. 126 184 .. 103 187 .. 0.63
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 2.6e-05
TIGR03499 167 kedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKTTTlAKLAarfvlehgkkkValiT 235
+++++++r+++++ + k++ ++ +kg + L G+ GvGKT ++K a+ + + ++k+V + T
MMSYN1_0608 126 DQNEKNIRKTILKTIIKQI------QKGYKKG--FYLYGNSGVGKTY-IFKVLANTLAS-KNKTVIFST 184
3344444444444444444......5555566..9**********85.77766666666.677887766 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (312 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 440 (0.0980392); expected 89.8 (0.02)
Passed bias filter: 175 (0.0389929); expected 89.8 (0.02)
Passed Vit filter: 49 (0.010918); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 2036.57
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0608 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0609 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0609.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0609/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0609 [L=394]
Description: dnaB 3=Putative DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (394 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 393 (0.0875668); expected 89.8 (0.02)
Passed bias filter: 93 (0.0207219); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 2829.00
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0609 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0611 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0611.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0611/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0611 [L=911]
Description: polA: DNA polymerase I 5=Equivalog DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.3e-237 787.4 38.8 5.9e-237 787.2 38.8 1.0 1 TIGR00593 pola: DNA polymerase I
Domain annotation for each model (and alignments):
>> TIGR00593 pola: DNA polymerase I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 787.2 38.8 1.3e-240 5.9e-237 2 888 .. 6 909 .. 5 911 .] 0.90
Alignments for each domain:
== domain 1 score: 787.2 bits; conditional E-value: 1.3e-240
TIGR00593 2 lLiDghslafRayfalkk....epLknskgeptnavyGfvkmllkllkeekp.eyvvvafdsekktfRheayeeYKanRketpeelaeqlplikelle 94
l++Dg+sl+fRa++a + + Lk+++g+ tnavy f++mll++++++ p +++++afd++kktfRh+ +YKanR +tp+el eq+++++e+l+
MMSYN1_0611 6 LVVDGNSLIFRAFYATAYspntSLLKTKSGVLTNAVYSFINMLLSVIHQRGPyDHILIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSVVREFLT 103
789************987666688***************************99********************************************* PP
TIGR00593 95 algitilevegyEADDviatLakkaeke..gyevviisgDkDllQlvsdnvkvlkl.kgktelteltaeavvekygvtpeqlvdlkaLvGDkSDnipG 189
+ +i+ +e+e+ EADD+++++ k aek+ +++ i+s+DkD++Ql+ ++v l++ +g++el+e++++++ ek+ + p+q+ d+ka+vGD+SDn++G
MMSYN1_0611 104 KANIQWFEQENIEADDIVGSICKYAEKQfdNLQAEILSSDKDMYQLITNKVICLNPvQGVNELEEVDTNKLFEKWQILPNQVPDYKAIVGDSSDNLKG 201
**************************98889*********************99999***************************************** PP
TIGR00593 190 vkgiGeKtAakLLkefgslekiyenlekikseklkekLkeekedallskelatietdvplevdledlrlkeedreklvelleelefkslkkklekles 287
v+giG+K+A+kL+++++ le+iy+nle+ik+ ++k+kL+++k++a+l k+lati+tdv le ++ + ++++e+l+++e+ slkk++++ +
MMSYN1_0611 202 VNGIGQKGAIKLIQQYQNLENIYNNLEQIKG-AIKTKLEQDKKMAFLCKDLATIKTDVILENFSF--KKLDFNVDNIYEFLNKYEMYSLKKRFTNILN 296
*******************************.***************************987665..89999***********************977 PP
TIGR00593 288 seaedkaeeeeeekelvakeeeekaeleevaekaekdalvleklleklkkakalaialeeasevakvseadgl........leteekdaklaevleke 377
+ ++++++ +++ +++ +++ e++ + l++e+l+e ++k k++ i ++++ +++ +++ ++ +++d + e l+++
MMSYN1_0611 297 LDFNPY-QNKKQNLDVKIINS-----WSKDYEDS-INYLYVESLEEDYHKDKIIGIGISNNKGNFYLDFKNKAqqlsffedTTLSSTDSLFEEFLNNS 387
776666.67777777776433.....33333333.3458999************99998853333333222235789999888889999999999988 PP
TIGR00593 378 tikkaleadakalaklLkakgiell..lvvedtmlaaylldpeetskelatlakkylkeelald..eeklkkea.klaekdkeealeelaakaaalar 470
+ kk + +d+k+++ lLk+++ ++l +d m+a y l+++ +s +l++ +k +++ + l+ ++ + k + k+ + d +++ +++++ka++l++
MMSYN1_0611 388 NLKKYT-YDIKKTTYLLKNHKYNVLasNFDFDFMVACYSLNANVVS-DLSNQIKLVDNL-IELEtiDQIFGKGVkKNPDIDLDIKSKYISKKAYLLKK 482
888877.************999998556678899999*99998888.688888777663.3333456777776515567889999************* PP
TIGR00593 471 laeelekeleeeelkslleeielPlskvLaeMEktGikvdkdylqelskelaeelakleee....iyelaGeefnlnSpkQLeevLFekLkLpskkkt 564
++l ++l++ ++ +l+ +i+ Pl++vL+++E +Gi +dk+ l+ ++++ ++++++e + + e + ++fn +SpkQ++e+LF+kLkLp+ +k
MMSYN1_0611 483 YSDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQmkilVAEEIDNNFNFSSPKQIQELLFDKLKLPNLEKG 580
***********************************************************98333345778889********************66654 PP
TIGR00593 565 ktgystdaevLekLaekheiiaeilleyReltklksTYvdellelvnkdtgriHTtFvQtgtaTGRLsSsnPNLQNiPirseegrkIRkaFvaekgwl 662
+t++evLekL + h+ii+ lle+R++tkl +TY+++ + + +d ++HT F+ t t TGRLsSs PN+QNi ir++e +++Rk F+ +++ +
MMSYN1_0611 581 ----TTSKEVLEKLITYHPIINL-LLEHRKYTKLYTTYLKGFEKFIFDD-SKVHTIFNHTLTNTGRLSSSYPNIQNISIRDNEQKEVRKIFITNNNKT 672
....568***********97655.55***********************.9*********************************************** PP
TIGR00593 663 lisaDYsQIELrvLAHlsqdenLieaFkegeDiHtetAaklfgveeedvtpeeRriaKtvnFGvvYGisafrLakelkisrkeAkefierYFerypgv 760
++s DYsQIELrvLA +s++ nLi+aF++++DiH + A+ +f+++ +++t+e+RriaK nFG++YG+ +f+La++l+is ++Ak+ i+ Y++ +p++
MMSYN1_0611 673 FLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASDLNISVNQAKQMIKDYYSAFPSL 770
************************************************************************************************** PP
TIGR00593 761 keyleqvveearkkgyvetllgRrryikdiksrnrkereaaeRaAlNapiQgsaADiiKiAMikldkalkerklkarlLLQvHDELlleapeeeaeev 858
e+ e++ve a ++gy++tl +Rrryi++++s+n++ r++ +R+A+N+piQg+a+Di+K+AMi + k+lke++l ar++ Q+HDE++le++ ++ e+
MMSYN1_0611 771 LEFKEKQVEIATSQGYITTLSNRRRYINELNSTNHNIRQFGKRIAVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQT 868
************************************************************************************************** PP
TIGR00593 859 kelvkevmeeave.....lk......vPLevevetgknWke 888
k++v +++e+a+e l+ v L+v ++gk+W +
MMSYN1_0611 869 KRIVVSELENALEklfldLNikeqvvVKLKVGESVGKTWFD 909
**********9863222211111122455555566666666 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (911 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 310 (0.0690731); expected 89.8 (0.02)
Passed bias filter: 61 (0.0135918); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.24
# Mc/sec: 5450.98
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0611 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0612 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0612.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0612/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0612 [L=987]
Description: dnaE 4=Probable DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.5e-219 728.9 42.3 7e-211 700.9 34.6 2.0 2 TIGR00594 polc: DNA polymerase III, alpha subunit
8e-10 35.0 47.7 0.00011 18.0 3.9 7.2 7 TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit,
Domain annotation for each model (and alignments):
>> TIGR00594 polc: DNA polymerase III, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.9 0.8 1.9e-12 4.3e-09 4 122 .. 7 113 .. 3 125 .. 0.85
2 ! 700.9 34.6 3.1e-214 7e-211 200 1022 .] 153 946 .. 140 946 .. 0.92
Alignments for each domain:
== domain 1 score: 32.9 bits; conditional E-value: 1.9e-12
TIGR00594 4 LhvHseyslldgaakikelvkkakelgmkalaltDhgnlfGavefykaakkegikpiiGvelyvatdsrfdkkkkekeathlillakneeGyrnLlkl 101
L + +y +l++ + i++ ++ +k+ +++ ++ + ++G ef+k+a+++ ikpiiG+++ + + t+li+ akn++Gy+ L ++
MMSYN1_0612 7 LTIKNQYDFLESLITIDQYIEFIKKNKLNYAFYSETHTMYGVAEFFKKATDNNIKPIIGLTIEFEDS------------TKLIIYAKNKKGYQILNFV 92
67889************************999***************************99887544............57***************** PP
TIGR00594 102 sslaylegfy.ykpridkelle 122
ss + gf y i + +le
MMSYN1_0612 93 SSFLND-GFNhYDYEIKEYILE 113
*99875.444366666666665 PP
== domain 2 score: 700.9 bits; conditional E-value: 3.1e-214
TIGR00594 200 nDvhyiekedaeaheillaiqtgktlsdekrlkfksdelylksaeemaelfadipealentveiaekcelvevklgepllPeyqipedkkskeeyl 295
n + y++ +d+++++il ai+t+kt+++ ++ ++ ++ +++ + ++ +++ + ei k++ + +++ l +y+ ++ +s eyl
MMSYN1_0612 153 NQISYLDINDQKTYNILNAIKTNKTINQIQNINN----YFYPDIDYLIKNYS-LENIKKVISEINSKVDFNLFDSNQKHLVKYKNINNLSS-YEYL 242
7899**********************98887763....33444566666664.5666666679999**98888999999999988888777.99** PP
TIGR00594 296 eelaeeGLkerlkaeeerakeraeykerlelEleviekmgfagYfLivwdfikyakdkgipvGpGRGsaagslvayalkitdidPlkydllFERFl 391
++ + Lk+ ++++ + + + y +rl++Ele+i++mgf++YfLiv d++++ak+++i vGpGRGsaagsl+ y+l+itdidPl+ydllFERFl
MMSYN1_0612 243 RQVCLLSLKK-YQQKIKPNLDLKLYINRLNYELEIIKQMGFSDYFLIVSDYVNFAKKNDILVGPGRGSAAGSLISYLLRITDIDPLEYDLLFERFL 337
********86.555555788899999********************************************************************** PP
TIGR00594 392 nPERismPDiDiDfcqerRdevieyvaekyGkdkvaqiitfgtlkaKavlkDvaRvldipyaeadklaKliPedkgltlkealeeeeqlkelleed 487
nP+R +PDiD+Df ++rR+ev+ey+ ekyGk++v+ i t+ t+ K++ +Dv Rv++i + ++k++K++ + ++ + e ++e++ l++ ++ +
MMSYN1_0612 338 NPDRSNLPDIDLDFQDNRREEVLEYLFEKYGKYHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVLDQYTNSDFLEFIKENKLLNDYFQ-N 432
**********************************************************************************999966666666.8 PP
TIGR00594 488 pevkelidiarklEglnrnagvHAagvviskepltdlvPlykdkesgaivtqysmkavEevgllKmDFLGLktLtliksalelikkkkgkikldlk 583
+ ke++ + +k+ gl r++++HAag+v+++ +l +lvP+ + g tq++m++++++gl+KmD LGL++Lt+i+++++li+ ++ + k++l+
MMSYN1_0612 433 DLFKEIFITMHKIIGLPRQTSTHAAGIVLTDCDLRELVPIKIGFN-GINQTQFDMNYLDALGLIKMDILGLRNLTTIQEIKHLIYLNQ-NLKISLN 526
89****************************************999.8*****************************************.6****** PP
TIGR00594 584 siplddkktfkllqegdttgvFqlesrgmkdllkrlkPdslediiavlALyRPGPlesalidsfidrKhgreeieypheelepiLketyGvivYqE 679
+i+l+dkk+f+ll++ +t g+Fqles+gm dl+ +++ ds+e+i ALyRPGP e +i+ +++ K+ + + + ++++ +iLk+tyG+ivYqE
MMSYN1_0612 527 KIDLNDKKAFELLKNKQTSGIFQLESKGMSDLISKMQVDSIEQISIASALYRPGPQE--MIPIYLENKKTN-KFKIIDKSVYEILKPTYGIIVYQE 619
*******************************************************95..9******99987.888899****************** PP
TIGR00594 680 qvmkiaqklagfslgeaDllRrAmgKKkaeelakekekFvegaekkgidkeiaeklfdlivkFaeYgFnksHaaaYalisyqtaylKanypaefla 775
qvm++ +k+a+fs ++aD++RrAm+KK++++++ +k +F++ a k++++ ++a+ +++ i+kF++YgFnksH+++Y++isy++ay+Ka++ +ef +
MMSYN1_0612 620 QVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSMKLEFINSAIKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYT 715
************************************************************************************************ PP
TIGR00594 776 alltseiddkekvakyieeakklgievlpPdinkseqeFeveekairyglgaikgvGeevvksiieeRe.kegkfksladfiervdlkkvnkkvlE 870
+ll +i ++ k ++yi+e +i+v +P++ +s+++++ +k+i l+ ik++G evvk+i +++ +e+ + ++++fi + ++k+n vl
MMSYN1_0612 716 SLLDQNIGNEIKTQQYIKELYDYKIKVNKPSVINSNFNYQIINKQIYMPLTCIKSIGYEVVKKINLAKSeNENMYLDIHNFILAMIKQKINVNVLQ 811
****************************************************************8887636788********************** PP
TIGR00594 871 alikaGafDslgknrktllaklddaldavekkkkakatgqlslFgaeeegekekkkeaaaeveelsekekLklEkEllGlyvsghPldevkkllke 966
+likaGa+D +++n+kt++++ld ++ ++++ k +++++ ++e+ + + +e++++ ++EkEl G+++ ++P+ ++k +
MMSYN1_0612 812 TLIKAGALDIFNYNKKTMIENLDLLISQANAYK-----QVNNILDDEKI----N----LIIYDEYEDEILASFEKELYGFFIDQNPILKLKTNNFN 894
*************************87665544.....45777766554....2....23567788888899***************999876666 PP
TIGR00594 967 laklvaledlevrekekvlvlgvlasvkkkikkkngkkmalltleDetgkievvvf 1022
l+ l ++ + + ++ +++lg + ++ k ik kn++kma++t+ D+t ++e+ +f
MMSYN1_0612 895 LN-L--IDISKLEYNKVQVILGYILKI-KEIKDKNNNKMAFVTVFDNTSELELTIF 946
66.4..444555544566666666555.55666********************998 PP
>> TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1.2 0.5 0.0056 13 112 187 .. 12 87 .. 6 121 .. 0.83
2 ! 18.0 3.9 4.9e-08 0.00011 504 679 .. 153 328 .. 134 332 .. 0.71
3 ! 7.9 0.0 5.4e-05 0.12 722 780 .. 330 388 .. 328 405 .. 0.87
4 ! 14.9 0.2 4e-07 0.0009 797 903 .. 437 544 .. 418 560 .. 0.80
5 ! 8.3 3.1 4e-05 0.091 1034 1068 .. 684 718 .. 649 724 .. 0.88
6 ! 8.8 0.9 2.9e-05 0.066 1112 1203 .. 728 823 .. 719 830 .. 0.81
7 ! 1.4 3.1 0.0051 11 7 61 .. 906 958 .. 899 987 .] 0.66
Alignments for each domain:
== domain 1 score: 1.2 bits; conditional E-value: 0.0056
TIGR01405 112 kmsqlDaitsveelvkqakkwglkaiaitDhnvvqafPelyklakkaglkviyGleaelvedkvpivlnekdqklk 187
+ l++++ +++++++ kk++l+ + ++ e++k a +++k i Gl+ e + ++ i++ ++++ ++
MMSYN1_0612 12 QYDFLESLITIDQYIEFIKKNKLNYAFYSETHTMYGVAEFFKKATDNNIKPIIGLTIEFEDSTKLIIYAKNKKGYQ 87
55567788999999***99999999999999999**********************99888877788777766554 PP
== domain 2 score: 18.0 bits; conditional E-value: 4.9e-08
TIGR01405 504 gdahylekedkiyrkilvaskglenklnraan..e.llPelelrtteemleelaflgeekakeivventnkiadqieeiqpikeklytPkiegadekv 598
+ yl+ +d+++++il a k ++ n+ n + ++P++ + ++ le+++ + e +++ n + ++++ k+ e ++v
MMSYN1_0612 153 NQISYLDINDQKTYNILNAIKTNKTI-NQIQNinNyFYPDIDYLIKNYSLENIKKVISEINSKVDF---NLFDSNQKHLVKYKNINNLSSYEY-LRQV 245
66789999999999999887776543.333322234888888888888888777766655444422...222222222333333223333333.3445 PP
TIGR01405 599 keltyekakkiYGdpLP.eiveqRiekeLksiiknGfaviYlisqkLvkksledGYlvGs.RGsvGsslvatllgitevnpLa 679
l+ +k +++ +L ++ +R++ eL+ i + Gf+ +li + v+ + ++ lvG+ RGs sl++ ll it+++pL
MMSYN1_0612 246 CLLSLKKYQQKIKPNLDlKLYINRLNYELEIIKQMGFSDYFLIVSDYVNFAKKNDILVGPgRGSAAGSLISYLLRITDIDPLE 328
5566666665555566437889*************************************76********************95 PP
== domain 3 score: 7.9 bits; conditional E-value: 5.4e-05
TIGR01405 722 diPfetflGfkgDkvPDiDLnfsgeyqakahnyvkelfGeektfraGtigtvaektayg 780
d+ fe fl + PDiDL+f + +++ +y+ e +G+ ++ t t+ k a
MMSYN1_0612 330 DLLFERFLNPDRSNLPDIDLDFQDNRREEVLEYLFEKYGKYHVGMITTYQTIGYKMAWR 388
5679************************9999999999999998888889998888865 PP
== domain 4 score: 14.9 bits; conditional E-value: 4e-07
TIGR01405 797 everlvqkltgvkRttGqhPGGiivvPkekdvydftPvqyPadDtnsewktthfdfesihd.nllklDiLGhDdPtvlkmLkdltgidp......kei 887
e+ ++k++g+ R t h Gi++ + d+ + P++ + +n t fd ++++ l+k+DiLG + t ++ +k l +++ ++i
MMSYN1_0612 437 EIFITMHKIIGLPRQTSTHAAGIVL--TDCDLRELVPIKIGFNGIN----QTQFDMNYLDAlGLIKMDILGLRNLTTIQEIKHLIYLNQnlkislNKI 528
56677899**************987..689*********9998766....699******98479**************99998876654111111677 PP
TIGR01405 888 PmdDkevlkifssvka 903
+Dk+ ++ + ++
MMSYN1_0612 529 DLNDKKAFELLKNKQT 544
7777777777766655 PP
== domain 5 score: 8.3 bits; conditional E-value: 4e-05
TIGR01405 1034 kYlfPkahaaaYvlmalriayfkvyyPleyYaayf 1068
+Y f k+h+ +Y ++ +ayfk ++ e+Y++++
MMSYN1_0612 684 NYGFNKSHSISYSYISYWLAYFKAHFTTEFYTSLL 718
699****************************9987 PP
== domain 6 score: 8.8 bits; conditional E-value: 2.9e-05
TIGR01405 1112 vleivlemleRGfklekidleksqatefliekdslipPfiaidGlGetvaksivear..eekeflsvedl...kkrtkisktlieklkelgvleel 1202
+ + + e+++ +k++k ++ +s+ + +i ++++ P+ i+ +G v k+i a+ +e+ +l ++++ + + ki+ +++++l + g l+ +
MMSYN1_0612 728 TQQYIKELYDYKIKVNKPSVINSNFNYQII-NKQIYMPLTCIKSIGYEVVKKINLAKseNENMYLDIHNFilaMIKQKINVNVLQTLIKAGALDIF 822
555678999999***********9776666.567999**************99766644889999***994444699***********99999876 PP
TIGR01405 1203 p 1203
+
MMSYN1_0612 823 N 823
5 PP
== domain 7 score: 1.4 bits; conditional E-value: 0.0051
TIGR01405 7 ekkvkvegkifkiekkelksgrtllkikvtDyseslilkkflkekedkelldelk 61
+k + g+i ki++++ k+++++ ++v D ++ l l f+ + +d d+l
MMSYN1_0612 906 NKVQVILGYILKIKEIKDKNNNKMAFVTVFDNTSELELTIFSSDYKDIS--DQLI 958
4445688***********************************8554432..2222 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (987 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 390 (0.0868984); expected 89.8 (0.02)
Passed bias filter: 60 (0.013369); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.25
# Mc/sec: 5669.50
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0612 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0613 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0613.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0613/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0613 [L=414]
Description: tyrRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.8e-114 378.8 10.4 8.7e-114 378.7 10.4 1.0 1 TIGR00234 tyrS: tyrosine--tRNA ligase
------ inclusion threshold ------
0.037 12.2 0.0 0.074 11.2 0.0 1.5 1 TIGR00125 cyt_tran_rel: cytidyltransferase-like domain
Domain annotation for each model (and alignments):
>> TIGR00234 tyrS: tyrosine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 378.7 10.4 3.9e-117 8.7e-114 2 405 .. 1 413 [. 1 414 [] 0.95
Alignments for each domain:
== domain 1 score: 378.7 bits; conditional E-value: 3.9e-117
TIGR00234 2 qetnilkelkkrgleeivseeeeelekklkkneklklylGvdPtaqslHlGhlvplkkLrdfqqaGhevvvligdataligdpsgkkevrkvleeeev 99
+++nil+elk+rgl +++++ e+++ + ++ ++ ++y+G+dPta+slH+Ghl+++ +L++f ++ +++++lig+at++igdps k+++r + ++++v
MMSYN1_0613 1 MKNNILEELKWRGLIKQITN-ESKILDAQN--NSDAVYCGFDPTADSLHVGHLMMIITLKRFADYNFKPIALIGGATGMIGDPSFKANERVLQTKDQV 95
579****************9.777777776..489*************************************************************** PP
TIGR00234 100 qenaesikkqlarfldfdkgklkfvnnsewlkklnyldfirdlgkifsvnrmlardafssRleenglslsefiYpllQayDfvaLdkd...dlqlGGs 194
++n ++i+ ql++++ ++ fvnn +wl+++ ++df+rd+gk+f + +la++++++R+++ gls++ef Y +lQayDf++L+k+ +q+GGs
MMSYN1_0613 96 EHNINKISAQLKQIIP----NVNFVNNNTWLSSISLIDFLRDIGKHFNLSYLLAKESIATRIQT-GLSVTEFCYTMLQAYDFYYLYKNnncSIQIGGS 188
***************7....69******************************************.8******************************** PP
TIGR00234 195 DQwgNilagidLirrnlps.kkqfgltvpLltkadGekmGkseggavsldes..spydfyqkvintpdelvkkilklftflgleeieklveek..sps 287
DQwgNi++gid+i ++ +k+ glt++Lltk+dG+k+Gk+e+gav+ld+ s y+fyq++ n+ d++ + lk +tfl++e+i++l +e+ ps
MMSYN1_0613 189 DQWGNITSGIDFISDTINKnNKAAGLTINLLTKSDGQKFGKTESGAVWLDKTktSEYEFYQFWFNQTDQDSINLLKCLTFLTKEQIDNLIKEHqnQPS 286
*************98877769******************************999*************************************9988889 PP
TIGR00234 288 lrevkellakeitklvhgeeaaekaealseaifsrn.......lvpdelkikrlekfggeielidllvksklvksksearrdikqggvkingekvkdl 378
++ ++ la+e+tk vh+++ ka +l+ea fs+ l++ l++ ++++++++id+l + k+ +sk+ear+ + ++++ in+++++d
MMSYN1_0613 287 KHLLQKALASEMTKFVHQQQGLDKALKLTEAFFSGDlfsltddLFKMALNSLPNTQINKDTKVIDALIEVKAASSKREAREFLTNKAIMINNQIIEDE 384
999********************************9997666655555555555678899************************************** PP
TIGR00234 379 eqilkeae..ekrvlvlrvGKkkflriei 405
+ +++ ++ +++ l++++GKkk++ i i
MMSYN1_0613 385 NTLISSFDliQNKYLLVKKGKKKYFVILI 413
**********9999**********99865 PP
>> TIGR00125 cyt_tran_rel: cytidyltransferase-like domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.2 0.0 3.3e-05 0.074 4 58 .. 38 93 .. 36 100 .. 0.71
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 3.3e-05
TIGR00125 4 fvGtFdplHlGHlklleeakelfde...livgvgsdefvnpekg.pvtsaeerlemlka 58
f++t d lH GHl ++ + k+ +d+ i ++g + + g p + a er+ ++k+
MMSYN1_0613 38 FDPTADSLHVGHLMMIITLKRFADYnfkPIALIGG---ATGMIGdPSFKANERVLQTKD 93
789*********************97776666664...333333355555555555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (414 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 332 (0.073975); expected 89.8 (0.02)
Passed bias filter: 121 (0.0269608); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 2972.61
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0613 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0614 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0614.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0614/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0614 [L=353]
Description: pncB 4=Probable Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.1e-32 108.5 0.0 8.2e-20 69.1 0.0 2.1 2 TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase
5.8e-06 23.7 0.0 1.9e-05 22.0 0.0 1.8 2 TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carbo
Domain annotation for each model (and alignments):
>> TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.1 0.0 3.6e-23 8.2e-20 39 257 .. 16 242 .. 6 248 .. 0.75
2 ! 37.4 0.0 1.5e-13 3.4e-10 260 311 .. 267 318 .. 262 329 .. 0.94
Alignments for each domain:
== domain 1 score: 69.1 bits; conditional E-value: 3.6e-23
TIGR01513 39 gyavlAGledllealealrfsde.dieyLaslglfd....defleyLrefrfs...gdvraleEGslvFpnePllqveaplleaqLlEtlvlniinfq 128
gy ++ ++ +e+l++++ ++ +++ + +++ e ++ L+ + ++++al++G+++ +eP+l+++++ + lE+++ i++ +
MMSYN1_0614 16 GYFIADYFKKTVEILKNFKHDQIiTMQFFQRNDNVVlcgiSEVIDLLKFASPNyddLEIYALNDGDIINSKEPVLKITGRYQDFGWLEGMIDGILSRN 113
5666666666666666666554324555554422211111344444432222211489**************************************** PP
TIGR01513 129 slvAtkaaRivlaakekkllefglRRaqgldaalkaaraayigGadg....tsnvlAgrlygipvaGTmAHafvqsfese.eeAFrayaklypkav.v 220
+ +At++ i aa++k +l++ l Ra ++ + + a+yigG+ +s + + +GTm Ha++q+f+ + ++A a+ k+yp++ v
MMSYN1_0614 114 TSIATNSKQIIDAANHKDVLNM-LDRADNYLTLASDGYASYIGGFRLfvteASLEYIDDKTVLQPSGTMPHALIQAFNGDtLKAADAFYKTYPNNKlV 210
*********************9.67899999999999*******975211134444556667899************987369**********98514 PP
TIGR01513 221 lLvDTydtlesglknaiavakelgekgkvvgvRlDSG 257
+L+D yd + ++ a++++++++ek + +vRlD
MMSYN1_0614 211 VLID-YD--NDCVNMAAKIGQHFKEKLY--AVRLDTS 242
5555.77..55699**********7665..*****64 PP
== domain 2 score: 37.4 bits; conditional E-value: 1.5e-13
TIGR01513 260 aelskevRkeldaagleevkIvvSneldEesiaklkaegapidvygvGtslv 311
++l +evRk+ld+ g +++kI+vS+ + ++i+++++++ p+d+ygvG l+
MMSYN1_0614 267 EQLVREVRKALDNVGCNHTKIIVSSSFSANKIKEFESKNVPVDIYGVGSALA 318
6899********************************************9986 PP
>> TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.0 0.0 8.5e-09 1.9e-05 22 115 .. 34 131 .. 16 156 .. 0.81
2 ? -1.4 0.1 0.12 2.7e+02 215 255 .. 272 315 .. 262 322 .. 0.63
Alignments for each domain:
== domain 1 score: 22.0 bits; conditional E-value: 8.5e-09
TIGR00078 22 keeekaeaslvak.eegvlaGlevaeevfeele....gveveelvkdGeeleagevvaelegdarslLlaERvaLNllqrlsgiAtatrklvealret 114
k+++ + +++++ +++vl+G++ + +++ + ++e ++dG+ +++ e v++++g +++ E ++ +l+r +iAt ++++++a++++
MMSYN1_0614 34 KHDQIITMQFFQRnDNVVLCGISEVIDLLKFASpnydDLE-IYALNDGDIINSKEPVLKITGRYQDFGWLEGMIDGILSRNTSIATNSKQIIDAANHK 130
5555555566655157889**9988887776655453444.56789*************************************************998 PP
TIGR00078 115 n 115
+
MMSYN1_0614 131 D 131
7 PP
== domain 2 score: -1.4 bits; conditional E-value: 0.12
TIGR00078 215 eavellkekap.svlvEaSGgitldnveeyaetg..vdvisvga 255
e+ ++l++ + + +S + ++++e+ +++ vd++ vg+
MMSYN1_0614 272 EVRKALDNVGCnHTKIIVSSSFSANKIKEFESKNvpVDIYGVGS 315
33344444332377778888899999999988772257777775 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (353 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 219 (0.0487968); expected 89.8 (0.02)
Passed bias filter: 102 (0.0227273); expected 89.8 (0.02)
Passed Vit filter: 16 (0.00356506); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 2413.92
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0614 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0615 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0615.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0615/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0615 [L=202]
Description: tRNA binding domain protein 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.2e-33 112.0 1.1 8.1e-33 111.6 1.1 1.1 1 TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subuni
Domain annotation for each model (and alignments):
>> TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 111.6 1.1 1.8e-36 8.1e-33 35 155 .. 79 196 .. 70 202 .] 0.90
Alignments for each domain:
== domain 1 score: 111.6 bits; conditional E-value: 1.8e-36
TIGR00472 35 eveelkkslkgvvvGkvlevekhPnadkLkvckVdigekellqivcgaknveagkkVvvAlegAkLpnglkIkksklrGveSeGMlCSleELgleeek 132
+++e+k++l+ +v+G+++e+e+++ ++ L++c+Vdi ++ +lqi+cga n +++ vvA+ +++Lpng I +sk+rGv S GMlCS++EL++e+++
MMSYN1_0615 79 NIYEVKQELQ-FVIGRIIECEPIEGTH-LNICQVDIKSE-ILQIICGASNARKKVVCVVATLNSWLPNGQQIVQSKIRGVDSFGMLCSYKELNIENDQ 173
6889999996.*************997.*********99.*********************************************************5 PP
TIGR00472 133 lsdgiivLd..edaelgkdiaeylg 155
+gii+L + ++g+ + + ++
MMSYN1_0615 174 --QGIIELGseYNNKIGESFWKEYY 196
..7*****96666678877765554 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (202 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 206 (0.0459002); expected 89.8 (0.02)
Passed bias filter: 109 (0.024287); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1450.40
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0615 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0616 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0616.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0616/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0616 [L=279]
Description: fakB 3=Putative Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.5e-65 217.9 2.1 3.9e-65 217.7 2.1 1.0 1 TIGR00762 DegV: EDD domain protein, DegV family
0.0014 14.4 2.7 0.0017 14.1 2.7 1.1 1 TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subu
------ inclusion threshold ------
0.012 13.3 0.0 0.019 12.6 0.0 1.3 1 TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
0.024 12.3 0.0 0.039 11.6 0.0 1.3 1 TIGR03147 cyt_nit_nrfF: cytochrome c nitrite reductase, acce
Domain annotation for each model (and alignments):
>> TIGR00762 DegV: EDD domain protein, DegV family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 217.7 2.1 3.5e-68 3.9e-65 1 274 [. 6 275 .. 6 277 .. 0.97
Alignments for each domain:
== domain 1 score: 217.7 bits; conditional E-value: 3.5e-68
TIGR00762 1 iaivtDStadlpeeliekydievvpltviid.gksYkdgvditpeefyeklkeskelpkTSqpspgeflevyeklleegdevlsihlssklSGtyqsa 97
ia++tDS+ d + + +d++v+pl + + +++Y d++++++++fy+ l++ ++ kTSq +pg++l+++++ll + d+v+++ +s++lSG y+++
MMSYN1_0616 6 IAVLTDSSFDG--RVSDYKDLYVIPLMIVTQdNQTYYDDENLSKDKFYNLLNS--QVLKTSQTTPGDMLQMWDDLLTKYDQVIFLPISKGLSGQYNTF 99
89*******87..555669*******98876589*******************..799**************************************** PP
TIGR00762 98 kqaaeevke..akvtviDsksaslglgllvleaaklakeGksleeilakleelrektklyfvvdtLeyLvkGGRiskaaaligslLkikpiltvddgk 193
k++++ ++ +kv v+D++++s+ ++ +v ++ +++k++k+++ei++ + l++++ +y+++++L+ L++GGRis aaa+++++Lki pil+ d g+
MMSYN1_0616 100 KMLQQTEEKyeNKVFVCDTSAVSVIMQEVVNKVFDWIKQNKTANEICDLVSYLANDFVTYIIPKNLDTLKQGGRISPAAAALAKILKITPILKYD-GS 196
*******9999**********************************************************************************98.** PP
TIGR00762 194 lvpvekvrgrkkalkklvelvkeeikdkkkkrvaiihadaeeeaeelkeklkeklpekeiliseigpvigtHtGpgalava 274
++ +r++kkalk+ ++l+keeikd k ++ i++++++e+ el e++ ++ + + l se++ vi++HtG +++a++
MMSYN1_0616 197 IDKQSTARTFKKALKEALSLLKEEIKDLK--TIDISYSRTDEKTLELIETIIKEEQLEIRLKSELTNVIASHTGTDTVALV 275
*************************9999..89***********************99999*****************987 PP
>> TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.1 2.7 1.5e-06 0.0017 538 681 .. 106 250 .. 76 268 .. 0.75
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 1.5e-06
TIGR02386 538 lkkfskegellettvGrvifneilpeelpyinkslskkeiselieklykklgikevaelldkikelGfkyatkagvtvsiedivvpdekkeilkeadk 635
+k+ ++ + +t + vi++e++++ +++i+++ + +ei l++ l + + + +++ ld++k+ G +++ a+ i i+ + + +++ ++
MMSYN1_0616 106 EEKYENKVFVCDTSAVSVIMQEVVNKVFDWIKQNKTANEICDLVSYLANDFVTYIIPKNLDTLKQGG-RISPAAAALAKILKITPILKYDGSIDK-QS 201
35666667788999**************************************************977.555555555566666655555555543.44 PP
TIGR02386 636 kvekvkkeyek..Gllteeerkkkvvei.Wsevkdkvtdelakllkkdk 681
+++ kk ++ ll ee + k+++i +s++++k + +++++k+++
MMSYN1_0616 202 TARTFKKALKEalSLLKEEIKDLKTIDIsYSRTDEKTLELIETIIKEEQ 250
45556665555115678888999****9556666666666666666664 PP
>> TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.6 0.0 1.7e-05 0.019 184 235 .. 117 166 .. 113 174 .. 0.87
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 1.7e-05
TIGR01829 184 atemvkavredvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatls 235
+t v+ + ++v++k+ + i ++ +++ei+++v++la + +y+ ++l+
MMSYN1_0616 117 DTSAVSVIMQEVVNKVFDWIKQNK--TANEICDLVSYLANDFVTYIIPKNLD 166
6889999***********997776..568*****************999986 PP
>> TIGR03147 cyt_nit_nrfF: cytochrome c nitrite reductase, accessory protein NrfF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.6 0.0 3.5e-05 0.039 56 102 .. 122 168 .. 108 183 .. 0.88
Alignments for each domain:
== domain 1 score: 11.6 bits; conditional E-value: 3.5e-05
TIGR03147 56 spvavdlrlevysmvdeGkseqeiidamteryGdfvrykPPlklstl 102
s + +++ +v++++++ k+ +ei d ++ dfv y P +l+tl
MMSYN1_0616 122 SVIMQEVVNKVFDWIKQNKTANEICDLVSYLANDFVTYIIPKNLDTL 168
4566677789****************************999998886 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (279 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 316 (0.07041); expected 89.8 (0.02)
Passed bias filter: 123 (0.0274064); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 2108.72
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0616 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0617 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0617.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0617/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0617 [L=283]
Description: fakB 3=Putative Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.1e-37 125.8 6.0 4.6e-37 125.7 6.0 1.0 1 TIGR00762 DegV: EDD domain protein, DegV family
Domain annotation for each model (and alignments):
>> TIGR00762 DegV: EDD domain protein, DegV family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.7 6.0 1e-40 4.6e-37 2 275 .. 4 280 .. 3 281 .. 0.91
Alignments for each domain:
== domain 1 score: 125.7 bits; conditional E-value: 1e-40
TIGR00762 2 aivtDStadlpeeliekydievvpltviid.gksYkdgvdi.tpeefyeklkeskelpkTSqpspgeflevyeklleegdevlsihlssklSGtyqsa 97
i++DS+a ++ ++ i+v+pl++ + + +Y d ++i ++e+++ek+ ++ +kTSq+spge+++ y++lle+ ++++ i ++ +lS++ q+a
MMSYN1_0617 4 GILVDSAAVYDPAEFKNTIIDVIPLHIVFPnNDEYLDIKNIvEQEKILEKVSMGE-NIKTSQASPGELEKKYDELLEQYEHIIHIPITNNLSSMLQTA 100
69***************************9567****88887999*******975.55**************************************** PP
TIGR00762 98 kqaaeevke.akvtviDs.ksaslglgllvleaaklakeGk..sleeilakleelrektklyfvvdtLeyLvkGGRiskaaaligslLkikpiltvdd 191
++++++ k +k+tv+ +a++g +l +l ak++k++k ++++ ++ +e+ +ek+ + +++ +L+ L GGR +++ ++ +lLk k+++
MMSYN1_0617 101 TLVSQDEKYkDKITVYQNnDLAAQGIALTALSLAKAIKSNKikTAQQAIDFIENFKEKVLIAIIPGDLKKLSNGGRAKGVITTVLNLLKTKLLIIWA- 197
****9998789****965168899****************88799**********************************************988776. PP
TIGR00762 192 gklvpvekvrgrkkalkklvelvkeeikdkkkkrvaiihadaeeeaeelkeklkeklpekeiliseigpvigtHtGpgalavav 275
++ + + r+ ++ ++kl++++++++k++k k +++ + + e+ +++ ++ + ++ ++ + ++H+G +++++++
MMSYN1_0617 198 KEPKKEAIGRTYNSLIEKLIKNLSNKFKKNKYKLYFLSTPLTSSKTVEIVKQILSDEK-INFVHGNVPNIYTIHAGVETIGFVA 280
4556667789999**************9999887888888888888888888876666.58999****************9976 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (283 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 316 (0.07041); expected 89.8 (0.02)
Passed bias filter: 88 (0.0196078); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1935.24
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0617 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0620 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0620.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0620/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0620 [L=154]
Description: transcription factor, Fur family 2=Generic Regulation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (154 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 374 (0.0833333); expected 89.8 (0.02)
Passed bias filter: 115 (0.0256239); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1105.75
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0620 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0621 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0621.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0621/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0621 [L=73]
Description: acpA 4=Probable Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.1e-12 43.8 0.8 4.5e-12 43.7 0.8 1.1 1 TIGR00517 acyl_carrier: acyl carrier protein
------ inclusion threshold ------
0.016 13.7 0.1 0.017 13.6 0.1 1.2 1 TIGR04069 ocin_ACP_rel: peptide maturation system acyl carri
Domain annotation for each model (and alignments):
>> TIGR00517 acyl_carrier: acyl carrier protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.7 0.8 2e-15 4.5e-12 19 76 .. 16 72 .. 2 73 .] 0.84
Alignments for each domain:
== domain 1 score: 43.7 bits; conditional E-value: 2e-15
TIGR00517 19 dedkvttdasfveDLgaDSLDtvELvmalEeeFdieipdeeAekiatVgdavdyieer 76
++ ++t+d++f + Lg+DSLD +++v+ lEe+ +i i+d++ ++t++d + iee
MMSYN1_0621 16 AKGNITKDSEF-KSLGLDSLDLMDMVVTLEEKLNIRISDDQLLSLRTIDDLLKVIEEL 72
46679999988.67*****************************************986 PP
>> TIGR04069 ocin_ACP_rel: peptide maturation system acyl carrier-related protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.6 0.1 7.7e-06 0.017 33 77 .] 27 69 .. 3 69 .. 0.90
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 7.7e-06
TIGR04069 33 eklglsprdLvlllldvekqFnikipeeeiaegkFstfnnilkii 77
++lgl dL+ + + e++ ni+i+ +++++ + t++++lk+i
MMSYN1_0621 27 KSLGLDSLDLMDMVVTLEEKLNIRISDDQLLS--LRTIDDLLKVI 69
57999*************************95..88999999998 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (73 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 134 (0.0298574); expected 89.8 (0.02)
Passed bias filter: 93 (0.0207219); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 551.74
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0621 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0632 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0632.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0632/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0632 [L=158]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (158 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 638 (0.142157); expected 89.8 (0.02)
Passed bias filter: 136 (0.030303); expected 89.8 (0.02)
Passed Vit filter: 17 (0.00378788); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1134.47
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0632 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0634 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0634.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0634/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0634 [L=804]
Description: leuRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.2e-304 1008.4 21.8 5.3e-302 1002.0 21.8 2.0 1 TIGR00396 leuS_bact: leucine--tRNA ligase
6.3e-74 247.4 22.7 2.2e-32 109.9 4.7 6.7 5 TIGR00422 valS: valine--tRNA ligase
3.6e-63 211.9 10.7 2.5e-24 83.3 0.7 3.1 3 TIGR00395 leuS_arch: leucine--tRNA ligase
2.9e-55 185.8 16.9 1.1e-28 97.8 9.4 5.8 3 TIGR00392 ileS: isoleucine--tRNA ligase
2.3e-30 103.8 10.3 2.3e-21 74.1 0.1 3.9 4 TIGR00398 metG: methionine--tRNA ligase
6.7e-10 36.6 1.0 5.2e-07 27.0 0.1 3.2 3 TIGR00435 cysS: cysteine--tRNA ligase
0.0001 19.2 0.0 0.052 10.3 0.0 2.8 3 TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino
Domain annotation for each model (and alignments):
>> TIGR00396 leuS_bact: leucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1002.0 21.8 8.2e-305 5.3e-302 2 842 .. 4 803 .. 3 804 .] 0.96
Alignments for each domain:
== domain 1 score: 1002.0 bits; conditional E-value: 8.2e-305
TIGR00396 2 kleeieekwqqkwkekkvkkveedsekkkyYiLsmfPYPsga.lHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaiergtaPakwte 98
++++ie+kwq++wke++ +k++++se+ k YiL+mfPYPsg lH+GH+++Yt+tDv sR+kr++gy+vlhPiG+DaFGlPae++a+++g++P+++t
MMSYN1_0634 4 SHKAIEKKWQKYWKENNIYKTTNNSEN-KAYILDMFPYPSGSgLHVGHIKGYTATDVYSRFKRMQGYDVLHPIGWDAFGLPAEQYALKTGNDPREFTL 100
6899****************9998877.9********************************************************************* PP
TIGR00396 99 eniakmkkqlqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevidsdG..rseRgdasvekkelkqwvlkit 194
+ni+++k ql+++gfsyd+d+e++t+dp+Yyk tqwiF +l++kgLa++++++vnwc+e++tvLan+e+i+ +G +seRg+++v kk+++qwvlkit
MMSYN1_0634 101 QNIENFKVQLNKMGFSYDYDKEINTADPNYYKTTQWIFKQLYKKGLAENRDIDVNWCQELGTVLANDEIIEKNGlmVSERGEYPVVKKKMRQWVLKIT 198
***************************************************************************99********************* PP
TIGR00396 195 kyaekLledLeeLeWpesvkemqrnWiGkseGveleFkiedekekiavfttrpdtlfgvtylalaaehplvkkvakenkk..vaefikkaeqkseaer 290
+ya+kLl++L++L+Wp+svke+qrnWiGkseG e++Fk +d +i vfttr+dt+fg ty++la+e++lv k+++ +k v+++i+ +++kse+er
MMSYN1_0634 199 DYADKLLDGLDNLDWPNSVKELQRNWIGKSEGCEINFKSNDI--NIPVFTTRADTIFGATYIVLAPENELVLKLTTPEKLdeVKKYIELTANKSEIER 294
*************************************98876..7***************************9998665445**************** PP
TIGR00396 291 tkeekekkgvktglkainPltkekiPiyvanyvlaeYGtgavmgvpahderDfeFakkyklkikevikkaekdlkeealteegvlvnsgefsglksee 388
++e+++k+gv+ g++a nPltke+i i++++yvl++YG+ga+m+vpahd+rD++Fa k++l+i+ vi+++++ +a++ eg+++ns+ ++l+ +
MMSYN1_0634 295 KDESRTKTGVFIGSYATNPLTKEQIQIWISDYVLNDYGSGAIMAVPAHDKRDWDFATKFNLPIRFVISTKDE---SKAFVGEGIHINSEFLNDLDRVQ 389
********************************************************************6544...489******************** PP
TIGR00396 389 akekiikllekekkgkkkvnYklrDWlvsRqRYWGePiPiihledgnavpvpeedLPvkLPeleeldgeG.vesPlskikewvkvkkpslgkkakret 485
a + i +++ek+++gkkk+nYklrDWl+sRqR++GeP+P++++++ n+v ++++LP++LP ++ ++++ +esPl++ ++wv+vk + + kret
MMSYN1_0634 390 ALQVIHNYVEKNNLGKKKINYKLRDWLFSRQRFYGEPFPVLYDKNNNIVLIEDDNLPITLPTTDYIKPTNtGESPLANVRNWVNVKIGDKE--YKRET 485
********************************************************************9889****************555..56*** PP
TIGR00396 486 dtmdtfidssWYylryldpknk......ekaldkeklekylPvDlYiGGieHavlHLLYaRFfhkllrdlglvstkePfkkLltqGmvlgfvykengk 577
+tm++ ++ssWY++ y+ + k + ++k+ lek+lPvDlYiGG eHav HLLYaRF++++l+dlgl++t+ePfk+L++qGm+lg ++++
MMSYN1_0634 486 NTMPQSAGSSWYFIAYILADSKnnlidlTSDEAKKRLEKWLPVDLYIGGQEHAVGHLLYARFWTHFLYDLGLLPTNEPFKRLFNQGMILG----PDNR 579
****************9887553478777778899*******************************************************....7887 PP
TIGR00396 578 vpadellekdekvkdkedkelvvvslekmskskkngidPqeivkkyGaDalRlyilFasPieksleWdesgleGaeRfldrvynlvkeilsekeakte 675
kmsks +n+i+P+++++ +GaDalRly++F++P+++sl W+ +gl+ ++l+r y+++++i
MMSYN1_0634 580 ---------------------------KMSKSWGNVINPDDVIDTHGADALRLYEMFMGPLDASLPWSFDGLDASLKWLNRCYRMINKI--------- 641
...........................9**********************************************************993......... PP
TIGR00396 676 lkeealeeaekelrrevhkalkkvtedlekkeslntviselmkllnallkakkeelllealkalvtvlspiaPhlaeelaeklgeeeseikqakwpkv 773
e ++++++l + ++ ++kkvt+ +++ + +nt+is+lm+l+na++k++ +++++ +++++v++ls +aPhl+eel+eklg ++s+++ ++wp++
MMSYN1_0634 642 ---EFSNTNNHKLDYVYNDVVKKVTQMIQELK-FNTAISQLMVLVNAIYKEELNTVYKPYIEGFVKMLSLFAPHLSEELWEKLG-NNSSVTLQTWPEF 734
...2346778999****************999.***************************************************.566788888**** PP
TIGR00396 774 detalvedkvkivvqvngkvkakievakeadeeeveelakkdeevkkylenkkikkvivvknklvnvvi 842
det++++++v i +qvngk++++iev+k +d+e++ +la+k+e++ k ++++ki k i+v +++vn+vi
MMSYN1_0634 735 DETKIIKNTVVIALQVNGKLRSTIEVEKGTDKETLINLAEKNENIIKFIKDHKILKRIAVIDRIVNIVI 803
********************************************************************9 PP
>> TIGR00422 valS: valine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.9 4.7 3.4e-35 2.2e-32 4 194 .. 2 176 .. 1 199 [. 0.87
2 ? -2.2 0.0 0.26 1.7e+02 343 396 .. 177 226 .. 172 228 .. 0.86
3 ! 3.4 0.0 0.0054 3.4 207 236 .. 237 266 .. 227 274 .. 0.81
4 ! 34.9 0.0 1.7e-12 1.1e-09 240 334 .. 305 407 .. 294 411 .. 0.85
5 ! 95.1 5.6 1e-30 6.5e-28 397 784 .. 411 798 .. 408 804 .] 0.76
Alignments for each domain:
== domain 1 score: 109.9 bits; conditional E-value: 3.4e-35
TIGR00422 4 kYdpkevekklyekweesgvfkpdedeekesfiiviPPPnvTGs.lHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkklkaegkt 100
++ k++ekk+++ w+e++++k+ +++e++ +i+++ P ++ Gs lH+GH + +D+ R+krm+g++vl++ G+D g++ ++ + ++g
MMSYN1_0634 2 DFSHKAIEKKWQKYWKENNIYKTTNNSENKAYILDMFP-YPSGSgLHVGHIKGYTATDVYSRFKRMQGYDVLHPIGWDAFGLPAEQY----ALKTG-- 92
577899****************************9965.666655**************************************8654....33332.. PP
TIGR00422 101 kedlgreefvekilewkeesgetikeqlkrLGvsldwsrerfTldeelskavkeaFvrlyeeglIyrgkrlvnwdpkletaisdlEveykevkg 194
+d +r e++ +++e k ql+++G+s+d+++e T d++++k+++ F++ly++gl vnw+ +l t++++ E++ k+
MMSYN1_0634 93 -ND-PR--------EFTLQNIENFKVQLNKMGFSYDYDKEINTADPNYYKTTQWIFKQLYKKGLAENRDIDVNWCQELGTVLANDEIIEKNGLM 176
.22.33........68888999999**************************************************************9998655 PP
== domain 2 score: -2.2 bits; conditional E-value: 0.26
TIGR00422 343 tceRsktvvEpllskQWfVkvekLadkaleaaekegeikfvPkrfekeylsWle 396
++eR++ +v +QW k++ adk+l+ +++ +++ P+++++ ++W+
MMSYN1_0634 177 VSERGEYPVVKKKMRQWVLKITDYADKLLDGLDN---LDW-PNSVKELQRNWIG 226
689999999999999********99999999995...776.9999999999986 PP
== domain 3 score: 3.4 bits; conditional E-value: 0.0054
TIGR00422 207 sgkdklvvATTRPEtllgdtavaVhPeDer 236
s++ ++ v TTR +t++g t ++ Pe e
MMSYN1_0634 237 SNDINIPVFTTRADTIFGATYIVLAPENEL 266
433478999*****************9985 PP
== domain 4 score: 34.9 bits; conditional E-value: 1.7e-12
TIGR00422 240 lvgkkvilPlvnrkipiiaDeevdkefGtGvvkvtpahDknDyevgkrhklelinildedgklneea.......gey.qglerfearkkvvedlkeeg 329
++g + ++Pl++++i+i ++v +++G+G+++ pahDk D+ + ++++l++ ++ ++ + ++ + +e+ ++l+r++a + + + +++++
MMSYN1_0634 305 FIGSYATNPLTKEQIQIWISDYVLNDYGSGAIMAVPAHDKRDWDFATKFNLPIRFVISTKDESKAFVgegihinSEFlNDLDRVQALQVIHNYVEKNN 402
89999****************************************************99887666667778888666367999999888888888888 PP
TIGR00422 330 llvki 334
l +k+
MMSYN1_0634 403 LGKKK 407
76665 PP
== domain 5 score: 95.1 bits; conditional E-value: 1e-30
TIGR00422 397 elkdWcISRQliwghriPvwyeketgevvvakeeaeekektklgs........................keleqdeDVLDTWfsSs..lwplstlgWp 468
+l+dW SRQ+++g + Pv y+k+ v +++++ + +t +++ ke+++++ + Ss + + ++ +
MMSYN1_0634 411 KLRDWLFSRQRFYGEPFPVLYDKNNNIVLIEDDNLPITLPT-TDYikptntgesplanvrnwvnvkigdKEYKRETNTMPQSAGSSwyFIAYILADSK 507
799******************77777777776665555554.22223344555788888888888888899999999987655444111222222322 PP
TIGR00422 469 .........eekkdlkkfyptsllvtgfDIiffWvarmillslaltg......qvPfkevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRf 551
e kk l+k+ p++l + g + ++ + + +l + Pfk ++ +g++ + ++rKmSKS gNvi+P d+i+ +GaDalR+
MMSYN1_0634 508 nnlidltsdEAKKRLEKWLPVDLYIGGQEHAVGHLLYARFWTHFLYDlgllptNEPFKRLFNQGMILGPDNRKMSKSWGNVINPDDVIDTHGADALRL 605
55666666477799***********998766666666666666555555666689******************************************* PP
TIGR00422 552 tlaalvaaGrDinldlkkveaarkFlnKlwnasrfvlmnledkkeleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdw 649
+ + + ++ + ++a+ k+ln+ + + + ++ ++++d + n+++k+v++ +++ +f++a+++l+ +
MMSYN1_0634 606 YEMFMGPLDASLPWSFDGLDASLKWLNRCYRMINKIEFSNTN----------NHKLD-Y---VYNDVVKKVTQMIQELKFNTAISQLMVLV------- 682
***99999999******************9854322222121..........12222.3...4699******************9998773....... PP
TIGR00422 650 yiElvKkelyeeeeeekkeakstlaivLdkllrllhpfiPflteeiyqklkekadsimlasyPeveeelvdekaekefelvkeiikevRnlkaesnia 747
++ k+e++++ + ++ +++l+ f+P+l+ee+++kl ++ s++l+++Pe++e k+ k++ ++ +++ +l++ +++
MMSYN1_0634 683 ------------NAIYKEELNTVYKPYIEGFVKMLSLFAPHLSEELWEKLGNN-SSVTLQTWPEFDET----KIIKNTVVI--ALQVNGKLRSTIEVE 761
............223344567788899*************************9.9**********994....554444333..344445788889999 PP
TIGR00422 748 lnaklevllkleeaeeeaerlkksaedlkklikleev 784
+ + e+l++l e++e+ ++ k+++ lk+++ ++++
MMSYN1_0634 762 KGTDKETLINLAEKNENIIKFIKDHKILKRIAVIDRI 798
9999999999999988888888899999988887765 PP
>> TIGR00395 leuS_arch: leucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.9 0.2 5.5e-24 3.5e-21 2 83 .. 7 89 .. 6 108 .. 0.90
2 ! 61.6 0.4 1.4e-20 8.7e-18 125 316 .. 107 347 .. 94 358 .. 0.90
3 ! 83.3 0.7 3.9e-27 2.5e-24 560 846 .. 514 786 .. 482 800 .. 0.78
Alignments for each domain:
== domain 1 score: 72.9 bits; conditional E-value: 5.5e-24
TIGR00395 2 eiekkyqkrWeeekifeadpddrekffltvayPylnGv.lhaGhlrtftivevvarfermkgknvLfplgfhvtGtPilglae 83
+iekk+qk W+e++i+++ ++++k ++ +Py++G lh+Gh++ +t ++v+ rf+rm+g+ vL+p+g+ G P a
MMSYN1_0634 7 AIEKKWQKYWKENNIYKTTNNSENKAYILDMFPYPSGSgLHVGHIKGYTATDVYSRFKRMQGYDVLHPIGWDAFGLPAEQYAL 89
8************************************66*************************************9766665 PP
== domain 2 score: 61.6 bits; conditional E-value: 1.4e-20
TIGR00395 125 esalkslGysidWrrefkttdevydrfieWqlrkLkelGlikkGehpvrycpkdenpvedhdllsGegvtiv...eyilikfkledga.......... 209
+ +l+++G+s d+ +e +t d++y + +W +++L ++Gl + v++c++ + + ++ + +g + ey ++k k+ +
MMSYN1_0634 107 KVQLNKMGFSYDYDKEINTADPNYYKTTQWIFKQLYKKGLAENRDIDVNWCQELGTVLANDEIIEKNGLMVSergEYPVVKKKMRQWVlkitdyadkl 204
56789******************************************************999999888777533379****9999988999999**** PP
TIGR00395 210 ...................................lylvaatlrPetvyGvtnvfvnPeieyvivevgdekfivskeaveklsyqklklkviee..vk 270
+ +++ t r +t++G+t + + Pe e v + ek k+ + +l+ +k +++ +e k
MMSYN1_0634 205 ldgldnldwpnsvkelqrnwigksegceinfksndINIPVFTTRADTIFGATYIVLAPENELVLKLTTPEKLDEVKKYI-ELTANKSEIERKDEsrTK 301
***************************************************************9999999987777765.577777777666551167 PP
TIGR00395 271 gkqligkkvkaPvvgkevpiLPaefvdaekatGvvlsvPahaPady 316
++ +ig + ++P+++++++i ++v +++ G +++vPah d+
MMSYN1_0634 302 TGVFIGSYATNPLTKEQIQIWISDYVLNDYGSGAIMAVPAHDKRDW 347
778**************************************98875 PP
== domain 3 score: 83.3 bits; conditional E-value: 3.9e-27
TIGR00395 560 ileklreefeyfyPldlrisakdLipnhLtfyif.th....vaifPeefWPrgivvnGyvl.legkklskskGnlltlkeavekfGadvarlylldaa 651
+ ++ ++ +e + P+dl i +++ hL++ f th ++P + + + +G++l +++k+sks Gn++ ++++ +Gad+ rly + +
MMSYN1_0634 514 TSDEAKKRLEKWLPVDLYIGGQEHAVGHLLYARFwTHflydLGLLPTNEPFKRLFNQGMILgPDNRKMSKSWGNVINPDDVIDTHGADALRLYEMFMG 611
4567788999**************999*98753324522225799999999999999998735899******************************** PP
TIGR00395 652 elvedadfkeseveaakkrlerlkefaeeiakksdlevgeelsfldrwllsrlnkaikevkealenlelrkavkaalfelkkdvdyyrrrsgenvkdv 749
l+ + + ++a k l+r +++ ++i + + ++ l n +k+v++ +++l++ a+ l l +++ y++ ++ v
MMSYN1_0634 612 PLDASLPWSFDGLDASLKWLNRCYRMINKIEFSN---TN------NHKLDYVYNDVVKKVTQMIQELKFNTAI-SQLMVLVNAI--YKEELNT----V 693
**********999999999998888888776653...33......3344445688899999999999999999.5566666664..7765544....5 PP
TIGR00395 750 laevleaiikLlaPfaPhlaeelyeevGkegfvseakfPevseeavdkevekaeeylrnlvrdikeiakiaaskpkkvylltsedWkvevlkvvkel 846
+ ++e ++k+l faPhl+eel+e++G++++v+++ +Pe++e+++ k+ ++ ++ +++ +++++ + k+ + +e+ + +++k +k+
MMSYN1_0634 694 YKPYIEGFVKMLSLFAPHLSEELWEKLGNNSSVTLQTWPEFDETKIIKNTVVIAL---QVNGKLRSTIEVEKGTDKETLINLAEK-NENIIKFIKDH 786
679****************************************977666555544...345556666777777777777777665.44666666654 PP
>> TIGR00392 ileS: isoleucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 97.8 9.4 1.8e-31 1.1e-28 6 394 .. 3 401 .. 1 411 [. 0.83
2 ! 70.4 0.6 3.5e-23 2.2e-20 459 655 .. 411 625 .. 396 694 .. 0.71
3 ! 13.4 1.1 5.8e-06 0.0037 723 822 .. 654 751 .. 629 788 .. 0.63
Alignments for each domain:
== domain 1 score: 97.8 bits; conditional E-value: 1.8e-31
TIGR00392 6 anlskkeekilkkweekdifekvkkkkedkkefvlhdGPPyanGe.ihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekklgiekk 102
++ + e+k +k+w+e++i+++++++++ + ++ d Py +G+ +h+gh+ + D++ r+k+mqG++v + GWD GLP E+ k
MMSYN1_0634 3 FSHKAIEKKWQKYWKENNIYKTTNNSEN---KAYILDMFPYPSGSgLHVGHIKGYTATDVYSRFKRMQGYDVLHPIGWDAFGLPAEQYALKTG----- 92
566789**************99887544...46677999***99769**************************************98776543..... PP
TIGR00392 103 eeiesleveefrekcrefalkaieeqkeqfqrlgvlvDfekpYltldkeyeesvlellkelaekgllkrdlkvvywspeletaLaeaEveykeykdvk 200
+ ref l++ie+ k q++++g D++k+ t d++y +++ +++k+l++kgl + + v+w++el t La+ E+ +k+
MMSYN1_0634 93 ------------NDPREFTLQNIENFKVQLNKMGFSYDYDKEINTADPNYYKTTQWIFKQLYKKGLAENRDIDVNWCQELGTVLANDEIIEKN---GL 175
............3457899**********************************************************************9877...55 PP
TIGR00392 201 dpsiyvkfkvkkeekteakvkl...........................................slliWTtTPWTLpsNlaiavnpdleYalveles 255
s +++v+k++ + k + + Tt T+ + i + p+ e +l ++
MMSYN1_0634 176 MVSERGEYPVVKKKMRQWVLKItdyadklldgldnldwpnsvkelqrnwigksegceinfksndiNIPVFTTRADTIFGATYIVLAPENELVLKLTT- 272
555566889998777774444477888999**********************************9999*********************98776665. PP
TIGR00392 256 keevlilakkllekllkkageedleiikkvkgsdlegleyehplsekkeqleevafvvlggdhVttedGtGivHtAPghGeeDyevgkkygle..evl 351
e+l kk +e ++k + + + ++ k g ++++pl++++ ++ +d+V + G+G++ P+h + D + k +l+ v+
MMSYN1_0634 273 -PEKLDEVKKYIELTANKSEI-ERKDESRTKTGVFIGSYATNPLTKEQI-------QIWISDYVLNDYGSGAIMAVPAHDKRDWDFATKFNLPirFVI 361
.67777677777777776553.455555556666677788888887776.......56666*******************************865677 PP
TIGR00392 352 lpvdekgvyteevadlkgrfvkdadkdvlkankaiiekLkekn 394
+ de+ ++ e ++ + f++d d v + ++i++ ekn
MMSYN1_0634 362 STKDESKAFVGEGIHINSEFLNDLDR-VQAL--QVIHNYVEKN 401
88888888999999998888888776.3332..3444444444 PP
== domain 2 score: 70.4 bits; conditional E-value: 3.5e-23
TIGR00392 459 nrkdWciSRqRyWGvPipvwvaekteel.ivvgsieeleekiekkgidawiedlhkdlldkitlkskeggeykreedvlDvWfdSGsspyavleykle 555
+ +dW SRqR++G P pv+++++ + + i+ + + + + + + e ++ +++ +k ++ +eykre++++ Gss+y ++ +
MMSYN1_0634 411 KLRDWLFSRQRFYGEPFPVLYDKNNNIVlIEDDNLPITLPTTDYIKPTNTGESPLANVRNWVNVKIGD-KEYKRETNTMPQ--SAGSSWYFIAYILAD 505
579*********************76555555555544444444444444444455555555555554.89********85..678887755433332 PP
TIGR00392 556 n.............ekkkevfpadlilEGsDQtrGW.....Fyssllisvals.dkapykkvithGfvldekGrKMSKslgNvvdpekvikkyGaDvl 634
+ ++ +++ p+dl++ G G F + l l + p+k++ +G++l + rKMSKs gNv++p++vi+++GaD+l
MMSYN1_0634 506 SknnlidltsdeakKRLEKWLPVDLYIGGQEHAVGHllyarFWTHFLYDLGLLpTNEPFKRLFNQGMILGPDNRKMSKSWGNVINPDDVIDTHGADAL 603
233689999988766778999**********99886333335555555554444689***************************************** PP
TIGR00392 635 Rlyvass.dpaedlkfseeilk 655
Rly ++ +l s ++l+
MMSYN1_0634 604 RLYEMFMgPLDASLPWSFDGLD 625
***6655355556666655555 PP
== domain 3 score: 13.4 bits; conditional E-value: 5.8e-06
TIGR00392 723 vlraledfvseeLsnwYlriskdrlyaekkdedkraaqttlyeiletlvkllapilpflaeeiyqnlkeekkeesvhlnefpevdeeavde.aleasm 819
v++ + ++v++ + + ++ + ++l + k + t+ +e +vk+l+ ++p+l+ee++++l + ++sv l+ +pe de ++ + ++ +
MMSYN1_0634 654 VYNDVVKKVTQMIQELKFNTAISQLMVLVNAIYKEELNTVYKPYIEGFVKMLSLFAPHLSEELWEKLGN---NSSVTLQTWPEFDETKIIKnTVVIAL 748
34444444444444444443333333333333444466667778999********************99...57*********988766540444444 PP
TIGR00392 820 klv 822
+++
MMSYN1_0634 749 QVN 751
444 PP
>> TIGR00398 metG: methionine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.5 1.1 1.2 7.5e+02 268 284 .. 8 21 .. 4 28 .. 0.73
2 ! 74.1 0.1 3.5e-24 2.3e-21 7 133 .. 38 167 .. 32 191 .. 0.89
3 ? 2.7 0.0 0.015 9.8 208 242 .. 396 429 .. 377 439 .. 0.77
4 ! 31.8 0.1 2.2e-11 1.4e-08 299 448 .. 547 684 .. 500 691 .. 0.82
Alignments for each domain:
== domain 1 score: -3.5 bits; conditional E-value: 1.2
TIGR00398 268 atekfkkywkekedael 284
++k++kywke+ ++
MMSYN1_0634 8 IEKKWQKYWKEN---NI 21
568999999988...33 PP
== domain 2 score: 74.1 bits; conditional E-value: 3.5e-24
TIGR00398 7 lyYangk.pHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAesegltPkelvdklaeefkklfkllnisf..drFirTtdeehkeivq 101
+Y++g+ +H+Gh+ + + Dv+ r+kr++G++vl+ g D++G + e+ A + g +P+e+ ++ e+fk +++ ++ s+ d+ i T d++ +++q
MMSYN1_0634 38 FPYPSGSgLHVGHIKGYTATDVYSRFKRMQGYDVLHPIGWDAFGLPAEQYALKTGNDPREFTLQNIENFKVQLNKMGFSYdyDKEINTADPNYYKTTQ 135
689999758**************************************************************999888765116789************ PP
TIGR00398 102 kifekllenGyiyekeikglYcvecesflpdr 133
if++l+++G+ ++++i+ +c e + l++
MMSYN1_0634 136 WIFKQLYKKGLAENRDIDVNWCQELGTVLAND 167
**********************9988888766 PP
== domain 3 score: 2.7 bits; conditional E-value: 0.015
TIGR00398 208 lasevknvlenflkegLkdlaitRdlvewGipvPk 242
+ e++n ++ ++ L+d+ +R+ + +G p+P
MMSYN1_0634 396 NYVEKNNLGKKKINYKLRDWLFSRQRF-YGEPFPV 429
445667777999***************.****996 PP
== domain 4 score: 31.8 bits; conditional E-value: 2.2e-11
TIGR00398 299 ywPamllale....lklpkqlvahgyltve.gkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtl 391
+w +l l+ + +k l+ +g+++ ++kmSkS gnv++p d+++ gad+lR y + pl+ l s++ + + + +lnR+
MMSYN1_0634 547 FWTHFLYDLGllptNEPFKRLFNQGMILGPdNRKMSKSWGNVINPDDVIDTHGADALRLYEMFMGPLDASLPWSFDGLDASL---------KWLNRCY 635
5777777777533223468899999988644**********************************************99998.........6789999 PP
TIGR00398 392 gfikkyfegklksvkeaseedekllkkieealekidealekfefkkaleeilklvse 448
+i+k+ ++ + +kl ++ ++k+ + +++++f+ a+++++ lv++
MMSYN1_0634 636 RMINKIEF-----SNT---NNHKLDYVYNDVVKKVTQMIQELKFNTAISQLMVLVNA 684
99998765.....333...45677778888888888888999999999999988875 PP
>> TIGR00435 cysS: cysteine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.2 0.0 0.0034 2.2 35 60 .. 46 71 .. 17 74 .. 0.91
2 ? 0.7 0.0 0.081 52 350 380 .. 377 407 .. 348 421 .. 0.75
3 ! 27.0 0.1 8.1e-10 5.2e-07 259 380 .. 574 691 .. 558 744 .. 0.79
Alignments for each domain:
== domain 1 score: 5.2 bits; conditional E-value: 0.0034
TIGR00435 35 sHlGhaRtlvvfDvlrrilqylgYdv 60
+H+Gh + + + Dv r ++ gYdv
MMSYN1_0634 46 LHVGHIKGYTATDVYSRFKRMQGYDV 71
7************************9 PP
== domain 2 score: 0.7 bits; conditional E-value: 0.081
TIGR00435 350 fvEaldddlntaealavlselvkksnlkeis 380
++ ++ +dl+ +al+v+++ v+k nl +++
MMSYN1_0634 377 INSEFLNDLDRVQALQVIHNYVEKNNLGKKK 407
3348999*******************54433 PP
== domain 3 score: 27.0 bits; conditional E-value: 8.1e-10
TIGR00435 259 lkiegeKmSKSlgNfitikdllkkfdpralRll.llsvhyrnqldfseelleeaknalerlakalralkedlasakeiskkksplekefeaefvEald 355
l ++ KmSKS gN+i d+++++ + alRl+ ++ l +s + l+++ + l+r ++ +++++ + + +++k + + ++ ++++ ++
MMSYN1_0634 574 LGPDNRKMSKSWGNVINPDDVIDTHGADALRLYeMFMGPLDASLPWSFDGLDASLKWLNRCYRMINKIEFSNT----NNHKLDYVYNDVVKKVT-QMI 666
45699**************************873677889999****************99999997665554....44556666778888877.899 PP
TIGR00435 356 ddlntaealavlselvkksnlkeis 380
++l++ +a++ l+ lv+ + +e +
MMSYN1_0634 667 QELKFNTAISQLMVLVNAIYKEELN 691
99************99988733333 PP
>> TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.3 0.0 8.1e-05 0.052 30 116 .. 23 112 .. 15 117 .. 0.88
2 ? -3.1 0.0 0.92 5.9e+02 361 385 .. 377 401 .. 365 408 .. 0.84
3 ! 5.6 0.0 0.0021 1.4 270 336 .. 562 628 .. 557 688 .. 0.70
Alignments for each domain:
== domain 1 score: 10.3 bits; conditional E-value: 8.1e-05
TIGR03447 30 eveaeaeaslyvcGitPydat...hlGhaatylafdlvnrvlldaghkvhyvqnvtdvddPlleraerdGvdwrelgeseidlfredmea 116
+ ++++e + y+ + Py + h+Gh y a d+ r + +g +v + P + a ++G d re++ ++i+ f+ +++
MMSYN1_0634 23 KTTNNSENKAYILDMFPYPSGsglHVGHIKGYTATDVYSRFKRMQGYDVLHPIGWDAFGLPAEQYALKTGNDPREFTLQNIENFKVQLNK 112
4566778999********874444**************************9999999999************************988765 PP
== domain 2 score: -3.1 bits; conditional E-value: 0.92
TIGR03447 361 lreeladdldtpaalaavdewaaea 385
+ +e+ +dld +al+ + +++++
MMSYN1_0634 377 INSEFLNDLDRVQALQVIHNYVEKN 401
5677889***********9999875 PP
== domain 3 score: 5.6 bits; conditional E-value: 0.0021
TIGR03447 270 erlarhyvhagmigldGekmskskGnlvlvsklraaGeePaairl.avlaghyredrewtdevlaeae 336
e++ r + ++g d +kmsks Gn++ + + + a+rl ++ g w+ + l+++
MMSYN1_0634 562 EPFKRLFNQGMILGPDNRKMSKSWGNVINPDDVI-DTHGADALRLyEMFMGPLDASLPWSFDGLDASL 628
56666676666779************98665543.333444566534555666666666666665555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (804 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 242 (0.0539216); expected 89.8 (0.02)
Passed bias filter: 115 (0.0256239); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 7 (0.00155971); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 3207.16
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0634 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0636 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0636.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0636/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0636 [L=929]
Description: lipoprotein, putative 1=Unknown Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-211 703.2 117.1 1.4e-211 703.0 117.1 1.0 1 TIGR04547 Mollicu_LP: MOLPALP family lipoprotein
Domain annotation for each model (and alignments):
>> TIGR04547 Mollicu_LP: MOLPALP family lipoprotein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 703.0 117.1 3.1e-215 1.4e-211 1 807 [] 1 923 [. 1 923 [. 0.98
Alignments for each domain:
== domain 1 score: 703.0 bits; conditional E-value: 3.1e-215
TIGR04547 1 MKKlLaiLgalslvasSsl.tvvACtkkek........edkseynnslknlqgiasllAksiILaDqngisldylkntfknkklkdllkklnlklden 89
MKK+LaiL++l+lv+++++ tv++C+k+ + ++k+ +nnsl+n+++i+++l k+++LaD++g+++d+lk++f+nk+l++++k+++l+ +e
MMSYN1_0636 1 MKKILAILSSLTLVSTGVFsTVLSCKKTLTpttkpntnNNKVLKNNSLDNIKTISAMLLKQAVLADMYGYNFDFLKSYFNNKNLNEQAKRYKLN-TEI 97
*******************9999***********************************************************************.*** PP
TIGR04547 90 dksldkkstleellkryFgkdsylkktelddninldgkkgtsngllsevlkegllgtktkkisesiekiLslisglstlllgslfss..lgsllksfi 185
+++++ ++++e++l++yF+++ ++kk+ dn+nldg kgt++++l++vl+++++gt++k+is++i+ iL++isg+ ++ l++l+++ ++s++++f+
MMSYN1_0636 98 KDNITLSTDFEDALANYFSTNLVIKKN---DNVNLDGIKGTDIDFLTSVLPKTVFGTTSKQISAAISIILENISGAGITGLLDLAKNidVNSKFSDFV 192
***************************...******************************************************************** PP
TIGR04547 186 kkdk..telislllkliltnsklietinkfidkidvnkkykdlslenldnallisltngiglilnkkdfkevelstdnd....ikeslkkaskalvds 277
k+ + +eli++ll++i+tn+k++++++++i+k+d+++ ykd++l++l+n +l+++++gi+ il+ kd++ v+++++++ ++++l+++sk+++++
MMSYN1_0636 193 KNLNvsKELITTLLNTIFTNDKFLKELEEEINKFDALTLYKDFELSELSNLALLNILDGINGILD-KDYQLVSSDIKKNngstLNVKLWNTSKTFINK 289
*****************************************************************.***********999****************** PP
TIGR04547 278 iqkkdessnke..............lkdienvlkalaellkalqllqkklslfdetkdveqpkdaenLFsktktNseflkevlkkkteek........ 353
++k+d++sn + +++i++++k++a+l+++l+l+q+ +slfde++++e ++++en+F+k+k+Nsef+k+++k + ++
MMSYN1_0636 290 VAKFDQTSNVStissfsnstsptilPTNIKRNIKTAASLIRGLELFQYLFSLFDESRKDEFKISDENIFDKSKKNSEFIKNIYKINGSTGgsnngsnk 387
********4446899*************************************************************************99******** PP
TIGR04547 354 ........itkqkkssINLKyllsflkyyLgelkkkdkkGynlQKllaiLFg...tekeveyssetknkknakefykskkassgtnllnkiiesllnk 440
+ +++k+++NLKy++++l+yyLg+l +k++k+y+l++++aiLF+ te+++ ++e++n+ n +++yks+++++++++ nki e +ln+
MMSYN1_0636 388 ieslngtsNGSTSKTTLNLKYIIDTLQYYLGNL-DKSDKAYRLRQFIAILFSgkyTENIY--KPENNNNGNGSNEYKSFFFEFNGAPENKIKEIKLNG 482
*********************************.******************75444444..59********************************** PP
TIGR04547 441 elsllveilikslkslkik.........................tkenfkkliksdllvklipsifeslanqgklikdslkkilellk.......... 503
++++l++il++sl+++k++ ++e+f+k+ ++d+l++l++ i++s++++++l++d+++kile+l
MMSYN1_0636 483 FQIFLTSILFESLSNIKLQnikiesgifslakpfiekinlknffESEVFLKKGLADFLISLMNLITDSFVYNQPLVNDNFDKILENLVtilktlkfdd 580
************************************************************************************************** PP
TIGR04547 504 ................klfieevkkiaefllskilekilkkNlfksLYsGdff...............keisklikkl.................... 550
k++ie+++k +e++++ki+e+i+kk++f+ ++ G ++ ++++++++l
MMSYN1_0636 581 llkalfnetngivsslKSLIEKYVK-FEDISKKIDEFIKKKETFSLVKVGIKSfipilgekffeyiydGKVEQTFDTLanlsndvlirtlveklkiqi 677
*************************.999**********************999*****9999999999999999999999***************** PP
TIGR04547 551 ......iekladkiknsvdeifgndkplNlktllttpLdkllekkkedkkqflkglkkkSiteiiddlssdfevdeneklkdle.syginlkdikeLv 641
i ++++ki++s+++if+++++lNlk+l+t++L+++++ e+k++f++++ +kSit+i+++ls+++++++ klkdl+ +yg++++++ke++
MMSYN1_0636 678 paalnfILPYFKKIAMSLRTIFPPNVHLNLKNLFTIKLSDFIK--LENKPNFGSDYLDKSITTILNELSGADGSGS--KLKDLDnAYGFKIDSLKEFI 771
******99***********************************..999****************************..8*****9************* PP
TIGR04547 642 nkifinytykdkeegketklnlislllenpkkaleiLGitkdknkfkegSlldalsnkffnpnknkklvakdtlqelikvlakiiknlniakslkdef 739
nkif +y+yk++ +++ +++nlislll+np+k++ei+G+t++++k +++Sl+d+lsnk++ ++k+kk +d+lq+++ vl+k+i nln++ +++ ++
MMSYN1_0636 772 NKIF-KYDYKWN-GKDLENGNLISLLLNNPNKFKEIIGLTEEGMKKDSKSLIDILSNKLIPNDKSKK---QDSLQWFAGVLNKVIINLNKKPNFTISL 864
****.*******.******************************************************...**************************** PP
TIGR04547 740 neeflnqknwkfeftfskknksnqkksiksqtllvkyknkktnaktkYefkysRdsknskFkfkkitK 807
+++f+n+k+++fef+++k++ks i+sqt++++++n+ kY++ ++Rd+k+s+F ++++tK
MMSYN1_0636 865 EKHFNNDKFNNFEFSETKAEKSGL---ITSQTISTTINNQ------KYTLVITRDPKQSTFIVESLTK 923
************************...************8......********************99 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (929 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 241 (0.0536988); expected 89.8 (0.02)
Passed bias filter: 72 (0.0160428); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.21u 0.53s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 1905.83
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0636 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0637 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0637.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0637/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0637 [L=132]
Description: rpsE 4=Probable Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.5e-24 82.7 0.0 8e-24 82.4 0.0 1.0 1 TIGR03627 uS9_arch: ribosomal protein uS9
Domain annotation for each model (and alignments):
>> TIGR03627 uS9_arch: ribosomal protein uS9
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.4 0.0 1.8e-27 8e-24 5 130 .] 11 132 .] 7 132 .] 0.92
Alignments for each domain:
== domain 1 score: 82.4 bits; conditional E-value: 1.8e-27
TIGR03627 5 sgkrktaiaravireGkGrvrinkvp.velieielarlkilePlllaedvakevDidvkvsGGGimgqaeaartaiarglveftgdkelkdaflayDr 101
+g+rk +ia+ ++ +G+G +++n++p +e ++ + + + Pl +a ++ k+ Di vkv GGG++gqa a+r iar+l++ +++ ++ + D+
MMSYN1_0637 11 TGRRKSSIAQVILTPGSGSITVNGKPaLEFFPYATLVQDLEQPL-VATNTLKDFDIIVKVIGGGFTGQAGATRLGIARALLQA--SEDYRKLLR--DQ 103
89*********************998579***999999999998.68999******************************985..666788776..9* PP
TIGR03627 102 tllvnDvrrkepkklggkgarakrqksYr 130
ll D+r ke+kk+g +gar+ q s r
MMSYN1_0637 104 GLLTRDARIKERKKYGLRGARRAPQYSKR 132
**********************9998866 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (132 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 170 (0.0378788); expected 89.8 (0.02)
Passed bias filter: 153 (0.0340909); expected 89.8 (0.02)
Passed Vit filter: 19 (0.00423351); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 997.67
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0637 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0638 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0638.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0638/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0638 [L=151]
Description: ribosomal protein L13 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-51 171.4 0.7 2.4e-51 171.2 0.7 1.0 1 TIGR01066 rplM_bact: ribosomal protein uL13
4.1e-15 54.4 0.7 7.8e-14 50.2 0.7 2.0 1 TIGR01077 L13_A_E: ribosomal protein uL13
Domain annotation for each model (and alignments):
>> TIGR01066 rplM_bact: ribosomal protein uL13
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 171.2 0.7 1.1e-54 2.4e-51 4 140 .. 6 142 .. 3 143 .. 0.96
Alignments for each domain:
== domain 1 score: 171.2 bits; conditional E-value: 1.1e-54
TIGR01066 4 akeeeeverkwyvvdaagktLGrlasevakllrGkhkatytPnvdvGDyviviNaekvkltgkkleqkvyyrhsgyvgglkektlkellekkpekvle 101
+ +++++++kwy+vda++kt+Grla++va +lrGkhk+++tP+++ GD+vi+iNaek ++gkk+++k+yy+hs ++gglk+++++ e +k+le
MMSYN1_0638 6 MISAKDINKKWYIVDAENKTVGRLATQVALVLRGKHKVDFTPHINNGDHVIIINAEKAIFSGKKESNKFYYHHSMHPGGLKKRSVEVQRELDATKILE 103
444788*********************************************************************************99********* PP
TIGR01066 102 kAvkgmlpknklgrkllkklkvykgsehpheaqkpivld 140
A++ mlpkn g ++ + l+v+kgs+hp++aqkp+vl+
MMSYN1_0638 104 RAIRLMLPKNVQGSNQYRALHVFKGSQHPFAAQKPEVLE 142
************************************997 PP
>> TIGR01077 L13_A_E: ribosomal protein uL13
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 50.2 0.7 3.5e-17 7.8e-14 2 114 .. 18 141 .. 17 147 .. 0.84
Alignments for each domain:
== domain 1 score: 50.2 bits; conditional E-value: 3.5e-17
TIGR01077 2 vidaeglilGrLaskva.......k.....rlLeGekvvvvnaekivisGdkevvvekYkeklekkkktnprrgPffprapdrilkrtvrgmlpkkka 87
++dae + +GrLa++va k ++ +G +v+++naek++ sG+ke ++ Y++ ++ ++++ + + +il+r++r mlpk+
MMSYN1_0638 18 IVDAENKTVGRLATQVAlvlrgkhKvdftpHINNGDHVIIINAEKAIFSGKKESNKFYYHHSMHPGGLKKRSVEVQRELDATKILERAIRLMLPKN-V 114
89**************944444221222223568999***************************999999888889999999************76.6 PP
TIGR01077 88 rGrealerlkvyvGiPkeldkkklvkv 114
+G + ++ l+v++G +++ +k +++
MMSYN1_0638 115 QGSNQYRALHVFKGSQHPFAAQKPEVL 141
8**************999988876665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (151 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 145 (0.0323084); expected 89.8 (0.02)
Passed bias filter: 99 (0.0220588); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1084.21
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0638 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0639 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0639.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0639/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0639 [L=1381]
Description: efflux ABC transporter, permease protein 2=Generic Efflux
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1381 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 474 (0.105615); expected 89.8 (0.02)
Passed bias filter: 70 (0.0155971); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.24
# Mc/sec: 8263.23
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0639 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0640 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0640.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0640/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0640 [L=251]
Description: putative tRNA pseudouridine(38-40) synthase 2=Generic tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-38 130.4 2.9 2.3e-38 130.1 2.9 1.1 1 TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase
0.0076 13.9 0.1 0.016 12.8 0.0 1.8 2 TIGR03936 sam_1_link_chp: radical SAM-linked protein
Domain annotation for each model (and alignments):
>> TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 130.1 2.9 1e-41 2.3e-38 3 209 .. 5 225 .. 3 243 .. 0.88
Alignments for each domain:
== domain 1 score: 130.1 bits; conditional E-value: 1e-41
TIGR00071 3 ialkiaYdGsnyhGmqvqpekktvegelekaLeevgakkkkf.vmsagRTDkGVhAlgqvislkikkeiedkklvaklnallpedirvkalekVnkkF 99
i+l + YdGsnyhG+ q + ++++ l ka+++v + ++f ++a TD VhAl q + l i +k ++++n++lp di++ +++ V+++F
MMSYN1_0640 5 ILLSLCYDGSNYHGWINQTNAISIQTTLNKAIKKVIK-TDQFkTIGASKTDTNVHALDQKVLLIIYFTPILEKFIKAINKALPSDIKILDAKFVDPNF 101
678999******************************9.777779****************************************************** PP
TIGR00071 100 daRfsassrkYryilnnkk............yrsaldlekleaaakellGkhdFsnFtkakd..skeksairtikkikvseseeliilkiiGssFllh 183
++R + Y+y +n ++ +s++d+ kl++ + ++G+h+F+ F+ k+ +++ ++ rti +ikv + ++ +++++++s+F++
MMSYN1_0640 102 NIREVEY-KIYHYYINDHHfdiftnryeyfwKHSKIDIIKLQEIFNLFIGEHEFKLFSGLKEneWNQYQTKRTIDDIKVLRINNKVVIEFKASGFIRY 198
***9888.99999999776789999999874448************************88877799999***************************** PP
TIGR00071 184 qvRkivaalvlvg.reklpveevskll 209
q+R i+a ++++ ++k++ +++ ++l
MMSYN1_0640 199 QIRIIIANCLNAYlNHKISTTKLVEML 225
******988876514555555555554 PP
>> TIGR03936 sam_1_link_chp: radical SAM-linked protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.9 0.0 0.24 5.5e+02 123 147 .. 30 54 .. 11 73 .. 0.66
2 ! 12.8 0.0 7.3e-06 0.016 75 142 .. 75 140 .. 57 193 .. 0.81
Alignments for each domain:
== domain 1 score: -1.9 bits; conditional E-value: 0.24
TIGR03936 123 eeleeaieeflaaeeievekktkkg 147
++l++ai+++ + +++++ +k
MMSYN1_0640 30 TTLNKAIKKVIKTDQFKTIGASKTD 54
5667777777777777766665553 PP
== domain 2 score: 12.8 bits; conditional E-value: 7.3e-06
TIGR03936 75 eevlerLnaalPeglevleveevpdkakslmalveaaeYrvtleleeeeeleeaieeflaaeeievek 142
e++++++n+alP+++++l+++ v+ + + +++ ++Y + + ++ + + ++ e f + ++i + k
MMSYN1_0640 75 EKFIKAINKALPSDIKILDAKFVDPNFNIREVEYKIYHYYI--NDHHFDIFTNRYEYFWKHSKIDIIK 140
799********************965554444555555544..3333366777777776666666655 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (251 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 255 (0.0568182); expected 89.8 (0.02)
Passed bias filter: 82 (0.0182709); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1716.41
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0640 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0641 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0641.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0641/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0641 [L=336]
Description: ecfT 4=Probable Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-19 66.7 20.0 9.2e-14 49.7 0.8 2.7 3 TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component Cbi
Domain annotation for each model (and alignments):
>> TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.9 7.3 3.9e-10 1.7e-06 2 85 .. 19 100 .. 18 114 .. 0.84
2 ! 49.7 0.8 2.1e-17 9.2e-14 88 200 .] 154 277 .. 131 277 .. 0.79
3 ? -3.4 0.2 0.38 1.7e+03 27 39 .. 302 314 .. 293 326 .. 0.48
Alignments for each domain:
== domain 1 score: 25.9 bits; conditional E-value: 3.9e-10
TIGR02454 2 dPrvKlilalallvlavllknllalllllilalllvllakiplrvllkrlavpivFllvvlllllfsigtepgepllslglael 85
dPr Kl+++++l+v +++ l+ l++ +++ l++l++++ + l+++l+ +++++++++l+ +f+i +p + ++++ ++
MMSYN1_0641 19 DPRLKLFMIMVLIVSVFFPIGLTGYLIISGIIIGLFALSQLSFKMLVRLLVPVTFIFAIIVLMNFFFI--HPSSNAVGQISSWV 100
9**********9999999888999999999999**************999999999999999999996..66666666655455 PP
== domain 2 score: 49.7 bits; conditional E-value: 2.1e-17
TIGR02454 88 tkeglaaaltlllRvltsvlavllLalTTp.......ftellsalrrlgvPkllve.illltyRyifvlleelermllAqrsR.lgyrslk..rtlks 174
+++ l+ al + +R+ + ++ + +L+ +Tp + +lls lr ++ P ++ i++++ R+i +l +e++r+++Aq sR + ++ k +++ks
MMSYN1_0641 154 SEKALYSALVMGMRIYLMITLTCILTGSTPslqltlaIEDLLSPLRLIKAPVYILSmIISIALRMIPTLIDEAGRIMKAQASRgIDIKNGKfkDKVKS 251
45567888888899888888888887777722222225667777788888876665167899*********************9665554455***** PP
TIGR02454 175 lgalagalflrsleraervylAmesR 200
l +l+ l++ s+++ae++ +Am +R
MMSYN1_0641 252 LTSLIIPLLVSSFQKAEDLAYAMDAR 277
************************98 PP
== domain 3 score: -3.4 bits; conditional E-value: 0.38
TIGR02454 27 llllilalllvll 39
+l +++a++++++
MMSYN1_0641 302 VLGISFAIFMMVY 314
2222333333333 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (336 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 323 (0.0719697); expected 89.8 (0.02)
Passed bias filter: 107 (0.0238414); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 2412.55
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0641 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0642 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0642.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0642/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0642 [L=303]
Description: ecfA 4=Probable Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.7e-112 371.9 0.6 4.4e-112 371.7 0.6 1.0 1 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
4.2e-77 257.2 0.3 4.9e-77 256.9 0.3 1.0 1 TIGR04520 ECF_ATPase_1: energy-coupling factor transporter A
3.2e-48 162.6 0.3 4.1e-48 162.3 0.3 1.1 1 TIGR01186 proV: glycine betaine/L-proline transport ATP bind
1.3e-47 159.7 0.0 1.9e-47 159.1 0.0 1.2 1 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
1.5e-45 153.5 0.1 2.1e-45 153.0 0.1 1.1 1 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
3.3e-44 149.5 0.0 4.5e-44 149.1 0.0 1.1 1 TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transp
4.7e-44 148.6 0.0 6e-44 148.3 0.0 1.1 1 TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding pr
1.3e-38 130.8 0.0 1.6e-38 130.5 0.0 1.0 1 TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-bindin
3e-37 126.2 0.2 3.7e-37 125.9 0.2 1.1 1 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
3.8e-37 125.7 0.3 5.3e-37 125.2 0.3 1.2 1 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
9.9e-37 124.9 0.0 1.3e-36 124.5 0.0 1.0 1 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
1.6e-36 124.1 0.3 2e-36 123.8 0.3 1.1 1 TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP
4.1e-36 122.6 0.0 5.7e-36 122.2 0.0 1.1 1 TIGR02673 FtsE: cell division ATP-binding protein FtsE
1.2e-35 121.1 0.0 1.6e-35 120.7 0.0 1.0 1 TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-bindi
2.3e-35 120.2 0.0 3e-35 119.8 0.0 1.1 1 TIGR01187 potA: polyamine ABC transporter, ATP-binding prote
6.5e-35 118.5 0.0 9.1e-35 118.0 0.0 1.1 1 TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transport
5.7e-34 115.7 0.0 7.2e-34 115.3 0.0 1.0 1 TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system
2.7e-33 113.3 0.1 9e-33 111.6 0.1 1.7 1 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
1.7e-32 110.9 0.0 2.3e-32 110.4 0.0 1.1 1 TIGR02769 nickel_nikE: nickel import ATP-binding protein Nik
2.2e-32 110.3 0.1 2.9e-32 109.9 0.1 1.2 1 TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-bi
3.9e-32 109.6 0.0 5.2e-32 109.2 0.0 1.1 1 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
4.3e-32 109.3 0.6 5.3e-32 109.0 0.6 1.0 1 TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system
1.7e-31 107.8 0.0 1.9e-31 107.6 0.0 1.0 1 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
6e-31 105.7 0.0 7.4e-31 105.4 0.0 1.1 1 TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit,
1e-30 104.8 0.0 1.5e-30 104.3 0.0 1.2 1 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
2.4e-30 103.7 0.0 3.2e-30 103.3 0.0 1.1 1 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
1.9e-29 101.0 0.5 5.1e-29 99.6 0.5 1.6 1 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
3.1e-29 100.0 0.0 3.5e-29 99.8 0.0 1.0 1 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
4.1e-29 99.6 0.1 5.6e-29 99.2 0.1 1.1 1 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
3.9e-28 96.2 0.0 4.9e-28 95.9 0.0 1.0 1 TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding p
6.9e-27 92.2 0.0 8.8e-27 91.8 0.0 1.1 1 TIGR01288 nodI: nodulation ABC transporter NodI
1.1e-26 91.3 0.0 1.4e-26 90.9 0.0 1.0 1 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
1.5e-26 91.1 1.2 2e-26 90.7 1.2 1.0 1 TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
3.1e-26 90.1 0.4 4.5e-26 89.5 0.4 1.2 1 TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-bi
8.2e-26 88.9 0.1 1.2e-25 88.4 0.1 1.2 1 TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding protei
1.8e-25 87.4 0.0 2.2e-25 87.1 0.0 1.0 1 TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
9.4e-25 85.6 1.6 1.2e-24 85.2 1.6 1.1 1 TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC tran
1.4e-24 84.6 0.0 1.7e-24 84.3 0.0 1.0 1 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
2e-24 83.8 0.0 2.7e-24 83.4 0.0 1.0 1 TIGR00958 3a01208: antigen peptide transporter 2
4.9e-23 80.0 0.0 7.1e-23 79.4 0.0 1.2 1 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
1e-22 78.9 1.7 2.7e-22 77.5 1.7 1.7 1 TIGR03740 galliderm_ABC: lantibiotic protection ABC transpor
3.8e-22 76.2 0.0 4.6e-22 75.9 0.0 1.1 1 TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC trans
8.1e-22 75.7 0.0 2.7e-21 73.9 0.0 1.6 1 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
1.9e-21 74.5 0.0 2.6e-21 74.1 0.0 1.2 1 TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein
4.9e-21 72.8 0.0 6.1e-21 72.5 0.0 1.1 1 TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC trans
3.8e-19 65.1 0.0 4.8e-19 64.7 0.0 1.0 1 TIGR01257 rim_protein: rim ABC transporter
4.2e-19 66.9 0.0 5.5e-19 66.6 0.0 1.1 1 TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein
1.8e-18 64.4 0.1 2.4e-18 64.0 0.1 1.1 1 TIGR01192 chvA: glucan exporter ATP-binding protein
4.3e-18 63.2 0.0 5.5e-18 62.8 0.0 1.1 1 TIGR00955 3a01204: pigment precursor permease
3.8e-17 60.0 0.1 5.2e-17 59.6 0.1 1.0 1 TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
9.2e-17 58.6 0.8 1e-11 41.9 0.1 2.0 2 TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protei
2.8e-16 57.2 0.2 2.9e-10 37.3 0.0 2.1 2 TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD f
6.2e-16 56.6 0.0 9.8e-15 52.7 0.0 2.0 1 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
6.6e-16 56.4 1.3 1.8e-15 55.0 1.3 1.6 1 TIGR01978 sufC: FeS assembly ATPase SufC
1.8e-14 50.9 0.3 1.2e-09 34.9 0.0 2.1 2 TIGR00630 uvra: excinuclease ABC subunit A
4.8e-11 39.0 0.0 5.5e-08 28.8 0.0 2.0 2 TIGR00956 3a01205: pleiotropic drug resistance family protei
9.4e-11 37.8 0.1 2.8e-10 36.3 0.1 1.6 1 TIGR01271 CFTR_protein: cystic fibrosis transmembrane conduc
6.8e-10 35.0 0.0 2.3e-09 33.2 0.0 1.7 1 TIGR00957 MRP_assoc_pro: multi drug resistance-associated pr
0.00091 15.5 0.8 0.0015 14.7 0.8 1.3 1 TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer AT
0.0078 12.1 0.8 0.091 8.6 0.4 2.0 2 TIGR00618 sbcc: exonuclease SbcC
------ inclusion threshold ------
0.042 9.5 0.7 0.33 6.5 0.0 2.0 2 TIGR02168 SMC_prok_B: chromosome segregation protein SMC
Domain annotation for each model (and alignments):
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 371.7 0.6 5.9e-114 4.4e-112 1 278 [. 21 299 .. 21 300 .. 0.99
Alignments for each domain:
== domain 1 score: 371.7 bits; conditional E-value: 5.9e-114
TIGR04521 1 iklknvsyiYqkgtpfekkalkdvsleiekgefvaiiGhtGsGKstliqhlngLlkptsGeveidgleikakkkkkkklkelrkkvglvFQfpekQLF 98
i l+nvsy+Y+k+tpfe kal++ sl+++k++++++iG+tGsGKst+iq+ ngL+ ++G++++ + i a++kk k++k+lrk++glvFQfpe+QLF
MMSYN1_0642 21 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKKIKEVKRLRKEIGLVFQFPEYQLF 118
7799********************************************************************************************** PP
TIGR04521 99 eetvlkdiafgpknlglseeeveervkealelvgldeellerspfeLSGGqkrrvAiagvLamepevLvlDEptaGLDpkgrkellellkklkkekgk 196
+et++kdiafgp nlg +++e+ ++v e+l+lv+l+e++++rspfeLSGGqkrrvA+ag++am+ + LvlDEpt GLDpkg++++++l+++l+ke++k
MMSYN1_0642 119 QETIEKDIAFGPVNLGENKQEAYNKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKK 216
************************************************************************************************** PP
TIGR04521 197 tvilvtHsmedvaeladrvivlkkGkvvldgtpeevfkeeeeleklklelPevlelvkklkkkgle.vkkkvltleelaeeik 278
+i+vtH+m++v+++ad+viv+++Gkv++ g+p e+f++ e l+k++++ P++ +l++klk+kg++ ++kk+ t+e++a+e++
MMSYN1_0642 217 RIIMVTHNMDQVLRIADEVIVMHEGKVIAIGSPFEIFSNMELLTKIEIDPPKLYQLMYKLKNKGIDlLNKKIRTIEDFADELA 299
******************************************************************78999********9986 PP
>> TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 256.9 0.3 6.7e-79 4.9e-77 2 268 .. 22 298 .. 21 299 .. 0.94
Alignments for each domain:
== domain 1 score: 256.9 bits; conditional E-value: 6.7e-79
TIGR04520 2 evenvsfkYee...eekkalkdvsleiekgefvaiiGhNGsGKsTlakllnglllpeegkvlvdgl....etleeenlweirkkvglvfqnPdnqlvg 92
++nvs++Y++ e kal++ sl+ +k++ +++iG+ GsGKsT+ +l ngl+ +e+g+++v ++ +t++ ++++++rk++glvfq P+ ql
MMSYN1_0642 22 ILDNVSYTYAKktpFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYaipaNTKKIKEVKRLRKEIGLVFQFPEYQLFQ 119
579******996655778*********************************************986222257788889999***************** PP
TIGR04520 93 atveedvaFglENlgvpreeikkrveealkkvgl.eefrkkepkkLSGGqkqrvaiagvlalepeiiilDEatsmLDpkgrkevletvkklkkeeklt 189
+t+e+d+aFg+ Nlg +++e ++v e lk v+l e++ k++p +LSGGqk rva+ag++a++ + ++lDE+t LDpkg ++ +++ ++l+ke k+
MMSYN1_0642 120 ETIEKDIAFGPVNLGENKQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKR 217
*********************************9678************************************************************* PP
TIGR04520 190 visitHdleeave.adrvivlekgkivaegtpkeifskkeklkelgldvPfvvelaeelkkkgiel.eeeilteeelveel 268
+i++tH+++++++ ad+viv+++gk++a g+p eifs+ e l+++++d P++++l+ +lk+kgi+l +++i t e++++el
MMSYN1_0642 218 IIMVTHNMDQVLRiADEVIVMHEGKVIAIGSPFEIFSNMELLTKIEIDPPKLYQLMYKLKNKGIDLlNKKIRTIEDFADEL 298
**********9865**************************************************97257788889888877 PP
>> TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 162.3 0.3 5.6e-50 4.1e-48 7 220 .. 39 255 .. 32 259 .. 0.94
Alignments for each domain:
== domain 1 score: 162.3 bits; conditional E-value: 5.6e-50
TIGR01186 7 lgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevr..rkkiamviq..kialfPhmtildnislglellk 100
+++n+ +l ++ + ++iG +GsGkst+++l n li +G+i++ G+ + + ++++ev+ rk i++v+q ++ lf ti ++i++g+ l+
MMSYN1_0642 39 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIV-GDYAIPANTKKIKEVKrlRKEIGLVFQfpEYQLF-QETIEKDIAFGPVNLG 134
789****************************************977.666667788889999844699*****95567777.57************** PP
TIGR01186 101 ideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlg 197
++qe +k e+lklv+l e+y++r P elsGG+++rv la +a++ + l++de+ + ldP +++ + + +l+k+++k i+++th++d+ lr++
MMSYN1_0642 135 ENKQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIA 232
*******************999**************************************************************************** PP
TIGR01186 198 drivilkaGeivqvGtPdeilrn 220
d ++++++G+++ +G+P ei+ n
MMSYN1_0642 233 DEVIVMHEGKVIAIGSPFEIFSN 255
********************998 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 159.1 0.0 2.6e-49 1.9e-47 5 188 .. 38 226 .. 35 228 .. 0.93
Alignments for each domain:
== domain 1 score: 159.1 bits; conditional E-value: 2.6e-49
TIGR01166 5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrk...gllelrkkvalvlqdpddqlfaadvdedvafgplnlGl 99
++l++ +l++++ +v++++G+ G+Gkst+++ nGl+ ++G+++++ ++ + k ++ +lrk+++lv+q p+ qlf+ ++++d+afgp+nlG
MMSYN1_0642 38 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKkikEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 135
57899*******************************************999977765111566789******************************** PP
TIGR01166 100 seaeverrvrealaavdi.sgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeG.ktvvisthdvd 188
+++e+ ++v e l++v++ +++ +r lsgG+k+rva+ag++a+ + l+ldePt gldp+G+e +++++++l++e k +++ th++d
MMSYN1_0642 136 NKQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYkKRIIMVTHNMD 226
*****************9678******************************************************9875168******998 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 153.0 0.1 2.8e-47 2.1e-45 13 234 .. 37 256 .. 21 261 .. 0.88
Alignments for each domain:
== domain 1 score: 153.0 bits; conditional E-value: 2.8e-47
TIGR00972 13 ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdi...ydkkldvvelrkkvGmvfqkp..npfpmsiydnvayg 105
e++al++ +l +kknkvt++iG +G+Gkst+++ n l +G++++ + i ++k +v++lrk++G+vfq p + f+ +i +++a+g
MMSYN1_0642 37 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE-----TGQIIVGDYAIpanTKKIKEVKRLRKEIGLVFQFPeyQLFQETIEKDIAFG 129
578******************************999987555.....67777777766221344567889**********762268************ PP
TIGR00972 106 lrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkyt..ivivth 201
+ g ++k+e + v e Lk + l +d +k+s+++LsGGq++r+++a +a++ + l+lDePt LDp+ e +l + L+k+y i++vth
MMSYN1_0642 130 PVNLG-ENKQEAYNKVPELLKLVQLP---EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKkrIIMVTH 223
99888.89999999***********9...6899******************************************************98544****** PP
TIGR00972 202 nmqqaarvsdktaffleGelveegeteqifekp 234
nm+q r++d++++++eG+++ g++ +if++
MMSYN1_0642 224 NMDQVLRIADEVIVMHEGKVIAIGSPFEIFSNM 256
******************************985 PP
>> TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 149.1 0.0 6.1e-46 4.5e-44 12 225 .. 33 255 .. 22 259 .. 0.90
Alignments for each domain:
== domain 1 score: 149.1 bits; conditional E-value: 6.1e-46
TIGR03265 12 kefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillgg.......rditrlppqkrdyGivfq..sYaLfPnltvaeniayG 100
k+ +f+al++ sl+ kk+ + c++G G Gk+t++++ GL +++G+i++g+ ++i ++ +++ G+vfq Y Lf + t++++ia+G
MMSYN1_0642 33 KTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDyaipantKKIKEVKRLRKEIGLVFQfpEYQLFQE-TIEKDIAFG 129
444589*******************************************998662222112666677777889*****9777****76.9******** PP
TIGR03265 101 LknkklkreevaerveelLelvglsgse.ekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqee 197
n + +++e+ ++v elL+lv+l++ ++ P lsGGq++rvaLa +a+ + L+LDeP LD k e + + +++l ++ + imvth+ +
MMSYN1_0642 130 PVNLGENKQEAYNKVPELLKLVQLPEDYvKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ 227
************************97651668****************************************************************** PP
TIGR03265 198 alslaDrivvmnkgkieqvgtPeeiYeq 225
l +aD ++vm +gk+ +g+P ei+++
MMSYN1_0642 228 VLRIADEVIVMHEGKVIAIGSPFEIFSN 255
*************************976 PP
>> TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 148.3 0.0 8.1e-46 6e-44 7 221 .. 32 255 .. 21 260 .. 0.91
Alignments for each domain:
== domain 1 score: 148.3 bits; conditional E-value: 8.1e-46
TIGR00968 7 skrfGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrill.......eGrdvtrvkvrdreiGfvfq..hyalfkhltvrdniaf 95
+k +f+al++ +l+ k+ ++++++G +GsGkst++++ Gl ++G+i++ + + + +vk ++eiG+vfq +y lf+ t++++iaf
MMSYN1_0642 32 KKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVgdyaipaNTKKIKEVKRLRKEIGLVFQfpEYQLFQE-TIEKDIAF 128
4444579*******************************************99733333335566777788889*****99667****97.9******* PP
TIGR00968 96 Gleirkkdkakikakveellelvql.eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqe 192
G ++k++ +kv ell+lvql e++ +r p +lsGGq++rvala +a++ + l+ldep g ld k +++ + + +l +e k ++vth+ +
MMSYN1_0642 129 GPVNLGENKQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD 226
*999999******************6689********************************************************************* PP
TIGR00968 193 ealevadrivvlekGkieqvgsaeevyde 221
+ l +ad+++v+++Gk++ +gs+ e++ +
MMSYN1_0642 227 QVLRIADEVIVMHEGKVIAIGSPFEIFSN 255
*************************9976 PP
>> TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 130.5 0.0 2.2e-40 1.6e-38 5 232 .. 24 256 .. 20 265 .. 0.88
Alignments for each domain:
== domain 1 score: 130.5 bits; conditional E-value: 2.2e-40
TIGR02314 5 ekiskvfdqgd.kkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdl..ttlsnaelvkarrqigmifqhfnl.lssrt 98
+++s + + + ++kal+n sl k ++ vig++g+gkst+i+ n l g++iv + t + e+ + r++ig++fq + l t
MMSYN1_0642 24 DNVSYTYAKKTpFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIpaNTKKIKEVKRLRKEIGLVFQFPEYqLFQET 121
5566555444314789*********************************************887762245666788899*********8654267899 PP
TIGR02314 99 vfgnval.plelentpkekikrkvtellalvglsdk.kdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlglti 194
+ +++a+ p++l +++k++ +kv ell lv l + + p +lsggqk+rva+a +a + l+ de t ldp + ++l+ +n++ + i
MMSYN1_0642 122 IEKDIAFgPVNL-GENKQEAYNKVPELLKLVQLPEDyVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRI 218
******857777.567888999***********86526788********************************************************* PP
TIGR02314 195 llithemdvvkricdevavidkgeliekgtvseifshp 232
+++th+md v ri dev v+++g++i g+ eifs+
MMSYN1_0642 219 IMVTHNMDQVLRIADEVIVMHEGKVIAIGSPFEIFSNM 256
************************************85 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.9 0.2 5e-39 3.7e-37 451 691 .. 6 255 .. 1 258 [. 0.88
Alignments for each domain:
== domain 1 score: 125.9 bits; conditional E-value: 5e-39
TIGR03375 451 eeekrllsreklkGeielknvsfkYpeeek...aaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdi....rqid.padlr 540
++ ++ l+ +++ +i l+nvs++Y +++ +aL+n+sl+ k +iG++GsGKst+ +l gl+ + G++++ + i ++i+ ++ lr
MMSYN1_0642 6 KKTNQNLKDIDFSKDIILDNVSYTYAKKTPfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIpantKKIKeVKRLR 103
566788999999*************888654449***********99999******************************9865333266651578** PP
TIGR03375 541 rnigyvpq..dvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDn 636
++ig+v q + +Lf+ t+ ia+g ++ +++ + ++ + ++v+ + ++ + +LSgGQ++ vala ++ +d + l+LDEPt lD
MMSYN1_0642 104 KEIGLVFQfpEYQLFQETIEKDIAFGPVNLGENKQEAYNKVPELLKLVQLP----EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 197
********77789*****************999988888888888888764....346889999********************************** PP
TIGR03375 637 sseekllerLkella..dkTlvlvtHrt.slLelvdriivldkGrivadGpkdevlea 691
+ ee++++ +++l + +k +++vtH + ++L+++d +iv+ +G+++a G+ e++++
MMSYN1_0642 198 KGEEDFINLFERLNKeyKKRIIMVTHNMdQVLRIADEVIVMHEGKVIAIGSPFEIFSN 255
********999999888899******9857********************98888765 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.2 0.3 7.2e-39 5.3e-37 5 205 .. 27 237 .. 23 238 .. 0.89
Alignments for each domain:
== domain 1 score: 125.2 bits; conditional E-value: 7.2e-39
TIGR03608 5 skkfkdk.....eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkeka.klkskkaskllreklgylFq..nfaLlenetve 94
s ++ +k + l+++sl+++k +++ ++G+ GsGKst++ + l ++g++i+ + + + k+ k+ k lr+++g +Fq +++L +et+e
MMSYN1_0642 27 SYTYAKKtpfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPaNTKKIKEVKRLRKEIGLVFQfpEYQLF-QETIE 123
55555555555589********************************************9988651455667778889******997789998.68*** PP
TIGR03608 95 enlelalklkkkskkekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkee.gktiiiv 190
+ + + ++ ++k+e +k+ e+l+ v+l e + k+ +elsgG+k Rvala i+ + + ++ DEPtg LD+k +e ++l++ l++e k ii+v
MMSYN1_0642 124 KDIAFGPVNLGENKQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMV 221
******************************999******************************************************9983578**** PP
TIGR03608 191 tHdp.evaekadrvie 205
tH++ +v + ad+vi
MMSYN1_0642 222 THNMdQVLRIADEVIV 237
***8468999999996 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 124.5 0.0 1.8e-38 1.3e-36 17 226 .. 45 259 .. 36 278 .. 0.89
Alignments for each domain:
== domain 1 score: 124.5 bits; conditional E-value: 1.8e-38
TIGR02142 17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppe.kRrvgyvFq..eArLFpHlsvrenLrYGlkraraeerris 111
+l+ + + vt + G+ GsGk+++i+l GL+ ++g+i + + + +kki ++++g vFq e +LF ++ +++ +G + ++ +
MMSYN1_0642 45 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKKIKEVKRlRKEIGLVFQfpEYQLFQE-TIEKDIAFGPVNLGENK-QEA 140
56778899*************************************9999999865541778*****9778899975.899******98876655.677 PP
TIGR02142 112 eekvielLgiehL....leRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvl 205
+kv elL + +L ++R p +LsGG k Rva++ + + + L++DeP LD k ++ + erl++e k i++v H++d v+r+ad+v+v+
MMSYN1_0642 141 YNKVPELLKLVQLpedyVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVM 238
8889888888555444499******************************************************************************* PP
TIGR02142 206 edGrvkaagkleevlaskdls 226
++G+v a+g++ e+ ++ +l
MMSYN1_0642 239 HEGKVIAIGSPFEIFSNMELL 259
**************9998775 PP
>> TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 123.8 0.3 2.8e-38 2e-36 5 239 .. 37 281 .. 32 301 .. 0.84
Alignments for each domain:
== domain 1 score: 123.8 bits; conditional E-value: 2.8e-38
TIGR01188 5 efkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDv......vrepdevRrsigvvpqkasvdedL.tarenlellgelyg 95
efkA+++ +l ++++v ++G G GK+t+i++ +l+ + G+ +v y + ++e +++R++ig+v+q + t ++++ + +g
MMSYN1_0642 37 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIpantkkIKEVKRLRKEIGLVFQFPEYQLFQeTIEKDIAFGPVNLG 134
79*************************************************996665556777789*********8877765514555566655668* PP
TIGR01188 96 lpkkeaeeraeellelvelkea.adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkla 191
+k+ea +++ ell+lv+l e ++ ++sgG++rr+ la + + + l LDEPt GLDp+ + +l e l+ke ++ i++ th+++++ ++a
MMSYN1_0642 135 ENKQEAYNKVPELLKLVQLPEDyVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMDQVLRIA 232
*******************76516777889*************9***********************************9****************** PP
TIGR01188 192 drvaiidkGkiiaedtpeeLKervgk.evveverrdikelkkevsllaa 239
d+v+++++Gk+ia+++p e+ ++++ + +e+ + ++ +l + + + +
MMSYN1_0642 233 DEVIVMHEGKVIAIGSPFEIFSNMELlTKIEIDPPKLYQLMYKLKNKGI 281
*****************99987665313345555555555544444444 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 122.2 0.0 7.7e-38 5.7e-36 4 214 .] 23 242 .. 21 242 .. 0.90
Alignments for each domain:
== domain 1 score: 122.2 bits; conditional E-value: 7.7e-38
TIGR02673 4 lekvskeyaa....gveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedv..arlrerelpllRrkigvvfq..Dfkllkd 93
l++vs +ya+ +++aL++ sl+++k +++ ++G+ G+Gk+t+++l g + G++ v ++ ++ + +e+ lR++ig+vfq +++l++
MMSYN1_0642 23 LDNVSYTYAKktpfEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIpaNTKKIKEVKRLRKEIGLVFQfpEYQLFQ- 119
77888888751222579*********************************************99987335566789*************77788775. PP
TIGR02673 94 rtvlenvalalevrgkkeeeiqkrveevlelvgl.edkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkr.Gtt 189
t+ +++a+ g++++e ++v e+l+lv l ed +k p elsgG + Rva+a i + + l+ DePtG lD++ +e+ ++l+++lnk+
MMSYN1_0642 120 ETIEKDIAFGPVNLGENKQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKR 217
69*******9999999999***************44678999*************************************************9862578 PP
TIGR02673 190 vivathdeelvervkkrvlelekgk 214
+i++th+ + v r++ v+ +++gk
MMSYN1_0642 218 IIMVTHNMDQVLRIADEVIVMHEGK 242
********************99985 PP
>> TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 120.7 0.0 2.2e-37 1.6e-35 40 255 .. 41 255 .. 32 258 .. 0.92
Alignments for each domain:
== domain 1 score: 120.7 bits; conditional E-value: 2.2e-37
TIGR03415 40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfq..kfallPWrtveenvafGlelsG 135
+++sl+ ++ ++ ++G +GsGks++++ ngl G++ v d + + + +++++lr+ ++ +vfq ++ l+ t+e+++afG G
MMSYN1_0642 41 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYA--IPANTKKIKEVKRLRK-EIGLVFQfpEYQLF-QETIEKDIAFGPVNLG 134
689********************************999***9997665..555555667899**96.69****94445554.689********9999* PP
TIGR03415 136 vakaerrkrveeqlelvgl.aeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklG 232
k+e ++v e l+lv+l +++ ++ + elsGG ++rv la +a++ + l++deP ldP + + + + +l k+ kk i++v+h++d+ l++
MMSYN1_0642 135 ENKQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIA 232
*******************56799*******************************************99999999*********************** PP
TIGR03415 233 nriaimegGrivqlgtpeeivlk 255
+++ +m++G+++ +g+p ei +
MMSYN1_0642 233 DEVIVMHEGKVIAIGSPFEIFSN 255
*******************9865 PP
>> TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 119.8 0.0 4.1e-37 3e-35 2 191 .. 57 255 .. 56 259 .. 0.93
Alignments for each domain:
== domain 1 score: 119.8 bits; conditional E-value: 4.1e-37
TIGR01187 2 LGpsGsGkttlLrllaGleeldsGkilldg.......edvtevpaekrsvnvvfq..syaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvql 90
+G++GsGk+t+++l Gl ++G+i++++ +++ ev ++++++vfq +y Lf t+e+++afg +++k+e ++v e+L+lvql
MMSYN1_0642 57 IGTTGSGKSTMIQLTNGLIISETGQIIVGDyaipantKKIKEVKRLRKEIGLVFQfpEYQLFQ-ETIEKDIAFGPVNLGENKQEAYNKVPELLKLVQL 153
79*************************986222222256788889999******9778****7.59******************************** PP
TIGR01187 91 .eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepee 187
e++ kr p +lsGGq++rvala ++ + L+lDep + LD k + + +++l+++ +++vth+ + l ++d + v+++Gk++ ig+p e
MMSYN1_0642 154 pEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIAIGSPFE 251
6789********************************************************************************************** PP
TIGR01187 188 iyee 191
i+++
MMSYN1_0642 252 IFSN 255
*986 PP
>> TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 118.0 0.0 1.2e-36 9.1e-35 12 237 .. 37 255 .. 26 260 .. 0.91
Alignments for each domain:
== domain 1 score: 118.0 bits; conditional E-value: 1.2e-36
TIGR03005 12 eltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfq..sfnlfphktvldn 107
e++ l++ +l+ ++ + +iG +GsGkst++++ l + G+i v g+ + k+ k ++++r++iG+vfq +++lf +t+ ++
MMSYN1_0642 37 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIV-GDYAIPAN--TKKI-----KEVKRLRKEIGLVFQfpEYQLFQ-ETIEKD 125
68999999****9999999********************99*****99.77555444..4445.....899***********955588885.688999 PP
TIGR03005 108 vteapvlvkGvaraeaekravelldmvGla.dkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvt 204
++ pv+ +G ++ ea ++ ell++v l d + p +lsGGqk+rva+a +a+ + l++de+t ldp+ e+ +n++ rl +e + +++vt
MMSYN1_0642 126 IAFGPVN-LGENKQEAYNKVPELLKLVQLPeDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVT 222
*****97.799******************636789*************************************************************** PP
TIGR03005 205 hemgfarefadrvlffdkGkiveeGkpdeifrk 237
h+m +ad v+ ++ Gk++ G p eif +
MMSYN1_0642 223 HNMDQVLRIADEVIVMHEGKVIAIGSPFEIFSN 255
*******************************87 PP
>> TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 115.3 0.0 9.8e-36 7.2e-34 9 228 .. 21 253 .. 16 257 .. 0.88
Alignments for each domain:
== domain 1 score: 115.3 bits; conditional E-value: 9.8e-36
TIGR03258 9 vvleslrvaygarv.....vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdl.......thlppykrnlallvq..nyalf 92
+ l++++ +y ++ l++ sl+ + ++ ++G +GsGk+t++++ G++ ++ G+++v+d + + +++++l++q +y lf
MMSYN1_0642 21 IILDNVSYTYAKKTpfefkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIpantkkiKEVKRLRKEIGLVFQfpEYQLF 118
667777777777663333368999*****************************************975522211004455566799***99667**** PP
TIGR03258 93 phlkveenvafGlrarkqskaliaervadalklvql.sdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelp 189
++e+++afG +k + ++v + lklvql d+ +r p +lsGGq++rvala ++++ + l+ldep ld + ++ + +++l +e
MMSYN1_0642 119 QE-TIEKDIAFGPVNLGENKQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK 215
76.89*******************************569*******************************************************9987 PP
TIGR03258 190 eltvlyvthdrdealvladkillmkeGslialGetraly 228
+ +++vth+ d+ l +ad + +m+eG++ia G + +++
MMSYN1_0642 216 K-RIIMVTHNMDQVLRIADEVIVMHEGKVIAIGSPFEIF 253
6.7899***************************998776 PP
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 111.6 0.1 1.2e-34 9e-33 12 233 .. 35 252 .. 21 262 .. 0.86
Alignments for each domain:
== domain 1 score: 111.6 bits; conditional E-value: 1.2e-34
TIGR02315 12 pngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklk..kkelrklrkkigmifq..eynlierltvlenvLsgrl 105
p + +al+n++l++kk +++ viG+ G+Gkst+++ n+l+ ++ g+i + ++ + + ke+++lrk+ig++fq ey+l + t+ +++ g +
MMSYN1_0642 35 PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTkkIKEVKRLRKEIGLVFQfpEYQLFQ-ETIEKDIAFGPV 131
334589*************************************************7654236899***********966677664.355566666655 PP
TIGR02315 106 gakstlksllglfseedkekAlelLervglaelaakrad.qLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivn 202
+ lg ++e ++k elL+ v+l e + kr+ +LsGGq+ Rva+a +a + + ++ DEP+ LDpk + ++l+ r+nke + +i+
MMSYN1_0642 132 N--------LGENKQEAYNKVPELLKLVQLPEDYVKRSPfELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMV 221
5........55566777888899********9999998659********************************************************* PP
TIGR02315 203 lHqvdlakkyadrivglkageivfdgassel 233
H++d + + ad ++ +++g+++ g++ e+
MMSYN1_0642 222 THNMDQVLRIADEVIVMHEGKVIAIGSPFEI 252
**********************998888776 PP
>> TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.4 0.0 3.2e-34 2.3e-32 25 230 .. 39 244 .. 21 257 .. 0.87
Alignments for each domain:
== domain 1 score: 110.4 bits; conditional E-value: 3.2e-34
TIGR02769 25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGq..dlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhlts 120
+ l+n sl+ ++ + ++G++G+Gkst+ +l Gl + G++ + + k+ k++r+++ lvfq + ++++++ i+ +l +
MMSYN1_0642 39 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYaiPANTKKIKEVKRLRKEIGLVFQFPEYQL-FQETIEKDIAFGPVNLGE 135
579*****************************************986541155566778999***********877666.577888777754445544 PP
TIGR02769 121 ldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfa 218
++ e +++ ell+lv+l+++ +++ P +lsGGq +r+++a +a++ + +vlde ld ++l+++l++e ++++th++ v ++a
MMSYN1_0642 136 -NKQEAYNKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIA 232
.45566789***************************************************************************************** PP
TIGR02769 219 qrvlvldeGqiv 230
++v+v++eG+++
MMSYN1_0642 233 DEVIVMHEGKVI 244
**********98 PP
>> TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.9 0.1 4e-34 2.9e-32 6 219 .. 25 243 .. 21 245 .. 0.86
Alignments for each domain:
== domain 1 score: 109.9 bits; conditional E-value: 4e-34
TIGR02211 6 nltksykeg.kleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssn..eraklrnkklGfiyqfh.hlladft 99
n++ +y ++ +e + l++ sl +k +++ ++G++GsGkst++ l gl + +G++++ + + +++ e +lr k++G+++qf + l + t
MMSYN1_0642 25 NVSYTYAKKtPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKKikEVKRLR-KEIGLVFQFPeYQLFQET 121
67777765415899*********************************************98888876554411444555.78*******624577778 PP
TIGR02211 100 alenvamPlliskkskkeakerakellekvgl.ekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntall 196
+ ++a+ + ++k+ea ++ ell+ v+l e+ +++ p elsGG+++rva+a + + + ++ dePtg ld k + + +l+++lnke++ ++
MMSYN1_0642 122 IEKDIAFGPVNLGENKQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRII 219
888999966666678899**************55678899********************************************************** PP
TIGR02211 197 vvthdle.lakkldrvlelkdgkl 219
+vth+++ + + +d+v+ +++gk+
MMSYN1_0642 220 MVTHNMDqVLRIADEVIVMHEGKV 243
*****861556678999***9997 PP
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.2 0.0 7.1e-34 5.2e-32 5 219 .. 24 243 .. 21 244 .. 0.88
Alignments for each domain:
== domain 1 score: 109.2 bits; conditional E-value: 7.1e-34
TIGR02982 5 relnhyygkge.lrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgase..kelvqvrrkiGyifq..ahnllesl 97
++++ y k + + + l++ +l+ +++ + + G++GsGk t++ l gl G++ v + + ++ ke++++r++iG++fq ++ l++
MMSYN1_0642 24 DNVSYTYAKKTpFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKkiKEVKRLRKEIGLVFQfpEYQLFQE- 120
56666666543267789********************************************99987554441268999*********9555777775. PP
TIGR02982 98 taeqnvrma.lelkeklsakeakakaeelleavgl.eerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgt 193
t e+++ ++ ++l e+ ++ea +k+ ell+ v l e+ +++ p +lsgGqk+rva+a ++ + ++ dePt ld k ++ ++l+++l +e
MMSYN1_0642 121 TIEKDIAFGpVNLGEN--KQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKK 216
8889998863788888..999*************945578999******************************************************* PP
TIGR02982 194 tillvthd.nrildvadrivkmedGkl 219
i++vth+ +++l +ad ++ m +Gk+
MMSYN1_0642 217 RIIMVTHNmDQVLRIADEVIVMHEGKV 243
*******9458**************97 PP
>> TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.0 0.6 7.2e-34 5.3e-32 267 519 .. 9 256 .. 1 264 [. 0.91
Alignments for each domain:
== domain 1 score: 109.0 bits; conditional E-value: 7.2e-34
TIGR03269 267 vekekevevgediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrak 364
++ k+++ +dii + +vs y ka++n sl+ k++++ ++Gt+G+Gk+t+ ++ G++ +G++ vGd + k+++e r +
MMSYN1_0642 9 NQNLKDIDFSKDII-LDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQI--IVGDYAIPANTKKIKEVKRLR 103
33468999999999.89********9999****************************************999986..58******************* PP
TIGR03269 365 kyiGllhq..eyalyphrtvlenlteaiglelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdp 460
k iGl++q ey+l+ + ++l ++ a k lk v + e++ ++ p els G++ rvala ++ + + ++ldeptG +dp
MMSYN1_0642 104 KEIGLVFQfpEYQLFQETIEKDIAFGPVNLGENKQEAYNKVPELLKLVQLPEDYV----KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 197
******99889****876555666678999999999*************999875....699************************************ PP
TIGR03269 461 itkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeiveel 519
+ + + + +e ++ ++v+h+md vl + d + +m +Gk++ iG+p ei +++
MMSYN1_0642 198 KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIAIGSPFEIFSNM 256
*******************************************************9876 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 107.6 0.0 2.5e-33 1.9e-31 316 529 .] 14 238 .. 1 238 [. 0.80
Alignments for each domain:
== domain 1 score: 107.6 bits; conditional E-value: 2.5e-33
TIGR02857 316 aaass.slelenvsvayegrk....palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldad.....swrkqiawvpQ 403
+ ++s + l+nvs++y ++ +al++ slt++ +++ ++G+ G+GKst+++l g++ + G+i v++ ++ + +++ +rk+i+ v Q
MMSYN1_0642 14 DIDFSkDIILDNVSYTYAKKTpfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKKikevkRLRKEIGLVFQ 111
22222489*********6654243569********************************************77655443333333337899******* PP
TIGR02857 404 kP..llfegtvaenirlarkdaseaevkealera.gldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevl 498
P +lf++t+ ++i+++ + e+ +ea +++ +l +l +lp e + +++ +LSgGq++R+aLA +++ d + l+lDEPt LD++ e++++
MMSYN1_0642 112 FPeyQLFQETIEKDIAFGPVNLGEN-KQEAYNKVpELLKL-VQLP---EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI 204
99667************98888777.56666666255554.4577...55699********************************************* PP
TIGR02857 499 ealrela..egrtvllvaHrl.alaeladkivvl 529
+ +++l ++ +++v+H+ ++++ ad+++v+
MMSYN1_0642 205 NLFERLNkeYKKRIIMVTHNMdQVLRIADEVIVM 238
*****9944468899****862677889999986 PP
>> TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 105.4 0.0 1e-32 7.4e-31 4 223 .. 23 256 .. 20 263 .. 0.88
Alignments for each domain:
== domain 1 score: 105.4 bits; conditional E-value: 1e-32
TIGR03864 4 veglsfaygkr.....ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkea......larlGvvfqqstlDl.dl 89
++++s++y+k+ +al++ slt +k +++ ++G G+Gkst+++l +L+ +++g+i v + + +++k++ +++G+vfq + l +
MMSYN1_0642 23 LDNVSYTYAKKtpfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKKIkevkrlRKEIGLVFQFPEYQLfQE 120
578999999884444469******************************************99887776554433221221468******999887478 PP
TIGR03864 90 sveqnlryhaaLhGlsraeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsv 186
++e+++ + G ++ea +++ e+l+ ++l e ++ eL+GG++rrv +a + + + L+lDe+t GLD++ ++ ++ ++l +e + +
MMSYN1_0642 121 TIEKDIAFGPVNLGENKQEAYNKVPELLKLVQLPEDYVKRsPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRI 218
***********9*********************9887766368******************************************************* PP
TIGR03864 187 LWathlvdev.eaedrlvvlhkGkvlaqGaaaelaaea 223
+ th +d v + +d+++v+h+Gkv a G++ e+ +++
MMSYN1_0642 219 IMVTHNMDQVlRIADEVIVMHEGKVIAIGSPFEIFSNM 256
********984679****************99998765 PP
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 104.3 0.0 2e-32 1.5e-30 3 216 .. 42 255 .. 40 263 .. 0.91
Alignments for each domain:
== domain 1 score: 104.3 bits; conditional E-value: 2e-32
TIGR02770 3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltk.tsG..eilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkaleklsk 97
++ +l+ k++kv+ ++G GsGks+ + + gl+ +e+ + G i + k++++++ +ei+l++q P + ti++ + l++ ++
MMSYN1_0642 42 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQiIVGdyAIPANTKKIKEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQ 138
6789*********************9999999877665441345124667888899999999**********97764.479999999999999***** PP
TIGR02770 98 qakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaelade 195
+a +++ e l+ v+L+ e +k pfelsGG Rv +a ++++ l+ DePt lD + + +++l+e+l+++ i+++th++ v ++ade
MMSYN1_0642 139 EAYNKVPELLKLVQLP--EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADE 234
***************9..899***************************************************************************** PP
TIGR02770 196 vavmekGkivergtvkelfqe 216
v+vm++Gk++ g++ e+f++
MMSYN1_0642 235 VIVMHEGKVIAIGSPFEIFSN 255
*******************87 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 103.3 0.0 4.4e-32 3.2e-30 2 209 .. 22 245 .. 21 248 .. 0.84
Alignments for each domain:
== domain 1 score: 103.3 bits; conditional E-value: 4.4e-32
TIGR01277 2 klddviyey.khlplef......dlsveaGervailGesGaGkstllnliaGflepasGeikvnd.......kdhtrsapyerpvsmlfq..ennlfa 83
ld+v y y k+ p+ef +l+ ++ + ++G +G+Gkst+++l G++ +G+i v d k+ ++ ++ + ++fq e lf
MMSYN1_0642 22 ILDNVSYTYaKKTPFEFkalnntSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDyaipantKKIKEVKRLRKEIGLVFQfpEYQLFQ 119
6999999984567999954444457888999999**************************99977222211134445556677899998877899997 PP
TIGR01277 84 hltvrqniglGlkpglklnavqkekvedvarqvGi.adylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkl 180
t++++i++G + + +kv ++ + v + +dy++r p elsGGq++rvala + + l+ldep ldpk e+ + l ++l +e k+
MMSYN1_0642 120 E-TIEKDIAFGPVNLGENKQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKK 216
6.9*******9544334445556788888888988679************************************************************ PP
TIGR01277 181 tlllvthslsdaaaiasqvvvvedGkikv 209
+++vth+++++ +ia++v+v+++Gk+
MMSYN1_0642 217 RIIMVTHNMDQVLRIADEVIVMHEGKVIA 245
**************************965 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 99.6 0.5 7e-31 5.1e-29 15 229 .. 38 252 .. 29 261 .. 0.85
Alignments for each domain:
== domain 1 score: 99.6 bits; conditional E-value: 7e-31
TIGR03411 15 fkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk....dltklkeaeiarlGigRkfqkpsvfe.eltvlenlelalkadks 107
fkaln+ sl+ +++++ ++iG G+Gk+t++ + G + +++G++++ + + +k+ke + r+ ig fq p+ + t+ ++d
MMSYN1_0642 38 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYaipaNTKKIKEVKRLRKEIGLVFQFPEYQLfQETI--------EKDIA 127
9**********************************************99733335678999999**********98632202233........33333 PP
TIGR03411 108 vlallfarlskeekerieevleligLee.kadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelake..rsvvvvehDm 202
+ + + ++e+ +++ e+l+l++L e +++ +Ls Gqk ++ ++ +++ + + l+lDeP+ G+ + +e +l+++l+ke + +++v h+m
MMSYN1_0642 128 FGPVNLGENKQEAYNKVPELLKLVQLPEdYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEykKRIIMVTHNM 225
33444567889999************66157788899**********************************************9853378******** PP
TIGR03411 203 efvrelaekvtvlheGkvlaeGsldev 229
+ v ++a++v v+heGkv+a Gs e+
MMSYN1_0642 226 DQVLRIADEVIVMHEGKVIAIGSPFEI 252
********************9986555 PP
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 99.8 0.0 4.8e-31 3.5e-29 325 570 .. 8 261 .. 1 264 [. 0.85
Alignments for each domain:
== domain 1 score: 99.8 bits; conditional E-value: 4.8e-31
TIGR02204 325 aqpkalpakvrgeiefeevkfayParp..dqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlrel.....dpeelrer 415
++++ + + +i +++v+++y +++ + kal++ +lt ++ ++ ++G +G+Gkst+++l + G+i ++ + + + + lr++
MMSYN1_0642 8 TNQNLKDIDFSKDIILDNVSYTYAKKTpfEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANtkkikEVKRLRKE 105
5555566778899***********99755889*********************************************99888654111124578**** PP
TIGR02204 416 lalvpq..dsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaes 511
+ lv q + +lf + ++++i++G ++ +++ ea k e ++ +lpe y + +LsGGqk+r+a+a i d + L+Lde t Ld +
MMSYN1_0642 106 IGLVFQfpEYQLFQETIEKDIAFGPVNLGENKQEAYNKVPELLKL-VQLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKG 199
******44558****************999887766666665554.5799887...567899************************************ PP
TIGR02204 512 eqlvqqaleelmkg..rttlviahrLatvlk.adrivvldkGriveqGthaeLiakggLyar 570
e+ + +e+l k+ + +++ h + vl+ ad ++v+ +G+++++G+ e++ + +L +
MMSYN1_0642 200 EEDFINLFERLNKEykKRIIMVTHNMDQVLRiADEVIVMHEGKVIAIGSPFEIFSNMELLTK 261
**********9986336677889***9998659****************9999999998776 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 99.2 0.1 7.6e-31 5.6e-29 14 215 .. 39 248 .. 23 258 .. 0.88
Alignments for each domain:
== domain 1 score: 99.2 bits; conditional E-value: 7.6e-31
TIGR03410 14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegedi....tklkpeervkaGiayvpqGre.ifpkltveenlelglealkkk 106
++l++ sl+ +k++v++v+G+ g Gk+t+++ gl+ ++G+i + + i +k k +r ++ i+ v q e + + t+e ++ g +l ++
MMSYN1_0642 39 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIpantKKIKEVKRLRKEIGLVFQFPEyQLFQETIEKDIAFGPVNLGEN 136
68999*****************************************9987733325677889***********765246678*********9999999 PP
TIGR03410 107 ekkipeeiyelFPvl...kemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladr 201
+++ +++ el ++ ++ kR +LsGGq+ +a+a ++++ + l+LDePt G+ P ++ + ++l+ke + i++v +++d +l++ad+
MMSYN1_0642 137 KQEAYNKVPELLKLVqlpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADE 234
888887776666554222799***************************************************************************** PP
TIGR03410 202 ylvlerGevvaege 215
++v+++G+v+a g+
MMSYN1_0642 235 VIVMHEGKVIAIGS 248
*********98775 PP
>> TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 95.9 0.0 6.7e-30 4.9e-28 331 557 .. 20 254 .. 5 263 .. 0.86
Alignments for each domain:
== domain 1 score: 95.9 bits; conditional E-value: 6.7e-30
TIGR02203 331 kvefrnvtfrypgd...drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdl....adl.kLasLRrqvalvsq..dvvL 418
++ + nv+++y ++ + +al++ sl+ ++ +v+ ++G GsGkst+++l + ++G+i++ + ++ +++ +++ LR+++ lv q + L
MMSYN1_0642 20 DIILDNVSYTYAKKtpfEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIpantKKIkEVKRLRKEIGLVFQfpEYQL 117
6778999****87644479***********************************************9998432222324789*********977899* PP
TIGR02203 419 FddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerl 516
F++ti +++a+g ++ e++ e+ + l +lv+ lpe v + +LsGGq+ R+a+a + d L+LDe t LD e + erl
MMSYN1_0642 118 FQETIEKDIAFGPV-NLGENKQEAYNKVPELLKLVQ-LPE---DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 210
************99.888888888888899999995.665...45778999*********************************************** PP
TIGR02203 517 mkg..RttlviahRLsti.ekaDrivvlddGkiverGtheeLla 557
k+ + +++ h + + + aD+++v+ +Gk++ G+ e+++
MMSYN1_0642 211 NKEykKRIIMVTHNMDQVlRIADEVIVMHEGKVIAIGSPFEIFS 254
987334567889*99865378*************9998777665 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 91.8 0.0 1.2e-28 8.8e-27 9 234 .. 25 264 .. 18 281 .. 0.81
Alignments for each domain:
== domain 1 score: 91.8 bits; conditional E-value: 1.2e-28
TIGR01288 9 gvsksygdkv.....vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpar......arlarakigvvpqfdnldreftvr 95
+vs +y +k +n+ s+t + ++ ++g g+gkst+ +l gli ++g+i v + +pa+ ++ r +ig+v qf + ++ +
MMSYN1_0642 25 NVSYTYAKKTpfefkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANtkkikeVKRLRKEIGLVFQFPEYQLFQETI 122
55555555542222257899999******************************************9972222223456889**********9988889 PP
TIGR01288 96 enllvfgr.yfglstreieevipsllefarl.eskadvrvadlsggmkrrltlaralindpqllildepttgldpharhl...iwerlrsllargkti 188
e+ + fg +g + +e + +p ll++ +l e + +lsgg krr++la+ + d + l+ldept gldp+ ++erl k i
MMSYN1_0642 123 EKDIAFGPvNLGENKQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDfinLFERLNK--EYKKRI 218
9999999625889999999***********945556666789*********************************987641114566654..56789* PP
TIGR01288 189 lltthlmeeaerlcdrlcvleagrkiaegrpdalideqigcdviei 234
++ th m++ r+ d + v+ +g+ ia g p + + iei
MMSYN1_0642 219 IMVTHNMDQVLRIADEVIVMHEGKVIAIGSPFEIFSNMELLTKIEI 264
*******************************888776655555665 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.9 0.0 2e-28 1.4e-26 452 680 .. 17 254 .. 3 263 .. 0.86
Alignments for each domain:
== domain 1 score: 90.9 bits; conditional E-value: 2e-28
TIGR01846 452 lkGaiefenirfrykedsp...evlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdl.....aladPawlrrqvgvvlq..e 539
+ +i ++n+ + y++ +p + l+n sl k+ +v ++G++GsGkst+ +l l + e+G+++v + + + + + lr+++g+v+q e
MMSYN1_0642 17 FSKDIILDNVSYTYAKKTPfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIpantkKIKEVKRLRKEIGLVFQfpE 114
5568999**********9965568999*****************************************98877322223567789*********9889 PP
TIGR01846 540 nvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlr 637
lf+ +i ++ia + ++ e+k a k+ +++ +l++ y v+ +lsGGq++r+ala + + l+lde t ld + e+ + ++
MMSYN1_0642 115 YQLFQETIEKDIAFGPVNLGENKQEAYNKVPELLKLV-QLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFE 208
9*********************999999998877754.678777...788999************************************999888877 PP
TIGR01846 638 eickg..rtviiiahrlstv.raadrilvlekGkivesGkheella 680
++ k+ + +i+++h ++ v r ad+++v+++Gk++ G+ e+++
MMSYN1_0642 209 RLNKEykKRIIMVTHNMDQVlRIADEVIVMHEGKVIAIGSPFEIFS 254
7776433669999**99864399*************9998766665 PP
>> TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.7 1.2 2.7e-28 2e-26 465 694 .. 12 251 .. 2 261 .. 0.80
Alignments for each domain:
== domain 1 score: 90.7 bits; conditional E-value: 2.7e-28
TIGR01193 465 telenlngdievndvsysyG....ygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngksl....kdidk.helrqlinyl 553
+ di +++vsy y + ++l++ sl+ kkn++++++G +GsGkst+++l ++ +e G+i +++ + k+i++ ++lr+ i +
MMSYN1_0642 12 LKDIDFSKDIILDNVSYTYAkktpFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIpantKKIKEvKRLRKEIGLV 109
344566789**********744457789*********************************************98877322244533267******** PP
TIGR01193 554 PqeP..fifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekk 649
q P +f+ +i +++ +g n+ +++ ++ ++ e+ + + +lp y + +++sgGqk+r+ala + d + l+lde t ld e+
MMSYN1_0642 110 FQFPeyQLFQETIEKDIAFGPV-NLGENKQEAYNKVPELLK-LVQLPEDYV---KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED 202
**885469*****999998864.455555555555666554.456787775...55689**************************************9 PP
TIGR01193 650 ivenllklk...dktiifvahrl.svakksdkiivldeGkiieqGshke 694
++ + +l+ +k ii+v+h + +v + +d++iv++eGk+i Gs e
MMSYN1_0642 203 FINLFERLNkeyKKRIIMVTHNMdQVLRIADEVIVMHEGKVIAIGSPFE 251
987655554222799*******9458899*************9998655 PP
>> TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 89.5 0.4 6.2e-28 4.5e-26 15 227 .. 39 257 .. 21 262 .. 0.82
Alignments for each domain:
== domain 1 score: 89.5 bits; conditional E-value: 6.2e-28
TIGR04406 15 kvvkdvslevksgeivGllGPnGaGkttsfymivGlvkadaGkvllddeditk..lplh..e..rarlGigylpqeasifrkltveenlka.vlelre 105
k +++ sl+ k++++ ++G G+Gk+t ++ Gl+ +++G++ + d i + ++ + r +G+ + e +f++ t+e+++ ++l e
MMSYN1_0642 39 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPAntKKIKevKrlRKEIGLVFQFPEYQLFQE-TIEKDIAFgPVNLGE 135
57899*******************************************9885411334312412445566666669999*98.666666541566666 PP
TIGR04406 106 dldkeereekleelleeleiah.lrekkaaslsGGerrrveiaralaaePkfilldePfagvdPiavsdikklikll.kergiGvlitdhnvretldi 201
+k+e +k+ ell+ +++ + +++ +lsGG++rrv +a +a++ + ++ldeP g+dP +d +l + l ke +++ hn+ ++l i
MMSYN1_0642 136 --NKQEAYNKVPELLKLVQLPEdYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLnKEYKKRIIMVTHNMDQVLRI 231
..5999999**********96526677789********************************************99934567889999********** PP
TIGR04406 202 vdrayivseGkvlaeGsaeeivanek 227
+d+ +++eGkv+a Gs+ ei +n +
MMSYN1_0642 232 ADEVIVMHEGKVIAIGSPFEIFSNME 257
*********************99865 PP
>> TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.4 0.1 1.7e-27 1.2e-25 1 206 [. 41 256 .. 41 280 .. 0.82
Alignments for each domain:
== domain 1 score: 88.4 bits; conditional E-value: 1.7e-27
TIGR01184 1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavil.......egkeitep...gpdrmvvfq..nysllpwltvrenialavdavlrdl 86
l++ +l+ kk + ++ig +g gkst+++l gl +g +i+ + k+i+e + +vfq +y l+ t+ ++ia+ v+
MMSYN1_0642 41 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVgdyaipaNTKKIKEVkrlRKEIGLVFQfpEYQLFQ-ETIEKDIAF--GPVNLGE 135
67899******************************99999988733333334455555400045556788844687775.678888765..6788889 PP
TIGR01184 87 skserreiveehielvglreaadk.rpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsd 183
+k+e + v e ++lv+l e k p +lsgg k+rva+a +++ + l+ldep g ld e++ + + ++ +e + ++mvth++d+ l ++d
MMSYN1_0642 136 NKQEAYNKVPELLKLVQLPEDYVKrSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIAD 233
999999************9876551689******************************************999************************* PP
TIGR01184 184 rvvmltngpaakigeilevpler 206
v+++ +g ig +e+ +
MMSYN1_0642 234 EVIVMHEGKVIAIGSPFEIFSNM 256
**************988885554 PP
>> TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 87.1 0.0 3e-27 2.2e-25 315 542 .. 19 254 .. 2 256 .. 0.85
Alignments for each domain:
== domain 1 score: 87.1 bits; conditional E-value: 3e-27
TIGR01842 315 gelevenvslvppeekk...ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadl....kq.wdretlGksiGYlPq..dve 402
+ + ++nvs++ +++ k l++ s++ k+ ++ +iG+ gsGks++ +l G + ++G++ + +++ k+ + ++l k+iG + q + +
MMSYN1_0642 19 KDIILDNVSYTYAKKTPfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIpantKKiKEVKRLRKEIGLVFQfpEYQ 116
5677888888777765555589******************************************9988877332222135678*******99977899 PP
TIGR01842 403 LfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkel 500
Lf+ t++++ia n+ ++k + k+ + l+ +lp+ Y + + +LsgGq+ R+aLa + d +vLDeP LD +Ge +++ +++l
MMSYN1_0642 117 LFQETIEKDIAFGPVNLGENKQEAYNKVPELLKLV-QLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 210
***********888888888887778888877776.688877...888999*********************************************99 PP
TIGR01842 501 kar.kitvvvithrp.sllelvdkilvlkdGalkafGereevlk 542
++ k ++++th + ++l+++d+++v+++G++ a G+ e+ +
MMSYN1_0642 211 NKEyKKRIIMVTHNMdQVLRIADEVIVMHEGKVIAIGSPFEIFS 254
765377889999987379******************99877765 PP
>> TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 85.2 1.6 1.7e-26 1.2e-24 14 219 .. 37 252 .. 20 291 .. 0.79
Alignments for each domain:
== domain 1 score: 85.2 bits; conditional E-value: 1.7e-26
TIGR03522 14 kqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslev......rkniGyl...PehnPlyldlyvreylefsaal 102
+ kal++ s++ +k +++ +G G+Gkst++++ g + +++G + v ++ + n++++ rk iG + Pe+ l+ + + + ++f
MMSYN1_0642 37 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKKIkevkrlRKEIGLVfqfPEYQ-LFQET-IEKDIAFGPVN 132
3489********************************************99887655544311121167899752225553.66665.45557888887 PP
TIGR03522 103 yklkgrklkkrveelielvGlkaeqhkkig.alskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakd..ktvilsthimqevea 197
+ ++++ ++v el++lv l ++ k+ +ls G ++rv la + d + l+ldePt GldP + ++ +++ k+ k +i+ th m +v
MMSYN1_0642 133 LGENKQEAYNKVPELLKLVQLPEDYVKRSPfELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEykKRIIMVTHNMDQVLR 230
8888899999**********987766665349*********************************************99855599************* PP
TIGR03522 198 lcdrviiinkGkivadkkleel 219
+ d+vi++++Gk++a + e+
MMSYN1_0642 231 IADEVIVMHEGKVIAIGSPFEI 252
*************997665444 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.3 0.0 2.3e-26 1.7e-24 333 529 .. 19 224 .. 2 225 .. 0.78
Alignments for each domain:
== domain 1 score: 84.3 bits; conditional E-value: 2.3e-26
TIGR02868 333 ptlelrdlsvsypgaee....vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslse.....sevrrvvsvlaqda..H 419
++ l ++s+ y ++ + +l++ sl+ ++ + + v+G +G+GKst+++l gl+ +++G++ + ++++ + ++ + +r+ + ++ q +
MMSYN1_0642 19 KDIILDNVSYTYAKKTPfefkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKkikevKRLRKEIGLVFQFPeyQ 116
46778899999988764333589999******************************************8764432211112568899*9999966337 PP
TIGR02868 420 lFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.. 515
lF+ t+ + + ++ + ++ +a + +L ++++ p+ ++ lSGG+++R+alA ++ d + l+LDEPt +LD++ ee+ ++
MMSYN1_0642 117 LFQETIEKDIAFGPVNLGENKQEAYNKVPELLKLVQL-PE---DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFErl 210
*************988755444444333445554443.43...48999*******************************************9988743 PP
TIGR02868 516 aaeegrtvvlvthr 529
+ e ++++++vth+
MMSYN1_0642 211 NKEYKKRIIMVTHN 224
5555666******8 PP
>> TIGR00958 3a01208: antigen peptide transporter 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 83.4 0.0 3.6e-26 2.7e-24 480 705 .. 22 257 .. 7 262 .. 0.85
Alignments for each domain:
== domain 1 score: 83.4 bits; conditional E-value: 3.6e-26
TIGR00958 480 eFqdVsFsYPsrp..dkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkey.....dhkylhrkvalVgqEP..vlfs 568
+Vs++Y ++ + + l++ ++t + +v++++G GsGKSt++ l + l ++Gq+++ + + + k l+++++lV q P +lf+
MMSYN1_0642 22 ILDNVSYTYAKKTpfEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANtkkikEVKRLRKEIGLVFQFPeyQLFQ 119
5679*****9987346789********************************************99888543111236789**********76558*** PP
TIGR00958 569 gsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksa 662
++ + ia+G + +++ a k + + +l+++y v lsgGqk r+A+A + + L+LDe t LD + +l+++ +++
MMSYN1_0642 120 ETIEKDIAFGPVNLGENKQEAYNKVPELLKLV-QLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPkgeeDFINLFERLNKE 213
***********999999999999998888876.588888...7889999*********************************4444444566779999 PP
TIGR00958 663 ksrtvlliahrLstv.ekadkilvlkkgsvvelGthkqLmeked 705
+++ +++++h + v + ad+++v+++g+v G ++ ++ +
MMSYN1_0642 214 YKKRIIMVTHNMDQVlRIADEVIVMHEGKVIAIGSPFEIFSNME 257
************7652779************9998777766655 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 79.4 0.0 9.7e-25 7.1e-23 5 203 .. 50 256 .. 46 271 .. 0.80
Alignments for each domain:
== domain 1 score: 79.4 bits; conditional E-value: 9.7e-25
TIGR03771 5 kGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpq.rhefawdfpidveqtvlsG..ragliGl..lrrpkkadfaavada 97
k ++ +++G G+Gk+t+++ gli ++ G++ v+ + ++i v + r+e f +q + + G+ l +k++ + v +
MMSYN1_0642 50 KNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKKIKEVKRlRKEIGLVFQFPEYQLFQETieKDIAFGPvnLGENKQEAYNKVPEL 147
66778899***************************99887777777877764477765444443333333330023334442267889999******* PP
TIGR03771 98 lervklte.ladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelage.gtailmtthdlaeavatcdrvvll.ngrvva 192
l+ v+l e +r+ elsGGq++rv +a +a++ + l+ldep Gld +e +++lfe l +e ++ i+m+th++ + + ++d v+++ +g+v+a
MMSYN1_0642 148 LKLVQLPEdYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMDQVLRIADEVIVMhEGKVIA 245
******653789999************************************************9983578****************98766379**** PP
TIGR03771 193 dgapdqlqdaa 203
g+p ++
MMSYN1_0642 246 IGSPFEIFSNM 256
****8876554 PP
>> TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 77.5 1.7 3.7e-24 2.7e-22 13 203 .. 38 244 .. 22 260 .. 0.78
Alignments for each domain:
== domain 1 score: 77.5 bits; conditional E-value: 3.7e-24
TIGR03740 13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrew..tr......kdl.kkiGsliesPalye..nltarenlkvrtlllg 99
+++nn sl+ kkn+v ++G G+Gkst+++l Gl+ ++G+i++ + + + k l k+iG + + P y+ + t ++++ ++lg
MMSYN1_0642 38 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIpaNTkkikevKRLrKEIGLVFQFPE-YQlfQETIEKDIAFGPVNLG 134
4689*****************************************99765431122011111233256887777775.43113366667777766666 PP
TIGR03740 100 lpes....rieevlkivdlent.ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpek.Gitvilsshilsevella 191
+++ ++ e+lk+v+l ++ k+ ++s G k+r+ +a + + + l+ldePt GldP G +++ +l + ++++ +i+ +h + +v +a
MMSYN1_0642 135 ENKQeaynKVPELLKLVQLPEDyVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMDQVLRIA 232
655422227899*******776156667899***********99999***************************998872567999************ PP
TIGR03740 192 dhiGiiseGklk 203
d++ +++eGk+
MMSYN1_0642 233 DEVIVMHEGKVI 244
*********985 PP
>> TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.9 0.0 6.3e-24 4.6e-22 472 694 .. 15 248 .. 1 259 [. 0.79
Alignments for each domain:
== domain 1 score: 75.9 bits; conditional E-value: 6.3e-24
TIGR03796 472 ekLsGkvelrnvtfgysal...eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgk....preeipr.evlanslalvdq. 560
s + l+nv+++y++ e + +++ sl+ k+ + ++G+ GsGkst+ +l Gl + +G+i++ + + ++i++ + l++ + lv q
MMSYN1_0642 15 IDFSKDIILDNVSYTYAKKtpfEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYaipaNTKKIKEvKRLRKEIGLVFQf 112
56777899********87612256899*****************************************997641211345554336799999***998 PP
TIGR03796 561 .divlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaiden 657
+ +lf+ t+ ++++ + e++ + k + +++++p++y ++ + lsGGq+ R+ +A ++ + L+lDE t LD++ E+ +
MMSYN1_0642 113 pEYQLFQETIEKDIAFGPVNLGENKQEAYNKVPELL-KLVQLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL 206
899************988888887765555555554.455677777...788999*************************************987655 PP
TIGR03796 658 lrrRg....ctciivaHRLsti.RdcdeiivlerGkvverGt 694
+ r + +i+v+H + + R +de+iv+ +Gkv+ G+
MMSYN1_0642 207 FERLNkeykKRIIMVTHNMDQVlRIADEVIVMHEGKVIAIGS 248
54433111156899*****86449**************9887 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 73.9 0.0 3.7e-23 2.7e-21 18 227 .. 42 255 .. 37 263 .. 0.84
Alignments for each domain:
== domain 1 score: 73.9 bits; conditional E-value: 3.7e-23
TIGR03873 18 ddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagad....lkalsrrarar.rvalveqdsdaev.plsvrdvvalGriPhrslfaa 109
++ +t+ + ++t ++G GsGkst+++l Gl+ +++G++ ++ k ++ +r r ++ lv q + ++ + ++ + +a+G + ++
MMSYN1_0642 42 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAipanTKKIKEVKRLRkEIGLVFQFPEYQLfQETIEKDIAFGPV----NLGE 135
5667889999*******************************7665551111444554455442689999987766526678888999976....5788 PP
TIGR03873 110 dsdedaevvdralarvel.ssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaae.gvtvvvalhdlnlaasvcd 205
+ +e + v ++l v+l +++ +r+ lsGG+++rv la +a + + l+ldePt ld + + ++l l +e + +++ h+++ +++d
MMSYN1_0642 136 NKQEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMDQVLRIAD 233
8889999999****9998578***************************************************999855267788899*********** PP
TIGR03873 206 hvvvldgGrvvaaGppaevltp 227
+v+v+++G+v+a G+p e++
MMSYN1_0642 234 EVIVMHEGKVIAIGSPFEIFSN 255
****************999764 PP
>> TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 74.1 0.0 3.5e-23 2.6e-21 12 209 .. 29 225 .. 21 240 .. 0.83
Alignments for each domain:
== domain 1 score: 74.1 bits; conditional E-value: 3.5e-23
TIGR02324 12 ilhqqgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqf..LrviPRvsa 107
+ ++ + ++l++ sl+ ++ ++++++G++G+Gkst+++ + e+g+i+v + + + +ev +R k+ig v qf +
MMSYN1_0642 29 TYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDY--AIPANTKKIKEVKRLR-KEIGLVFQFpeYQLFQETIE 123
44556668899*******************************************99773..3434555556666666.89*******43345566666 PP
TIGR02324 108 levvaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikea.kargaalig 204
+++ p+ lG +++ea++k+ ell+ +++pe + +P sGG k+Rv +a + +d L+LdePt Ld + + ++l +++ k+ +i
MMSYN1_0642 124 KDIAFGPVN-LGENKQEAYNKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLnKEYKKRIIM 220
788888865.6*******************************************************************99999998862445667777 PP
TIGR02324 205 ifhde 209
+ h+
MMSYN1_0642 221 VTHNM 225
77764 PP
>> TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.5 0.0 8.3e-23 6.1e-21 446 673 .. 15 254 .. 1 262 [. 0.85
Alignments for each domain:
== domain 1 score: 72.5 bits; conditional E-value: 8.3e-23
TIGR03797 446 gkLsGaievdrvtFrYekdgp...lvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdl....ekl.dvqavRrqlGvVLQ. 534
+ s +i +d+v+++Y+k +p + L++ sl+ ++ + ++G+ GsGKSt+++l g e+G+++ + + +k+ +v+++R+ +G V+Q
MMSYN1_0642 15 IDFSKDIILDNVSYTYAKKTPfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIpantKKIkEVKRLRKEIGLVFQf 112
55677999***********98444689999**************************************9876665322244437899**********6 PP
TIGR03797 535 .ngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesl 631
+ +l+ ++i + ia g + ++ +ea +++ + ++P +++ + lSGGQ+ R+ +A ++ + l++DE T LD + + ++ +
MMSYN1_0642 113 pEYQLFQETIEKDIAFGPVNLGENKQEAYNKVPELLKLVQLPE---DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLF 207
6789***********9999888889999999988888999996...589******************************************9999999 PP
TIGR03797 632 eklkv...tRiv.iAHRLSTi.rnadrilvleeGrvveqGsyeeLla 673
e+l+ Ri+ + H + + r ad ++v++eG+v+ Gs e+ +
MMSYN1_0642 208 ERLNKeykKRIImVTHNMDQVlRIADEVIVMHEGKVIAIGSPFEIFS 254
988752225765389***987367****************9877665 PP
>> TIGR01257 rim_protein: rim ABC transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.7 0.0 6.5e-21 4.8e-19 942 1145 .. 37 250 .. 24 260 .. 0.86
Alignments for each domain:
== domain 1 score: 64.7 bits; conditional E-value: 6.5e-21
TIGR01257 942 grpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldav......rqslgmcpqh.nilfhhltvaehilfyaql 1030
a++ +tf +n++t+++g g+gk+t + + gl+ +g ++vg i +n + r+ +g++ q + + + t+ + i f
MMSYN1_0642 37 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKKIkevkrlRKEIGLVFQFpEYQLFQETIEKDIAFGPVN 132
556888899*****************************************99988765431112227899999887334556779999*****999 PP
TIGR01257 1031 kgrsweeaqlemeamledtglhhkrne.eaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll..lkyrsgrtiimsthhmdea 1123
g+ ++ea ++ +l+ l + +lsgg +r++++a + d + +vldept g+dp +l+ l+ + iim th md+
MMSYN1_0642 133 LGENKQEAYNKVPELLKLVQLPEDYVKrSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFerLNKEYKKRIIMVTHNMDQV 228
9*****************99987665415679************9999********************99999973344556789*********** PP
TIGR01257 1124 dllgdriaiisqgrlycsgtpl 1145
+ d + ++ +g++ + g+p+
MMSYN1_0642 229 LRIADEVIVMHEGKVIAIGSPF 250
*****************99996 PP
>> TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 66.6 0.0 7.5e-21 5.5e-19 25 220 .. 49 247 .. 23 256 .. 0.88
Alignments for each domain:
== domain 1 score: 66.6 bits; conditional E-value: 7.5e-21
TIGR02323 25 ypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGkira 122
+v +++G +GsGkst+++ + +++++G++ + + ++ e +r r e Glv q p + + +i+ ++ +g+ + ++
MMSYN1_0642 49 KKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKKIKEVKRL---RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYNK 143
55789*********************************************9986...9***********87788889999**9*******99999999 PP
TIGR02323 123 aakwlekveidaari..kpaafsGGmqqrlqiarnlvtr.prlvfmeptGGl.vsvqarll.llrglvrelglaviivth.lavarllaqrllvmkqG 214
+ l+ v+++++ + p ++sGG ++r+ +a + lv+ eptGGl + ++ l +l +e + +i+vth + + +a+ ++vm++G
MMSYN1_0642 144 VPELLKLVQLPEDYVkrSPFELSGGQKRRVALAGIIAMDgNTLVLDEPTGGLdPKGEEDFInLFERLNKEYKKRIIMVTHnMDQVLRIADEVIVMHEG 241
999*******999886679999***********9987651568888******8667777887******************99888889********** PP
TIGR02323 215 rvvesG 220
+v+ G
MMSYN1_0642 242 KVIAIG 247
**9877 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.0 0.1 3.2e-20 2.4e-18 333 556 .. 19 252 .. 2 262 .. 0.80
Alignments for each domain:
== domain 1 score: 64.0 bits; conditional E-value: 3.2e-20
TIGR01192 333 gavefrdisfefanss....qgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtr.....eslrksiatvfq..dag 419
++ + ++s+ +a + + + + s++ k + ++g tg+gk+t+i+l + + ++gqi++ i + t+ + lrk i vfq +
MMSYN1_0642 19 KDIILDNVSYTYAKKTpfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKkikevKRLRKEIGLVFQfpEYQ 116
5667788888888764333378999*****************************************99988877762322357*********965678 PP
TIGR01192 420 llnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidal 517
l++ +i ++i +g + +++ + k + k ++ + v +lsgg+++r+a+a i + lvlde t ld + e + + l
MMSYN1_0642 117 LFQETIEKDIAFGPVNLGENKQEAYNKVPE----LLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 210
*************99887766544444433....44455555666888899*********************************************** PP
TIGR01192 518 rknrtt..fiiahrlstv.readlvlfldqgrliekgsfdel 556
+k+ ++++h + v r ad v+ + +g++i gs e+
MMSYN1_0642 211 NKEYKKriIMVTHNMDQVlRIADEVIVMHEGKVIAIGSPFEI 252
998654115568999765499***************995554 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 62.8 0.0 7.5e-20 5.5e-18 20 267 .. 19 268 .. 2 273 .. 0.79
Alignments for each domain:
== domain 1 score: 62.8 bits; conditional E-value: 7.5e-20
TIGR00955 20 kkllvkrleealarkk.pekellknvsGvaksGellAvlGsSGaGKtTLlnalafr..sekglkvsgd..vllnGekvea.kemraisayvqqd.dlf 110
k++ ++ ++ ++a+k e + l+n s ++k+ ++ v+G+ G+GK+T+++ se+g + gd + n +k+++ k +r+ + v q+ +
MMSYN1_0642 19 KDIILDNVSYTYAKKTpFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLiiSETGQIIVGDyaIPANTKKIKEvKRLRKEIGLVFQFpEYQ 116
55556666666666664467899*************************998776542256666666885677799998643889999****9975677 PP
TIGR00955 111 iptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkv 208
+ + t++ ++ f + l + +k+e ++v e+l+ ++L + d + +p + lSgG+++R+ala + d L++DEPT GLD +++
MMSYN1_0642 117 LFQETIEKDIAFG-PVNLGE--NKQEAYNKVPELLKLVQLPE--DYVKRSPFE---LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL 206
7788999999995.699999..58899999999999999975..555555564...****************************************** PP
TIGR00955 209 Lkklaqkgkt.viltiHQPsselfelfdkiillaeGrvvylGspeea...vkffselglpcPe 267
+++l ++ k +i++ H ++ ++ d++i++ eG+v+ Gsp e +++++++ + P+
MMSYN1_0642 207 FERLNKEYKKrIIMVTH-NMDQVLRIADEVIVMHEGKVIAIGSPFEIfsnMELLTKIEIDPPK 268
****9986551666666.5789*********************98751114455555555555 PP
>> TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.6 0.1 7e-19 5.2e-17 333 548 .. 18 244 .. 3 247 .. 0.81
Alignments for each domain:
== domain 1 score: 59.6 bits; conditional E-value: 7e-19
TIGR01194 333 svdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrd.....dyrdlfsav..fad 423
s + l +v y+y + e al l+ ++ ++ ++G G Gkst+i+l Gl i + G++++ a+ ++++ r+ v f +
MMSYN1_0642 18 SK-DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKKikevkRLRKEIGLVfqFPE 114
44.46799*******99999999**************************************************9999853311134555555544679 PP
TIGR01194 424 yylfddlvqpdekkqas...ldqattylsrleledkvkved.lnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdl. 516
y lf++ ++ d + ++ + y + el + v++ + + +ls Gq++r+al + l+lde + dp f + l+ l
MMSYN1_0642 115 YQLFQETIEKDIAFGPVnlgENKQEAYNKVPELLKLVQLPEdYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFIN-LFERLn 211
*********99876553111455567888889999999854144445789**********************************9998875.555551 PP
TIGR01194 517 krrGktilvishd.dryfeladrlikladGkvv 548
k k i++++h+ d+ +++ad++i + +Gkv+
MMSYN1_0642 212 KEYKKRIIMVTHNmDQVLRIADEVIVMHEGKVI 244
556788999***879****************98 PP
>> TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.8 0.1 2.3e-05 0.0017 13 101 .. 37 128 .. 28 164 .. 0.64
2 ! 41.9 0.1 1.4e-13 1e-11 403 483 .. 164 245 .. 161 247 .. 0.94
Alignments for each domain:
== domain 1 score: 14.8 bits; conditional E-value: 2.3e-05
TIGR02633 13 gvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelka..ssirdter..kGiviihq..eltlvkelsvlenifl 101
+ kal+n +l+ + ++ + G G+Gkst++++ g+ G+i+ + + a ++i++ +r k i ++ q e l +e ++ ++i +
MMSYN1_0642 37 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE--TGQIIVGDYAIPAntKKIKEVKRlrKEIGLVFQfpEYQLFQE-TIEKDIAF 128
689*******************************99987654..466766665554411455555432234444433226666655.34445555 PP
== domain 2 score: 41.9 bits; conditional E-value: 1.4e-13
TIGR02633 403 rlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeG.vaiivvsselaevlGlsdrvlvigeGklka 483
+lsGG++++ la ++ ++ + l+ldept G+d + +l ++l +e ii+v+ ++ +vl ++d v+v++eGk+ a
MMSYN1_0642 164 ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYkKRIIMVTHNMDQVLRIADEVIVMHEGKVIA 245
69*********************************************99862579************************965 PP
>> TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.1 0.2 2.7e-06 0.0002 337 383 .. 40 86 .. 3 109 .. 0.76
2 ! 37.3 0.0 3.9e-12 2.9e-10 160 238 .. 163 245 .. 118 257 .. 0.83
Alignments for each domain:
== domain 1 score: 18.1 bits; conditional E-value: 2.7e-06
TIGR03719 337 liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGe 383
+++ s++ k+ + viG+ G+Gkst+++l g +++G++ +G+
MMSYN1_0642 40 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGD 86
34677888888888889999999999999988888888888888887 PP
== domain 2 score: 37.3 bits; conditional E-value: 3.9e-12
TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhlda....esvaWlekflkeykGtvvavthdryfldnvaeWileldrGegip 238
+lsGG+krrval+ ++ + + l+ldePt ld + ++ +e+ keyk +++vth+ + +a+ ++ + G+ i+
MMSYN1_0642 163 FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPkgeeDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIA 245
479*******************************63322458999*****************999889999999898888876 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.7 0.0 1.3e-16 9.8e-15 16 186 .. 41 224 .. 36 234 .. 0.76
Alignments for each domain:
== domain 1 score: 52.7 bits; conditional E-value: 1.3e-16
TIGR01189 16 leglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeL........salEnLkfyaallq... 102
l++ s++++ ++ v G G+GK+t++ + GL+ +e+G++ + d ++ ++++ +e++ l + gl + +++ ++ f l+
MMSYN1_0642 41 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQIIVGDYAIPANTKKI-KEVKRLRKEIGLVFQFpeyqlfqeTIEKDIAFGPVNLGenk 137
677788888889999******************************99999888666.77777777777754431111122255556666443333332 PP
TIGR01189 103 .seqktveealekvgL.sgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlar.gGivllathq 186
++ ++v e l+ v+L +++ ++ +Ls GqkrR+ala ++ +LDEPt lD +g e + +l++ ++ +++ th+
MMSYN1_0642 138 qEAYNKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHN 224
233448889999999955788888899**************************************9999987544315567777776 PP
>> TIGR01978 sufC: FeS assembly ATPase SufC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 55.0 1.3 2.4e-17 1.8e-15 14 228 .. 39 248 .. 34 260 .. 0.81
Alignments for each domain:
== domain 1 score: 55.0 bits; conditional E-value: 2.4e-17
TIGR01978 14 eiLkglnlevkkGevhaimGpnGsGkstLskvlag...hekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrka 108
+ L++ +l+ kk +v ++G+ GsGkst+ + g +e+ ++ G+ ++ +++ +++ r r+ + l fq pe +e + + + +
MMSYN1_0642 39 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGliiSETGQIIVGDYAIP-ANTKKIKEVKRLRKEIGLVFQFPEYQ---LFQETIEKDIAFGPVN 132
56999***********************987655522255666666665554.456778888999***********853...2344455444444444 PP
TIGR01978 109 rgeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyer 205
ge+ ++ ++ +++ e l+l++l+e++++Rs e sGG k+r + + ++ + +LDe GlD + ++ ++l++e +k ++++th+
MMSYN1_0642 133 LGEN--KQEAY-NKVPELLKLVQLPEDYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMD 226
5555..35566.77999**************9765.9*********************************************9998999*******98 PP
TIGR01978 206 llelikPdvvhvlldGrivksGd 228
+ i+ d v v+++G++++ G+
MMSYN1_0642 227 QVLRIA-DEVIVMHEGKVIAIGS 248
887775.8899********9996 PP
>> TIGR00630 uvra: excinuclease ABC subunit A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.0 0.1 3.3e-05 0.0024 622 685 .. 40 106 .. 30 112 .. 0.80
2 ! 34.9 0.0 1.6e-11 1.2e-09 474 589 .. 151 260 .. 134 269 .. 0.76
Alignments for each domain:
== domain 1 score: 14.0 bits; conditional E-value: 3.3e-05
TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLi...ndiLvkaleerlnkaktekgkvkeieGlekldkvi 685
l++ +++++ +++t++ G gsGkst+i n +++ + + + ++ + ++++k+i+ +++l k i
MMSYN1_0642 40 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIqltNGLIISETGQIIVGDYAIPANTKKIKEVKRLRKEI 106
6889999********************9922234456666677778888899999999888887755 PP
== domain 2 score: 34.9 bits; conditional E-value: 1.6e-11
TIGR00630 474 vGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrd.lGntlivvehD.eetireaDyvvdiGPgaGehG 569
v L +++r+ lsGG ++r++la i + G vlDeP GL ++ +e +i+ ++rl + +i+v h+ ++++r aD v+ + h
MMSYN1_0642 151 VQLPEDYVKRSPFELSGGQKRRVALAGIIA--MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKeYKKRIIMVTHNmDQVLRIADEVIVM------HE 240
444444567888889999999999998885..6688889999999999999999999999985415677888888834567889999876......78 PP
TIGR00630 570 Gevvasgsleellkkkeslt 589
G+v+a gs+ e+ ++ e lt
MMSYN1_0642 241 GKVIAIGSPFEIFSNMELLT 260
88888888888888877666 PP
>> TIGR00956 3a01205: pleiotropic drug resistance family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.3 0.1 0.0012 0.085 747 810 .. 9 72 .. 1 130 [. 0.67
2 ! 28.8 0.0 7.5e-10 5.5e-08 210 294 .. 165 248 .. 162 256 .. 0.91
Alignments for each domain:
== domain 1 score: 8.3 bits; conditional E-value: 0.0012
TIGR00956 747 eeveeekesgeeifewrdltyevkikke.krvlLdevdGwvkPGkltALmGasGAGkttLlnvLa 810
++ ++ + +++i ++ +++y+ k+ + + L++ + +k k+t ++G+ G Gk t+++
MMSYN1_0642 9 NQNLKDIDFSKDI-ILDNVSYTYAKKTPfEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTN 72
3333344444555.456678877666643567899999999999999999999999999876433 PP
== domain 2 score: 28.8 bits; conditional E-value: 7.5e-10
TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGk 294
+sGG+++Rv++a +++++++++++D+ t GLD +f++ + + k+ ++ + +++ + d+v+v++eGk i G+
MMSYN1_0642 165 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIM-VTHNMDQVLRIADEVIVMHEGKVIAIGS 248
69*****************************************9999999887655.55667889****************9886 PP
>> TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.3 0.1 3.8e-12 2.8e-10 440 633 .. 39 251 .. 2 259 .. 0.66
Alignments for each domain:
== domain 1 score: 36.3 bits; conditional E-value: 3.8e-12
TIGR01271 440 pvlknislklekgqllavagstgsgkssllmm............ilgel.epseg.kikhsgr....isfspqvs..wimpgtikdniifg.lsydey 516
l n sl ++k ++ +v g+tgsgks+++ + i+g+ p++ kik r i q++ ++ ti ++i fg + e
MMSYN1_0642 39 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLtngliisetgqiIVGDYaIPANTkKIKEVKRlrkeIGLVFQFPeyQLFQETIEKDIAFGpVNLGEN 136
36999**********************99865111111111111444432354432577666522234455555422356677777777775666777 PP
TIGR01271 517 rytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckll..anktrilvtskleh.l 611
+ + k +l + + +l+e + lsggq+ r++la + d + +ld p + ld e + ++ + +l +k i+vt ++ l
MMSYN1_0642 137 KQEAYNKVPELLK-LVQLPE---DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL-FERLNkeYKKRIIMVTHNMDQvL 229
7666666655543.334444...345667889************************************985443.223321034555789****8736 PP
TIGR01271 612 kkadkilllhegscyfygtfse 633
+ ad ++++heg+ g+ e
MMSYN1_0642 230 RIADEVIVMHEGKVIAIGSPFE 251
77***********998887554 PP
>> TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.2 0.0 3.2e-11 2.3e-09 636 848 .. 20 252 .. 3 260 .. 0.65
Alignments for each domain:
== domain 1 score: 33.2 bits; conditional E-value: 3.2e-11
TIGR00957 636 sitvknatftwardep...ptlngltlsipegalvavvgqvgcgksslls..................allaemdkvegkvalkgsvayvpqqawiq. 711
i + n ++t+a++ p +ln+ +l+ + + +v+g g gks+++ a+ a+ +k++ l+ + v q q
MMSYN1_0642 20 DIILDNVSYTYAKKTPfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQltngliisetgqiivgdyAIPANTKKIKEVKRLRKEIGLVFQFPEYQl 117
56667777777777772223455556666777777777777777776653111111111111111111333445555555566666666655433332 PP
TIGR00957 712 .ndslrenilfgk.aleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpk 807
+++++++i fg +l e++ +a + l l lp + + +lsggqk+rv+la + d + +ld+p +d + f ++
MMSYN1_0642 118 fQETIEKDIAFGPvNLGENKQEAYNKV-PELLKLVQLP---EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGE-EDFINLFERL 210
256888899999525555554443333.3333455556...456788899*********************************9855.5566677666 PP
TIGR00957 808 gllknktrilvthgis.ylpqvdviivlsdgkisemgsyqel 848
+k i+vth++ l +d +iv+ +gk+ +gs e+
MMSYN1_0642 211 NKEYKKRIIMVTHNMDqVLRIADEVIVMHEGKVIAIGSPFEI 252
6667788899*****7256778*************9986655 PP
>> TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.7 0.8 2.1e-05 0.0015 420 456 .. 32 70 .. 28 75 .. 0.90
Alignments for each domain:
== domain 1 score: 14.7 bits; conditional E-value: 2.1e-05
TIGR00929 420 sgtPfyfNfHvrdake..vlGhTlIfGptgsGKTvllnf 456
++tPf f ++++ + + T+++G+tgsGK++++++
MMSYN1_0642 32 KKTPFEFKALNNTSLTfkKNKVTCVIGTTGSGKSTMIQL 70
689****999999887888999**************986 PP
>> TIGR00618 sbcc: exonuclease SbcC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.6 0.4 0.0012 0.091 17 44 .. 44 68 .. 35 70 .. 0.76
2 ? 1.8 0.0 0.14 10 981 1022 .. 184 226 .. 149 241 .. 0.79
Alignments for each domain:
== domain 1 score: 8.6 bits; conditional E-value: 0.0012
TIGR00618 17 eslidftalglklfvicGktGaGKtsLl 44
+sl + +k+ ++ G tG+GK++++
MMSYN1_0642 44 TSLTFKK---NKVTCVIGTTGSGKSTMI 68
4444444...9***************98 PP
== domain 2 score: 1.8 bits; conditional E-value: 0.14
TIGR00618 981 dsLfiDEGFGslDedsldraveiLdaike..vskmigviSHvpe 1022
+ L++DE G lD + + ++ + +++ ++i v+ H +
MMSYN1_0642 184 NTLVLDEPTGGLDPKGEEDFINLFERLNKeyKKRIIMVT-HNMD 226
469************************998555666666.7443 PP
>> TIGR02168 SMC_prok_B: chromosome segregation protein SMC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.0 0.3 0.2 15 16 37 .. 43 65 .. 38 69 .. 0.85
2 ? 6.5 0.0 0.0044 0.33 1092 1154 .. 165 225 .. 164 238 .. 0.82
Alignments for each domain:
== domain 1 score: 1.0 bits; conditional E-value: 0.2
TIGR02168 16 kttinfe.kgitgiVGPNGcGKS 37
t++ f+ +++t ++G G+GKS
MMSYN1_0642 43 NTSLTFKkNKVTCVIGTTGSGKS 65
6889999568************9 PP
== domain 2 score: 6.5 bits; conditional E-value: 0.0044
TIGR02168 1092 LSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFakllkefskktQ..FIviTHnk 1154
LSGG K +Ala + A+ ++ +LDE LD++ e F++l+++++k+ +I++THn
MMSYN1_0642 165 LSGGQKRRVALAGIIAM-DGNT---LVLDEPTGGLDPKGEEDFINLFERLNKEYKkrIIMVTHNM 225
78888888888877776.4444...69***********************9976556*******5 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (303 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 378 (0.0842246); expected 89.8 (0.02)
Passed bias filter: 291 (0.0648396); expected 89.8 (0.02)
Passed Vit filter: 98 (0.021836); expected 4.5 (0.001)
Passed Fwd filter: 61 (0.0135918); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 61 [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.32
# Mc/sec: 1359.75
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0642 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0643 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0643.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0643/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0643 [L=408]
Description: ecfA 4=Probable Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-102 341.1 2.3 1e-102 341.1 2.3 1.7 2 TIGR04520 ECF_ATPase_1: energy-coupling factor transporter A
2.7e-72 241.2 1.3 2.7e-72 241.2 1.3 1.7 2 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
2.6e-44 149.7 0.4 3.9e-44 149.2 0.4 1.3 1 TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC trans
9.1e-44 147.2 0.0 2.2e-43 145.9 0.0 1.6 1 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
1.8e-43 147.1 3.7 8.2e-43 144.9 0.0 2.0 2 TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transp
1.8e-43 147.0 3.6 1.8e-43 147.0 3.6 1.8 2 TIGR01186 proV: glycine betaine/L-proline transport ATP bind
1.4e-40 137.2 0.1 3.1e-40 136.1 0.0 1.6 1 TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit,
1.6e-40 137.0 0.1 3.3e-40 136.1 0.1 1.5 1 TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding pr
6.6e-40 135.0 2.2 6.6e-40 135.0 2.2 1.5 1 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
7.2e-40 135.0 1.5 1e-39 134.4 1.5 1.3 1 TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding p
3.9e-38 129.1 0.2 3.9e-38 129.1 0.2 2.1 2 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
4.3e-38 128.9 1.3 4.6e-38 128.8 0.6 1.3 1 TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC trans
6.6e-38 128.6 0.3 1.3e-37 127.7 0.3 1.4 1 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
8.8e-38 128.2 8.8 1.5e-37 127.4 8.8 1.4 1 TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
9.9e-38 127.9 0.1 9.9e-38 127.9 0.1 1.6 1 TIGR02673 FtsE: cell division ATP-binding protein FtsE
1.8e-37 127.0 7.0 3.6e-37 126.0 0.0 2.1 2 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
4.8e-37 125.8 0.0 7e-37 125.2 0.0 1.1 1 TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system
8.8e-37 124.5 0.5 8.8e-37 124.5 0.5 2.5 1 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
1.8e-36 123.6 1.1 2.1e-36 123.4 0.4 1.5 1 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
2.3e-36 123.3 0.0 3.9e-36 122.5 0.0 1.3 1 TIGR00958 3a01208: antigen peptide transporter 2
3.5e-36 122.6 0.5 1.5e-35 120.6 0.5 1.9 1 TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transport
5.7e-36 122.5 0.0 8.1e-36 122.0 0.0 1.2 1 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
2.1e-33 113.8 0.7 2.1e-33 113.8 0.7 1.7 1 TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding protei
2.9e-33 113.3 5.4 9.9e-33 111.5 0.1 2.0 2 TIGR01187 potA: polyamine ABC transporter, ATP-binding prote
3.1e-33 113.3 0.0 3.1e-33 113.3 0.0 1.5 1 TIGR02769 nickel_nikE: nickel import ATP-binding protein Nik
1.7e-32 110.8 0.6 1.7e-32 110.8 0.6 2.3 2 TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP
4.5e-32 109.4 0.1 8.8e-32 108.4 0.1 1.4 1 TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-bindin
4.8e-32 109.2 0.5 1.2e-31 107.9 0.0 1.8 2 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
4.9e-32 109.1 0.1 4.9e-32 109.1 0.1 1.6 1 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
1.2e-31 108.3 0.0 2.1e-31 107.4 0.0 1.3 1 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
1.5e-31 107.6 0.1 2.9e-31 106.7 0.1 1.4 1 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
3.4e-31 106.8 2.1 3.4e-31 106.8 2.1 2.2 2 TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC tran
5.6e-31 105.6 1.8 8.4e-31 105.0 1.8 1.4 1 TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
1.2e-30 104.6 0.2 1.2e-30 104.6 0.2 1.7 2 TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-bi
3.7e-30 102.9 0.0 6.3e-30 102.2 0.0 1.3 1 TIGR01288 nodI: nodulation ABC transporter NodI
4.7e-30 102.7 1.7 4.7e-30 102.7 1.7 2.9 2 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
1.2e-29 101.3 0.0 1.9e-29 100.7 0.0 1.3 1 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
3e-29 100.1 0.4 3e-29 100.1 0.4 2.1 2 TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-bindi
3.5e-29 99.7 0.8 3.5e-29 99.7 0.8 1.8 2 TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-bi
3.9e-28 96.2 3.3 5.8e-28 95.6 3.3 1.3 1 TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system
7.3e-28 95.4 0.9 1.2e-27 94.7 0.9 1.3 1 TIGR01192 chvA: glucan exporter ATP-binding protein
8.5e-25 85.4 0.0 1.6e-24 84.5 0.0 1.4 1 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
4e-24 83.3 1.7 4e-24 83.3 1.7 1.8 2 TIGR01978 sufC: FeS assembly ATPase SufC
2.2e-23 81.1 1.3 2.2e-23 81.1 1.3 2.3 2 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
4.9e-23 79.9 2.8 4.9e-23 79.9 2.8 2.5 2 TIGR03740 galliderm_ABC: lantibiotic protection ABC transpor
5.4e-23 79.3 0.0 8e-23 78.7 0.0 1.2 1 TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
1.3e-21 75.1 4.0 1.5e-19 68.4 0.0 2.6 2 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
3.6e-21 72.3 0.1 5.4e-21 71.7 0.1 1.2 1 TIGR00957 MRP_assoc_pro: multi drug resistance-associated pr
6.4e-21 73.0 0.7 9.2e-20 69.3 0.7 2.1 1 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
1.7e-19 66.2 0.0 2.2e-19 65.8 0.0 1.0 1 TIGR01257 rim_protein: rim ABC transporter
3.3e-19 65.9 1.1 2.5e-11 39.8 0.1 2.1 2 TIGR01271 CFTR_protein: cystic fibrosis transmembrane conduc
3.5e-19 66.6 7.6 3.4e-11 40.2 0.2 2.7 2 TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protei
1.2e-18 65.0 11.0 2.1e-10 37.8 7.9 2.6 2 TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD f
4.8e-18 63.4 0.1 5e-08 30.6 0.0 2.6 2 TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein
4.2e-17 59.9 1.2 1.3e-16 58.3 0.2 2.1 1 TIGR00955 3a01204: pigment precursor permease
1.4e-12 45.6 0.0 4.5e-12 43.9 0.0 1.8 1 TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein
1.9e-10 37.8 3.4 1.7e-05 21.4 1.5 2.6 3 TIGR00954 3a01203: peroxysomal long chain fatty acyl transpo
3.8e-07 26.0 5.9 5.8e-06 22.1 0.0 2.7 3 TIGR00956 3a01205: pleiotropic drug resistance family protei
7.2e-07 25.7 13.7 1.2e-06 25.0 0.1 3.0 3 TIGR00630 uvra: excinuclease ABC subunit A
------ inclusion threshold ------
0.013 12.9 3.6 0.022 12.1 3.6 1.4 1 TIGR03637 cas1_YPEST: CRISPR-associated endonuclease Cas1, s
0.04 11.6 0.2 0.04 11.6 0.2 3.2 3 TIGR00041 DTMP_kinase: dTMP kinase
Domain annotation for each model (and alignments):
>> TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.0 0.4 6.2 4.6e+02 105 127 .. 57 79 .. 34 118 .. 0.57
2 ! 341.1 2.3 1.4e-104 1e-102 1 269 [] 140 406 .. 140 406 .. 0.99
Alignments for each domain:
== domain 1 score: -2.0 bits; conditional E-value: 6.2
TIGR04520 105 Nlgvpreeikkrveealkkvgle 127
N++ +++++k+ ++++ ++++l
MMSYN1_0643 57 NIRQQQKQVKAEIKKISATTKLF 79
44444444444444444444433 PP
== domain 2 score: 341.1 bits; conditional E-value: 1.4e-104
TIGR04520 1 ievenvsfkYeeeekkalkdvsleiekgefvaiiGhNGsGKsTlakllnglllpeegkvlvdgletleeenlweirkkvglvfqnPdnqlvgatveed 98
ie++++sfkY e +a++dvs++i++ge+v+iiGhNGsGKsT++k+l g+l++++g++++ g ++++n+ + rk +g+vfqnPdnq++g+tve d
MMSYN1_0643 140 IEINHLSFKYGPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNI-VNDHNIEQARKFLGIVFQNPDNQFIGSTVEAD 236
89**********9999***********************************************98.9******************************* PP
TIGR04520 99 vaFglENlgvpreeikkrveealkkvgleefrkkepkkLSGGqkqrvaiagvlalepeiiilDEatsmLDpkgrkevletvkklkkeekltvisitHd 196
+aFglEN++++++++ +++ +++kkvg+e kkep +LSGGqkqrvaia+ lal+p+i+i+DEatsmLDpkg++e+ e++ +l++++++t++sitHd
MMSYN1_0643 237 IAFGLENKRIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHD 334
************************************************************************************************** PP
TIGR04520 197 leeaveadrvivlekgkivaegtpkeifskkeklkelgldvPfvvelaeelkkkgieleeeilteeelveelc 269
++e+++ad+vivl++gk+v ++p ei+++k+ l++++ldvPfv + eel+kkgi++ ++++ +elve++c
MMSYN1_0643 335 MDEILNADKVIVLDHGKLVRVAKPLEIVEDKDFLRNIQLDVPFVGLVREELEKKGIKIA-STQNIDELVEQIC 406
**********************************************************9.778********98 PP
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.1 1.0 5.1 3.8e+02 235 266 .. 74 105 .. 45 122 .. 0.48
2 ! 241.2 1.3 3.6e-74 2.7e-72 1 278 [. 140 406 .. 140 407 .. 0.96
Alignments for each domain:
== domain 1 score: -2.1 bits; conditional E-value: 5.1
TIGR04521 235 eeeeleklklelPevlelvkklkkkglevkkk 266
+++l k++l+l e+l+ kl++++ +++k+
MMSYN1_0643 74 ATTKLFKQNLKLAESLYKKIKLTNNQNDINKA 105
22333333333333333333333333333333 PP
== domain 2 score: 241.2 bits; conditional E-value: 3.6e-74
TIGR04521 1 iklknvsyiYqkgtpfekkalkdvsleiekgefvaiiGhtGsGKstliqhlngLlkptsGeveidgleikakkkkkkklkelrkkvglvFQfpekQLF 98
i+++++s+ Y ++ p +a++dvs++i++ge+v+iiGh+GsGKst+ + l g l+ ++Ge++i g + +++++++ rk +g+vFQ p++Q+
MMSYN1_0643 140 IEINHLSFKYGPEFP---NAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIV-----NDHNIEQARKFLGIVFQNPDNQFI 229
7999******99998...8************************************************99.....555689****************** PP
TIGR04521 99 eetvlkdiafgpknlglseeeveervkealelvgldeellerspfeLSGGqkrrvAiagvLamepevLvlDEptaGLDpkgrkellellkklkkekgk 196
+tv+ diafg +n ++ +++ + + + ++vg++ l+++p++LSGGqk+rvAia+ La++p+++++DE+t+ LDpkg++e+ e++ +l++++ k
MMSYN1_0643 230 GSTVEADIAFGLENKRIDPKKMPDIILDSAKKVGMEW-ALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTK 326
***********************************76.56899******************************************************* PP
TIGR04521 197 tvilvtHsmedvaeladrvivlkkGkvvldgtpeevfkeeeeleklklelPevlelvkklkkkglevkkkvltleelaeeik 278
t++ +tH+m+++++ ad+vivl++Gk+v +p e+ +++++l++++l++P v + ++l+kkg+++ ++ +++el+e+i
MMSYN1_0643 327 TILSITHDMDEILN-ADKVIVLDHGKLVRVAKPLEIVEDKDFLRNIQLDVPFVGLVREELEKKGIKIAST-QNIDELVEQIC 406
************98.9**************************************************8766.69999999885 PP
>> TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 149.2 0.4 5.3e-46 3.9e-44 411 677 .. 95 367 .. 53 372 .. 0.83
Alignments for each domain:
== domain 1 score: 149.2 bits; conditional E-value: 5.3e-46
TIGR03797 411 laetlievlavvplyerakPileaepEvdeek...vdpgkLsG.aievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFek 504
l++ +++++ +e ak +l + +Ev + + ++ +kLs aie+++++F+Y ++ p +ddvs++i++Ge+v+i+G GsGKSt+ ++L+g +
MMSYN1_0643 95 LTNNQNDINKAKQEVEIAKSMLLQLKEVINGQgksIKLEKLSDiAIEINHLSFKYGPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLN 192
5555556666666666666666666666544400044455554489**************************************************** PP
TIGR03797 505 PesGsvlyDGqdlekldvqavRrqlGvVLQng..rllsgsileniaggasltld.eaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlli 599
++G++ G+ +++ ++++ R+ lG+V+Qn +++ +++ ia + l+ + + +m + D g+ +++ +lSGGQ+QR+ i
MMSYN1_0643 193 AQHGEIKIFGNIVNDHNIEQARKFLGIVFQNPdnQFIGSTVEADIA----FGLEnKRIDPKKMPDIILDSA-KKVGMEWALKKEPLNLSGGQKQRVAI 285
******************************9521455555555554....444414567788888888854.4689999999999************* PP
TIGR03797 600 AralvrkPrillfDEATSALDNrtQaiVsesleklkvtR....iviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGl 677
A +l+ P i++fDEATS LD + ++ + e + +l+ tR + i H + i nad+++vl++G++v + e+++ + +
MMSYN1_0643 286 ASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRtktiLSITHDMDEILNADKVIVLDHGKLVRVAKPLEIVEDKDF 367
************************************999666567***********************99988888877665 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 145.9 0.0 3e-45 2.2e-43 4 188 .. 153 336 .. 150 338 .. 0.95
Alignments for each domain:
== domain 1 score: 145.9 bits; conditional E-value: 3e-45
TIGR01166 4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlse 101
+++++++++++++ge ++++G+nG+Gkst+ + l G+l+ ++G++ + G+ ++ +++ ++rk +++v+q+pd+q++ ++v+ d+afg+ n +++
MMSYN1_0643 153 FPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVN--DHNIEQARKFLGIVFQNPDNQFIGSTVEADIAFGLENKRIDP 248
57899*********************************************9986..57899************************************* PP
TIGR01166 102 aeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvis.thdvd 188
+++ + ++ ++v+++ ++ lsgG+k+rvaia+ +al pd++++de t+ ldp+G++++ ei+ +lre ++ ++s thd+d
MMSYN1_0643 249 KKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSiTHDMD 336
******************99*****************************************************99876666659**98 PP
>> TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.8 2.1 0.35 26 268 345 .. 38 120 .. 8 124 .. 0.70
2 ! 144.9 0.0 1.1e-44 8.2e-43 5 225 .. 140 364 .. 136 382 .. 0.92
Alignments for each domain:
== domain 1 score: 1.8 bits; conditional E-value: 0.35
TIGR03265 268 gesvklavrPediklka...aekeenllkarvedveflGavvrveleleelkgkalvadvsaeeve..klkikagekievele 345
+++ ++r ++i + +++ ++ka++++++ + ++ +l+l e k++ +++++ k+++++++++ ++l+
MMSYN1_0643 38 NNQYINLIRQDNIDKIEkqnIRQQQKQVKAEIKKISATTKLFKQNLKLAESLYKKIKLTNNQNDINkaKQEVEIAKSMLLQLK 120
55566677887775332234789999*********************999888877776666665522455666677766665 PP
== domain 2 score: 144.9 bits; conditional E-value: 1.1e-44
TIGR03265 5 lsieeiekefe.af.talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlp.pqkrdy.GivfqsY.aLfPnltvaeni 97
++i++++ +++ +f +a++d+s+++++ge+v+++G G Gk+t+ +i+ G+ +++ G+i + g+ + + q+r + Givfq+ f tv+++i
MMSYN1_0643 140 IEINHLSFKYGpEFpNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNiEQARKFlGIVFQNPdNQFIGSTVEADI 237
56666666666433379************************************************9976525678877*****95378********** PP
TIGR03265 98 ayGLknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdq 195
a+GL+nk+++ +++ + + + vg++ + +k P lsGGq+qrva+a lal P+++++De s LD k + +++e + +l++ t + +thd
MMSYN1_0643 238 AFGLENKRIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDM 335
*************************************************************************************9999********* PP
TIGR03265 196 eealslaDrivvmnkgkieqvgtPeeiYeq 225
+e l aD+++v+++gk+ +v+ P ei e+
MMSYN1_0643 336 DEILN-ADKVIVLDHGKLVRVAKPLEIVED 364
**986.9********************875 PP
>> TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 1.5 3.3 2.4e+02 267 309 .. 44 90 .. 15 131 .. 0.50
2 ! 147.0 3.6 2.5e-45 1.8e-43 8 220 .. 156 364 .. 152 401 .. 0.92
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 3.3
TIGR01186 267 llkdedvesl...yvvdrekklvGvv.dvesikkarkkaqlledvlk 309
l+++++++ + + +++k+++ + +++ k k++ l + l
MMSYN1_0643 44 LIRQDNIDKIekqNIRQQQKQVKAEIkKISATTKLFKQNLKLAESLY 90
33333333221101112222222222112222222233333333333 PP
== domain 2 score: 147.0 bits; conditional E-value: 2.5e-45
TIGR01186 8 gvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqki.alfPhmtildnislglellkideq 104
+++dv++ i++Ge++ iiG GsGkst+ ++l +++ G+i i G+ + + + ++ rk +++v+q+ f t+ +i++gle ++id +
MMSYN1_0643 156 AIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQ----ARKFLGIVFQNPdNQFIGSTVEADIAFGLENKRIDPK 249
899********************************************8776655555....59********96367999******************* PP
TIGR01186 105 erkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivi 202
+ + l++ k+v++e ++ P +lsGG++qrv +a +la +Pd+++ dea s ldP + e+++ +v+l+++ kti+ ithd+de l +d++++
MMSYN1_0643 250 KMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDMDEILN-ADKVIV 346
****************************************************************************************987.9***** PP
TIGR01186 203 lkaGeivqvGtPdeilrn 220
l +G++v+v P ei+++
MMSYN1_0643 347 LDHGKLVRVAKPLEIVED 364
***************975 PP
>> TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 136.1 0.0 4.2e-42 3.1e-40 1 223 [. 139 365 .. 139 373 .. 0.94
Alignments for each domain:
== domain 1 score: 136.1 bits; conditional E-value: 4.2e-42
TIGR03864 1 aleveglsfaygkr..ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrap.kealarlGvvfqqstlD.ldlsveqn 94
a+e+++lsf+yg + +a+ddvs+t+++ge+v ++G nG+Gkst+ ++l ++++a++geik++G +++++ ++a + lG+vfq++ + +ve++
MMSYN1_0643 139 AIEINHLSFKYGPEfpNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNiEQARKFLGIVFQNPDNQfIGSTVEAD 236
689*********97558***********************************************999866516778889*****986552789***** PP
TIGR03864 95 lryhaaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathl 192
+ + + + + ++ + i + +++g++ +++ +L+GG+++rv ia +l +P+++++Deat LD++ ++++ e + +l +++ ++L th
MMSYN1_0643 237 IAFGLENKRIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHD 334
************************************************************************************************** PP
TIGR03864 193 vdeveaedrlvvlhkGkvlaqGaaaelaaea 223
+de+ ++d+++vl++Gk++ ++ e+++++
MMSYN1_0643 335 MDEILNADKVIVLDHGKLVRVAKPLEIVEDK 365
******************9988888887765 PP
>> TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 136.1 0.1 4.4e-42 3.3e-40 1 221 [. 140 364 .. 140 381 .. 0.92
Alignments for each domain:
== domain 1 score: 136.1 bits; conditional E-value: 4.4e-42
TIGR00968 1 ilianvskrfGd.f.qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkv..rdreiGfvfqhy.alfkhltvrdni 93
i+i+++s ++G f +a+ddv++++++G+ v+++G GsGkst+ +++ G+ + + G+i + G+ v ++ ++ +G+vfq+ f tv+ +i
MMSYN1_0643 140 IEINHLSFKYGPeFpNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIeqARKFLGIVFQNPdNQFIGSTVEADI 237
68899999999523479**********************************************999876652044569*****96268********** PP
TIGR00968 94 afGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdq 191
afGle +++d +k+ + + + + v++e ++ p +lsGGq+qrva+a +la++p+++++de + ld k ++e+++ + +l + t + +thd
MMSYN1_0643 238 AFGLENKRIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDM 335
**************************************************************************************999********* PP
TIGR00968 192 eealevadrivvlekGkieqvgsaeevyde 221
+e l+ ad+++vl++Gk+ +v + e+ ++
MMSYN1_0643 336 DEILN-ADKVIVLDHGKLVRVAKPLEIVED 364
**998.9*****************999875 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 135.0 2.2 9e-42 6.6e-40 445 682 .. 118 355 .. 93 366 .. 0.86
Alignments for each domain:
== domain 1 score: 135.0 bits; conditional E-value: 9e-42
TIGR03375 445 klpvereeekrllsreklkG.eielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrr 541
+l++ + + + ++ ekl+ +ie++++sfkY e +a+++vs++i+ Ge v iiG++GsGKst+ k+l+g++++++G++++ g ++ + ++ r+
MMSYN1_0643 118 QLKEVINGQGKSIKLEKLSDiAIEINHLSFKYGPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQARK 215
44444566677788888765489*************************************************************************** PP
TIGR03375 542 nigyvpqdv..tLfyGtlrdNialgap..aaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalD 635
+g+v q++ + + t+ ia+g + ++ +++ ++ + ++ G++ ++ + +LSgGQ+q va+a l dp+i+++DE ts+lD
MMSYN1_0643 216 FLGIVFQNPdnQFIGSTVEADIAFGLEnkRIDPKKMPDIIL-------DSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLD 306
******975215666689999*9875422677777777763.......356788******************************************** PP
TIGR03375 636 nsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivad 682
+ ++++e + +l + kT++ +tH + + +d++ivld+G++v
MMSYN1_0643 307 PKGKREIKEIMVQLREtrTKTILSITHDMDEILNADKVIVLDHGKLVRV 355
***********9998766899*********9999***********9965 PP
>> TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 134.4 1.5 1.4e-41 1e-39 284 549 .. 89 355 .. 58 373 .. 0.83
Alignments for each domain:
== domain 1 score: 134.4 bits; conditional E-value: 1.4e-41
TIGR02203 284 likplksLtnvsaklqkglaaaesvfallDsppekdeGt...raler.vrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvn 377
l+k +k Ltn ++ + k e ++l + +e+ +G+ +le+ +e+++++f+y+++ +a+d++s+++++Ge v ++G GsGkst+ +
MMSYN1_0643 89 LYKKIK-LTNNQNDINKAKQEVEIAKSMLLQLKEVINGQgksIKLEKlSDIAIEINHLSFKYGPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISK 185
555554.7887777777766666666666666666555411134555456789********************************************* PP
TIGR02203 378 llpRFyepdsGeillDgvdladlkLasLRrqvalvsq..dvvLFddtiaenvaYgel.eevdeaeveealaaaylkdlvdklpeGldtevGengskLs 472
+l ++ ++Gei + g+ ++d ++++ R+ + +v q d t+ +++a+g + + +d +++ +++ ++ + G++ + ++ +Ls
MMSYN1_0643 186 ILIGVLNAQHGEIKIFGNIVNDHNIEQARKFLGIVFQnpDNQFIGSTVEADIAFGLEnKRIDPKKMPDIILDS-------AKKVGMEWALKKEPLNLS 276
***********************************99334678899*********762556666666655443.......3456************** PP
TIGR02203 473 GGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRtt..lviahRLstiekaDrivvlddGkiver 549
GGq+qR+aia l d i+i Deats LD R++++ + +l + Rt l i h + i +aD+++vld+Gk+v
MMSYN1_0643 277 GGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKtiLSITHDMDEILNADKVIVLDHGKLVRV 355
**********************************************9986225599********************976 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.7 3.5 0.9 66 46 125 .. 33 116 .. 25 126 .. 0.76
2 ! 129.1 0.2 5.4e-40 3.9e-38 2 232 .. 140 363 .. 139 369 .. 0.85
Alignments for each domain:
== domain 1 score: 0.7 bits; conditional E-value: 0.9
TIGR00972 46 slnrlndlveevrieGkv.llegkdiydkkldvvelrkkvG...mvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesL 125
ln ln+++ ++ + ++ +e+++i +++ +v++ kk+ +f++ + s+y+ + ++ + ++i++ k+ ei+++ L
MMSYN1_0643 33 KLNDLNNQYINLIRQDNIdKIEKQNIRQQQKQVKAEIKKISattKLFKQNLKLAESLYKKIKLTNNQNDINKAKQEVEIAKSML 116
5677776665555555553688999999998888777777522268999999**************999988888778887766 PP
== domain 2 score: 129.1 bits; conditional E-value: 5.4e-40
TIGR00972 2 levknlklfygek..ealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkp.npfp. 95
+e+++l++ yg + +a++dv++ i++ + +++iG G+Gkst+ + l + ++ +G++ + g+ ++d+ ++ + rk +G+vfq+p n f
MMSYN1_0643 140 IEINHLSFKYGPEfpNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQ-----HGEIKIFGNIVNDH--NIEQARKFLGIVFQNPdNQFIg 230
789999****976346*****************************9986554443.....45665555555555..56677**********9678983 PP
TIGR00972 96 msiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk 193
++ ++a+gl+ k i kk + +i+ +s kk+++ lkk++l+LsGGq+qr++ia +la++P+++++De ts LDp+ ++i+e++ +L+++
MMSYN1_0643 231 STVEADIAFGLENKRIDPKK-MPDIILDSAKKVGME----WALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRET 323
556669********988775.677888888999985....58999***************************************************98 PP
TIGR00972 194 ..ytivivthnmqqaarvsdktaffleGelveegeteqife 232
ti+ +th+m+ +dk++++ +G+lv +++ +i+e
MMSYN1_0643 324 rtKTILSITHDMDEILN-ADKVIVLDHGKLVRVAKPLEIVE 363
5578999*****99765.8**************99999886 PP
>> TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 128.8 0.6 6.3e-40 4.6e-38 448 693 .. 101 356 .. 72 370 .. 0.77
Alignments for each domain:
== domain 1 score: 128.8 bits; conditional E-value: 6.3e-40
TIGR03796 448 Dvlenpvdeelee........eeekaaeseek...ekLsG.kvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepws 533
D+ +++++ e + + + + + ekLs ++e+++++f y + ++ i+d+s+++++G+ v ++G GsGksti+k++ G+ + +
MMSYN1_0643 101 DINKAKQEVEIAKsmllqlkeVINGQGK---SiklEKLSDiAIEINHLSFKYGPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQH 195
3444443333333333322111111122...133478875379******************************************************* PP
TIGR03796 534 GeilfDgkpreeiprevlanslalvdq..divlfegtvrdnlt..lwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiA 627
Gei + g+ ++ + e ++ l +v q d ++ ++tv +++ l ++ i +++ + i d+ a++ g+e l+++ nlsGGq+qR+ iA
MMSYN1_0643 196 GEIKIFGNIVNDHNIEQARKFLGIVFQnpDNQFIGSTVEADIAfgLENKRIDPKKMPD-----IILDS--AKKVGMEWALKKEPLNLSGGQKQRVAIA 286
*******999999988899999998883356778889999998224455555555554.....55554..567899999******************* PP
TIGR03796 628 RaLvknPsiLilDEatsaLDaetEkaide...nlrr.RgctciivaHRLstiRdcdeiivlerGkvverG 693
+L+ +P i+i+DEats LD++ ++i+e +lr+ R t++ ++H + i ++d++ivl++Gk+v+
MMSYN1_0643 287 STLALDPDIMIFDEATSMLDPKGKREIKEimvQLREtRTKTILSITHDMDEILNADKVIVLDHGKLVRVA 356
*********************9987765522267744999999**********************99765 PP
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.7 0.3 1.7e-39 1.3e-37 313 566 .. 115 366 .. 92 373 .. 0.82
Alignments for each domain:
== domain 1 score: 127.7 bits; conditional E-value: 1.7e-39
TIGR02204 313 ellkaksdikaPaqpkalpakvrgeiefeevkfay.ParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldp 409
ll+ k+ i+ + +l + +ie+++++f+y P+ p +a+d++++t+++Ge v ++G G+Gkst+ ++l+ + q+G+i++ G + + +
MMSYN1_0643 115 MLLQLKEVINGQGKSIKLEKLSDIAIEINHLSFKYgPEFP--NAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNI 210
3667777778888888888888999**********55666..79****************************************************** PP
TIGR02204 410 eelrerlalvpqds.alfaas.vleniryGrpdasdeeveaaakaaeadefi..sklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdea 503
e+ r+ l +v q++ + f +s v+ +i++G + + + + i s+ + G + l + ++LsGGqkqr+aia + d i+++dea
MMSYN1_0643 211 EQARKFLGIVFQNPdNQFIGStVEADIAFGLENKRIDPK-------KMPDIIldSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEA 301
************98446777625668****765432221.......12222211334569999*********************************** PP
TIGR02204 504 tsaLdaeseqlvqqaleelmkgrt..tlviahrLatvlkadrivvldkGriveqGthaeLiakgg 566
ts Ld + + +++ + +l + rt l i h + +l+ad+++vld+G++v + e++++ +
MMSYN1_0643 302 TSMLDPKGKREIKEIMVQLRETRTktILSITHDMDEILNADKVIVLDHGKLVRVAKPLEIVEDKD 366
*******************99886215669**********************9988888777655 PP
>> TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.4 8.8 2e-39 1.5e-37 433 703 .. 97 369 .. 22 373 .. 0.82
Alignments for each domain:
== domain 1 score: 127.4 bits; conditional E-value: 2e-39
TIGR01193 433 nlqpklqaarvannrlnevylvdsefkekk..kltelenlngdievndvsysyGyg.sevledislkikknekitlvGlsGsGkstlakllvkffqae 527
n q + +a+ + ++l e +++ ++ ++ + ie+n++s++yG ++++d+s++i++ e +t++G GsGkst+ k+l++ +a+
MMSYN1_0643 97 NNQNDINKAKQEVEIAKSMLLQLKEVINGQgkSIKLEKLSDIAIEINHLSFKYGPEfPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQ 194
4455555555544444455555555554440034445566677899********763699************************************** PP
TIGR01193 528 sGeillngkslkdidkhelrqlinylPqeP.fifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalar 624
+Gei++ g ++d ++++ r+++ + q+P f Gs +e + en ++ ++ +i d k ++G++ l +e ++sgGqkqr+a+a
MMSYN1_0643 195 HGEIKIFGNIVNDHNIEQARKFLGIVFQNPdNQFIGSTVEADIAFGLENKRIDP----KKMPDIILDSAK-KVGMEWALKKEPLNLSGGQKQRVAIAS 287
******************************558*****9988766555544443....344555555433.5799999******************** PP
TIGR01193 625 allsdskvlildestsnldlltekkivenllklkd...ktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfya 703
+l d +++i+de+ts ld + i e +++l++ kti+ ++h ++ ++dk+ivld+Gk++ + e+++ + f +
MMSYN1_0643 288 TLALDPDIMIFDEATSMLDPKGKREIKEIMVQLREtrtKTILSITHDMDEILNADKVIVLDHGKLVRVAKPLEIVEDKDFLR 369
*******************9998887777776654333****************************9999999988888866 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.9 0.1 1.3e-39 9.9e-38 2 213 .. 140 350 .. 139 351 .. 0.92
Alignments for each domain:
== domain 1 score: 127.9 bits; conditional E-value: 1.3e-39
TIGR02673 2 ielekvskeyaagv.eaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfq..Dfkllkdrtv 96
ie++++s++y ++ +a++dvs++i++ge++ ++G+ G+Gk+t+ k+l+g++++++Ge++++g+ v+ ++++ + R+ +g+vfq D++++ tv
MMSYN1_0643 140 IEINHLSFKYGPEFpNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVN---DHNIEQARKFLGIVFQnpDNQFIG-STV 233
8999******9664389**********************************************9887...5679999*********77788775.79* PP
TIGR02673 97 lenvalalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnk.rGttviva 193
++a+ le ++ + +++ + + ++vg+e k+ p +lsgG +qRvaia ++ +P++++ De t lD++ +++i +++ +l + r t++
MMSYN1_0643 234 EADIAFGLENKRIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLREtRTKTILSI 331
************************************************************************************9997625679999* PP
TIGR02673 194 thdeelvervkkrvlelekg 213
thd + + + + +v+ l++g
MMSYN1_0643 332 THDMDEILN-ADKVIVLDHG 350
***987765.4567788887 PP
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.8 4.1 0.48 35 69 148 .. 50 128 .. 23 134 .. 0.70
2 ! 126.0 0.0 4.9e-39 3.6e-37 2 219 .. 140 352 .. 139 353 .. 0.90
Alignments for each domain:
== domain 1 score: 1.8 bits; conditional E-value: 0.48
TIGR02982 69 lkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkq 148
+++++++++ q ++++ ++ + l +qn+++a l +k++ ++++++ ++ ++v + + + + +++ +Gq +
MMSYN1_0643 50 IDKIEKQNIRQQQKQVKAEIKKISATTKL-FKQNLKLAESLYKKIKLTNNQNDINKAKQEVEIAKSMLLQLKEVINGQGK 128
44555555444444444444444444333.48*********************999999999999998888888888855 PP
== domain 2 score: 126.0 bits; conditional E-value: 4.9e-39
TIGR02982 2 ikirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqa.hnlleslt 98
i+i++l+ yg + + d++++i++ge v + G GsGk t+ ++ g+ ++q+Ge+k++g+ ++++++ q r+ +G++fq+ n + t
MMSYN1_0643 140 IEINHLSFKYGP--EFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNI---VNDHNIEQARKFLGIVFQNpDNQFIGST 232
556666655554..4556789**************************99999999**********86...5678999***********8468888889 PP
TIGR02982 99 aeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttil 196
+e ++ ++le +++ k++ + + ++vg+e l++ p +lsgGqkqrvaia +l+ P++++ de t+ ld k re+ e++ +l + ++ til
MMSYN1_0643 233 VEADIAFGLEN-KRIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTIL 329
99999888885.457999999999999*********************************************************************** PP
TIGR02982 197 lvthdnrildvadrivkmedGkl 219
+thd + ad+++ +++Gkl
MMSYN1_0643 330 SITHDMDEILNADKVIVLDHGKL 352
*****8766669*********98 PP
>> TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.2 0.0 9.5e-39 7e-37 9 225 .. 140 359 .. 135 366 .. 0.90
Alignments for each domain:
== domain 1 score: 125.2 bits; conditional E-value: 9.5e-39
TIGR03258 9 vvleslrvaygar..vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlt.h.lppykrnlallvqny.alfphlkveenv 101
+ +++l+ +yg + +dd+s++i+ Ge ++++G+ GsGk+t+ +++ G ++a+ G + + ++ + h + ++ l++++qn f +ve ++
MMSYN1_0643 140 IEINHLSFKYGPEfpNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNdHnIEQARKFLGIVFQNPdNQFIGSTVEADI 237
789*******98733589*******************************************99888635234556679******6368********** PP
TIGR03258 102 afGlrarkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthd 199
afGl ++ ++ + + d+ k v++ a ++ p +lsGGq+qrva+a +l+++pd++++de s ld + + +++e + +l e t+l +thd
MMSYN1_0643 238 AFGLENKRIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLR-ETRTKTILSITHD 334
***************************************************************************998888885.56678******** PP
TIGR03258 200 rdealvladkillmkeGslialGetr 225
de l adk+ ++ +G+l++ ++
MMSYN1_0643 335 MDEILN-ADKVIVLDHGKLVRVAKPL 359
*99885.9***********9988775 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 124.5 0.5 1.2e-38 8.8e-37 12 206 .] 155 347 .. 142 347 .. 0.90
Alignments for each domain:
== domain 1 score: 124.5 bits; conditional E-value: 1.2e-38
TIGR03608 12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnf.aLlenetveenlelalklkkksk 108
+ ++++s++i++Ge+v+i+G+ GsGKst+ il + + ++g++ ++g+ + ++ + r+ lg +Fqn + tve + +l++k++
MMSYN1_0643 155 NAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNI----VNDHNIEQARKFLGIVFQNPdNQFIGSTVEADIAFGLENKRIDP 248
6899****************************988889999*******98....345566668999******952455578***************** PP
TIGR03608 109 kekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelke.egktiiivtHdpevaekadrvie 205
k++ + + + +kvg+e lkk+ +lsgG+kqRva+a +l ++++++ DE t+ LD+k + e+ e++ +l+e + kti+ +tHd+ +ad+vi
MMSYN1_0643 249 KKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLREtRTKTILSITHDMDEILNADKVIV 346
***********************************************************************9873689*********999999*9996 PP
TIGR03608 206 l 206
l
MMSYN1_0643 347 L 347
5 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 123.4 0.4 2.9e-38 2.1e-36 454 681 .. 138 364 .. 93 372 .. 0.85
Alignments for each domain:
== domain 1 score: 123.4 bits; conditional E-value: 2.9e-38
TIGR01846 454 GaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlq..envlfsrsird 549
aie++++ f+y ++ p+ ++++s+ i++Ge++ i+G+ GsGkst++k+l + ++G++ + g + + r+ +g+v+q +n ++ ++
MMSYN1_0643 138 IAIEINHLSFKYGPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQARKFLGIVFQnpDNQFIGSTVEA 235
478999*******************************************************************************5557888888999 PP
TIGR01846 550 nialakPa..iseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei..ckgr 643
+ia + + i+ +k+ + + s+ k G e ++ + +lsGGq+qr+a+a +l +P i+i+deats ld + + i++ + ++ ++ +
MMSYN1_0643 236 DIAFGLENkrIDPKKMPDI-------ILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLreTRTK 326
9998643300333333222.......23356788**********************************************999988888877335677 PP
TIGR01846 644 tviiiahrlstvraadrilvlekGkivesGkheellak 681
t+++i+h ++ + +ad+++vl++Gk+v k e++++
MMSYN1_0643 327 TILSITHDMDEILNADKVIVLDHGKLVRVAKPLEIVED 364
89************************988777776665 PP
>> TIGR00958 3a01208: antigen peptide transporter 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 122.5 0.0 5.3e-38 3.9e-36 479 709 .. 140 370 .. 129 372 .. 0.89
Alignments for each domain:
== domain 1 score: 122.5 bits; conditional E-value: 5.3e-38
TIGR00958 479 veFqdVsFsY.PsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEP..vlfsgsvre 573
+e ++ sF Y P+ p+ + d +ft++ Ge v+++G +GsGKSt+ +l + + G++ + g+ +++ + + ++ +++V q P + + +v
MMSYN1_0643 140 IEINHLSFKYgPEFPNA--IDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQARKFLGIVFQNPdnQFIGSTVEA 235
89999*****6677764..7*******************************************************************666788899** PP
TIGR00958 574 NiaYGltkte.deevtaaakaanahdFiselek..gydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaks 664
ia+Gl+++ d + + d i + k g++ + ++ lsgGqkqr+AiA L +P ++i DeAtS LD e+++++ + ++++
MMSYN1_0643 236 DIAFGLENKRiDPK--------KMPDIILDSAKkvGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPkgkrEIKEIMVQLRETRT 325
******99874332........2344554444411567778888999********************************999999999999******* PP
TIGR00958 665 rtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykq 709
+t+l+i+h + + +adk++vl +g++v++ + +++e++d +++
MMSYN1_0643 326 KTILSITHDMDEILNADKVIVLDHGKLVRVAKPLEIVEDKDFLRN 370
**************************************9998775 PP
>> TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 120.6 0.5 2e-37 1.5e-35 3 237 .. 142 364 .. 140 372 .. 0.89
Alignments for each domain:
== domain 1 score: 120.6 bits; conditional E-value: 2e-37
TIGR03005 3 isdvtkrfge.l.tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsf.n 97
i++++ ++g + + +d++++++++Ge v++iG GsGksti +il+ + + ++G+ik+ g+++ +++ +++ r+ +G+vfq+ n
MMSYN1_0643 142 INHLSFKYGPeFpNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIV-------------NDHNIEQARKFLGIVFQNPdN 226
5566666654222689*******************************************55443.............45668999*********8537 PP
TIGR03005 98 lfphktvldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlase 195
f tv +++ + k + + + + ++ + vG+ ++ p +lsGGqkqrvaia +lal p +++fde+ts ldp+ e+ +++ +l +
MMSYN1_0643 227 QFIGSTVEADIAF-GLENKRIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRET 323
8888888777765.68999999999************************************************************************* PP
TIGR03005 196 tdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237
+ t+l +th+m + ad+v+ +d+Gk+v kp ei ++
MMSYN1_0643 324 RTKTILSITHDMDEILN-ADKVIVLDHGKLVRVAKPLEIVED 364
************98775.9******************99876 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 122.0 0.0 1.1e-37 8.1e-36 307 529 .] 125 347 .. 85 347 .. 0.84
Alignments for each domain:
== domain 1 score: 122.0 bits; conditional E-value: 1.1e-37
TIGR02857 307 peaekapltaaassslelenvsvay.egrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQ 403
+ ++ +l++ +++++e++ +s++y ++ +a+++vs+t+++ge v ++G+ G+GKst+ k+l g++++++G+i++ g+ +++ + ++ rk ++ v Q
MMSYN1_0643 125 GQGKSIKLEKLSDIAIEINHLSFKYgPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQARKFLGIVFQ 222
223333444555559**********77777**********************************************9999****************** PP
TIGR02857 404 kP..llfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevle 499
+P +++ tv ++i+++ ++ + + + + ld+ a + g+e + +++ +LSgGq+qR+a+A l+ d +++++DE t+ LD++ + e++e
MMSYN1_0643 223 NPdnQFIGSTVEADIAFGLENKRID--PKKMPDIILDS---AKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKE 315
*977799*********987766555..34455555544...55669999************************************************* PP
TIGR02857 500 alrela..egrtvllvaHrlalaeladkivvl 529
++ +l +++t+l ++H+ + +adk++vl
MMSYN1_0643 316 IMVQLRetRTKTILSITHDMDEILNADKVIVL 347
*****9444567899**************986 PP
>> TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 113.8 0.7 2.8e-35 2.1e-33 1 208 [. 157 367 .. 157 388 .. 0.88
Alignments for each domain:
== domain 1 score: 113.8 bits; conditional E-value: 2.8e-35
TIGR01184 1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrm.....vvfqny.sllpwltvrenialavdavlrdlskserr 92
++dv+++i++ge++++igh g gkst+ ++ g+ + +g +++ g+ +++ ++ +vfqn + tv +ia+ +++ + d + +
MMSYN1_0643 157 IDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQArkflgIVFQNPdNQFIGSTVEADIAFGLENKRIDPK--KMP 252
689***************************************999998887766543223448****625688899******99997666654..567 PP
TIGR01184 93 eiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltn 190
+i+ + + vg++ a +k+p +lsgg kqrvaia +l++ p+++++de ld + e++e ++++ e ++ t+l +thd+de +l +d+v++l
MMSYN1_0643 253 DIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDMDE-ILNADKVIVLDH 349
899999******************************************************************************9.568********* PP
TIGR01184 191 gpaakigeilevplerpr 208
g ++ + le+ ++
MMSYN1_0643 350 GKLVRVAKPLEIVEDKDF 367
**9999999998766655 PP
>> TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.5 1.7 0.1 7.3 242 318 .. 40 120 .. 4 124 .. 0.70
2 ! 111.5 0.1 1.3e-34 9.9e-33 1 191 [. 172 364 .. 172 384 .. 0.94
Alignments for each domain:
== domain 1 score: 3.5 bits; conditional E-value: 0.1
TIGR01187 242 klqvvlrPekis.ieevaeansseavigevrditykGetlevavrledggk...elvsevlnedesekdlslgdkvlltwe 318
++ ++r ++i+ ie+ + +++++ v++e+++i+ + ++ +++l ++ +l +++ + ++ +++ ++ +++ll+++
MMSYN1_0643 40 QYINLIRQDNIDkIEKQNIRQQQKQVKAEIKKISATTKLFKQNLKLAESLYkkiKLTNNQNDINKAKQEVEIAKSMLLQLK 120
444578889996255666688889**********************98855112333333333344444777777777765 PP
== domain 2 score: 111.5 bits; conditional E-value: 1.3e-34
TIGR01187 1 lLGpsGsGkttlLrllaGleeldsGkilldgedvt..evpaekrsvnvvfqsy.aLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefak 95
++G GsGk+t+ ++l G+ + ++G+i++ g+ v ++ ++ +++vfq+ f tve+++afgL ++++ +++ + + + + v +e k
MMSYN1_0643 172 IIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNdhNIEQARKFLGIVFQNPdNQFIGSTVEADIAFGLENKRIDPKKMPDIILDSAKKVGMEWALK 269
6899************************999988721455667889*****96368****************************************** PP
TIGR01187 96 rkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyee 191
++p +lsGGq+qrva+a +++ P+i+++De+ s LD k + ++++ +++l+e t++ +thD +e l +d++ vl +Gk++++++p ei e+
MMSYN1_0643 270 KEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDMDEILN-ADKVIVLDHGKLVRVAKPLEIVED 364
********************************************************************885.9*******************9886 PP
>> TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 113.3 0.0 4.2e-35 3.1e-33 16 232 .. 146 355 .. 131 373 .. 0.90
Alignments for each domain:
== domain 1 score: 113.3 bits; conditional E-value: 4.2e-35
TIGR02769 16 gllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiige 113
++ + + +d+vs+++++Ge v+++G+ G+Gkst++++l+G+ + ++Ge++ G+ + + +q+++f + +vfq+ + ++v++ i+
MMSYN1_0643 146 SFKYGPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQARKF---LGIVFQNPDNQFI-GSTVEADIAF 239
5555556667899***********************************************99999999888...89****9888875.689******* PP
TIGR02769 114 PlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdl 211
l++ +++d + + i + ++v+++ l+k P +lsGGq qr++ia +la++P ++++dea s ld + +i e++ +l++ ++l ithd+
MMSYN1_0643 240 GLEN-KRIDPKKMPDIILDSAKKVGMEW-ALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDM 335
**98.689*****************975.799****************************************************************** PP
TIGR02769 212 rlvqkfaqrvlvldeGqivee 232
+ + a++v+vld+G++v
MMSYN1_0643 336 DEILN-ADKVIVLDHGKLVRV 355
99876.8***********975 PP
>> TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.7 2.7 0.81 59 221 277 .. 52 110 .. 8 140 .. 0.55
2 ! 110.8 0.6 2.4e-34 1.7e-32 7 213 .. 155 363 .. 148 406 .. 0.79
Alignments for each domain:
== domain 1 score: 0.7 bits; conditional E-value: 0.81
TIGR01188 221 everrdikelkkevsllaaeltesll.eleavevdsd.kvklkveeadetvkeileavk 277
++e+++i++ +k+v++ ++++ +++ +++++++ +k+k +++++ ++++ ++v+
MMSYN1_0643 52 KIEKQNIRQQQKQVKAEIKKISATTKlFKQNLKLAESlYKKIKLTNNQNDINKAKQEVE 110
33444444444444444444444444222222222211223333333333333333222 PP
== domain 2 score: 110.8 bits; conditional E-value: 2.4e-34
TIGR01188 7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvv.repdevRrsigvvpqkasvdedL.tarenlellgelyglpkkeae 102
+A+d+v++ +++ge + ++G nG GK+t+ k+L ++l+ + G+ +++G v ++ +++R+ +g+v+q+ + t + ++ + e + k++
MMSYN1_0643 155 NAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNdHNIEQARKFLGIVFQNPDNQFIGsTVEADIAFGLENKRIDPKKMP 252
69**********************************************755423456***********865443330333333333333334444444 PP
TIGR01188 103 eraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidk 199
+ + + + v + a +k+ ++sgG+++r+ +a +l +P+++ DE t+ LDp+ +r+i++++ +l+++ +til th+++e+ ad+v+++d+
MMSYN1_0643 253 DIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETrTKTILSITHDMDEIL-NADKVIVLDH 349
44555558999**********************************************************99899***********95.69******** PP
TIGR01188 200 GkiiaedtpeeLKe 213
Gk++ p e+ e
MMSYN1_0643 350 GKLVRVAKPLEIVE 363
****9988877654 PP
>> TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 108.4 0.1 1.2e-33 8.8e-32 11 223 .. 147 356 .. 134 370 .. 0.91
Alignments for each domain:
== domain 1 score: 108.4 bits; conditional E-value: 1.2e-33
TIGR02314 11 fdqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqh.fnllssrtvfgnvalpl 107
f+ g +a+d+vs+ + +g+ + +ig g+gkst+ + + + + +g++ + g+ +++ ++ +ar+ +g++fq n + tv ++a+ l
MMSYN1_0643 147 FKYGPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGN---IVNDHNIEQARKFLGIVFQNpDNQFIGSTVEADIAFGL 241
5566666689*****************************9888888999****9997...46788999***********835889999********** PP
TIGR02314 108 elentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvk 205
e + +k+ + + vg+ + p nlsggqkqrvaia +la +p +++ deats ldp + i e++ ++ + + til ith+md +
MMSYN1_0643 242 ENKRIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDMDEIL 339
*****99*****************999999*****************************************************************997 PP
TIGR02314 206 ricdevavidkgeliekg 223
+ d+v v+d+g+l+
MMSYN1_0643 340 N-ADKVIVLDHGKLVRVA 356
6.79**********9755 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.6 0.2 5.6 4.1e+02 94 133 .. 88 126 .. 75 135 .. 0.61
2 ! 107.9 0.0 1.6e-33 1.2e-31 17 210 .. 160 355 .. 140 358 .. 0.91
Alignments for each domain:
== domain 1 score: -1.6 bits; conditional E-value: 5.6
TIGR01277 94 GlkpglklnavqkekvedvarqvGiadylerlpeelsGGq 133
l +kl+ +++ ++++ ++v ia+ + +e+ Gq
MMSYN1_0643 88 SLYKKIKLTN-NQNDINKAKQEVEIAKSMLLQLKEVINGQ 126
4566677765.45678888888888876544444444444 PP
== domain 2 score: 107.9 bits; conditional E-value: 1.6e-33
TIGR01277 17 fdlsveaGervailGesGaGkstllnliaGflepasGeikv..ndkdhtrsapyerpvsmlfqe.nnlfahltvrqniglGlkpglklnavqkekved 111
++++++Ge v+i+G+ G+Gkst+ +++ G l+ +Geik+ n ++ + ++ + ++fq+ +n f tv+ +i++Gl+ + + + d
MMSYN1_0643 160 VSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIfgNIVNDHNIEQARKFLGIVFQNpDNQFIGSTVEADIAFGLENKRIDPKKMPDIILD 257
57899***********************************944445667778889999*****8589***************987665666678889* PP
TIGR01277 112 varqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
a++vG++ l++ p +lsGGq+qrva+a l + i+++de s ldpk ++e+ ++ +l + + +t+l +th+++++ a++v+v+++Gk+
MMSYN1_0643 258 SAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDMDEIL-NADKVIVLDHGKLVR 354
*****************************************************************************99876.68**********876 PP
TIGR01277 210 l 210
+
MMSYN1_0643 355 V 355
6 PP
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.1 0.1 6.6e-34 4.9e-32 2 215 .. 157 363 .. 156 369 .. 0.93
Alignments for each domain:
== domain 1 score: 109.1 bits; conditional E-value: 6.6e-34
TIGR02770 2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrg..reialilqnPrsafnPlltikeqlletlkaleklsk 97
++dv++++++g+ ++++G+ GsGks+ ++ ++g+l+ + +Gei + g+ +++ ++ + + +++++qnP + f t++ + l+ ++ k
MMSYN1_0643 157 IDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLN----AQHGEIKIFGNIVNDHNIEQarKFLGIVFQNPDNQFIG-STVEADIAFGLENKRIDPK 249
789********************************9....678***********997766215589**********87.6899999999999888889 PP
TIGR02770 98 qakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaelade 195
+ ++i+++ ++vg+e lkk p +lsGG qRv ia +l+l++ ++i De t+ lD + + e+ + + +lre+r +il ithD+ + + ad+
MMSYN1_0643 250 KMPDIILDSAKKVGME---WALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDMDEILN-ADK 343
9999**********99...78*********************************************************************9975.9** PP
TIGR02770 196 vavmekGkivergtvkelfq 215
v+v+++Gk+v +++ e+++
MMSYN1_0643 344 VIVLDHGKLVRVAKPLEIVE 363
**********9998888765 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 107.4 0.0 2.9e-33 2.1e-31 15 226 .. 159 368 .. 147 397 .. 0.90
Alignments for each domain:
== domain 1 score: 107.4 bits; conditional E-value: 2.9e-33
TIGR02142 15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeA.rLFpHlsvrenLrYGlkraraeerris 111
dv+++++ + +++ G+ GsGk+++ +++ G++++++gei++ g++++d + ++ +g+vFq+ + F +v ++ +Gl++ r + +++
MMSYN1_0643 159 DVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNI----EQARKFLGIVFQNPdNQFIGSTVEADIAFGLENKRIDPKKM- 251
8999**999***************************************9865....788999******96368**************9888877544. PP
TIGR02142 112 eekvi...elLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvle 206
+ ++ + +g+e l+++p +LsGG kqRvai+ l +P+++++De + LD k k+ei + +l++ + il + H++de++ ad+v+vl+
MMSYN1_0643 252 PDIILdsaKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDMDEILN-ADKVIVLD 348
45554222568****************************************************************************87.9******* PP
TIGR02142 207 dGrvkaagkleevlaskdls 226
+G++ +k+ e++++kd+
MMSYN1_0643 349 HGKLVRVAKPLEIVEDKDFL 368
*****999999999999764 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 106.7 0.1 4e-33 2.9e-31 2 215 .. 141 357 .. 140 370 .. 0.89
Alignments for each domain:
== domain 1 score: 106.7 bits; conditional E-value: 4e-33
TIGR03410 2 evenlevaYges..evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqG.reifpkltveenl 96
e+++l+ +Yg +++ dvs+++++ge v+++G+ng Gk+t+ k l+g+l++++Gei++ g+ ++++ e++++ ++ v q + f tve ++
MMSYN1_0643 141 EINHLSFKYGPEfpNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDH-NIEQARKFLGIVFQNpDNQFIGSTVEADI 237
6888999998643389**********************************************877655.56778888888888624578889****** PP
TIGR03410 97 elglealkkkekkipeeiyelFPv..lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvl 192
gle+++ + kk+p+ i++ ++ lk++ +LsGGq+q +aia +L+ +P +++ De t + P +ei++++ +l++++ +il + + +
MMSYN1_0643 238 AFGLENKRIDPKKMPDIILDSAKKvgMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDM 335
*******************98754124556788999************************************************************** PP
TIGR03410 193 dfaleladrylvlerGevvaege 215
d l+ ad+++vl++G++v +
MMSYN1_0643 336 DEILN-ADKVIVLDHGKLVRVAK 357
*9999.9**********998665 PP
>> TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.2 0.7 0.16 12 112 150 .. 56 91 .. 31 129 .. 0.76
2 ! 106.8 2.1 4.7e-33 3.4e-31 2 222 .. 139 364 .. 138 405 .. 0.86
Alignments for each domain:
== domain 1 score: 3.2 bits; conditional E-value: 0.16
TIGR03522 112 krveelielvGlkaeqhkkigalskGyrqrvGlakallh 150
+++++ + ++ + kki+a +k ++q la++l
MMSYN1_0643 56 QNIRQQQK---QVKAEIKKISATTKLFKQNLKLAESLYK 91
33333222...2345679999999999999999998865 PP
== domain 2 score: 106.8 bits; conditional E-value: 4.7e-33
TIGR03522 2 svevsdlsklygkq..kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsle.vrkniGylPehnP..lyldlyvre 94
++e+++ls +yg + +a+d+vsf++++Ge v +G nG+Gkst+ kil g l+a+ G +++ g+ v ++++e +rk++G + + nP ++ v
MMSYN1_0643 139 AIEINHLSFKYGPEfpNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEqARKFLGIVFQ-NPdnQFIGSTVEA 235
68999******987669*************************************************998777537889998754.4422688999*** PP
TIGR03522 95 ylefsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei..akdktvilsth 190
++f + +++ +k+ + + + ++vG++ k +ls G +qrv +a +l dP+++i+de t+ ldP ei+e++ ++ ++ kt++ th
MMSYN1_0643 236 DIAFGLENKRIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLreTRTKTILSITH 333
**********************************************************************************99944567999999** PP
TIGR03522 191 imqevealcdrviiinkGkivadkkleelkaa 222
m e+ d+vi++++Gk+v k e+++
MMSYN1_0643 334 DMDEILN-ADKVIVLDHGKLVRVAKPLEIVED 364
****975.7***********987665555333 PP
>> TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 105.0 1.8 1.1e-32 8.4e-31 306 539 .. 128 360 .. 51 364 .. 0.84
Alignments for each domain:
== domain 1 score: 105.0 bits; conditional E-value: 1.1e-32
TIGR01842 306 ealklPep.egelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPq..d 400
+++kl + + +e++++s+ e + + ++sf++++Ge ++iiG gsGks++ ++l+Gv + ++G++++ g ++ ++ e+ k++G + q d
MMSYN1_0643 128 KSIKLEKLsDIAIEINHLSFKYGPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQARKFLGIVFQnpD 225
44555553145678888888888888899**************************************************************9999445 PP
TIGR01842 401 veLfeGtvaeniaRfeenadaekvieaaklagvhelilrl..pkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalaka 496
+ + tv+++ia e +k i+ k+ + +il G + ++ ++ +LsgGq+qR+a+a l dP +++ De + LD +G + +
MMSYN1_0643 226 NQFIGSTVEADIAFGLE----NKRIDPKKMPD---IILDSakKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEI 316
6788889999**95444....45567777665...55544115699**************************************************** PP
TIGR01842 497 lkelkark.itvvvithrpsllelvdkilvlkdGalkafGeree 539
+++l++ + t++ ith + + +dk++vl++G+l + + e
MMSYN1_0643 317 MVQLRETRtKTILSITHDMDEILNADKVIVLDHGKLVRVAKPLE 360
****9866156778*********************988776655 PP
>> TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.5 0.2 9.5 7e+02 205 216 .. 86 97 .. 50 124 .. 0.57
2 ! 104.6 0.2 1.7e-32 1.2e-30 17 220 .. 153 353 .. 139 354 .. 0.91
Alignments for each domain:
== domain 1 score: -2.5 bits; conditional E-value: 9.5
TIGR02211 205 akkldrvlelkd 216
a+ l ++++l++
MMSYN1_0643 86 AESLYKKIKLTN 97
222222222222 PP
== domain 2 score: 104.6 bits; conditional E-value: 1.7e-32
TIGR02211 17 eievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfh.hlladftalenvamPlliskk 113
+ +++vs+ i++ge v+i+G+ GsGkst+ +l g+ ++ +Ge+++ G+ ++ + ++ r k lG ++q + t+ ++a+ l ++
MMSYN1_0643 153 FPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQA---R-KFLGIVFQNPdNQFIGSTVEADIAFGLENKRI 246
556789********************************************98776554443...3.67******85156778888889***9999999 PP
TIGR02211 114 skkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrv 211
+ k+ ++ + +kvg+e ++k+p +lsGG++qrvaia +l +P++++ de t+ ld k ++i e++ +l++++ ++l +thd++ + ++d+v
MMSYN1_0643 247 DPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDMDEILNADKV 344
9999999999**************************************************************************************** PP
TIGR02211 212 lelkdgkla 220
+ l +gkl+
MMSYN1_0643 345 IVLDHGKLV 353
******996 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 102.2 0.0 8.6e-32 6.3e-30 1 226 [. 136 365 .. 136 374 .. 0.87
Alignments for each domain:
== domain 1 score: 102.2 bits; conditional E-value: 8.6e-32
TIGR01288 1 sdvaidlvgvsksygdkv..vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldref..t 93
sd+ai++ +s yg ++d+sfti +ge ++g ng+gksti+++++g+ + ++g+i ++g+ v ++ ar +g+v q d++f +
MMSYN1_0643 136 SDIAIEINHLSFKYGPEFpnAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDhNIEQARKFLGIVFQN--PDNQFigS 231
799************9864489*********************************************9987526899********664..45555224 PP
TIGR01288 94 vrenllvfgr.yfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsll.argktil 189
+ e + fg +++ +++ ++i + +e + + +lsgg k+r+++a++l dp+++i+de t+ ldp+ + i e + l +r ktil
MMSYN1_0643 232 TVEADIAFGLeNKRIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLReTRTKTIL 329
556667777515678888888888777777889999999999******************************************998885379***** PP
TIGR01288 190 ltthlmeeaerlcdrlcvleagrkiaegrpdalideq 226
th m+e d++ vl++g+ + +p +++++
MMSYN1_0643 330 SITHDMDEIL-NADKVIVLDHGKLVRVAKPLEIVEDK 365
*******986.48***********9999999988875 PP
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.2 3.3 7 5.2e+02 64 116 .. 48 104 .. 25 136 .. 0.54
2 ! 102.7 1.7 6.4e-32 4.7e-30 2 236 .. 140 364 .. 139 371 .. 0.87
Alignments for each domain:
== domain 1 score: -2.2 bits; conditional E-value: 7
TIGR02315 64 kevtklkkkelr....klrkkigmifqeynlierltvlenvLsgrlgakstlksllg 116
++ k++k+++r +++++i i+ +l +++ l+ L ++ +++ + + +
MMSYN1_0643 48 DNIDKIEKQNIRqqqkQVKAEIKKISATTKLFKQNLKLAESLYKKIKLTNNQNDINK 104
334444443333000045555556666666666666666666666666555555544 PP
== domain 2 score: 102.7 bits; conditional E-value: 6.4e-32
TIGR02315 2 levenlskvypng.kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvle 98
+e+++ls +y+ + +a+++v+++i++Ge v++iG+ G+Gkst+ + + ++ + ++g+i++ g+ v+ +++++++rk +g++fq+ ++ + +
MMSYN1_0643 140 IEINHLSFKYGPEfPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVN---DHNIEQARKFLGIVFQNPDN----QFIG 230
7899999999755269**********************************************99877...7899************9654....3344 PP
TIGR02315 99 nvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekg 196
+ + +++ k ++ +++ + l++ ++vg++ +k +LsGGq+qRvaia +la +p++++ DE ++ LDpk +++ +++ ++ + +
MMSYN1_0643 231 STVEADIAFGLENK---RIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRT 325
44444444433333...2335667788999******************************************************************** PP
TIGR02315 197 itvivnlHqvdlakkyadrivglkageivfdgasseldde 236
t++ H++d + ad+++ l +g++v +++ e+ ++
MMSYN1_0643 326 KTILSITHDMDEILN-ADKVIVLDHGKLVRVAKPLEIVED 364
***********9876.9************99998887554 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.7 0.0 2.5e-31 1.9e-29 327 529 .. 132 334 .. 91 335 .. 0.81
Alignments for each domain:
== domain 1 score: 100.7 bits; conditional E-value: 2.5e-31
TIGR02868 327 aaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqda..HlF 421
++ ++ +e+++ls++y + + ++++vs+++++Ge v+++G G+GKst+ ++l+g+l++++Ge+ + g v + + ++ r+ ++ q++
MMSYN1_0643 132 LEKLSDIAIEINHLSFKYGPEFPnAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQARKFLGIVFQNPdnQFI 229
23336799**********999888***********************************************999999999999998877776622688 PP
TIGR02868 422 dttvreNlrlarpda..tdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaa 517
+tv + ++ ++ + + + + + L + + G++ l+++ lSGG++qR+a+A +L d ++++ DE t LD++ ++e+ e +++
MMSYN1_0643 230 GSTVEADIAFGLENKriDPKKMPD----IILDSAKK---VGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQL 320
9**********9886334555554....44655555...5*******************************************************976 PP
TIGR02868 518 eegrt..vvlvthr 529
e rt ++ +th+
MMSYN1_0643 321 RETRTktILSITHD 334
6665554999***7 PP
>> TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.3 2.4 1.3 93 294 368 .. 23 103 .. 7 137 .. 0.62
2 ! 100.1 0.4 4e-31 3e-29 40 255 .. 157 364 .. 154 394 .. 0.89
Alignments for each domain:
== domain 1 score: -0.3 bits; conditional E-value: 1.3
TIGR03415 294 vlskrkdtylekad.....kqveeaaaklalaataaeqeveslekasllvkpdt.slrevleilkktaeavllvenerivG 368
++++ ++++++ +d ++ ++++ ++++ + q++++++++ ++++t +++ l++ ++ +++ l++n++ +
MMSYN1_0643 23 TITSLNNYFVKLNDlnnqyINLIRQDNIDKIEKQNIRQQQKQVKAEIKKISATTkLFKQNLKLAESLYKKIKLTNNQNDIN 103
445555555555555444445556666666766666666666666655554444045667777777777777777765443 PP
== domain 2 score: 100.1 bits; conditional E-value: 4e-31
TIGR03415 40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkf.allPWrtveenvafGlelsGv 136
++d+s+++++Ge + ++G GsGks++ + + g+ G++++ + v+ ++++a r k + +vfq+ + tve ++afGle + +
MMSYN1_0643 157 IDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFG--NIVNDHNIEQA--R----KFLGIVFQNPdNQFIGSTVEADIAFGLENKRI 246
789************************9999998888999888864..45555554443..3....4689****862456789*************** PP
TIGR03415 137 akaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnr 234
++ + + + + vg++ +k + +lsGG +qrv +a +a++ di++ de s ldP + ++++ +++l+++ kti+ ++hd+de l ++
MMSYN1_0643 247 DPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDMDEILNA-DK 343
*****************9755678899******************************************************************96.67 PP
TIGR03415 235 iaimegGrivqlgtpeeivlk 255
+ +++ G++v++ +p eiv +
MMSYN1_0643 344 VIVLDHGKLVRVAKPLEIVED 364
8899**************975 PP
>> TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 0.6 4.8 3.5e+02 84 98 .. 75 90 .. 38 128 .. 0.45
2 ! 99.7 0.8 4.8e-31 3.5e-29 14 227 .. 154 366 .. 139 377 .. 0.88
Alignments for each domain:
== domain 1 score: -1.8 bits; conditional E-value: 4.8
TIGR04406 84 easifrk.ltveenlk 98
+ +f++ l ++e l
MMSYN1_0643 75 TTKLFKQnLKLAESLY 90
3333321122222222 PP
== domain 2 score: 99.7 bits; conditional E-value: 4.8e-31
TIGR04406 14 rkvvkdvslevksgeivGllGPnGaGkttsfymivGlvkadaGkvllddeditklplherarlGigylpqea.sifrkltveenlkavlelredldke 110
+ ++dvs+++++ge v ++G nG+Gk+t +++G+++a++G++++ ++ +++ ++++ ar +g + q++ f tve ++ le ++ +d +
MMSYN1_0643 154 PNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQ-ARKFLGIVFQNPdNQFIGSTVEADIAFGLENKR-IDPK 249
4789**********************************************999999964.5555555555542469999***********988.7999 PP
TIGR04406 111 ereekleelleeleiahlrekkaaslsGGerrrveiaralaaePkfilldePfagvdPiavsdikklikllke.rgiGvlitdhnvretldivdrayi 207
+ + + + +++ ++ +k+ +lsGG+++rv ia +la +P+++++de + +dP +ik+++ +l+e r +l h++ e+l+ +d+ +
MMSYN1_0643 250 KMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLREtRTKTILSITHDMDEILN-ADKVIV 346
999999999**************************************************************983667899999******98.7***** PP
TIGR04406 208 vseGkvlaeGsaeeivanek 227
+ +Gk++ ++ eiv++++
MMSYN1_0643 347 LDHGKLVRVAKPLEIVEDKD 366
****************9986 PP
>> TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 95.6 3.3 7.9e-30 5.8e-28 296 518 .. 153 364 .. 36 368 .. 0.76
Alignments for each domain:
== domain 1 score: 95.6 bits; conditional E-value: 7.9e-30
TIGR03269 296 vvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenltea.igl 392
+a+d+vs++++++e ++G G+Gk+t+skil+Gvl+ +Ge+++ G + v+ + +a+k++G+++q+ + ++ ++ ea i++
MMSYN1_0643 153 FPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIF-G-NIVND---H--NIEQARKFLGIVFQNPD----NQFIGSTVEAdIAF 239
5579****************************************98763.4.44433...2..334689********954....44444433332444 PP
TIGR03269 393 elpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdf 490
l ++ k + + ++ + l+k p +ls G++ rva+a l +p i+i+de t +dp k++++e +++ re +t + ++hdmd
MMSYN1_0643 240 GLENKRIDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDMDE 337
4444444444443333333445556678********************************************************************** PP
TIGR03269 491 vlevcdraalmrdGkivkiGdpeeivee 518
+l+ d++ ++ +Gk+v++ +p eive+
MMSYN1_0643 338 ILN-ADKVIVLDHGKLVRVAKPLEIVED 364
*99.6********************986 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 94.7 0.9 1.6e-29 1.2e-27 311 557 .. 118 362 .. 97 388 .. 0.84
Alignments for each domain:
== domain 1 score: 94.7 bits; conditional E-value: 1.6e-29
TIGR01192 311 dledsvkereepadarelknvkgavefrdisfef.anssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtresl 407
+l++ ++ + + ++++l+++ a+e++++sf++ ++ + + dvsf++ g+ v+i+g g+gk+t+ +l v + ++g+i i g ++ + e
MMSYN1_0643 118 QLKEVINGQGKSIKLEKLSDI--AIEINHLSFKYgPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQA 213
555556666666667777776..56777788877345567899******************************************************* PP
TIGR01192 408 rksiatvfq..dagllnrsirenirlgredatdeevveaakaaaasdfiekrlk..gydtlvgergnrlsggerqrlaiarailknapilvldeatsa 501
rk + vfq d ++ ++ +i +g e+ + d+i + k g + + + +lsgg++qr+aia ++ + i+++deats
MMSYN1_0643 214 RKFLGIVFQnpDNQFIGSTVEADIAFGLENKRIDP-------KKMPDIILDSAKkvGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSM 304
*********66688999**********99866543.......34457776655411566777788889****************************** PP
TIGR01192 502 ldvetearvkdaidalrknrttfi..iahrlstvreadlvlfldqgrliekgsfdeli 557
ld + + +k+ + lr+ rt i i+h + + +ad v+ ld g+l+ e++
MMSYN1_0643 305 LDPKGKREIKEIMVQLRETRTKTIlsITHDMDEILNADKVIVLDHGKLVRVAKPLEIV 362
******************9987664489********************9877665555 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.5 0.0 2.2e-26 1.6e-24 4 225 .. 142 362 .. 139 372 .. 0.84
Alignments for each domain:
== domain 1 score: 84.5 bits; conditional E-value: 2.2e-26
TIGR03873 4 lsrvsvraggr..livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdae.vplsvrdvval 98
++++s++ g +ddv t +G+ +++G nGsGkst+ ++l G+l++++Ge+++ g+ ++ + + + + +v q+ d++ + +v +a+
MMSYN1_0643 142 INHLSFKYGPEfpNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQARKFLGIVFQNPDNQfIGSTVEADIAF 239
6666776665422479*********************************************9888877766666688898988877245677777999 PP
TIGR03873 99 GriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvv.alh 195
G r d+++ +++ +v+++ +++ lsGG++qrv +a +la +P ++++de t ld + + e+ +++ +l ++++ +++ h
MMSYN1_0643 240 GLENKR----IDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILsITH 333
976665....6777777888889999***99999999********************************************99999888765550569 PP
TIGR03873 196 dlnlaasvcdhvvvldgGrvvaaGppaevl 225
d++ +d+v+vld+G++v +p e++
MMSYN1_0643 334 DMDEI-LNADKVIVLDHGKLVRVAKPLEIV 362
99875.579************999998876 PP
>> TIGR01978 sufC: FeS assembly ATPase SufC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.4 0.3 8.5 6.2e+02 103 103 .. 84 84 .. 41 129 .. 0.51
2 ! 83.3 1.7 5.5e-26 4e-24 14 226 .. 155 355 .. 134 375 .. 0.87
Alignments for each domain:
== domain 1 score: -2.4 bits; conditional E-value: 8.5
TIGR01978 103 n 103
+
MMSYN1_0643 84 K 84
1 PP
== domain 2 score: 83.3 bits; conditional E-value: 5.5e-26
TIGR01978 14 eiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrka.rg 110
+ +++++ ++++Ge + i+G nGsGkst+sk+l+g + ++Geik+ g+ +++ ++ e+ar+ l + fq+p + +f+ s+++a + +
MMSYN1_0643 155 NAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVL--NAQHGEIKIFGNIVNDHNI-EQARKFLGIVFQNPDN-------QFIGSTVEADIAFgLE 242
56789******************************75..568********99999877.789***********74.......6666666665543134 PP
TIGR01978 111 eeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerll 207
++++d ++ + + ++++++ ++ +l + ln sGG k+r i + l+P+++i De+ s lD + + + e + +lre+ +k++l ith +
MMSYN1_0643 243 NKRIDPKKMPDIILDSAKKVGMEWALKKEPLN--LSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETrTKTILSITHD--MD 336
45599999999********************9..6*********************************************99967888899996..77 PP
TIGR01978 208 elikPdvvhvlldGrivks 226
e ++ d+v vl +G++v+
MMSYN1_0643 337 EILNADKVIVLDHGKLVRV 355
9999************985 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.7 0.7 3 2.2e+02 115 144 .. 60 89 .. 32 127 .. 0.65
2 ! 81.1 1.3 3e-25 2.2e-23 16 225 .. 155 357 .. 138 374 .. 0.86
Alignments for each domain:
== domain 1 score: -0.7 bits; conditional E-value: 3
TIGR03411 115 rlskeekerieevleligLeekadkkaglL 144
+++k++k++i+++ ++++L +++ k a +L
MMSYN1_0643 60 QQQKQVKAEIKKISATTKLFKQNLKLAESL 89
344455556666666666655555555544 PP
== domain 2 score: 81.1 bits; conditional E-value: 3e-25
TIGR03411 16 kalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkps.vfeeltvlenlelalkadksvlall 112
+a++d+s+++++ge +iiG nG+Gk+t+ +++G ++++G++++ g+ +++ ++ e ar+ +g fq+p f tv ++ l++++ + +
MMSYN1_0643 155 NAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGN-IVNDHNIEQARKFLGIVFQNPDnQFIGSTVEADIAFGLENKRIDPKKM 251
79*******************************************9985.7777778889999*******9637999999999999998877655544 PP
TIGR03411 113 farlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelake..rsvvvvehDmefvrel 208
+ i + ++ +g+e +k+ +Ls Gqkq++ i+ l+ +p++++ De ++ + + ++++ e++ +l+++ ++++ + hDm+ + +
MMSYN1_0643 252 --------PDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETrtKTILSITHDMDEILN- 340
........678999999************************************************************8751167999******9987. PP
TIGR03411 209 aekvtvlheGkvlaeGs 225
a+kv vl +Gk++ +
MMSYN1_0643 341 ADKVIVLDHGKLVRVAK 357
67899*****9876554 PP
>> TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.0 2.1 3.8 2.8e+02 95 146 .. 48 96 .. 8 150 .. 0.55
2 ! 79.9 2.8 6.7e-25 4.9e-23 3 203 .. 142 353 .. 140 375 .. 0.83
Alignments for each domain:
== domain 1 score: -1.0 bits; conditional E-value: 3.8
TIGR03740 95 tlllglpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkll 146
+ ++++++i + k v+ e kk + + kq l +a +l +k kl
MMSYN1_0643 48 DNIDKIEKQNIRQQQKQVKA---EIKKISATTKLFKQNLKLAESLYKKIKLT 96
33444444444444444432...22333333344677777777777766664 PP
== domain 2 score: 79.9 bits; conditional E-value: 6.7e-25
TIGR03740 3 tknlskkfkkq..avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkk....iGsliesPa.lyenltarenlkv 93
+++ls k++ + +++++vs+++++ + +++G nG+Gkst+ k+l G+l+ + Gei++ g+ ++ +++++ +G + ++P + t + ++
MMSYN1_0643 142 INHLSFKYGPEfpNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQarkfLGIVFQNPDnQFIGSTVEADIAF 239
5666666665433799*****************************************99998888777765333379999999624666777788888 PP
TIGR03740 94 rtlllglpesrieevl....kivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvils.shilse 186
++ ++ +++ +++ k+v++e kk+ ++s G kqr+ ia +l +P+++i+de t ldP G +e++e++ ++e + ils +h + e
MMSYN1_0643 240 GLENKRIDPKKMPDIIldsaKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSiTHDMDE 337
8888888888776654344489********************************************************99999888777774799999 PP
TIGR03740 187 velladhiGiiseGklk 203
+ ad++ ++ +Gkl
MMSYN1_0643 338 IL-NADKVIVLDHGKLV 353
95.59999999999986 PP
>> TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.7 0.0 1.1e-24 8e-23 356 549 .. 156 354 .. 110 358 .. 0.88
Alignments for each domain:
== domain 1 score: 78.7 bits; conditional E-value: 1.1e-24
TIGR01194 356 alGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfa..dyylfddlvqpdek...kqasldqattyl 448
a+ + ++i++Ge v i+G nG Gkst+ k+l+G+ q+Ge+ + G+ v d+ ++ r+++ vf d + v+ d ++ +d +
MMSYN1_0643 156 AIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQARKFLGIVFQnpDNQFIGSTVEADIAfglENKRIDPKKMPD 253
6677899***********************************************************74478888999998854223666777777777 PP
TIGR01194 449 srleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGk 546
l+ ++kv +e +ls Gq++r+a+ ++ + ++++de ++ dp kr e ++ r ktil i+hd ad++i l Gk
MMSYN1_0643 254 IILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDMDEILNADKVIVLDHGK 351
78999999999988888899**************************************9866555555689**********999999*********** PP
TIGR01194 547 vvk 549
+v+
MMSYN1_0643 352 LVR 354
*97 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.0 1.9 0.027 2 59 141 .. 53 135 .. 46 142 .. 0.83
2 ! 68.4 0.0 2e-21 1.5e-19 15 187 .. 156 334 .. 140 346 .. 0.83
Alignments for each domain:
== domain 1 score: 6.0 bits; conditional E-value: 0.027
TIGR01189 59 lndkelaeqrdelaeellylgHldg.lKaeLsalEnLkfyaallqseqktveealekvgLsgledlpvaqLsAGqkrRlalarL 141
++++++ +q+++++ e++ ++ + K++L +E L +l++ +q+++++a ++v++++ l ++++ Gq + + l +L
MMSYN1_0643 53 IEKQNIRQQQKQVKAEIKKISATTKlFKQNLKLAESLYKKIKLTN-NQNDINKAKQEVEIAKSMLLQLKEVINGQGKSIKLEKL 135
566788888989999999888765516********9955555544.555****************************9999988 PP
== domain 2 score: 68.4 bits; conditional E-value: 2e-21
TIGR01189 15 lleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeL..salEnLkfyaallq..seqk.. 106
+ ++sf+++ Ge++ + G+nG+GK+t+ +il G+l++++Ge+++ ++ +++++ e+a+++l + ++ + + +++ ++ f + + ++
MMSYN1_0643 156 AIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQARKFLGIVFQNPDNQFIgsTVEADIAFGLENKRidPKKMpd 253
57889*****************************************9999999878878888777777766655436777899976666532222244 PP
TIGR01189 107 tveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
+ ++ +kvg++ + + +Ls Gqk+R+a+a l + i DE t lD +g + ++e++ + ++ ++l+ +d
MMSYN1_0643 254 IILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHD 334
789999******999999999******************************************999887777766654443 PP
>> TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 71.7 0.1 7.4e-23 5.4e-21 1285 1513 .. 140 368 .. 133 376 .. 0.84
Alignments for each domain:
== domain 1 score: 71.7 bits; conditional E-value: 7.4e-23
TIGR00957 1285 vefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdp.vlfsgslrmn 1379
+e+ + s++y +++ + d++ ti+ ge v i+g g+gks+++ l+ ++++ +gei+i g + + + + r l i+ q+p f gs
MMSYN1_0643 140 IEINHLSFKYGPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVNDHNIEQARKFLGIVFQNPdNQFIGSTVEA 235
68888999****************************************************************************944688875443 PP
TIGR00957 1380 ldpfsqysdeevwlalelahlkdfv..salpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqf..edc 1471
f+ ++ ++ ++ d++ sa+ ++++ + nls gq+q v +a +l i+++deat+ +d + i+ + +
MMSYN1_0643 236 DIAFGL-ENKR----IDPKKMPDIIldSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRetRTK 326
334443.2332....3334444544227777888888888888**********************************9999998755433311467 PP
TIGR00957 1472 tvltiahrlntimdytrvlvldkgevaefdapsellqqrgif 1513
t+l+i+h ++ i++ +v+vld+g++ + p e+++++ ++
MMSYN1_0643 327 TILSITHDMDEILNADKVIVLDHGKLVRVAKPLEIVEDKDFL 368
9*********************************99987665 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.3 0.7 1.3e-21 9.2e-20 2 205 .. 163 367 .. 162 381 .. 0.78
Alignments for each domain:
== domain 1 score: 69.3 bits; conditional E-value: 1.3e-21
TIGR03771 2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkss.....rkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaav 94
++++Ge+++++G nG+Gk+t+ + ++g++++++G++k+ g+ +++r+ +G v q + + + tv + a + r k+ +
MMSYN1_0643 163 TINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVndhniEQARKFLGIVFQNPDNQF-----IGSTVEADIAFGLENKRIDPKKMPDII 255
6899*********************************98864311111455666777777766544.....333444444444444444444444456 PP
TIGR03771 95 adalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelage.gtailmtthdlaeavatcdrvvllngrvv 191
d+ ++v ++ ++ +lsGGq+qrv +a +la++p ++++de + ld + ++ e++ +l + ++il thd+ e +++ + +vl g++v
MMSYN1_0643 256 LDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETrTKTILSITHDMDEILNADKVIVLDHGKLV 353
7778999998766666669**********************************************8761679999********99998899999**** PP
TIGR03771 192 adgapdqlqdaalw 205
++p ++ + + +
MMSYN1_0643 354 RVAKPLEIVEDKDF 367
*9999988776655 PP
>> TIGR01257 rim_protein: rim ABC transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 65.8 0.0 3e-21 2.2e-19 939 1145 .. 150 359 .. 139 384 .. 0.86
Alignments for each domain:
== domain 1 score: 65.8 bits; conditional E-value: 3e-21
TIGR01257 939 epsgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdi.etnldavrqslgmcpqh.nilfhhltvaehilfyaqlkg 1032
p a+d + t+ + + +++ghng+gk+t il g+l g + + g+ + + n++ r+ lg++ q + f tv i f + k
MMSYN1_0643 150 GPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNIVnDHNIEQARKFLGIVFQNpDNQFIGSTVEADIAFGLENKR 245
56666799*****************************************99998873579**********998745789999***9**99766665 PP
TIGR01257 1033 rsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrt..iimsthhmdeadll 1126
++ + + g+ ++e +lsgg ++++++a ++ d ++++de ts +dp +r i +++++ r rt i+ th mde l
MMSYN1_0643 246 IDPKKMPDIILDSAKKVGMEWALKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTktILSITHDMDEI-LN 340
44444333334445789**********************************************************99875327777999**96.88 PP
TIGR01257 1127 gdriaiisqgrlycsgtpl 1145
d++ ++ +g+l pl
MMSYN1_0643 341 ADKVIVLDHGKLVRVAKPL 359
9***********9988887 PP
>> TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.8 0.1 3.4e-13 2.5e-11 1175 1299 .. 89 222 .. 73 234 .. 0.80
2 ! 25.0 0.1 9.6e-09 7.1e-07 542 624 .. 268 351 .. 255 365 .. 0.87
Alignments for each domain:
== domain 1 score: 39.8 bits; conditional E-value: 3.4e-13
TIGR01271 1175 vfkfidlpqeeskpkkstkkyqlskvlvienkhvkk........iwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstll 1262
++k i l ++++ +k++++ +++k ++++ k v + + s+ +++++l+ ky + ++d+sf+++ g+ v ++g gsgkst+
MMSYN1_0643 89 LYKKIKLTNNQNDINKAKQEVEIAKSMLLQLKEVINgqgksiklEKLSDIAIEINHLSFKYGPEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTIS 184
56777777776666666666666666655544433222222222677888999***********9999**************************** PP
TIGR01271 1263 sallrllst.egeiqidgvswnsvtlqkwrkafgvipq 1299
l+ +l++ +gei+i g n +++ rk +g++ q
MMSYN1_0643 185 KILIGVLNAqHGEIKIFGNIVNDHNIEQARKFLGIVFQ 222
***99887627************************977 PP
== domain 2 score: 25.0 bits; conditional E-value: 9.6e-09
TIGR01271 542 lgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclc.kllanktrilvtsklehlkkadkilllhegs 624
l + + lsggq+ r+++a ++ d d+ ++d s ld ++ei e + + +kt + +t ++ + +adk+++l +g+
MMSYN1_0643 268 LKKEPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQlRETRTKTILSITHDMDEILNADKVIVLDHGK 351
5566789***************************************997653144556777779****************9996 PP
>> TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.2 0.2 2.5e-10 1.8e-08 15 83 .. 155 220 .. 139 240 .. 0.83
2 ! 40.2 0.2 4.6e-13 3.4e-11 370 481 .. 241 352 .. 210 359 .. 0.85
Alignments for each domain:
== domain 1 score: 31.2 bits; conditional E-value: 2.5e-10
TIGR02633 15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGivii 83
+a+d+++++++ Ge v++ G nG+Gkst+ k+l gv + +Gei g+ ++ ++i ++ k + i+
MMSYN1_0643 155 NAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLN--AQHGEIKIFGNIVNDHNIEQAR-KFLGIV 220
79**********************************86..4679999999888888887654.444444 PP
== domain 2 score: 40.2 bits; conditional E-value: 4.6e-13
TIGR02633 370 k.ksrideaaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaq.eGvaiivvsselae 465
++rid ++ ++i ++ k++ + a p+ +lsGG++q+ +a l l+p ++i+de t +d k ei ++ ql + + +i+ ++ ++ e
MMSYN1_0643 241 LeNKRIDPKKMPDIILDSAKKVGMEWALKKEPL-NLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLREtRTKTILSITHDMDE 337
447899999999999999999999999999887.6**********************************************8625667889******* PP
TIGR02633 466 vlGlsdrvlvigeGkl 481
+l +d+v+v+++Gkl
MMSYN1_0643 338 ILN-ADKVIVLDHGKL 352
**7.8*********98 PP
>> TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.8 7.9 2.9e-12 2.1e-10 247 397 .. 58 217 .. 39 223 .. 0.77
2 ! 27.2 0.0 4.4e-09 3.3e-07 161 236 .. 274 352 .. 253 357 .. 0.78
Alignments for each domain:
== domain 1 score: 37.8 bits; conditional E-value: 2.9e-12
TIGR03719 247 leqkekrleqeekeeaarkkalkkeleWvrss.pkarqakskarlaryeelaseesekkeetaeivippg.....erlGdkvievenlskafgdkl.. 336
+ q++k+++ e k+ +a +k +k++l+ +s k + + ++ +++ ++ + +++ + +e++ +g e+l d ie+++ls ++g +
MMSYN1_0643 58 IRQQQKQVKAEIKKISATTKLFKQNLKLAESLyKKIKLTNNQNDINKAKQEVEIAKSMLLQLKEVINGQGksiklEKLSDIAIEINHLSFKYGPEFpn 155
456677777777777777777777777666541334555556666665555555555555556665555533333689***************98644 PP
TIGR03719 337 liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki.Getvklayvdqsrdal 397
idd+sf++ +g v +iG nG+Gkst+ k+++g + ++Ge+ki G+ v+ ++q r+ l
MMSYN1_0643 156 AIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIfGNIVNDHNIEQARKFL 217
8******************************************976999**999***99865 PP
== domain 2 score: 27.2 bits; conditional E-value: 4.4e-09
TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey....kGtvvavthdryfldnvaeWileldrGeg 236
+lsGG+k+rva++ l +Pd++++de t ld + +++ + + + t++ +thd + n+ + ++ ld G+
MMSYN1_0643 274 NLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLretrTKTILSITHDMDEILNA-DKVIVLDHGKL 352
79*******************************987666655544431111579*******8766664.45556788775 PP
>> TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.0 0.0 1.1e-09 7.8e-08 22 67 .. 155 200 .. 142 223 .. 0.85
2 ! 30.6 0.0 6.8e-10 5e-08 146 209 .. 271 335 .. 254 350 .. 0.85
Alignments for each domain:
== domain 1 score: 30.0 bits; conditional E-value: 1.1e-09
TIGR02324 22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilv 67
+++++vs+++++Ge+v+++G+ G+Gkst+ k l + ++ g+i +
MMSYN1_0643 155 NAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKI 200
5899********************************9999999876 PP
== domain 2 score: 30.6 bits; conditional E-value: 6.8e-10
TIGR02324 146 aPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakarg.aaligifhde 209
P sGG kqRv ia +l d i++ de t+ Ld + ++ + e++ ++++++ ++++i hd
MMSYN1_0643 271 EPLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRtKTILSITHDM 335
58899*******************************999999***99888765516899****84 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 58.3 0.2 1.7e-18 1.3e-16 40 266 .. 156 376 .. 123 378 .. 0.76
Alignments for each domain:
== domain 1 score: 58.3 bits; conditional E-value: 1.7e-18
TIGR00955 40 llknvsGvaksGellAvlGsSGaGKtTLlnalafr...sekglkvsgdvllnGekveakemraisayvqq..ddlfiptltvrehLmfsahlrlkrrl 132
+ +vs ++++Ge + ++G G+GK+T+ ++l ++ ++k+ g ++n +++e + r+ + v q d+ fi++ tv+ ++ f + + r +
MMSYN1_0643 156 AIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVlnaQHGEIKIFG-NIVNDHNIE--QARKFLGIVFQnpDNQFIGS-TVEADIAFGLENK--R-I 246
5789999********************99998765110445556655.456666666..44555555544326788887.9999999864432..2.2 PP
TIGR00955 133 tkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPssel 230
k+ ++ + +++g++ + + lSgG+++R+a+as l dP ++++DE Ts LD ++ +++ +l + ++ il+i e+
MMSYN1_0643 247 DPKKMPDIILDSAKKVGMEWALKKE------PLNLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETRTKTILSITHDMDEI 338
2333334444555555555544432......236*********************************************************9999999 PP
TIGR00955 231 felfdkiillaeGrvvylGspeeav...kffselglpcP 266
+ dk+i+l++G+ v +p e v +f++++ l +P
MMSYN1_0643 339 LN-ADKVIVLDHGKLVRVAKPLEIVedkDFLRNIQLDVP 376
87.5************99999877633357777777766 PP
>> TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.9 0.0 6.1e-14 4.5e-12 4 218 .. 140 354 .. 137 363 .. 0.72
Alignments for each domain:
== domain 1 score: 43.9 bits; conditional E-value: 6.1e-14
TIGR02323 4 levselsksygsk..kgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnpr..Gl 95
+e+++ls +yg++ +++ vsf + Ge ++i+G GsGkst+ k l + l a++Ge++ ++ ++ r+ G+v qnp +
MMSYN1_0643 140 IEINHLSFKYGPEfpNAIDdVSFtINQGEYVTIIGHNGSGKSTISKILIGVLNAQHGEIKIFGNI--VNDHNIE-QARK-----FLGIVFQNPDnqFI 229
578999*****9833455579**9***********************************865332..3333333.3344.....46*******93334 PP
TIGR02323 96 rmevsaGanigerllavgarhyGkiraaakwlekveidaa.rikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelg 189
+v a g + ++ i + +kv ++ a + +p ++sGG +qr+ ia +l p ++++ e t l r + ++ +l
MMSYN1_0643 230 GSTVEADIAFGLENKRIDPKKMPDIILD--SAKKVGMEWAlKKEPLNLSGGQKQRVAIASTLALDPDIMIFdEATSMLDPKGKREIkeIMVQLRETRT 325
5555555555544444444444444333..34567776651459**********************98776599998866666655445555544455 PP
TIGR02323 190 laviivthlavarllaqrllvmkqGrvve 218
+++ +th l a++++v+ +G++v
MMSYN1_0643 326 KTILSITHDMDEILNADKVIVLDHGKLVR 354
566679997778899**********9985 PP
>> TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.2 1.3 0.61 45 18 80 .. 58 120 .. 8 124 .. 0.61
2 ! 21.4 1.5 2.3e-07 1.7e-05 421 502 .. 98 190 .. 62 200 .. 0.68
3 ! 15.2 0.0 1.8e-05 0.0013 583 638 .. 274 333 .. 256 339 .. 0.83
Alignments for each domain:
== domain 1 score: 0.2 bits; conditional E-value: 0.61
TIGR00954 18 tdkksseaavllnkviekkkkravdaredesskeelkkesknselekkkkkalvdkeflgklk 80
+ +++++ ++ ++k+ +++k +++++ es +++ k +++++ ++k+k++ + k +l +lk
MMSYN1_0643 58 IRQQQKQVKAEIKKISATTKLFKQNLKLAESLYKKIKLTNNQNDINKAKQEVEIAKSMLLQLK 120
222222222333333444555555666666666666666666667777666666666666665 PP
== domain 2 score: 21.4 bits; conditional E-value: 2.3e-07
TIGR00954 421 rprveekesaeeesrkselvagrgkveaqdngikfeni.plvtP..........egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgel 502
+ ++ +k++ e e ks+l++ + ++ q + ik+e++ ++++ e i+++sf +++G+ + iiG nG GKs + +il ++
MMSYN1_0643 98 NQNDINKAKQEVEIAKSMLLQLKEVINGQGKSIKLEKLsDIAIEinhlsfkygpEFPNAIDDVSFTINQGEYVTIIGHNGSGKSTISKILIGV 190
22233334444446778888888888888888888776234333556666655588889******************************9776 PP
== domain 3 score: 15.2 bits; conditional E-value: 1.8e-05
TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsv....dvEdklyelakevgitllsvsh 638
LsgG+kqR+a+A + P + DE+ts + + ++ + + +l t+ls++h
MMSYN1_0643 274 NLSGGQKQRVAIASTLALDPDIMIFDEATSMLDPkgkrEIKEIMVQLRETRTKTILSITH 333
59****************************997633335667777766666778888888 PP
>> TIGR00956 3a01205: pleiotropic drug resistance family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 4.8 1.1 79 75 103 .. 155 183 .. 22 187 .. 0.54
2 ? 4.7 0.0 0.014 1.1 77 133 .. 157 211 .. 142 245 .. 0.77
3 ! 22.1 0.0 7.9e-08 5.8e-06 210 290 .. 275 353 .. 273 361 .. 0.85
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 1.1
TIGR00956 75 dilkdvdglikpgelvvvLGrPgsGcstl 103
+ + dv+ i+ ge v ++G+ gsG+st+
MMSYN1_0643 155 NAIDDVSFTINQGEYVTIIGHNGSGKSTI 183
33444444555555555555555555554 PP
== domain 2 score: 4.7 bits; conditional E-value: 0.014
TIGR00956 77 lkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeik 133
+ dv+ i+ ge v ++G+ gsG+st+ k + + ++ + e ki + ++ ++i+
MMSYN1_0643 157 IDDVSFTINQGEYVTIIGHNGSGKSTISKILIGVLNAQHG--EIKIFGNIVNDHNIE 211
6778889999****************99998887777666..555555555555555 PP
== domain 3 score: 22.1 bits; conditional E-value: 7.9e-08
TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqi 290
+sGG+++Rv+ia +l+ ++ i+++D+at LD e +k + + + + + ++++i +++ + dkv+vl++Gk +
MMSYN1_0643 275 LSGGQKQRVAIASTLALDPDIMIFDEATSMLDPKGKRE-IKEIMVQLRETRTKTILSITHDMDEILNA-DKVIVLDHGKLV 353
69******************************999877.46666677777777777777777777774.9********987 PP
>> TIGR00630 uvra: excinuclease ABC subunit A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 4.4 2 1.5e+02 373 458 .. 19 104 .. 4 124 .. 0.59
2 ! 7.6 0.1 0.0029 0.22 621 660 .. 155 193 .. 145 232 .. 0.84
3 ! 25.0 0.1 1.6e-08 1.2e-06 474 561 .. 262 347 .. 251 373 .. 0.80
Alignments for each domain:
== domain 1 score: -1.8 bits; conditional E-value: 2
TIGR00630 373 efeGvleelerryketeseaarealekflsekaCpsCkgtrlkkealavkvegksiadvsel...sveealeffeellkleeeekkiae 458
+ e ++ l++ + + ++ ++ ++ +++++ ++ ++++++++ ++vk e k+i+++++l ++ a +++++ kl+++++ i +
MMSYN1_0643 19 DLEATITSLNNYFVKLNDLNN--QYINLIRQDNIDKIEKQNIRQQQKQVKAEIKKISATTKLfkqNLKLAESLYKK-IKLTNNQNDINK 104
555566666666655544443..56677777778888888888888888888887777666511133333444444.556665555543 PP
== domain 2 score: 7.6 bits; conditional E-value: 0.0029
TIGR00630 621 nnlkdidvsiplglltvitGvsgsGkstLindiLvkalee 660
n + d++ +i g+ ++i G gsGkst i +iL+ +l+
MMSYN1_0643 155 NAIDDVSFTINQGEYVTIIGHNGSGKST-ISKILIGVLNA 193
668899999*****************99.57788777665 PP
== domain 3 score: 25.0 bits; conditional E-value: 1.6e-08
TIGR00630 474 vGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdl.GntlivvehDeetireaDyvvdi 561
vG+++ l+++ lsGG +qr+++a+ + +L + ++De L ++ ++ + e++++lr+ t++ + hD + i +aD v+ +
MMSYN1_0643 262 VGMEW-ALKKEPLNLSGGQKQRVAIASTL--ALDPDIMIFDEATSMLDPKGKREIKEIMVQLRETrTKTILSITHDMDEILNADKVIVL 347
66665.56777778999999999999887..4777788899999999999999999999999875267888899999999999988855 PP
>> TIGR03637 cas1_YPEST: CRISPR-associated endonuclease Cas1, subtype I-F/YPEST
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.1 3.6 0.0003 0.022 144 208 .. 47 111 .. 18 125 .. 0.83
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 0.0003
TIGR03637 144 keegflvdeekleallerseeeiekaeesqellaaeakltkalyklaaktveyedftrdkrkksi 208
+++ +++++++++ +++++ei+k + +++l+ ++ kl++ lyk + t + +d +++k++ +i
MMSYN1_0643 47 QDNIDKIEKQNIRQQQKQVKAEIKKISATTKLFKQNLKLAESLYKKIKLTNNQNDINKAKQEVEI 111
33344689999999**********************************99999999998887554 PP
>> TIGR00041 DTMP_kinase: dTMP kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.7 5.4 3.2 2.3e+02 140 196 .] 52 109 .. 16 109 .. 0.77
2 ? 11.6 0.2 0.00055 0.04 1 31 [. 164 194 .. 164 203 .. 0.88
3 ? -1.7 0.2 6.2 4.6e+02 117 195 .. 328 404 .. 318 405 .. 0.54
Alignments for each domain:
== domain 1 score: -0.7 bits; conditional E-value: 3.2
TIGR00041 140 evalerlskrgeldreelekldflekvrekyleladk.ekkivvvdaenkveeveeki 196
++ ++ +++++++ + e +k +k+ ++ l+la+ kki + + +n +++ ++++
MMSYN1_0643 52 KIEKQNIRQQQKQVKAEIKKISATTKLFKQNLKLAESlYKKIKLTNNQNDINKAKQEV 109
344555666666668888899999999999999**99999999999999999988875 PP
== domain 2 score: 11.6 bits; conditional E-value: 0.00055
TIGR00041 1 mkkgkfiviEGidGaGKTtqlellkkllkee 31
+++g +++i G +G+GK+t++++l +l+++
MMSYN1_0643 164 INQGEYVTIIGHNGSGKSTISKILIGVLNAQ 194
57899*******************9999885 PP
== domain 3 score: -1.7 bits; conditional E-value: 6.2
TIGR00041 117 vlelnekalq.lkPdlvilLdidpevalerlskrgeldreelekldflekvrek..yleladk..ekkivvvdaenkveeveek 195
+l++ +++ + l+ d+vi Ld l r++k e + e++dfl++++ + l+ + ekk + + +++++e+ e+
MMSYN1_0643 328 ILSITHDMDEiLNADKVIVLDH---GKLVRVAKPLE----IVEDKDFLRNIQLDvpFVGLVREelEKKGIKIASTQNIDELVEQ 404
5555555555555555555553...23334444333....66677777666653235666655455666666666666666655 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (408 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 825 (0.183824); expected 89.8 (0.02)
Passed bias filter: 223 (0.0496881); expected 89.8 (0.02)
Passed Vit filter: 79 (0.0176025); expected 4.5 (0.001)
Passed Fwd filter: 61 (0.0135918); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 61 [number of targets reported over threshold]
# CPU time: 0.63u 0.47s 00:00:01.10 Elapsed: 00:00:00.70
# Mc/sec: 837.01
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0643 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0644 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0644.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0644/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0644 [L=119]
Description: L17: ribosomal protein L17 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-38 129.8 1.8 1.4e-38 129.6 1.8 1.0 1 TIGR00059 L17: ribosomal protein bL17
Domain annotation for each model (and alignments):
>> TIGR00059 L17: ribosomal protein bL17
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 129.6 1.8 3.1e-42 1.4e-38 3 111 .. 5 119 .] 2 119 .] 0.97
Alignments for each domain:
== domain 1 score: 129.6 bits; conditional E-value: 3.1e-42
TIGR00059 3 rklgrtsahRkallrnlasallkhekiettkakakelrrvveklitlakvdnlaarrevkaylrnkel......lkkLfseiapryeereGGYtRilk 94
+k g+++a+R+al+rnl+++l+ +e++e t+++akelrr +++itlak+++l++rr+++++lr+ + l+kLf+++a +ye+r+GGYt ilk
MMSYN1_0644 5 QKRGQNTAWRTALMRNLTTELIINESLEVTQTRAKELRRHFDHMITLAKRGDLHSRRQAASWLRDIDAdkketaLQKLFNKLAKKYENRNGGYTSILK 102
899*************************************************************9998999999************************ PP
TIGR00059 95 lgkRrgDaaemailelv 111
l R+gD+a+m i++l+
MMSYN1_0644 103 LDNRKGDNAPMVIIKLI 119
***************97 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (119 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 235 (0.0523619); expected 89.8 (0.02)
Passed bias filter: 148 (0.0329768); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 854.45
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0644 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0645 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0645.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0645/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0645 [L=317]
Description: rpoA: DNA-directed RNA polymerase, alpha subunit 5=Equivalog Transcription
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-96 319.2 1.4 6.3e-96 319.0 1.4 1.0 1 TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit
Domain annotation for each model (and alignments):
>> TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 319.0 1.4 1.4e-99 6.3e-96 1 297 [. 20 316 .. 20 317 .] 0.93
Alignments for each domain:
== domain 1 score: 319.0 bits; conditional E-value: 1.4e-99
TIGR02027 1 ygkfvlePLerGfgtTlGnaLRRvLLssiegaaitavkiegvlhEfstieGvkEdvleiilnlKklvlkseseeee....veltlsvkgpgevtakdi 94
ygkf+++PLerGfg+TlGna+RR LL+ +ga++ a+ki g++hEf++i+G+ E+v++iiln+K+lvlk++++ + v+l+++ + +g+v+a+d+
MMSYN1_0645 20 YGKFSVSPLERGFGITLGNAIRRTLLAATPGASVYAIKIAGATHEFTSIPGIIENVTKIILNIKQLVLKIDTSIYSddevVQLRIRSDIQGPVYAGDL 117
79*****************************************************************88777655444447799999999******** PP
TIGR02027 95 kaeegevEvvnpdlviatltedakleielkverGrGyvpaeenkeeee.evgviavDaifsPvkkvnYevenvrvgqktdydkLileieTdgsispke 191
+++vE++n+dl iat++e l++ l++++ rGy +++ nk+e++ e g+i +D+++sP+ kv+Y+v++ + g+ d +kL le++Tdgsi++ +
MMSYN1_0645 118 D-IPAGVEILNKDLLIATISEGGVLDLVLYAKNSRGYKTFKDNKNEKNiEPGMITIDSNYSPIIKVAYSVDSAKIGRAIDLEKLELEVTTDGSITAID 214
*.5566**********************************99766554377*********************************************** PP
TIGR02027 192 AlaeAakilkehlevfveleeeeeeleeekeeekeekekskllslkieeldLsvRslNcLkragietlgeLvskseeeLlkiknlGkksleeikekLk 289
A++ A++il hle+f +l++e++ le+ ++++++ k+l++++eeld+++RslNcLkragi+tl eLvsk+e+e+ +i+nlG+ksl+eik+k++
MMSYN1_0645 215 AISIASRILVAHLEFFIDLNREISVLEVIGTNQTDD----KELDRTVEELDFTQRSLNCLKRAGINTLRELVSKNEDEIGSIRNLGRKSLKEIKDKVA 308
**************************9766666665....799******************************************************* PP
TIGR02027 290 elgleLgk 297
+lgl +++
MMSYN1_0645 309 SLGLAFRQ 316
****9986 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (317 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 156 (0.0347594); expected 89.8 (0.02)
Passed bias filter: 95 (0.0211676); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 2167.74
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0645 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0646 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0646.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0646/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0646 [L=129]
Description: bact_S11: 30S ribosomal protein S11 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-58 194.7 1.6 1.4e-58 194.4 1.6 1.0 1 TIGR03632 uS11_bact: ribosomal protein uS11
2.1e-26 90.7 0.9 3.8e-26 89.9 0.9 1.3 1 TIGR03628 arch_S11P: ribosomal protein uS11
Domain annotation for each model (and alignments):
>> TIGR03632 uS11_bact: ribosomal protein uS11
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 194.4 1.6 6.2e-62 1.4e-58 1 117 [] 10 126 .. 10 126 .. 0.99
Alignments for each domain:
== domain 1 score: 194.4 bits; conditional E-value: 6.2e-62
TIGR03632 1 kkkkknvsegvvhikatfnntivtvtdekGnvlswasaGavgfkGskkstpyaaqlaaekaakkakelglkevevlvkGpgagresairalqaaglev 98
kk kkn+++g++hi++tfnntivtv+dekGnvlsw+saGa+gfkGskkstpyaaql++e+aak a+++g+k+v+v+vkGpg+gr++airalq+agle+
MMSYN1_0646 10 KKIKKNIPKGIAHIHSTFNNTIVTVSDEKGNVLSWSSAGAIGFKGSKKSTPYAAQLISEAAAKGAMDNGVKTVSVEVKGPGPGRDAAIRALQMAGLEI 107
799*********************************************************************************************** PP
TIGR03632 99 tsikdvtpiphnGcrprkr 117
tsikd+tpiphnG+rprkr
MMSYN1_0646 108 TSIKDTTPIPHNGVRPRKR 126
******************8 PP
>> TIGR03628 arch_S11P: ribosomal protein uS11
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 89.9 0.9 1.7e-29 3.8e-26 3 116 .. 19 123 .. 17 124 .. 0.96
Alignments for each domain:
== domain 1 score: 89.9 bits; conditional E-value: 1.7e-29
TIGR03628 3 giahiyssfnntiititdltGaetiakvsGGmvvkadrdessPyaamqaakkvaekakekgieglhikvraPGgsksksPGPGaqaairalaraGlki 100
giahi+s+fnnti+t++d G ++++ +s G + + ++s+Pyaa +++ +a+ a++ g++++ + v++ PGPG +aairal aGl+i
MMSYN1_0646 19 GIAHIHSTFNNTIVTVSDEKG-NVLSWSSAGAIGFKGSKKSTPYAAQLISEAAAKGAMDNGVKTVSVEVKG--------PGPGRDAAIRALQMAGLEI 107
9******************99.6899******************************************987........57***************** PP
TIGR03628 101 griedvtPiPhdgtrr 116
i+d tPiPh+g+r+
MMSYN1_0646 108 TSIKDTTPIPHNGVRP 123
*************997 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (129 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 193 (0.0430036); expected 89.8 (0.02)
Passed bias filter: 158 (0.035205); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 975.00
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0646 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0647 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0647.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0647/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0647 [L=121]
Description: bact_S13: 30S ribosomal protein S13 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.2e-51 169.6 1.7 7e-51 169.4 1.7 1.0 1 TIGR03631 uS13_bact: ribosomal protein uS13
1.8e-19 68.4 3.2 9.9e-10 36.8 0.7 2.0 2 TIGR03629 uS13_arch: ribosomal protein uS13
------ inclusion threshold ------
0.017 11.9 0.1 0.019 11.8 0.1 1.1 1 TIGR03755 conj_TIGR03755: integrating conjugative element pr
Domain annotation for each model (and alignments):
>> TIGR03631 uS13_bact: ribosomal protein uS13
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 169.4 1.7 4.7e-54 7e-51 1 113 [] 3 114 .. 3 114 .. 0.99
Alignments for each domain:
== domain 1 score: 169.4 bits; conditional E-value: 4.7e-54
TIGR03631 1 RiagvdipknkrveiaLtyiyGigktrakkilekagidedkkvkdlteeelekirevieeeykvegdlrrevslnikrlvdigcyrGlRhrkgLPvrG 98
Ri+gv+ip+nkrv+++LtyiyGig +a+++l++++i+ed++vkdltee++++i +i ++yk+eg+lrrevslnikrl++ig+yrGlRhrkgLPvrG
MMSYN1_0647 3 RISGVEIPNNKRVVVSLTYIYGIGLPTAQSVLKTLNISEDIRVKDLTEEQIKNISMEI-SKYKTEGELRREVSLNIKRLMEIGSYRGLRHRKGLPVRG 99
9*********************************************************.9************************************** PP
TIGR03631 99 qrtktnartrkGkrk 113
q++ktnart kG+rk
MMSYN1_0647 100 QSSKTNARTVKGPRK 114
*************97 PP
>> TIGR03629 uS13_arch: ribosomal protein uS13
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.7 0.1 1.3e-11 1.9e-08 6 69 .. 2 65 .. 1 68 [. 0.95
2 ! 36.8 0.7 6.6e-13 9.9e-10 95 134 .. 69 108 .. 65 120 .. 0.86
Alignments for each domain:
== domain 1 score: 32.7 bits; conditional E-value: 1.3e-11
TIGR03629 6 vriadtDldGnkkvelaLteikGiglrlakaiveklgldkeaklGelsdeevekleeavenaee 69
ri+ +++ nk+v ++Lt i Gigl +a+ + ++l++ ++ ++ +l++e++++++ ++++++
MMSYN1_0647 2 ARISGVEIPNNKRVVVSLTYIYGIGLPTAQSVLKTLNISEDIRVKDLTEEQIKNISMEISKYKT 65
6999******************************************************999764 PP
== domain 2 score: 36.8 bits; conditional E-value: 6.6e-13
TIGR03629 95 leltvkeDinrlkkirsyrGiRhelGlkvRGqRtkstgRk 134
l+ v+ +i+rl++i syrG+Rh++Gl+vRGq k++ R+
MMSYN1_0647 69 LRREVSLNIKRLMEIGSYRGLRHRKGLPVRGQSSKTNART 108
55567789*****************************997 PP
>> TIGR03755 conj_TIGR03755: integrating conjugative element protein, PFL_4711 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.8 0.1 1.3e-05 0.019 345 391 .. 38 83 .. 30 113 .. 0.72
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 1.3e-05
TIGR03755 345 nvaankeaveevekklekLdreieslklElelrkelasntalailer 391
n++++ +++ +e++++++ ei++ k+E elr+e+ n ++e
MMSYN1_0647 38 NISEDIRVKDLTEEQIKNISMEISKYKTEGELRREVSLNIK-RLMEI 83
777788889999***********************998843.34444 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (121 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 205 (0.0456774); expected 89.8 (0.02)
Passed bias filter: 123 (0.0274064); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 827.43
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0647 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0648 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0648.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0648/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0648 [L=37]
Description: rpmJ_bact: ribosomal protein L36 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-21 73.6 14.6 2.5e-21 73.5 14.6 1.0 1 TIGR01022 rpmJ_bact: ribosomal protein bL36
Domain annotation for each model (and alignments):
>> TIGR01022 rpmJ_bact: ribosomal protein bL36
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 73.5 14.6 5.6e-25 2.5e-21 1 37 [] 1 37 [] 1 37 [] 0.99
Alignments for each domain:
== domain 1 score: 73.5 bits; conditional E-value: 5.6e-25
TIGR01022 1 MKVraSVKkiCekCKiIkRkgvvrViCknpkHkQrqg 37
MKVr+SVK+iC+kC++I+Rkg+v++iC +pkHkQrqg
MMSYN1_0648 1 MKVRSSVKQICDKCRVIRRKGRVMIICVTPKHKQRQG 37
************************************9 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (37 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 159 (0.0354278); expected 89.8 (0.02)
Passed bias filter: 107 (0.0238414); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 279.65
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0648 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0649 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0649.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0649/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0649 [L=74]
Description: infA: translation initiation factor IF-1 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-37 125.5 0.5 1.5e-37 125.4 0.5 1.0 1 TIGR00008 infA: translation initiation factor IF-1
0.00055 17.9 0.0 0.00059 17.8 0.0 1.1 1 TIGR00523 eIF-1A: translation initiation factor eIF-1A
Domain annotation for each model (and alignments):
>> TIGR00008 infA: translation initiation factor IF-1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.4 0.5 6.6e-41 1.5e-37 1 69 [] 3 71 .. 3 71 .. 0.99
Alignments for each domain:
== domain 1 score: 125.4 bits; conditional E-value: 6.6e-41
TIGR00008 1 kedkieleGkvveslpnamfrveleNgvevlahisGkirknyiriLpgDkVkvelspYdltkGRIiyRl 69
ke+++e+eG+vve+lpna+f+v+leNgv+++ah+sGkir++yiriLpgDkV++ +spYd+t+GRI+yR+
MMSYN1_0649 3 KETEMEFEGTVVEVLPNAQFKVKLENGVVINAHVSGKIRMHYIRILPGDKVTIVISPYDMTRGRITYRK 71
899*****************************************************************6 PP
>> TIGR00523 eIF-1A: translation initiation factor eIF-1A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.8 0.0 2.6e-07 0.00059 16 71 .. 4 62 .. 1 72 [. 0.77
Alignments for each domain:
== domain 1 score: 17.8 bits; conditional E-value: 2.6e-07
TIGR00523 16 keegeilgvvekllGagrvkvrcldGkkrlaripGklkkk.iwireGdvv..lvkpwef 71
e e g v ++l +++ kv+ ++G+ a++ Gk++ + i i Gd v +++p+++
MMSYN1_0649 4 ETEMEFEGTVVEVLPNAQFKVKLENGVVINAHVSGKIRMHyIRILPGDKVtiVISPYDM 62
45678899*****************************9754889999966114455554 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (74 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 131 (0.0291889); expected 89.8 (0.02)
Passed bias filter: 99 (0.0220588); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 531.34
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0649 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0650 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0650.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0650/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0650 [L=251]
Description: met_pdase_I: methionine aminopeptidase, type I 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-89 297.2 1.3 2.4e-89 297.0 1.3 1.0 1 TIGR00500 met_pdase_I: methionine aminopeptidase, type I
1.1e-29 101.9 1.1 9.6e-25 85.7 0.1 2.0 2 TIGR00501 met_pdase_II: methionine aminopeptidase, type II
2.8e-16 57.1 0.5 7.4e-14 49.2 0.2 2.4 3 TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa
Domain annotation for each model (and alignments):
>> TIGR00500 met_pdase_I: methionine aminopeptidase, type I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 297.0 1.3 1.6e-92 2.4e-89 1 246 [. 2 248 .. 2 249 .. 0.98
Alignments for each domain:
== domain 1 score: 297.0 bits; conditional E-value: 1.6e-92
TIGR00500 1 islkskeeieklrkagelvaevlellerevkpGvstkeldkiakdfiekkgAksafkgykgfpgsvCiSvNevviHGipdkkvlkdgDivniDvgvel 98
i++k++e+i+k++ ag+++a+ l+ll++++kpGv+ +ldk ++fi+++g s fk+y+gfp+++CiS+N+++iHGip++++l++gDiv+iD g +
MMSYN1_0650 2 ITIKNQEQIQKMKIAGQVLAKGLNLLKSMIKPGVNCLDLDKAFEEFIKQNGCESNFKNYQGFPKTICISINDQLIHGIPKNRILQNGDIVSIDAGCMY 99
789*********************************************************************************************** PP
TIGR00500 99 dGyygDtaktllvgk.vseeaeklleatkealkkaieeikvgkrikeiskaiektaeekgfsvvkeytGHGiGrklHeepeilnyakketnvrlkeGm 195
+ +++D+a+t++ g +++++ l+++t++al ai+e+k+g r++ i+++i++++e++ fsv ++ytGHGiG lHe+p i+ny+ ++t+vrl+e m
MMSYN1_0650 100 QKWHADSAFTMVCGIaNDKKNDILIRVTEKALDLAIAELKPGIRVGTIGSIIQNYVESHNFSVPRDYTGHGIGLALHEDPYIPNYGIPNTGVRLQENM 197
**************8467788889************************************************************************** PP
TIGR00500 196 viaiEPmvnekteeiviaadgWtvltkdkklsaqfEhtvvvtengveiLte 246
vi+iEPmv+ +t++++ a d+Wtv + d++++a+fEht+++t++g+e+Lt+
MMSYN1_0650 198 VICIEPMVQMGTYKTKLADDNWTVYSADHSMTAHFEHTILITKDGCEVLTK 248
**************************************************7 PP
>> TIGR00501 met_pdase_II: methionine aminopeptidase, type II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 85.7 0.1 6.4e-28 9.6e-25 3 195 .. 8 209 .. 4 225 .. 0.86
2 ! 15.8 0.1 1.2e-06 0.0018 271 295 .] 224 248 .. 211 248 .. 0.89
Alignments for each domain:
== domain 1 score: 85.7 bits; conditional E-value: 6.4e-28
TIGR00501 3 evaeklikaGkilkkvrreaaekivpGlkllevaefvenrirelGaeP......afPan..isinevaahftpkagdetvlkdedvvkldlGahvdGy 92
e+++k+ aG++l k + + +i+pG++ l++ + e+ i++ G e +fP isin+ h pk +++l+++d+v +d G + +
MMSYN1_0650 8 EQIQKMKIAGQVLAKGLNLLKSMIKPGVNCLDLDKAFEEFIKQNGCESnfknyqGFPKTicISINDQLIHGIPK---NRILQNGDIVSIDAGCMYQKW 102
55666667999************************************5455556***7522799******9998...69******************* PP
TIGR00501 93 iadtaitvdlddq....ykellkaakdaletaikeiradvevgeiGkvieeviesygvkPisnLtGhslaryrlhagksipnvke.rdttkleeGevl 185
ad+a+t+ + + l++ ++ al+ ai e++++++vg iG +i++ +es+++ ++ tGh++ lh + ipn+ +++++l+e +v+
MMSYN1_0650 103 HADSAFTMVCGIAndkkNDILIRVTEKALDLAIAELKPGIRVGTIGSIIQNYVESHNFSVPRDYTGHGIG-LALHEDPYIPNYGIpNTGVRLQENMVI 199
*******865422122256689999*******************************************96.799*********7616679******** PP
TIGR00501 186 aiepfatdGv 195
iep+ G
MMSYN1_0650 200 CIEPMVQMGT 209
****998886 PP
== domain 2 score: 15.8 bits; conditional E-value: 1.2e-06
TIGR00501 271 ksgslvaqfehtilveedgaevvtk 295
+ s++a fehtil+++dg+ev+tk
MMSYN1_0650 224 ADHSMTAHFEHTILITKDGCEVLTK 248
5789******************997 PP
>> TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.2 0.2 4.9e-17 7.4e-14 13 177 .. 3 159 .. 1 169 [. 0.90
2 ! 5.6 0.0 0.00085 1.3 215 253 .. 191 229 .. 186 236 .. 0.90
3 ? 0.5 0.0 0.029 44 311 335 .. 225 249 .. 222 250 .. 0.82
Alignments for each domain:
== domain 1 score: 49.2 bits; conditional E-value: 4.9e-17
TIGR00495 13 slsnpevvtkykiageiankvlkkvvekcksgakvvdiCekGdelikee.takvykkkkelekGiafPtavsvnnvvghfsPlksdelvlkeGdvvki 109
++ n+e ++k kiag++ k l+ + + k+g++ +d+ + +e+ik++ ++ +k+ ++G ++s+n+ h P +++l++Gd+v i
MMSYN1_0650 3 TIKNQEQIQKMKIAGQVLAKGLNLLKSMIKPGVNCLDLDKAFEEFIKQNgCESNFKN----YQGFPKTICISINDQLIHGIP---KNRILQNGDIVSI 93
7899******************************************98735778888....88888888**********999...569********** PP
TIGR00495 110 dlGvhidGfialvahtivigaeesvtGrkadv.iaaaslaleaalrlvkPGkkntevteviekvaasyd 177
d G+ + a a t+v g +k d+ i ++ al+ a+ +kPG + + +i+ +s++
MMSYN1_0650 94 DAGCMYQKWHADSAFTMVCG---IANDKKNDIlIRVTEKALDLAIAELKPGIRVGTIGSIIQNYVESHN 159
*******************8...445678886478999***************9999999998777765 PP
== domain 2 score: 5.6 bits; conditional E-value: 0.00085
TIGR00495 215 vefeenevyavdilvstgeGkakeederttiykkdedkt 253
v ++en v +++ +v g k+k +d++ t+y d++ t
MMSYN1_0650 191 VRLQENMVICIEPMVQMGTYKTKLADDNWTVYSADHSMT 229
5689*****************************999876 PP
== domain 3 score: 0.5 bits; conditional E-value: 0.029
TIGR00495 311 eGeivaqfkftvlllpnGsirltss 335
+ ++ a+f+ t+l++++G + lt++
MMSYN1_0650 225 DHSMTAHFEHTILITKDGCEVLTKE 249
5667899***********9999875 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (251 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 126 (0.0280749); expected 89.8 (0.02)
Passed bias filter: 106 (0.0236185); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1638.39
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0650 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0651 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0651.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0651/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0651 [L=213]
Description: adk 4=Probable Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-73 245.4 0.6 1.1e-73 245.3 0.6 1.0 1 TIGR01351 adk: adenylate kinase
3.3e-36 122.9 2.2 1.3e-25 88.4 0.1 2.0 2 TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
2.4e-32 110.1 0.9 1.4e-23 81.5 0.0 2.0 2 TIGR01360 aden_kin_iso1: adenylate kinase
1.2e-05 23.3 0.1 3.7e-05 21.8 0.1 1.9 1 TIGR02173 cyt_kin_arch: putative cytidylate kinase
0.0021 14.9 0.5 0.0028 14.5 0.5 1.3 1 TIGR02928 TIGR02928: orc1/cdc6 family replication initiation
0.0078 13.9 0.1 0.025 12.2 0.0 2.0 2 TIGR00017 cmk: cytidylate kinase
Domain annotation for each model (and alignments):
>> TIGR01351 adk: adenylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 245.3 0.6 1.5e-76 1.1e-73 1 210 [. 2 210 .. 2 212 .. 0.95
Alignments for each domain:
== domain 1 score: 245.3 bits; conditional E-value: 1.5e-76
TIGR01351 1 rlvllGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLde 98
+++llG+PG+GKGTqa++l++kl++ ++stGdl+R+e++ +t+lg k++ey+++Gk+vpd+iv+++v++ l++ +++++i+DG+PRtleQa+ L++
MMSYN1_0651 2 NIMLLGAPGCGKGTQAEQLVNKLNFIQVSTGDLMRKEISLNTSLGLKCQEYMNAGKYVPDQIVNQIVSQFLKN---TNDKLIFDGYPRTLEQAKSLEQ 96
589********************************************************************88...4678****************** PP
TIGR01351 99 lleelglkldavielkvpdevlverisgRricpkcgkvynlkfkkpkv..ecddctaellkqReDDteevvkkRlevYkeqteplieyYkkkgklvei 194
+l+ +++k+d+v++++++d++l++ri++R++cp c++++nl+++kpk+ cd ++ +l++R+DD+ + v+ Rl++Ykeqt pli+y+k+++k++ei
MMSYN1_0651 97 MLDLYNKKIDYVFYIDINDQILIKRITNRLVCPLCKASFNLETRKPKQegLCDFDNT-KLVKRSDDSLDKVQIRLQTYKEQTLPLIDYFKTNSKFIEI 193
************************************************988887776.5556************************************ PP
TIGR01351 195 dae.kkieevlkeilea 210
+a+ + e+v+++i+
MMSYN1_0651 194 KADdLSAEQVFNQIKGE 210
998789999*9999865 PP
>> TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.4 0.1 1.7e-28 1.3e-25 3 127 .. 4 126 .. 2 141 .. 0.92
2 ! 34.6 0.3 5.3e-12 3.9e-09 131 182 .. 157 209 .. 148 212 .. 0.91
Alignments for each domain:
== domain 1 score: 88.4 bits; conditional E-value: 1.7e-28
TIGR01359 3 fvlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikeseeskkflidGfPrneenleawekli 100
++lG+PG+GkGtq +++v++++f+ +s+Gdl+r+ei+ + g +++++ Gk vP ++ +++++ +k+++ +k++ dG+Pr e ++ e+++
MMSYN1_0651 4 MLLGAPGCGKGTQAEQLVNKLNFIQVSTGDLMRKEIS-LNTSLGLKCQEYMNAGKYVPDQIVNQIVSQFLKNTN--DKLIFDGYPRTLEQAKSLEQML 98
68***********************************.66889999**********************999988..7799***************999 PP
TIGR01359 101 d.ekvevkfvlfldcseevmvkrllkrg 127
d + +++ v+++d+++++++kr+++r
MMSYN1_0651 99 DlYNKKIDYVFYIDINDQILIKRITNRL 126
723567889*****************95 PP
== domain 2 score: 34.6 bits; conditional E-value: 5.3e-12
TIGR01359 131 Grvddnieslkkrletykeetlpvieyfekknkvkkidaek.sveevfeevek 182
r+dd + ++ rl+tyke+tlp+i+yf+ + k ++i+a++ s e+vf++++
MMSYN1_0651 157 KRSDDSLDKVQIRLQTYKEQTLPLIDYFKTNSKFIEIKADDlSAEQVFNQIKG 209
69************************************986599******986 PP
>> TIGR01360 aden_kin_iso1: adenylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 81.5 0.0 1.9e-26 1.4e-23 6 128 .. 3 126 .. 1 147 [. 0.88
2 ! 27.4 0.1 7.2e-10 5.4e-07 131 182 .. 156 208 .. 150 212 .. 0.89
Alignments for each domain:
== domain 1 score: 81.5 bits; conditional E-value: 1.9e-26
TIGR01360 6 ifivGGpGsGkGtqcekivekyGfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekr 103
i+++G pG+GkGtq e++v+k f +s+Gdl+r+e++ ++ g k q+ m+ G+ vp ++v +++ + l ++ + ++ dGypr +q + +e+
MMSYN1_0651 3 IMLLGAPGCGKGTQAEQLVNKLNFIQVSTGDLMRKEISLNTSLGLKCQEYMNAGKYVPDQIVNQIVSQFLKNTND---KLIFDGYPRTLEQAKSLEQM 97
6799***********************************************************999987765554...4789*************998 PP
TIGR01360 104 i....aeaklvlyldvsedtlvkrllkra 128
+ ++ + v+y+d+ ++ l+kr+ +r
MMSYN1_0651 98 LdlynKKIDYVFYIDINDQILIKRITNRL 126
7333246789***************9985 PP
== domain 2 score: 27.4 bits; conditional E-value: 7.2e-10
TIGR01360 131 sarvddnektikkrletykkatepvieyyeskgkllkinaeg.tvddvflevv 182
r dd+ + ++ rl+tyk++t p+i+y+++++k +i a+ ++++vf ++
MMSYN1_0651 156 VKRSDDSLDKVQIRLQTYKEQTLPLIDYFKTNSKFIEIKADDlSAEQVFNQIK 208
5699************************************8647899**9985 PP
>> TIGR02173 cyt_kin_arch: putative cytidylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.8 0.1 4.9e-08 3.7e-05 1 67 [. 1 69 [. 1 145 [. 0.80
Alignments for each domain:
== domain 1 score: 21.8 bits; conditional E-value: 4.9e-08
TIGR02173 1 miivisGpPGsGkttvakilaeklslklisaGki..relaekkgldlaeskkaeeekeiDkkiDrkike 67
m i++ G PG Gk t a++l +kl++ +s+G++ +e++ + l l+ +++ + k + +i ++i+
MMSYN1_0651 1 MNIMLLGAPGCGKGTQAEQLVNKLNFIQVSTGDLmrKEISLNTSLGLKCQEYMNAGKYVPDQIVNQIVS 69
779999**************************9855588888888888888888877775555444443 PP
>> TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.5 0.5 3.8e-06 0.0028 42 205 .. 2 178 .. 1 197 [. 0.67
Alignments for each domain:
== domain 1 score: 14.5 bits; conditional E-value: 3.8e-06
TIGR02928 42 nvliyGktGtGKtavtkkvlkeleeaaeekdvr......vst.vyvnCqelste.....yqvlvelvnql.aeseeevpetGlstk.evfeelvkele 125
n+++ G +G+GK + +++++++l+ + ++++ ++t + Cqe+ q++ ++v q+ ++++ ++ G++ e + l + l+
MMSYN1_0651 2 NIMLLGAPGCGKGTQAEQLVNKLNFIQVSTGDLmrkeisLNTsLGLKCQEYMNAgkyvpDQIVNQIVSQFlKNTNDKLIFDGYPRTlEQAKSLEQMLD 99
9*********************986554433221122224332568899986541111146777777777999999******9964233444444444 PP
TIGR02928 126 ..eredsliivLDEiDklv.kkeadelLyeLsraeengdlekakvsvigisndlkfleeldervksslseeeivFppYdaeeL 205
+++ ++ +D D+++ k+ + l+ L +a+ n +++ k g+ d++ +l +r +sl + +i + Y+++ L
MMSYN1_0651 100 lyNKKIDYVFYIDINDQILiKRITNRLVCPLCKASFNLETR--KPKQEGLC-DFD-NTKLVKRSDDSLDKVQIRLQTYKEQTL 178
33445556889999999988999999999999995555444..45444443.232.345666667777777777777766665 PP
>> TIGR00017 cmk: cytidylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.2 0.0 3.3e-05 0.025 4 38 .. 2 36 .. 1 76 [. 0.91
2 ? -3.3 0.0 1.9 1.4e+03 192 213 .. 186 207 .. 181 208 .. 0.74
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 3.3e-05
TIGR00017 4 iiaiDGPsaaGKstvakalaeklgykyldsGalYR 38
i + G + GK+t a +l +kl++ +++G l R
MMSYN1_0651 2 NIMLLGAPGCGKGTQAEQLVNKLNFIQVSTGDLMR 36
567778899***********************998 PP
== domain 2 score: -3.3 bits; conditional E-value: 1.9
TIGR00017 192 kakdalyldtselsldevveki 213
+ +++++++ls ++v ++i
MMSYN1_0651 186 TNSKFIEIKADDLSAEQVFNQI 207
5566788888899999988876 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (213 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 269 (0.0599376); expected 89.8 (0.02)
Passed bias filter: 165 (0.0367647); expected 89.8 (0.02)
Passed Vit filter: 30 (0.00668449); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 1390.35
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0651 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0652 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0652.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0652/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0652 [L=482]
Description: preprotein translocase, SecY subunit 5=Equivalog Protein export
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.4e-139 461.3 31.9 7.7e-139 461.1 31.9 1.0 1 TIGR00967 3a0501s007: preprotein translocase, SecY subunit
8.5e-51 170.9 24.7 1.3e-50 170.3 24.7 1.3 1 TIGR02920 acc_sec_Y2: accessory Sec system translocase SecY2
Domain annotation for each model (and alignments):
>> TIGR00967 3a0501s007: preprotein translocase, SecY subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 461.1 31.9 3.4e-142 7.7e-139 3 413 .. 40 460 .. 38 462 .. 0.98
Alignments for each domain:
== domain 1 score: 461.1 bits; conditional E-value: 3.4e-142
TIGR00967 3 kllfTlvlLvlfrlgtfipvpgidasasqesiqqna.lfellnllsggalgeisifaLGIsPyitAsiilQLLtgdvapllelqkeegekgrrklqql 99
++lfTl++L+++rlg++i+vpg++++++ ++++++ +f+ll++l+gg++g++si+aLG+sPyitAsii+QLL++dv+p+l+ ++++ge+gr+kl++l
MMSYN1_0652 40 RILFTLLALIIIRLGVYITVPGVTLDKRFATDSSRIqFFQLLSTLGGGSIGRFSILALGVSPYITASIIVQLLSTDVIPVLTRWSKSGERGRKKLDKL 137
9**************************9988888889************************************************************* PP
TIGR00967 100 tryltlilaliqslvivatgisl........vnavsdlglllvlliviqltvgsvivmwldEliskkGiGnGisllifagIvatlpkallqatevrqs 189
t+++++ +al+q+ ++++t +s+ ++v+ +++++++li ++++ gs++++w++++i+ kGiGnGis++if+gI+ ++p +l++++e+++s
MMSYN1_0652 138 TKIIMIPFALMQAEATIFTLSSQglivpgwdSTNVIANSAFYYVLIPLVMLGGSFFMLWIADQITIKGIGNGISIVIFIGIIISMPTNLKATFEYWVS 235
********************888******96699**************************************************************** PP
TIGR00967 190 kvralee.llraelevllvllltvlvilvvvfvqearrkipiqsakvkggrrskqstylplklnqagviPvIlasallslialisqilnskeg..gla 284
+ + ++ ++++ l++++++++++lvil vv+++ea+rkipiq++ + ++++s+++ ylplkln+agviPvI+asa++s++++isqi+++ ++ g++
MMSYN1_0652 236 NSGEEANiFFSGLLNFMIYISVFLLVILSVVIMNEAERKIPIQQTGSGLTDSSEHTPYLPLKLNNAGVIPVIFASAIISTPITISQIIEAVNPdsGFV 333
*************************************************999************************************9998877899 PP
TIGR00967 285 yflntikslslskpvkailYliliilFsffYvevqlnPeelAknlkkqgmvipGiRpgketekylkrvlnrltviGslflgliavlpnlleallglpk 382
+f+++ +ls+++++++ ++ ili+lF+f+Y++vq+nPe++A+n++k+g++ipGi+pgk+t+kyl+ ++nrl+v+Gs+fl++ia+lp+++++l++lp+
MMSYN1_0652 334 IFTRD--YLSFNTWWGISIFGILIVLFTFLYSQVQINPEKVAENFQKSGTFIPGIKPGKDTTKYLTGIINRLSVVGSVFLAIIALLPYVISKLTQLPS 429
99999..9999*************************************************************************************** PP
TIGR00967 383 llalggtsllivvgvaietvkqieselisrn 413
+la+ggt+l+i+++vai+tv+q++ ++i++n
MMSYN1_0652 430 NLAIGGTGLIICISVAIQTVQQLKGRIIQQN 460
**************************99987 PP
>> TIGR02920 acc_sec_Y2: accessory Sec system translocase SecY2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 170.3 24.7 5.7e-54 1.3e-50 3 383 .. 38 453 .. 36 463 .. 0.80
Alignments for each domain:
== domain 1 score: 170.3 bits; conditional E-value: 5.7e-54
TIGR02920 3 lkkilftlflliiyvlGsnislPfvevskkdl.kgkknsflklaialtGgnlstlsiFslGlgPllssmillqllsfkksdklkals......skekq 93
+ +ilftl+ lii lG +i++P+v + k+ + + +f++l+++l Gg + + si +lG++P++++ i++qlls l+ s +k+ +
MMSYN1_0652 38 ILRILFTLLALIIIRLGVYITVPGVTLDKRFAtDSSRIQFFQLLSTLGGGSIGRFSILALGVSPYITASIIVQLLSTDVIPVLTRWSksgergRKKLD 135
669************************996431344568*************************************8766555554411111155556 PP
TIGR02920 94 ykervltliiaviqslavilsfvnk....nglsdtkl........llliliLvtGtlllvWladkNakyGig.gsivivlvsllkniisdvlellqas 178
+++++ a++q+ a i+++ ++ g + t++ +l+ l++ G++++ W+ad+ + Gig g ++++++++ +++++ + +++
MMSYN1_0652 136 KLTKIIMIPFALMQAEATIFTLSSQglivPGWDSTNViansafyyVLIPLVMLGGSFFMLWIADQITIKGIGnGISIVIFIGIIISMPTNLKATFEYW 233
666777777899***99999988763222233444432222222156679999******************9445567789*******9999998754 PP
TIGR02920 179 y........illivllillllvalflll.....fieraeyripvvdi..slvsalnlksYlslklNpagsmaymvslsllvlpkyiiillgsifsnss 261
i ll +++ + +fll+ +++ ae +ip+ ++ +l+ +++ + Yl+lklN ag ++++++ ++++ p i +++ + ++s
MMSYN1_0652 234 VsnsgeeanIFFSGLLNFMIYISVFLLVilsvvIMNEAERKIPIQQTgsGLTDSSEHTPYLPLKLNNAGVIPVIFASAIISTPITISQIIEAVNPDSG 331
334455555444456666666666666411111577899999988873268999******************************************** PP
TIGR02920 262 dinaevkefslssvlgiliylvlllllsyfltfvlidtkekskefrksgeyiegikPGkdterylnrlvlriavfgsvlvaillgiplyfalfvekll 359
+ ++ +++s++ gi+i+ +l++l++++++ v+i++++ +++f+ksg +i+gikPGkdt +yl ++ r++v+gsv+ ai++ +p + +++ +
MMSYN1_0652 332 FVIFTRDYLSFNTWWGISIFGILIVLFTFLYSQVQINPEKVAENFQKSGTFIPGIKPGKDTTKYLTGIINRLSVVGSVFLAIIALLPYVISKLTQLPS 429
***************************************************************************************99888887777 PP
TIGR02920 360 klaiitvqlivltgisinikdeik 383
+lai + li+ + i+ +++k
MMSYN1_0652 430 NLAIGGTGLIICISVAIQTVQQLK 453
777777777766666666655555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (482 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 277 (0.0617201); expected 89.8 (0.02)
Passed bias filter: 69 (0.0153743); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 3460.86
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0652 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0653 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0653.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0653/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0653 [L=145]
Description: rplO_bact: ribosomal protein L15 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-50 168.0 5.9 2.9e-50 167.8 5.9 1.0 1 TIGR01071 rplO_bact: ribosomal protein uL15
Domain annotation for each model (and alignments):
>> TIGR01071 rplO_bact: ribosomal protein uL15
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 167.8 5.9 6.4e-54 2.9e-50 1 144 [] 2 143 .. 2 143 .. 0.98
Alignments for each domain:
== domain 1 score: 167.8 bits; conditional E-value: 6.4e-54
TIGR01071 1 kLeeLkpakgakkkkkrvgRGigsGkGktsgrGqkGqkaRsggkvrlgFEGGqtPlyrrlPkrgfsnklkkelevvnvekleklfkdgevvtlekLle 98
kL+eLk + g+k k+++vgRG +sGkGkt++rG+kGq++Rsgg vr+gFEGGqtPl+rrlPk+gf+ ++k+++++n+++le+l + +++ e+L++
MMSYN1_0653 2 KLNELKYTPGSKTKATIVGRGMASGKGKTATRGHKGQNSRSGGGVRPGFEGGQTPLFRRLPKVGFTSLNQKQYTILNLSDLETLGLE--KIDHESLIN 97
79*********************************************************************************9888..9******** PP
TIGR01071 99 kklikkknklvKvlgkgklekkltvkaekvsksakakiekaggsve 144
k+ik++++l+K+l++g l+kk++vk++k+sk+ak +iek gg+ve
MMSYN1_0653 98 SKIIKNNASLIKILANGTLTKKVDVKVNKISKAAKDAIEKLGGKVE 143
*******************************************985 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (145 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 180 (0.040107); expected 89.8 (0.02)
Passed bias filter: 84 (0.0187166); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1041.13
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0653 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0654 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0654.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0654/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0654 [L=254]
Description: rpsE_bact: ribosomal protein S5 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-65 216.6 7.1 3.4e-65 216.6 7.1 1.6 2 TIGR01021 rpsE_bact: ribosomal protein uS5
6.4e-34 115.2 6.7 1.4e-33 114.1 6.6 1.5 1 TIGR01020 uS5_euk_arch: ribosomal protein uS5
------ inclusion threshold ------
0.07 11.3 5.6 0.036 12.2 2.3 2.0 3 TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydro
4.1 5.3 8.9 0.21 9.5 0.9 2.1 2 TIGR02563 cas_Csy4: CRISPR-associated endoribonuclease Cas6/
Domain annotation for each model (and alignments):
>> TIGR01021 rpsE_bact: ribosomal protein uS5
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 216.6 7.1 3e-68 3.4e-65 1 150 [. 45 194 .. 45 200 .. 0.98
2 ? -2.7 0.3 0.98 1.1e+03 62 63 .. 227 228 .. 206 249 .. 0.45
Alignments for each domain:
== domain 1 score: 216.6 bits; conditional E-value: 3e-68
TIGR01021 1 eeeleervvkvnRvskvvkGGrklsfsalvvvGdkkGkvGfGvgkakevteaikkavekakknlikvellegtikhevigksgaakvllkpakeGtGv 98
++e+ee+vv+++Rv+kv+kGGr+++f+a+vvvG+kkG vG+G+gka+ev+eaikka+++akknl++v+l+++t++hev g++ga+k+l+kpak GtG+
MMSYN1_0654 45 KDEFEEKVVTIRRVTKVTKGGRHFRFAAVVVVGNKKGLVGMGTGKANEVPEAIKKAIKEAKKNLVSVTLRNTTVPHEVLGTFGAGKILIKPAKVGTGI 142
579*********************************************************************************************** PP
TIGR01021 99 iaGgavravlelaGvkdilakslGsnnpinvvratldaleklksaekvaekr 150
iaGg++rav+elaG++d++akslGsnn+in++rat+++l+++++ ++v e r
MMSYN1_0654 143 IAGGPARAVIELAGISDVYAKSLGSNNAINMIRATFEGLSSMQTLKRVQELR 194
************************************************9988 PP
== domain 2 score: -2.7 bits; conditional E-value: 0.98
TIGR01021 62 kn 63
k+
MMSYN1_0654 227 KK 228
22 PP
>> TIGR01020 uS5_euk_arch: ribosomal protein uS5
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 114.1 6.6 1.2e-36 1.4e-33 51 204 .. 49 191 .. 36 198 .. 0.94
Alignments for each domain:
== domain 1 score: 114.1 bits; conditional E-value: 1.2e-36
TIGR01020 51 eeevldvslvqkmtksGrrtrfralvvvGnkdGyvGlGkgkakevatairkaiakaklniikvrrgcGsWecklgkehsvPfkveGksGsvrvrliPa 148
ee+v+ + v k tk Gr+ rf a+vvvGnk+G vG+G+gka+ev ai+kai++ak+n++ v ++ +vP +v G+ G+ ++ + Pa
MMSYN1_0654 49 EEKVVTIRRVTKVTKGGRHFRFAAVVVVGNKKGLVGMGTGKANEVPEAIKKAIKEAKKNLVSVTL----------RNTTVPHEVLGTFGAGKILIKPA 136
679***********************************************************987..........789******************** PP
TIGR01020 149 PkGvGlvagdvakkvlrlaGiedvytktkGetkttvnfakatfealkktylvkaae 204
G+G++ag a++v++laGi+dvy+k+ G+ + ++n+++atfe l++++++k+ +
MMSYN1_0654 137 KVGTGIIAGGPARAVIELAGISDVYAKSLGSNN-AINMIRATFEGLSSMQTLKRVQ 191
******************************875.68************99888754 PP
>> TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 0.0 0.66 7.4e+02 64 64 .. 40 40 .. 5 102 .. 0.57
2 ? -0.6 0.0 0.27 3.1e+02 62 86 .. 92 116 .. 40 165 .. 0.68
3 ? 12.2 2.3 3.2e-05 0.036 37 112 .. 173 247 .. 158 253 .. 0.86
Alignments for each domain:
== domain 1 score: -1.8 bits; conditional E-value: 0.66
TIGR02009 64 s 64
+
MMSYN1_0654 40 K 40
1 PP
== domain 2 score: -0.6 bits; conditional E-value: 0.27
TIGR02009 62 elseekieqlaerknelyrellrlt 86
e+ e ++++ e+k++l++ lr+t
MMSYN1_0654 92 EVPEAIKKAIKEAKKNLVSVTLRNT 116
4444455666777777776666633 PP
== domain 3 score: 12.2 bits; conditional E-value: 3.2e-05
TIGR02009 37 qineslkGlkredivrailksrgskelseekieqlaerknelyrellrltgaevlpgienlleelkkkkiavalgs 112
i++ ++Gl+++++++++ ++r +k+++++k++ + e+k + ++++ ++++++v++++ + ++e +++ ++v + +
MMSYN1_0654 173 MIRATFEGLSSMQTLKRVQELRYGKTFDTQKVKPV-EQKVAEVKSVEKKQPKQVVKKVTVKKAENQENTVEVITNA 247
567899****************999******8887.568888999999************9999999999987655 PP
>> TIGR02563 cas_Csy4: CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.1 1.6 0.14 1.6e+02 87 119 .. 13 44 .. 1 74 [. 0.47
2 ? 9.5 0.9 0.00019 0.21 49 130 .. 163 249 .. 153 254 .] 0.71
Alignments for each domain:
== domain 1 score: 0.1 bits; conditional E-value: 0.14
TIGR02563 87 kvpadkvkratvrrkqkkssaarlkkrlerrql 119
+++ + v++a+ k++k+ + r++ +++++q+
MMSYN1_0654 13 EMNSN-VEKASTQVKETKKFERRTRPQSKSKQV 44
33444.333333333333333333333332222 PP
== domain 2 score: 9.5 bits; conditional E-value: 0.00019
TIGR02563 49 etlGsklrlfataedldkLqsrrwlsgls.....dyvkiseiskvpadkvkratvrrkqkkssaarlkkrlerrqlindEearkkik 130
+ lGs+ + ++ + L s + l++++ + +++++v+++ ++ ++v +kq k+ ++++ + +++q + E++ + +
MMSYN1_0654 163 KSLGSNNAINMIRATFEGLSSMQTLKRVQelrygKTFDTQKVKPVEQKVAEVKSVEKKQPKQVVKKVTVKKAENQENTVEVITNAET 249
567777777777777888888888888886623333556677777777777788888888888888888888888888887765544 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (254 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 635 (0.141488); expected 89.8 (0.02)
Passed bias filter: 97 (0.0216132); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1823.77
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0654 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0655 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0655.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0655/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0655 [L=116]
Description: L18_bact: ribosomal protein L18 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.2e-43 144.4 3.0 4.7e-43 144.2 3.0 1.0 1 TIGR00060 L18_bact: ribosomal protein uL18
0.00088 17.7 0.3 0.001 17.4 0.3 1.2 1 TIGR03632 uS11_bact: ribosomal protein uS11
Domain annotation for each model (and alignments):
>> TIGR00060 L18_bact: ribosomal protein uL18
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 144.2 3.0 2.1e-46 4.7e-43 1 114 [] 5 116 .] 5 116 .] 0.97
Alignments for each domain:
== domain 1 score: 144.2 bits; conditional E-value: 2.1e-46
TIGR00060 1 kksarlrRkkRirkklretgeanrprlvvfrsnrhiyaqviddsksevlasastlekklkltgnkdaakkvGklvAerllkkgikdvvfDrgGykYHG 98
k +ar+rR+ R+r+k+ +t+ +rprl+vf+sn ++yaq+idd+k+++l+sastl+ +lk++ n+ aa+kv + +A+++l+++i++vvfDr+Gy+YHG
MMSYN1_0655 5 KAEARKRRHFRVRQKVVGTA--ERPRLNVFKSNTNFYAQIIDDTKGVTLVSASTLKMDLKSKSNTLAAQKVAEEIAKKALAANITQVVFDRNGYLYHG 100
5789************7666..6*************************************************************************** PP
TIGR00060 99 rvaalAeaaReaGlnf 114
+++a+Ae+aRe+Gl+f
MMSYN1_0655 101 KIKAFAETARENGLKF 116
**************98 PP
>> TIGR03632 uS11_bact: ribosomal protein uS11
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.4 0.3 4.6e-07 0.001 15 76 .. 32 92 .. 18 115 .. 0.80
Alignments for each domain:
== domain 1 score: 17.4 bits; conditional E-value: 4.6e-07
TIGR03632 15 katfnntivt.vtdekGnvlswasaGavgfkGskkstpyaaqlaaekaakkakelglkevevl 76
+ n + + d+kG +l as+ ++ k ks + aaq +ae++akka + + +v
MMSYN1_0655 32 FKSNTNFYAQiIDDTKGVTLVSASTLKMDLK--SKSNTLAAQKVAEEIAKKALAANITQVVFD 92
5555666655156789*99999999999998..58999****************999998655 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (116 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 239 (0.0532531); expected 89.8 (0.02)
Passed bias filter: 101 (0.0225045); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 925.45
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0655 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0656 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0656.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0656/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0656 [L=180]
Description: L6_bact: ribosomal protein L6 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.2e-73 242.5 5.3 5.8e-73 242.3 5.3 1.0 1 TIGR03654 L6_bact: ribosomal protein uL6
4.9e-25 86.3 0.3 6.2e-25 86.0 0.3 1.1 1 TIGR03653 uL6_arch: ribosomal protein uL6
Domain annotation for each model (and alignments):
>> TIGR03654 L6_bact: ribosomal protein uL6
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 242.3 5.3 2.6e-76 5.8e-73 1 175 [] 2 177 .. 2 177 .. 0.99
Alignments for each domain:
== domain 1 score: 242.3 bits; conditional E-value: 2.6e-76
TIGR03654 1 srigkkpieipagvevkve.gekvtvkgpkgelslklkeevkvkvednkivvkrkedskeakalhGltralinnmveGvseGfekkLelvGvGYraql 97
srig++ ++ip+gvevk++ ++ +t++g+kg+ls+++++ +k++ve+nk+++kr +++k++k+lhG+t++l++ m++GvseGf+k+L+++GvGY+a++
MMSYN1_0656 2 SRIGNRLLQIPNGVEVKIAeNNLITITGSKGTLSKQFSPLIKIEVEENKLITKRLNEQKHTKQLHGTTNSLLQGMLTGVSEGFKKELQITGVGYKAAV 99
8*****************94579*************************************************************************** PP
TIGR03654 98 kgkklelslGyshpveveipegikvevekqteivvkgidkqkvgqvaaeiralrkpepYkgKGiryadevvrrKegkk 175
+g+kl+lslGyshpve+eip+g++++ k+te+v++gidkq+vgqvaa+ira+rkpepYkgKGi+y++e++ rKegk+
MMSYN1_0656 100 NGSKLNLSLGYSHPVEFEIPKGVEIQAVKPTELVITGIDKQLVGQVAANIRAYRKPEPYKGKGIKYKNETIIRKEGKA 177
****************************************************************************95 PP
>> TIGR03653 uL6_arch: ribosomal protein uL6
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 86.0 0.3 2.8e-28 6.2e-25 3 149 .. 8 151 .. 6 158 .. 0.91
Alignments for each domain:
== domain 1 score: 86.0 bits; conditional E-value: 2.8e-28
TIGR03653 3 eieiPegvsvsi.eknevkvkgpkgeverelkypkieisveddkvvletekarkkekalvgtykshiknmikGvtegfeyklkvvYaHFPmqvkvegn 99
++iP+gv+v+i e+n ++++g+kg+++++++ p i+i+ve++k++ + +++k++k+l gt +s ++ m++Gv+egf+ +l+++ + v+g
MMSYN1_0656 8 LLQIPNGVEVKIaENNLITITGSKGTLSKQFS-PLIKIEVEENKLITKRLNEQKHTKQLHGTTNSLLQGMLTGVSEGFKKELQITGVG--YKAAVNGS 102
589********9345689************96.99*************************************************7665..578899** PP
TIGR03653 100 kvvienflGekaprtakilkdvkvk.vkgeevvvegidkEkvgqtaanieq 149
k+ ++ lG +p +i+k+v+++ vk e+v++gidk vgq+aani +
MMSYN1_0656 103 KLNLS--LGYSHPVEFEIPKGVEIQaVKPTELVITGIDKQLVGQVAANIRA 151
99886..*****************857788*******************86 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (180 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 144 (0.0320856); expected 89.8 (0.02)
Passed bias filter: 86 (0.0191622); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1230.89
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0656 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0657 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0657.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0657/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0657 [L=129]
Description: rpsH 4=Probable Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (129 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 228 (0.0508021); expected 89.8 (0.02)
Passed bias filter: 163 (0.0363191); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 926.25
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0657 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0658 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0658.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0658/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0658 [L=61]
Description: rpsN 4=Probable Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.074 11.4 4.1 0.046 12.1 0.6 1.8 2 TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein
Domain annotation for each model (and alignments):
>> TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.1 0.6 1e-05 0.046 8 40 .. 4 36 .. 2 39 .. 0.87
2 ? 1.1 0.1 0.028 1.3e+02 2 13 .. 39 50 .. 38 58 .. 0.86
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 1e-05
TIGR04104 8 ekfsykellkslfskkkkikCpnCgekqyltak 40
++++ k++ + f+++++++C +Cg + + +k
MMSYN1_0658 4 KSLKVKQAKHQKFNVRNYTRCNHCGRPHAVLKK 36
788999999999*************99987665 PP
== domain 2 score: 1.1 bits; conditional E-value: 0.028
TIGR04104 2 kCknCkekfsyk 13
+C C +kf y+
MMSYN1_0658 39 ICRLCFRKFAYE 50
6999*****997 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (61 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 177 (0.0394385); expected 89.8 (0.02)
Passed bias filter: 144 (0.0320856); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 437.99
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0658 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0659 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0659.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0659/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0659 [L=180]
Description: rplE 4=Probable Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (180 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 158 (0.035205); expected 89.8 (0.02)
Passed bias filter: 113 (0.0251783); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1360.46
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0659 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0660 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0660.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0660/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0660 [L=108]
Description: rplX_bact: ribosomal protein L24 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.2e-22 75.4 8.6 1e-21 75.3 8.6 1.0 1 TIGR01079 rplX_bact: ribosomal protein uL24
1.3e-06 26.7 2.4 2.9e-06 25.6 1.8 1.9 1 TIGR01080 rplX_A_E: ribosomal protein uL24
0.003 15.6 0.2 0.005 14.8 0.1 1.5 1 TIGR00405 KOW_elon_Spt5: transcription elongation factor Spt
Domain annotation for each model (and alignments):
>> TIGR01079 rplX_bact: ribosomal protein uL24
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.3 8.6 7e-25 1e-21 2 104 .] 4 104 .. 3 104 .. 0.93
Alignments for each domain:
== domain 1 score: 75.3 bits; conditional E-value: 7e-25
TIGR01079 2 akikkgDtVlvisGkdkGkkGkvlkvlpkkdkviVegvnlvkkhvkpkeekekeggiiekEapidisnvalvdkkt.kkatrvgirieedkkkvRvlk 98
++i kgD V+vi+G +kG+ G +++++++k+ v V+g+ vkkhvkp++e + eggi + a ++isnval d+k+ ++ t+vg+ i ++ kkvR+++
MMSYN1_0660 4 SRILKGDVVKVIAGSHKGQIGPITSITKDKQWVSVQGIT-VKKHVKPTNEDS-EGGIKDIPAKLHISNVALQDPKNkDQVTKVGFEIIDG-KKVRIAR 98
7999**********************************6.79******9998.7*******************9761578********96.******* PP
TIGR01079 99 ksgeii 104
ks +i
MMSYN1_0660 99 KSKTQI 104
*98765 PP
>> TIGR01080 rplX_A_E: ribosomal protein uL24
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.6 1.8 2e-09 2.9e-06 41 107 .. 5 81 .. 2 93 .. 0.74
Alignments for each domain:
== domain 1 score: 25.6 bits; conditional E-value: 2e-09
TIGR01080 41 pvrkgdkvrilrGdfkGkeGkvlkvdlkryriyvegvtkekv........dG..tevavpihpsnvmiiklklddek 107
++ kgd v+++ G+ kG+ G ++++ + + + v+g+t++k +G ++++ ++h snv + + k++d++
MMSYN1_0660 5 RILKGDVVKVIAGSHKGQIGPITSITKDKQWVSVQGITVKKHvkptnedsEGgiKDIPAKLHISNVALQDPKNKDQV 81
688***********************************998433332211222235666677777776666666654 PP
>> TIGR00405 KOW_elon_Spt5: transcription elongation factor Spt5
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.8 0.1 3.4e-06 0.005 85 120 .. 4 39 .. 1 50 [. 0.89
Alignments for each domain:
== domain 1 score: 14.8 bits; conditional E-value: 3.4e-06
TIGR00405 85 esikkGdvveiisGpfkGerakvirvdeakeevtle 120
++i kGdvv++i+G kG+ + + + k+ v ++
MMSYN1_0660 4 SRILKGDVVKVIAGSHKGQIGPITSITKDKQWVSVQ 39
6899*************************9999876 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (108 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 135 (0.0300802); expected 89.8 (0.02)
Passed bias filter: 66 (0.0147059); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 738.54
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0660 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0661 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0661.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0661/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0661 [L=122]
Description: rplN_bact: ribosomal protein L14 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-49 165.2 1.8 1.3e-49 165.1 1.8 1.0 1 TIGR01067 rplN_bact: ribosomal protein uL14
1.2e-30 104.1 1.8 1.3e-30 103.9 1.8 1.0 1 TIGR03673 uL14_arch: 50S ribosomal protein uL14
Domain annotation for each model (and alignments):
>> TIGR01067 rplN_bact: ribosomal protein uL14
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 165.1 1.8 5.9e-53 1.3e-49 1 122 [] 1 122 [] 1 122 [] 0.99
Alignments for each domain:
== domain 1 score: 165.1 bits; conditional E-value: 5.9e-53
TIGR01067 1 miqkksrlkvaDnsGakkvecikvlggskkryakvGdvivvvvkkaipkkkvkkgdvvkavivrtkkevrRkdGstvkfddnacvllnkkkePlGtRi 98
miq+ s+lkvaDnsGak+v++i+ lggs ++ + +Gd+i+++v a+p +kkg+vvkavivrt +e+rR+dG+++kf +na+vl++++k P+GtRi
MMSYN1_0661 1 MIQTLSKLKVADNSGAKEVRVIRNLGGSVRKFSGIGDIIICSVISATPGAVIKKGQVVKAVIVRTTRELRREDGTYIKFSENAAVLIKEDKTPRGTRI 98
9************************************************************************************************* PP
TIGR01067 99 fgpvarelrekgflkivslakevi 122
fgp+are++e+gf ki+sla+ev+
MMSYN1_0661 99 FGPIAREIKEAGFAKIASLAPEVL 122
**********************96 PP
>> TIGR03673 uL14_arch: 50S ribosomal protein uL14
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 103.9 1.8 5.8e-34 1.3e-30 11 128 .. 2 119 .. 1 122 [] 0.88
Alignments for each domain:
== domain 1 score: 103.9 bits; conditional E-value: 5.8e-34
TIGR03673 11 levgalvkvaDnsGaklvevisvkkykgvkrrlpaagvgDlvvvsvkkGtpel...rkqvlkavvvrqrkeyrrpdGtrvkfeDnavvivteegepkG 105
+++ +++kvaDnsGak+v+vi ++ g r+ g+gD+++ sv tp + qv+kav+vr +e rr dGt +kf +na+v+++e+ +p+G
MMSYN1_0661 2 IQTLSKLKVADNSGAKEVRVI--RNLGGSVRKF--SGIGDIIICSVISATPGAvikKGQVVKAVIVRTTRELRREDGTYIKFSENAAVLIKEDKTPRG 95
577899**************8..5677877765..79*********9999974222569*************************************** PP
TIGR03673 106 seikgpvareaaer.fpkiasias 128
+ i gp+are+ e f+kias+a
MMSYN1_0661 96 TRIFGPIAREIKEAgFAKIASLAP 119
***********98559****9985 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (122 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 155 (0.0345365); expected 89.8 (0.02)
Passed bias filter: 110 (0.0245098); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 922.09
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0661 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0662 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0662.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0662/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0662 [L=85]
Description: S17_bact: 30S ribosomal protein S17 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-35 118.7 4.6 2.2e-35 118.5 4.6 1.0 1 TIGR03635 uS17_bact: ribosomal protein uS17
3.2e-13 47.6 2.9 4e-13 47.2 2.9 1.0 1 TIGR03630 uS17_arch: ribosomal protein uS17
Domain annotation for each model (and alignments):
>> TIGR03635 uS17_bact: ribosomal protein uS17
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 118.5 4.6 9.9e-39 2.2e-35 1 72 [] 6 77 .. 6 77 .. 0.99
Alignments for each domain:
== domain 1 score: 118.5 bits; conditional E-value: 9.9e-39
TIGR03635 1 kktlvGvVvsdkmdktvvVkverkvkhplYkKivkrtkkykaHDeeneakvGDvVeieetrPlSktKrwrlv 72
+++l+G+Vvsdkmdkt++V ve++++hp+YkK+vk +kkykaHDe++ a++GD+Vei+etrPlSktK++rlv
MMSYN1_0662 6 RRVLIGKVVSDKMDKTITVLVETYKNHPIYKKRVKYSKKYKAHDENQVAQMGDKVEIMETRPLSKTKNFRLV 77
699*******************************************************************97 PP
>> TIGR03630 uS17_arch: ribosomal protein uS17
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.2 2.9 1.8e-16 4e-13 28 100 .. 7 78 .. 3 80 .. 0.93
Alignments for each domain:
== domain 1 score: 47.2 bits; conditional E-value: 1.8e-16
TIGR03630 28 qvlegkvvkkkmektvvvereylkyvkkyeryekrrskihahlPeCievkeGdkvliaetrplsktisfvvle 100
+vl gkvv++km+kt++v e +k ++ y++ k ++k++ah + + ++ Gdkv i+etrplskt++f ++
MMSYN1_0662 7 RVLIGKVVSDKMDKTITVLVETYKNHPIYKKRVKYSKKYKAHDENQV-AQMGDKVEIMETRPLSKTKNFRLVR 78
6899**************************************98876.799******************9886 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (85 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 189 (0.0421123); expected 89.8 (0.02)
Passed bias filter: 82 (0.0182709); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 642.44
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0662 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0663 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0663.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0663/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0663 [L=138]
Description: L29: ribosomal protein L29 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.1e-20 69.6 3.7 4.1e-20 69.6 3.7 2.2 2 TIGR00012 L29: ribosomal protein uL29
------ inclusion threshold ------
0.018 12.3 1.5 0.025 11.8 0.8 1.5 2 TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein]
Domain annotation for each model (and alignments):
>> TIGR00012 L29: ribosomal protein uL29
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.6 3.7 1.8e-23 4.1e-20 1 56 [] 8 63 .. 8 63 .. 0.99
2 ? -0.4 1.1 0.13 2.9e+02 17 34 .. 108 125 .. 79 129 .. 0.63
Alignments for each domain:
== domain 1 score: 69.6 bits; conditional E-value: 1.8e-23
TIGR00012 1 elrekskeELakklkelKkeLfeLRfqkatgqlekphrIrqvRrdIARllTvlrek 56
+lr++s++EL k+ +++++eLf L+fq+a+g le++hrI++++++IAR+ +l+ek
MMSYN1_0663 8 DLRNLSVDELIKTNESKRAELFALKFQAAVGSLEQTHRIKEIKKEIARIELALSEK 63
79****************************************************98 PP
== domain 2 score: -0.4 bits; conditional E-value: 0.13
TIGR00012 17 lKkeLfeLRfqkatgqle 34
+eL e qka++ +e
MMSYN1_0663 108 SQTELNEADIQKAMQAAE 125
345666666677776555 PP
>> TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.0 0.9 3.9e-05 0.087 197 244 .. 61 109 .. 7 119 .. 0.74
2 ? 11.8 0.8 1.1e-05 0.025 198 260 .. 62 125 .. 54 136 .. 0.78
Alignments for each domain:
== domain 1 score: 10.0 bits; conditional E-value: 3.9e-05
TIGR03151 197 kesevhpnykekvlkakdrdtvvtgrkvGhpvrvlknklt.rkyeelek 244
+e ++ + +kv+ka +v ++k+G+ vr+ + k+ +y + ++
MMSYN1_0663 61 SEKRLSGENTNKVIKADYNKAVAEAEKAGKEVRAKQRKFLeEQYGQQSQ 109
4555666677888888888888888888888888877754145655555 PP
== domain 2 score: 11.8 bits; conditional E-value: 1.1e-05
TIGR03151 198 esevhpnykekvlkakdrdtvvtgrkvGhpvrvlknkl.trkyeelekegadleeleklgaGal 260
e ++ + +kv+ka +v ++k+G+ vr+ + k+ +y + ++ + + ++k + a
MMSYN1_0663 62 EKRLSGENTNKVIKADYNKAVAEAEKAGKEVRAKQRKFlEEQYGQQSQTELNEADIQKAMQAAE 125
6667778889***********************9988615688888887777777777666554 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (138 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 407 (0.0906863); expected 89.8 (0.02)
Passed bias filter: 82 (0.0182709); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 990.87
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0663 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0664 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0664.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0664/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0664 [L=137]
Description: rplP_bact: ribosomal protein L16 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-58 194.4 2.6 1.7e-58 194.2 2.6 1.0 1 TIGR01164 rplP_bact: ribosomal protein uL16
2.1e-10 38.5 1.0 7.7e-10 36.7 0.9 1.8 1 TIGR00279 uL16_euk_arch: ribosomal protein uL16
0.002 15.9 0.0 0.0036 15.1 0.0 1.5 1 TIGR03776 RPE5: rickettsial palindromic element RPE5 domain
Domain annotation for each model (and alignments):
>> TIGR01164 rplP_bact: ribosomal protein uL16
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 194.2 2.6 1.1e-61 1.7e-58 1 126 [] 2 127 .. 2 127 .. 0.99
Alignments for each domain:
== domain 1 score: 194.2 bits; conditional E-value: 1.1e-61
TIGR01164 1 lsPkrtkyrkkqkgrlkGkakkgnkvafGeyglkalekawitarqieaarvaltravkrggklWirifpdkpvtkkpaetrmGkGkGsvekwvavvkp 98
l+Pkrtkyrk ++++++Gkak++++++fGe+gl al++awi+++qieaar+a+tr++kr+gk+W+rifp++++tkkpae+rmG+GkG++ekwvavvk+
MMSYN1_0664 2 LQPKRTKYRKPHRVSYEGKAKGAKEINFGEFGLMALDGAWIDNHQIEAARIAMTRYMKRDGKIWMRIFPHMAMTKKPAEVRMGSGKGNPEKWVAVVKK 99
79************************************************************************************************ PP
TIGR01164 99 GkvlfelagveeevarealklaasklPi 126
G+++fe+a v+e+vareal+la +klPi
MMSYN1_0664 100 GTIMFEVAQVNEQVAREALRLAMHKLPI 127
***************************8 PP
>> TIGR00279 uL16_euk_arch: ribosomal protein uL16
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.7 0.9 5.2e-13 7.7e-10 55 163 .. 40 132 .. 23 137 .] 0.83
Alignments for each domain:
== domain 1 score: 36.7 bits; conditional E-value: 5.2e-13
TIGR00279 55 vqirenaleaarvaankyltrvaGrsayklkirvyPhhilrenkmatgaGadriqdGmrkafGkPvgtaarvkkgqkilsvrvkdekfevakealrra 152
i ++ +eaar+a +y++r k+ +r++Ph + +++ + G + G P +a vkkg++++ v + + +va+ealr a
MMSYN1_0664 40 AWIDNHQIEAARIAMTRYMKRDG-----KIWMRIFPHMAMTKKPAEVRMG---------SGKGNPEKWVAVVKKGTIMFEVA--QVNEQVAREALRLA 121
5688899************8753.....799******9887777655443.........3459*************999775..667789******** PP
TIGR00279 153 amklPvptkiv 163
klP ++k v
MMSYN1_0664 122 MHKLPIRCKFV 132
*********87 PP
>> TIGR03776 RPE5: rickettsial palindromic element RPE5 domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.1 0.0 2.4e-06 0.0036 8 35 .. 104 131 .. 97 132 .. 0.89
Alignments for each domain:
== domain 1 score: 15.1 bits; conditional E-value: 2.4e-06
TIGR03776 8 fnleksnesvsrgAeRikireHprtyKd 35
f+ ++ne+v r+A R ++ p+++K+
MMSYN1_0664 104 FEVAQVNEQVAREALRLAMHKLPIRCKF 131
7888***********************8 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (137 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 97 (0.0216132); expected 89.8 (0.02)
Passed bias filter: 71 (0.01582); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 936.85
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0664 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0665 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0665.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0665/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0665 [L=233]
Description: rpsC_bact: ribosomal protein S3 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9e-79 262.1 4.7 1.1e-78 261.8 4.7 1.0 1 TIGR01009 rpsC_bact: ribosomal protein uS3
4.9e-21 73.3 2.0 6.2e-21 73.0 2.0 1.1 1 TIGR01008 uS3_euk_arch: ribosomal protein uS3
Domain annotation for each model (and alignments):
>> TIGR01009 rpsC_bact: ribosomal protein uS3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 261.8 4.7 4.7e-82 1.1e-78 1 211 [. 1 213 [. 1 214 [. 0.97
Alignments for each domain:
== domain 1 score: 261.8 bits; conditional E-value: 4.7e-82
TIGR01009 1 mGqkvnplglRlgitkdwkslwyadkkeyaellkeDlkirellkkelkkasiseveiereadkvevtihtarPglvigkkgkeieklkkelkklvgsk 98
mGqkv+p+ lRlgi++dw+ +wya+k +y ++l++D kir+ l k lk+a +s++ ier+++ +++ i+tarP++v+g++gk+iek+ +++k+v++k
MMSYN1_0665 1 MGQKVSPNVLRLGIVRDWENRWYAEKDQYVKWLDQDIKIRTALFKLLKDAAVSKIDIERTTKDLTLFIKTARPAIVLGQEGKNIEKIVLAVRKTVKNK 98
9***********************************************************************************************98 PP
TIGR01009 99 e..vkinikevkkpeldaklvaeeiakqlekRvsfRkamkkaiqkalkagakGvkvkvsGRlaGaeiaRselykeGrvPLhtlRadiDYalaeaktty 194
+ v++++ e+k+p++da+lva+ i +q+++R+sfR++ k ai+kalkagakG+k vsGRl+G e+aR+e y eG vPL+tlR +iDYal+ea tty
MMSYN1_0665 99 KliVNVRVIEIKSPDADATLVARWIGEQISNRASFRTVQKLAIKKALKAGAKGIKTAVSGRLGGVEMARTEGYLEGSVPLSTLRNNIDYALYEAPTTY 196
723566788***************************************************************************************** PP
TIGR01009 195 GvigvkvWifkgevlek 211
G igvkvWi++gev +k
MMSYN1_0665 197 GQIGVKVWINHGEVFKK 213
*************9876 PP
>> TIGR01008 uS3_euk_arch: ribosomal protein uS3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 73.0 2.0 2.8e-24 6.2e-21 13 184 .. 37 209 .. 26 218 .. 0.90
Alignments for each domain:
== domain 1 score: 73.0 bits; conditional E-value: 2.8e-24
TIGR01008 13 lkideflkkeleeaGysgvdvrktplgtkviifaerpglviGrrGrrireltellkkkfglenp..qieveevenpeldakvqaekiaralerGlhfr 108
+ki l k l++a s++d+++t+ ++ i ++rp++v+G++G+ i+++ ++k+ ++ +++v e+++p+ da ++a i +++ + fr
MMSYN1_0665 37 IKIRTALFKLLKDAAVSKIDIERTTKDLTLFIKTARPAIVLGQEGKNIEKIVLAVRKTVKNKKLivNVRVIEIKSPDADATLVARWIGEQISNRASFR 134
5666677788999********************************************88877761156677999************************ PP
TIGR01008 109 rvayaavrrimeaGakGvevtisGklts.eraktekfadGylvksGepaeelvdkgtaiallkkGvlGvkvkimrpd 184
v a+++ ++aGakG++ +sG+l + e a+te + +G + s + +d + a + G +Gvkv i + +
MMSYN1_0665 135 TVQKLAIKKALKAGAKGIKTAVSGRLGGvEMARTEGYLEGSVPLST--LRNNIDYALYEAPTTYGQIGVKVWINHGE 209
**************************97589***********9875..5678*******************997655 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (233 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 196 (0.043672); expected 89.8 (0.02)
Passed bias filter: 95 (0.0211676); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1672.99
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0665 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0666 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0666.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0666/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0666 [L=111]
Description: rplV_bact: ribosomal protein L22 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8e-38 126.8 2.1 9.6e-38 126.6 2.1 1.0 1 TIGR01044 rplV_bact: ribosomal protein uL22
1.1e-18 65.6 1.6 1e-15 55.9 0.1 2.0 2 TIGR01038 uL22_arch_euk: ribosomal protein uL22
Domain annotation for each model (and alignments):
>> TIGR01044 rplV_bact: ribosomal protein uL22
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.6 2.1 4.3e-41 9.6e-38 1 103 [] 5 107 .. 5 107 .. 0.98
Alignments for each domain:
== domain 1 score: 126.6 bits; conditional E-value: 4.3e-41
TIGR01044 1 akartvrisprkarlvidlirGkevaealdiLeftpkkaaelvekvlksaianaehnneldadelvvakvfvdeGPtlkrirprakGrasrirkrtsh 98
ak ++risprk rlv+d ir k v+ a+++L+ +k aae++ k l+sa+ana +nn+++ad+l v ++fv+eGPtlkr+rpra+Gra +i krtsh
MMSYN1_0666 5 AKLSMIRISPRKMRLVADTIRNKAVSVAVATLKNLNKDAAEPILKLLNSAVANAVNNNGMEADKLYVKTIFVNEGPTLKRFRPRAHGRAYEIFKRTSH 102
67889********************************************************************************************* PP
TIGR01044 99 itvvv 103
+ +vv
MMSYN1_0666 103 VVIVV 107
***98 PP
>> TIGR01038 uL22_arch_euk: ribosomal protein uL22
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.5 0.2 9.4e-05 0.21 12 47 .. 3 38 .. 1 41 [. 0.89
2 ! 55.9 0.1 4.6e-19 1e-15 81 146 .. 42 108 .. 38 110 .. 0.93
Alignments for each domain:
== domain 1 score: 9.5 bits; conditional E-value: 9.4e-05
TIGR01038 12 akasgrnlrvsfknavevarairGmkleeAkkyLed 47
aka+ + +r+s+++++ va ir + ++ A L++
MMSYN1_0666 3 AKAKLSMIRISPRKMRLVADTIRNKAVSVAVATLKN 38
9***********************999998877765 PP
== domain 2 score: 55.9 bits; conditional E-value: 4.6e-19
TIGR01038 81 kaakailklLknaeanA.eakgLdvekLkiiHiqankgpvlrrympRAfGRatprnsstthielvve 146
aa+ ilklL+ a anA ++ g++++kL+++ i +n gp+l+r+ pRA+GRa +++t+h+ +vv+
MMSYN1_0666 42 DAAEPILKLLNSAVANAvNNNGMEADKLYVKTIFVNEGPTLKRFRPRAHGRAYEIFKRTSHVVIVVS 108
6899************945689*******************************************97 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (111 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 158 (0.035205); expected 89.8 (0.02)
Passed bias filter: 84 (0.0187166); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 838.95
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0666 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0667 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0667.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0667/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0667 [L=88]
Description: rpsS_bact: ribosomal protein S19 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.9e-41 136.5 0.1 7.6e-41 136.3 0.1 1.0 1 TIGR01050 rpsS_bact: ribosomal protein uS19
8.2e-19 65.7 0.0 9.4e-19 65.5 0.0 1.0 1 TIGR01025 uS19_arch: ribosomal protein uS19
Domain annotation for each model (and alignments):
>> TIGR01050 rpsS_bact: ribosomal protein uS19
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 136.3 0.1 3.4e-44 7.6e-41 1 89 [. 1 86 [. 1 88 [] 0.92
Alignments for each domain:
== domain 1 score: 136.3 bits; conditional E-value: 3.4e-44
TIGR01050 1 msRslkkgpfvdkkllkkveklnekekkkviktwsRrstilPelvgltievynGkkfipvyiteemvGhklGefaptrkfkghaksdkk 89
m+Rslkkgpfvd++l+kkv++ ++ +viktwsRrsti+Pe++g+t+ vynGk+fipvyite+mvG klGefaptrkf gh +++ k
MMSYN1_0667 1 MARSLKKGPFVDESLFKKVTA---AKDGEVIKTWSRRSTIFPEFIGKTFGVYNGKEFIPVYITEDMVGNKLGEFAPTRKFGGHGDDKGK 86
9****************9765...56779******************************************************954433 PP
>> TIGR01025 uS19_arch: ribosomal protein uS19
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 65.5 0.0 4.2e-22 9.4e-19 56 120 .. 18 82 .. 2 85 .. 0.89
Alignments for each domain:
== domain 1 score: 65.5 bits; conditional E-value: 4.2e-22
TIGR01025 56 eatkgkkpevvrthlrdmiilpemvGlvvgvynGkefveveikpemiGhylgefaltrkkvkhga 120
+ t +k+ ev++t r i pe +G+++gvynGkef+ v i+ +m+G +lgefa+trk+ hg+
MMSYN1_0667 18 KVTAAKDGEVIKTWSRRSTIFPEFIGKTFGVYNGKEFIPVYITEDMVGNKLGEFAPTRKFGGHGD 82
245566789****************************************************9997 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (88 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 68 (0.0151515); expected 89.8 (0.02)
Passed bias filter: 60 (0.013369); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 631.86
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0667 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0668 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0668.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0668/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0668 [L=282]
Description: rplB_bact: ribosomal protein L2 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-131 434.8 8.3 3.3e-131 434.6 8.3 1.0 1 TIGR01171 rplB_bact: ribosomal protein uL2
Domain annotation for each model (and alignments):
>> TIGR01171 rplB_bact: ribosomal protein uL2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 434.6 8.3 7.3e-135 3.3e-131 1 274 [. 3 279 .. 3 280 .. 0.98
Alignments for each domain:
== domain 1 score: 434.6 bits; conditional E-value: 7.3e-135
TIGR01171 1 ikklkpvtpgrreavvldfee.ltkkskpeksLlkkkkkkkGrnnrGritvrhkggghkklyrvidfkrdkkeieakvasieydPnrsariaLllyad 97
ikk+k++t+grr+++++d + lt+k++peksL+ +k++k+GrnnrG it+rhkggghk++yr+idfkr+k++i +++++ieydPnr+a+i+L++y d
MMSYN1_0668 3 IKKYKSTTNGRRNMTTIDYSAvLTTKNNPEKSLVVSKNSKAGRNNRGLITTRHKGGGHKQKYRIIDFKRNKRDIFGTISTIEYDPNRNAFICLINYVD 100
79***************98872577899********************************************************************** PP
TIGR01171 98 GekryilaPkglkvgdtvvsgeeadikvgnalplkniPvGttvhnielkpgkGgqlvrsaGtsaqilakeg..kyvllrlpsgevrkvekeCratiGe 193
Gekryil kg++vg +vv++e+adikvgna plkniP Gt +hn+elkpgkGgq++rsaG+s+q+l+k++ kyv+lrl+sgevrkv +eC+atiGe
MMSYN1_0668 101 GEKRYILFAKGMQVGMKVVASENADIKVGNAAPLKNIPEGTLLHNVELKPGKGGQIARSAGSSVQLLGKDDdgKYVTLRLSSGEVRKVLAECYATIGE 198
*********************************************************************86669************************ PP
TIGR01171 194 vgnedhknvklGkaGrkrwlGvrPtvrGvamnPvdhPhGGGegrtskgrkkPvtPWGkptkgvktrkkkkksdklivkrrk 274
vgne++++v++GkaGr+rw+G+rPtvrG++mnP+dhPhGGGegr+++grk+PvtPWGk++ gvktr++kk+s+kliv++r+
MMSYN1_0668 199 VGNEEYNLVNWGKAGRNRWRGIRPTVRGSVMNPNDHPHGGGEGRAPIGRKSPVTPWGKKALGVKTRNTKKTSEKLIVRKRS 279
*******************************************************************************97 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (282 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 79 (0.0176025); expected 89.8 (0.02)
Passed bias filter: 59 (0.0131462); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 2024.82
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0668 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0669 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0669.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0669/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0669 [L=94]
Description: rplW 4=Probable Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-11 41.5 8.1 1.1e-09 36.5 8.1 2.1 1 TIGR03636 uL23_arch: ribosomal protein uL23
Domain annotation for each model (and alignments):
>> TIGR03636 uL23_arch: ribosomal protein uL23
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.5 8.1 2.4e-13 1.1e-09 1 55 [. 10 63 .. 10 94 .] 0.83
Alignments for each domain:
== domain 1 score: 36.5 bits; conditional E-value: 2.4e-13
TIGR03636 1 plvtEKalkliekenkltfiVdrkatKkdikeaveklfdvkVekvntlitpkgeK 55
p+ tEK+ k+n tf+Vd+ka+K +ik+ +e+ f+vkVe+v+t+ eK
MMSYN1_0669 10 PVLTEKSFAG-HKDNVYTFLVDKKANKVQIKKTFEEIFEVKVESVRTVNYDAKEK 63
7899**9987.569*********************************87655554 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (94 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 286 (0.0637255); expected 89.8 (0.02)
Passed bias filter: 120 (0.026738); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 642.80
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0669 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0670 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0670.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0670/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0670 [L=208]
Description: rplD_bact: 50S ribosomal protein L4 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.5e-76 253.2 4.0 2.9e-76 253.0 4.0 1.0 1 TIGR03953 rplD_bact: 50S ribosomal protein uL4
1.1e-12 45.9 3.7 2.2e-08 31.8 0.3 2.2 2 TIGR03672 rpl4p_arch: 50S ribosomal protein uL4
Domain annotation for each model (and alignments):
>> TIGR03953 rplD_bact: 50S ribosomal protein uL4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 253.0 4.0 1.3e-79 2.9e-76 1 187 [. 16 204 .. 16 205 .. 0.98
Alignments for each domain:
== domain 1 score: 253.0 bits; conditional E-value: 1.3e-79
TIGR03953 1 ielsdevfgvevneqllhevvkaqlanrrqgtaktktrseVsgggkKpyrQKgtGrARqGsirsplfrgGGvvfGpkpr.dysqklnkKvrrlAlrsa 97
i+l+d v+g+e+++q+++++v +q+a+ rqgt+k+ktr+eVsggg+Kp++QKgtGrARqGsir+p+++gGGv+fGp+p+ +y++++nkKvr+lA+rs+
MMSYN1_0670 16 IALNDYVWGIEPHQQAIYDTVISQQAALRQGTKKVKTRAEVSGGGRKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDiNYKKSVNKKVRALAFRSV 113
679*********************************************************************************************** PP
TIGR03953 98 LseklkegklvvvddlkleepkTkellkilkklgl.ekkvLivvdekdenlelsarNlpkvkvleveglnvydllkadkvvlteeavkkle 187
Ls k+ke++lv+vd++++++p+Tke++ ++k+l++ ++k+Liv++ek+e + +s++N+ +vk++++++lnv+dll+a+k+++teea+ ++e
MMSYN1_0670 114 LSLKVKENNLVIVDKFEFAKPSTKEMVVVMKNLKIdDQKTLIVTKEKEELVVKSSNNITGVKTISANQLNVFDLLNATKLLITEEAAIAVE 204
**************************************************************************************98776 PP
>> TIGR03672 rpl4p_arch: 50S ribosomal protein uL4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.8 0.3 9.6e-12 2.2e-08 1 133 [. 1 131 [. 1 152 [. 0.75
2 ! 15.5 0.4 9.2e-07 0.0021 193 245 .. 151 201 .. 141 206 .. 0.79
Alignments for each domain:
== domain 1 score: 31.8 bits; conditional E-value: 9.6e-12
TIGR03672 1 mkvkvydlegeeveeielPe.vFeeevRkDlikravlaaqtarlqpkG.adplaGkrtsaeslgsgrGvarvprlkessraarvpqavgGrkahpPkv 96
mk +v+d++g+ev+ei l + v+ e + i v+++q+a +q + ++ a + + +++G+ r ++ + r+pq +gG ++ P++
MMSYN1_0670 1 MKLQVLDIKGNEVKEIALNDyVWGIEPHQQAIYDTVISQQAALRQGTKkVKTRAEVSGGGRKPWKQKGTGRARQ-----GSIRAPQWKGGGVTFGPTP 93
799***************8647999*****************99954313444444444444445555554333.....35789************** PP
TIGR03672 97 ekklvekiNkkEkklairsAiaatakk.elvkaRgHvf 133
+ ++++++Nkk + la+rs ++ +k+ +lv +f
MMSYN1_0670 94 DINYKKSVNKKVRALAFRSVLSLKVKEnNLVIVDKFEF 131
*********************99765415665555555 PP
== domain 2 score: 15.5 bits; conditional E-value: 9.2e-07
TIGR03672 193 ksvLivvsd.deellkaarnlpGvdvvtvkelnvelLAPGtkpgRLtvftesai 245
+ Liv+++ +e ++k+++n++Gv +++++lnv +L ++ +L + e ai
MMSYN1_0670 151 QKTLIVTKEkEELVVKSSNNITGVKTISANQLNVFDLL---NATKLLITEEAAI 201
456899998677889*******************9995...4555666555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (208 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 310 (0.0690731); expected 89.8 (0.02)
Passed bias filter: 85 (0.0189394); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1493.48
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0670 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0671 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0671.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0671/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0671 [L=223]
Description: L3_bact: 50S ribosomal protein L3 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-79 263.8 5.4 2.7e-79 263.6 5.4 1.0 1 TIGR03625 L3_bact: 50S ribosomal protein uL3
2.4e-21 73.9 8.6 6.5e-19 65.9 3.5 3.1 2 TIGR03626 L3_arch: ribosomal protein uL3
Domain annotation for each model (and alignments):
>> TIGR03625 L3_bact: 50S ribosomal protein uL3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 263.6 5.4 1.2e-82 2.7e-79 1 202 [] 3 200 .. 3 200 .. 0.99
Alignments for each domain:
== domain 1 score: 263.6 bits; conditional E-value: 1.2e-82
TIGR03625 1 gllgkkvGmtqifteegklvpvtvievepnvvvqvktkekdgyeavqlgfgekkekkvnkpeaghfkkagveakrvlkefrveeaeelevgdeikv.d 97
g+lg+kv mtq+ft++g+lvpvtv+ev pn+v+qvkt ++dgy avqlg+++k+ + vnkpe ghfkka+ ++kr++ke+r++ +++e+g+ i+v d
MMSYN1_0671 3 GILGRKVEMTQVFTSAGQLVPVTVVEVLPNTVLQVKTIDSDGYVAVQLGTTDKRVNLVNKPELGHFKKANSNPKRFVKEIRNM--QGYELGQVINVsD 98
79*******************************************************************************97..8**********99 PP
TIGR03625 98 lfeegekvdvtgtskGkGfaGvikrhnfkggpasHGsskshRapGSigqrqtpgrvfkgkkmaGhlGnekvtvqnLevvkvdaeknlllvkGavpGak 195
+f +ge+vdvtg+skGkGfaG ikrhn+++gp++HGs +hR GS+g+ +r+fk kkm+Gh+Gn+k+t+qnLe++ +d+ +n++l+kG++pG+k
MMSYN1_0671 99 IFVSGEYVDVTGISKGKGFAGGIKRHNYARGPMAHGS-GYHRGIGSMGAII--NRIFKSKKMPGHMGNAKRTIQNLEIIAIDQPNNIMLIKGSIPGPK 193
*************************************.**********999..9******************************************** PP
TIGR03625 196 gslvlvk 202
+s+v +k
MMSYN1_0671 194 NSFVQIK 200
****997 PP
>> TIGR03626 L3_arch: ribosomal protein uL3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.3 0.3 0.00081 1.8 64 95 .. 20 49 .. 2 89 .. 0.70
2 ! 65.9 3.5 2.9e-22 6.5e-19 178 315 .. 89 207 .. 77 216 .. 0.83
Alignments for each domain:
== domain 1 score: 5.3 bits; conditional E-value: 0.00081
TIGR03626 64 vvvpvtvleaPplkvlairaYekdekgekvla 95
+vpvtv+e+ p +vl +++ ++d g+ +++
MMSYN1_0671 20 QLVPVTVVEVLPNTVLQVKTIDSD--GYVAVQ 49
579*******99999999987766..544444 PP
== domain 2 score: 65.9 bits; conditional E-value: 2.9e-22
TIGR03626 178 llgkeisvkdvfkeGelvDviavtkGkGfqGvvkRfgvkllkrkhkrkkkeRkvGtlgpwtpsrvrwtvpqaGqmGyhqRteynkrilkigedgeeit 275
lg+ i+v+d+f +Ge+vDv+++ kGkGf G +kR++ + h ++ +R +G++g++ r++ + ++G mG +Rt n i+ i++
MMSYN1_0671 89 ELGQVINVSDIFVSGEYVDVTGISKGKGFAGGIKRHNYARGPMAHG-SGYHRGIGSMGAIIN-RIFKSKKMPGHMGNAKRTIQNLEIIAIDQP----- 179
59***********************************998877776.566********8876.589999**********************97..... PP
TIGR03626 276 pkgGfvnYGlvrndyvlikGsvpGpskRlivlReaiRpkk 315
n+ +likGs+pGp+ +++++ i+ +
MMSYN1_0671 180 ------------NNIMLIKGSIPGPKNSFVQIKQNIKGMS 207
............5666777777777777777766666544 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (223 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 128 (0.0285205); expected 89.8 (0.02)
Passed bias filter: 84 (0.0187166); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1524.94
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0671 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0672 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0672.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0672/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0672 [L=102]
Description: rpsJ_bact: ribosomal protein S10 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.5e-42 139.8 0.3 7.3e-42 139.7 0.3 1.0 1 TIGR01049 rpsJ_bact: ribosomal protein uS10
1.4e-18 65.1 0.8 1.6e-18 64.9 0.8 1.0 1 TIGR01046 uS10_euk_arch: ribosomal protein uS10
Domain annotation for each model (and alignments):
>> TIGR01049 rpsJ_bact: ribosomal protein uS10
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 139.7 0.3 3.2e-45 7.3e-42 2 98 .. 5 101 .. 4 102 .] 0.99
Alignments for each domain:
== domain 1 score: 139.7 bits; conditional E-value: 3.2e-45
TIGR01049 2 kiriklksydkelldqsikkivetvkrtgakvkgpipLPtkkekytvlrsphvnkksreqfeirthkRlidivevnsktldaLmkldlpagvdveik 98
k+riklk+yd++++dqsi ki+++++ tgakv+gpipLPt+k+++t+lr++h++k+sreqfe+rthkRl++i++++ +t+d L++++lp+gvd+eik
MMSYN1_0672 5 KMRIKLKGYDHAIVDQSIVKIIQAAEGTGAKVRGPIPLPTEKQVITILRAVHKYKDSREQFEMRTHKRLLEILNPTAATMDILKRVQLPSGVDIEIK 101
89**********************************************************************************************9 PP
>> TIGR01046 uS10_euk_arch: ribosomal protein uS10
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.9 0.8 7.2e-22 1.6e-18 2 99 .] 5 102 .] 4 102 .] 0.91
Alignments for each domain:
== domain 1 score: 64.9 bits; conditional E-value: 7.2e-22
TIGR01046 2 karikltstnvkslekvceqlkkiaektgvklsGPvplPtkrlrvvtrksPdGeGsktwdrwelrihkrlidleadervlrqi.mkikvpedveieie 98
k+rikl++ ++ +++ + ++++ ae tg k++GP+plPt + ++++ ++ + + +++e+r hkrl+++ + + +i ++++p++v+iei+
MMSYN1_0672 5 KMRIKLKGYDHAIVDQSIVKIIQAAEGTGAKVRGPIPLPTEKQVITILRAVHK-YKDSREQFEMRTHKRLLEILNPTAATMDIlKRVQLPSGVDIEIK 101
89*********************************************999875.466789************99988776665168***********8 PP
TIGR01046 99 l 99
l
MMSYN1_0672 102 L 102
6 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (102 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 152 (0.0338681); expected 89.8 (0.02)
Passed bias filter: 110 (0.0245098); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 770.93
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0672 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0684 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0684.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0684/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0684 [L=288]
Description: folD 4=Probable Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-05 22.8 0.2 6.2e-05 20.2 0.2 2.1 1 TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein Py
0.0015 16.1 0.2 0.0043 14.6 0.0 1.7 2 TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
0.0048 13.8 0.4 0.0088 13.0 0.4 1.4 1 TIGR01035 hemA: glutamyl-tRNA reductase
------ inclusion threshold ------
0.024 11.5 0.3 0.071 10.0 0.3 1.9 2 TIGR00518 alaDH: alanine dehydrogenase
Domain annotation for each model (and alignments):
>> TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.2 0.2 5.5e-08 6.2e-05 126 211 .. 138 223 .. 121 252 .. 0.80
Alignments for each domain:
== domain 1 score: 20.2 bits; conditional E-value: 5.5e-08
TIGR03911 126 eatGkiyaealdllkaglkekdvlviGlGk.vGtaaavalvkkGakvyvydkekelleklvkdlpevgieaeesealkkfslifeat 211
++t ++ + l+ + ++++kd+ +iG+ + vG++ a++l++ Ga + +k+++ l k +k ++ i+a+ ++al k ++i + +
MMSYN1_0684 138 PCTPIGIINLLKAYNIDVRSKDITIIGTSNiVGKPLAIMLSNMGATISMCNKNTKSLKKYTKRS-DIVISATGKQALIKKDMIKKNA 223
5888888888888999***********98658***********************999998876.8888888888888888876543 PP
>> TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.0 3.9e-06 0.0043 90 130 .. 45 85 .. 40 92 .. 0.93
2 ? -1.7 0.1 0.34 3.8e+02 293 311 .. 223 241 .. 176 255 .. 0.79
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 3.9e-06
TIGR01661 90 anlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdls 130
++lyvs k+ + +es++ +f + its ilsd++++l
MMSYN1_0684 45 SELYVSNKIKACNLVGIESVLLRFDQNITSEILSDQINQLN 85
78***********************************9875 PP
== domain 2 score: -1.7 bits; conditional E-value: 0.34
TIGR01661 293 GavqsvkiirdlttnkckG 311
v +v ii+d+ tnk G
MMSYN1_0684 223 AIVIDVGIIKDPITNKIVG 241
4567888888888888655 PP
>> TIGR01035 hemA: glutamyl-tRNA reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.0 0.4 7.8e-06 0.0088 200 263 .. 154 222 .. 142 237 .. 0.78
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 7.8e-06
TIGR01035 200 kekgvkkvlilnRtyekaekLakeleeeavkle.......kleealaeadivissTgapepivskedlera 263
+ k+++i++ + + La l+++ +++ +l+++ + divis+Tg +++++k+++++
MMSYN1_0684 154 DVRS-KDITIIGTSNIVGKPLAIMLSNMGATISmcnkntkSLKKYTKRSDIVISATGK-QALIKKDMIKKN 222
4444.789999999999999999999876666666999999***************95.667788888764 PP
>> TIGR00518 alaDH: alanine dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.2 0.0 0.33 3.7e+02 273 304 .. 13 46 .. 2 65 .. 0.72
2 ? 10.0 0.3 6.3e-05 0.071 165 248 .. 155 239 .. 143 284 .. 0.83
Alignments for each domain:
== domain 1 score: -2.2 bits; conditional E-value: 0.33
TIGR00518 273 ivetvr..vttydqptyakhevvhyavanmpgav 304
i et++ + ty + y+k + v + + n p++
MMSYN1_0684 13 IKETLKqqIDTYLNKNYKKPKLVVILIGNDPASE 46
5566554577888888888888888888888875 PP
== domain 2 score: 10.0 bits; conditional E-value: 6.3e-05
TIGR00518 165 veagkvtiiGg.GvvGtnaaklavGlGatvtildinvdrlrqldelfgsriktrysnaveiedavkeadlligavlipGakapkl 248
v++ ++tiiG+ +vG a + +Gat+++ + n l++ + i+ +a +d++k+ ++i +i + k+
MMSYN1_0684 155 VRSKDITIIGTsNIVGKPLAIMLSNMGATISMCNKNTKSLKKYTKRSDIVISATGKQALIKKDMIKKNAIVIDVGIIKDPITNKI 239
78899*****72589************************9998877777777777777777888888888887776665555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (288 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 269 (0.0599376); expected 89.8 (0.02)
Passed bias filter: 123 (0.0274064); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1879.91
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0684 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0685 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0685.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0685/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0685 [L=533]
Description: ktrAB 3=Putative Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.1e-55 185.1 44.0 4.5e-54 182.0 39.6 3.3 2 TIGR00933 2a38: potassium uptake protein, TrkH family
1e-06 25.4 30.7 1.4e-06 24.9 21.6 2.5 2 TIGR00934 2a38euk: potassium uptake protein, Trk family
Domain annotation for each model (and alignments):
>> TIGR00933 2a38: potassium uptake protein, TrkH family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.7 0.1 0.011 25 72 116 .. 10 60 .. 7 75 .. 0.71
2 ! 182.0 39.6 2e-57 4.5e-54 12 390 .. 79 503 .. 64 504 .. 0.82
Alignments for each domain:
== domain 1 score: 1.7 bits; conditional E-value: 0.011
TIGR00933 72 gkklslgarlylkealgqlkdekllplikevl......ktivvielllail 116
+ kl++++rl++k + ++++ k ++l+k++ i++i+++ +l
MMSYN1_0685 10 KHKLKFTSRLFKKTSNFNEEKYKFFRLVKDIWplsktsEKIFLIYVAIILL 60
578999*********999*******99998751111114455555555554 PP
== domain 2 score: 182.0 bits; conditional E-value: 2e-57
TIGR00933 12 eklsfidAlFeatSavtvTGltvldtleslpkaglllrsllqqiGGlGfivlavailillgkklslgarlylkealgqlkdekllplikevlktivvi 109
+ +f++ +F a S+++ TGltvld+ +s++ +g+l+++ll+ +GG+G++++ ++++++++kk+s+++ ++++ +g+ + + + lik+ + + ++
MMSYN1_0685 79 YNWDFLTGIFIASSGFSDTGLTVLDVSHSYTFWGQLILLLLIEFGGIGVLTFKIVLFLIINKKISISDTIVAQSERGSATTSLTIDLIKDGFIWLTSV 176
46799********************************************************************************************* PP
TIGR00933 110 elllaillavlfvle..............g..vmslfdAifhsisalsngGfslhsesli.gy.fssvlvelvvafli...ilGGlgFlviyevllls 186
++++a +l++lf ++ ++sl++A+fhs sa++n+Gf++ s +++ y +++ v+ + ++++ i+GGlg+ + ++ +
MMSYN1_0685 177 QVISAFILFFLFFFNqpsnnpnlevvspyHdfWKSLWFAVFHSTSAVNNAGFDIISPNSLqPYnVDNHRVYAIQVIFMlewIIGGLGYPTFHDIKRKL 274
********999975433333333333333233699******************98866551563456677777666664448******9988875433 PP
TIGR00933 187 rkk...kkkalsldtklvlfvtllllligvvlllllevg...............ktlasksleelllsaffvsstlrtaGfstldlaalseaslvlll 266
+ + +k ++sl tk+ + v+l+l++ g ++++++e++ + l ks + + + + f + ++r aGfst+d++++++ s+ +l+
MMSYN1_0685 275 KARktkEKINFSLFTKINFWVYLVLFIFGPLAVFATEYSnynnslifhyydenfTVLNAKSNTVVFMDILFNTTASRNAGFSTIDISTFNSGSKAILS 372
2221234468***************************998875444333332221222333334455677889999********************** PP
TIGR00933 267 llmfiGgasgSTaGGiKvirvaillksvkkeirrlkeprviferkiekktiekailesvvsiflvfllifll......slleliasgldfltllfevv 358
+lmfiG a++STaGGi ++++ +ll s+ + i+ ++ + f+++i+ +t++++ + +++s+fl+f+++f++ ++ l + ++++
MMSYN1_0685 373 ILMFIGSAPSSTAGGIRTTTFGVLLLSTFTIIK-NQKFTSAFRKTIPSETVNRSYAAFFISTFLIFIALFIIyvdsnsVFHTLKNHNSASINTILLIT 469
*********************************.788889****************************999822322123446677888999999*** PP
TIGR00933 359 sAfatvGlsvG..sltaeLsdlgklilivlMflG 390
sAf+tvGls + +L +++k+ li++Mf+G
MMSYN1_0685 470 SAFGTVGLSPLahFQMYQLGVVTKISLILIMFIG 503
*********664666789***************9 PP
>> TIGR00934 2a38euk: potassium uptake protein, Trk family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.1 1.7 0.0006 1.4 51 113 .. 53 121 .. 12 156 .. 0.63
2 ! 24.9 21.6 6.2e-10 1.4e-06 499 791 .. 179 478 .. 175 506 .. 0.72
Alignments for each domain:
== domain 1 score: 5.1 bits; conditional E-value: 0.0006
TIGR00934 51 hYfyiislt.liasi....llypstvkniayiDaLFlaagAvTqggLntvdvn.elslyqqivlyiltl 113
+Y+ ii l l++si l++++++ n ++ +F+a++ +gL dv + + + q++l +l+
MMSYN1_0685 53 IYVAIILLGgLLLSIpnfsLTKSGSKYNWDFLTGIFIASSGFSDTGLTVLDVShSYTFWGQLILLLLIE 121
333333333333333222144444667777777777777777777777777752456666666666543 PP
== domain 2 score: 24.9 bits; conditional E-value: 6.2e-10
TIGR00934 499 ivafvllvvwillkktys...evvrskg..vsptwwglftavsafadlGltlt.pdsmvsfn...kavylL.lllilfiiiGNTgFPilLrliiWilf 586
i af+l++++ + + evv+ + + +w+++f + sa++++G+ ++ p+s+ ++n + vy + ++ +l iiG g+P + i
MMSYN1_0685 179 ISAFILFFLFFFNQPSNNpnlEVVSPYHdfWKSLWFAVFHSTSAVNNAGFDIIsPNSLQPYNvdnHRVYAIqVIFMLEWIIGGLGYPTFHD----IKR 272
5567776666655443322226776433226889****************76549**999963225678773344666799******9986....578 PP
TIGR00934 587 kispdlsklkeslgfLldhprrcFtlLfpkaatwwLlltlvglniidlilFiildlgsevvkslskgikvlnglFqsvstRtaGfsvvdlsqLhPaiq 684
k+ ++ k k + + + + +Lf ++ + + n + ++F d + +v+++ s+ + + lF++ ++R aGfs +d+s++ +
MMSYN1_0685 273 KLKARKTKEKINFSLFTKINFWVYLVLFIFGPLAVFATE--YSNYNNSLIFHYYDENFTVLNAKSNTVVFMDILFNTTASRNAGFSTIDISTFNSGSK 368
888777777777777888888999999999987765554..45788999********************************************99998 PP
TIGR00934 685 Vsymlmmyvsvlp..lAisirrTnvyeEqslGly......deeeeeeegs.......eestksfigaHLrrqLsFdLwflflglfiicIcEgdkikdv 767
++m++ + p A ir T + G+ ++++ + e+ ++s+ + +f+ lfii + + + +
MMSYN1_0685 369 AILSILMFIGSAPssTAGGIRTTT-F-----GVLllstftIIKNQKFTSAfrktipsETVNRSYAAFFIS------TFLIFIALFIIYVDSNSVFHTL 454
888889999999866777788774.3.....333333334234444433234444445555565554433......344899**************** PP
TIGR00934 768 qkpnfnvfailfEvvSAYGtvGls 791
++ n ++ ++ + SA+GtvGls
MMSYN1_0685 455 KNHNSASINTILLITSAFGTVGLS 478
*****99****************9 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (533 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 294 (0.065508); expected 89.8 (0.02)
Passed bias filter: 97 (0.0216132); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.20
# Mc/sec: 3827.05
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0685 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0686 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0686.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0686/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0686 [L=242]
Description: trkA 3=Putative Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.00015 18.5 0.2 0.00019 18.1 0.2 1.2 1 TIGR03802 Asp_Ala_antiprt: aspartate-alanine antiporter
Domain annotation for each model (and alignments):
>> TIGR03802 Asp_Ala_antiprt: aspartate-alanine antiporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.1 0.2 4.3e-08 0.00019 216 299 .. 154 236 .. 132 242 .] 0.84
Alignments for each domain:
== domain 1 score: 18.1 bits; conditional E-value: 4.3e-08
TIGR03802 216 elvgRvyrvneeskligktvselekklakrvtverirregkllevspelvleagDvvlvvgrrdavvelaaeigeevkevelle 299
e+++ +++v++ + l k ++++ +++k ++ +irr+gk+l +++ + l++gD ++v+ r + +la++i+ ++e+ + +
MMSYN1_0686 154 EFISSTLEVKNPD-LFNKNIQQVGLSTNKDFNIIQIRRKGKILLPDDYTELKEGDHIVVFARTTIINSLAEKIQGMIDEETDPN 236
5677778888886.899****************************************999998877777888877777666555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (242 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 227 (0.0505793); expected 89.8 (0.02)
Passed bias filter: 110 (0.0245098); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1579.65
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0686 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0687 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0687.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0687/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0687 [L=479]
Description: gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-148 492.8 24.1 2.4e-148 492.6 24.1 1.0 1 TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe
5.5e-34 115.3 12.7 7.2e-17 58.8 8.1 2.6 3 TIGR00134 gatE_arch: glutamyl-tRNA(Gln) amidotransferase, su
Domain annotation for each model (and alignments):
>> TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 492.6 24.1 1.1e-151 2.4e-148 1 479 [. 1 474 [. 1 476 [. 0.97
Alignments for each domain:
== domain 1 score: 492.6 bits; conditional E-value: 1.1e-151
TIGR00133 1 kieyelviGlEvHvqlntksKlFckcsneaqeakpNtnvcpvclglPGalPvlNkeavkkAlklalalnskivsevsvFdRKhYfYpDlPkgyqitqq 98
++++e++iG+E Hv l t+sK+F+ ++ ++ + +pNt + ++l++PG+lP++Nk+ v+ A++ +aln++i ++FdRK+YfYpDl kg+qitqq
MMSYN1_0687 1 MQNFEIIIGVENHVELKTNSKMFSPSKVSYGQ-TPNTLANEIDLAYPGTLPSVNKKGVELAILACNALNMQI-DTLLTFDRKNYFYPDLTKGFQITQQ 96
679****************************9.**************************************5.56*********************** PP
TIGR00133 99 dlPiaedGkleieleeke.keigierlhlEeDtgksqykesdkdkqslvDfNRsgvPLlEiVtkPdlksakearaflkklrqilryleisdgdleeGs 195
Pi+++G+lei le+++ k i+ierlh+EeDt+k+++k d+ +++D+NRsgv L+EiVtkP+l+sa+ea +++klr+il +l++sd +++eGs
MMSYN1_0687 97 FNPIGTNGSLEITLENGNkKVIEIERLHIEEDTAKQVHK----DNLTYLDYNRSGVGLIEIVTKPVLRSAEEACLYVEKLREILLFLNVSDVKMNEGS 190
*************9987737799************9999....579**************************************************** PP
TIGR00133 196 mRvDvNvsirlkGqekegtrvEiKNlnslksiekaieyEieRqkkllkkgeevkqetrafdekksitvslRkKeeseDYRYfpePdlppieideevvk 293
+R+D N+s+r+ G++k++++vEiKNlns+++i+ka+e+Ei+Rqk++l k + v+q+tr fd+++s+t+ +R+K +s+DYRYf+eP++ pi++d+++v+
MMSYN1_0687 191 LRTDLNISLRPYGSDKFSNKVEIKNLNSISNIKKAVEFEINRQKEILLKNQIVEQQTRRFDDQTSSTILMRSKIDSIDYRYFREPNIFPIQLDQKWVD 288
************************************************************************************************** PP
TIGR00133 294 ekveeklpelPeakrirlkkeyglseedakvlvsdlelldafeevvklikepklavnWileellgeLnkkkislaeallkpeelaeliklikegkisq 391
+ + + pel ++krir+++e+gl +eda+++ + le+ + fe+ k++++ +++++ +++e++++Ln ++ ++ + l+pe+la++i+li+++ is+
MMSYN1_0687 289 Q-IISNSPELADQKRIRYVNELGLTSEDANIILTSLEMTNFFEKTIKSTTNYNKVAKMLISEIQAKLNLENKTIDQIKLSPENLASVINLIDKNIISS 385
*.88999******************************************************************************************* PP
TIGR00133 392 ksakelleellen.kkdpkklieklgliqisdekelvkiveevikenpkevekyksgkekalkflvGqvmkktkgradpkevekllkel 479
k++k ++ +l+ + +++++e+l+l i++++e+ k++ ++i++n++ + +y + e+++k ++Gq mk+t+g +dp+ +++++ +
MMSYN1_0687 386 KQTKVIMPIILDSnTETVEQIVERLNLKLITNKDEISKLLVNIINQNKELLNQYSTRPERVIKTIMGQLMKQTNGNVDPEIANEIVIKE 474
***********9747889*****************************************************************998665 PP
>> TIGR00134 gatE_arch: glutamyl-tRNA(Gln) amidotransferase, subunit E
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.7 0.0 0.033 75 10 30 .. 7 27 .. 2 43 .. 0.86
2 ! 58.3 0.3 4.4e-20 9.9e-17 91 269 .. 51 244 .. 35 264 .. 0.82
3 ! 58.8 8.1 3.2e-20 7.2e-17 420 621 .. 269 478 .. 241 479 .] 0.79
Alignments for each domain:
== domain 1 score: -0.7 bits; conditional E-value: 0.033
TIGR00134 10 kvGleihqqldtkrklfclcp 30
+G+e h +l+t++k+f + +
MMSYN1_0687 7 IIGVENHVELKTNSKMFSPSK 27
68***************9876 PP
== domain 2 score: 58.3 bits; conditional E-value: 4.4e-20
TIGR00134 91 elneealeiavevalllnmevvdevhtmrkividGsntsGfqrtal...vatdGylet.....degkvgieslcleedaarkiedrgdavvysldrlG 180
+n++ +e+a+ lnm++ + rk t Gfq t + t+G le+ +++ ++ie l +eed+a+++++ ++ + +r G
MMSYN1_0687 51 SVNKKGVELAILACNALNMQIDTLLTFDRKNYFYPDLTKGFQITQQfnpIGTNGSLEItlengNKKVIEIERLHIEEDTAKQVHK-DNLTYLDYNRSG 147
4799999*************98888888**************997534478999998733322345579*************975.455666889*** PP
TIGR00134 181 iplveistepdikspkmakevaariGeilr..stgkvkrGlGtirqdvnisir....d..GarvevkGvqdldliekiverevlrqlnllkirdelk 269
+ l+ei t+p + s + a +++ eil vk G++r d+nis+r d +ve+k ++ + i+k ve e+ rq ++l + ++
MMSYN1_0687 148 VGLIEIVTKPVLRSAEEACLYVEKLREILLflNVSDVKMNEGSLRTDLNISLRpygsDkfSNKVEIKNLNSISNIKKAVEFEINRQKEILLKNQIVE 244
***************************985336779****************84333233579***********************99875444444 PP
== domain 3 score: 58.8 bits; conditional E-value: 3.2e-20
TIGR00134 420 armypetdippvvikeelleeiranlpelpeekaerlkkeyklsedlakklvksnyvdvfeelskklkvdptviasvlel.tlkelrreGvdid..kl 514
r + e +i p+ ++++ +++i n pel ++k r+ +e +l+ + a+ + +s + f e + k + +a++l ++l+ e id kl
MMSYN1_0687 269 YRYFREPNIFPIQLDQKWVDQIISNSPELADQKRIRYVNELGLTSEDANIILTSLEMTNFFEKTIKSTTNYNKVAKMLISeIQAKLNLENKTIDqiKL 366
58999***************************************999999888876665555555666677777777755156789999999993346 PP
TIGR00134 515 eerelrevlklleeGkiakegleevlkllaeepdka.edearklklk.llakeeiekiieeiieekldli...kerGegafgplmGrvmkklrGkadG 607
++l v++l+++ i+ + + ++ ++ + ++ e+ +++l+lk + k+ei k++ +ii+++ +l+ + r e+ ++ +mG+ mk+ G++d
MMSYN1_0687 367 SPENLASVINLIDKNIISSKQTKVIMPIILDSNTETvEQIVERLNLKlITNKDEISKLLVNIINQNKELLnqySTRPERVIKTIMGQLMKQTNGNVDP 464
6789**************99999999998887665515667889966156799**********999887722256999******************** PP
TIGR00134 608 kvvneilrkklkea 621
+ nei+ k++++
MMSYN1_0687 465 EIANEIVIKEIEKN 478
*******9998765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (479 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 350 (0.0779857); expected 89.8 (0.02)
Passed bias filter: 71 (0.01582); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.23
# Mc/sec: 2990.72
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0687 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0688 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0688.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0688/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0688 [L=485]
Description: gatA 4=Probable Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.5e-134 445.1 0.6 7.5e-134 444.9 0.6 1.0 1 TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe
1.1e-56 190.6 0.0 5.4e-44 148.8 0.0 2.0 2 TIGR02715 amido_AtzE: amidohydrolase, AtzE family
2.9e-49 166.0 0.0 5.8e-45 151.8 0.0 2.0 2 TIGR02713 allophanate_hyd: allophanate hydrolase
Domain annotation for each model (and alignments):
>> TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 444.9 0.6 5e-137 7.5e-134 3 462 .. 14 474 .. 12 478 .. 0.95
Alignments for each domain:
== domain 1 score: 444.9 bits; conditional E-value: 5e-137
TIGR00132 3 ellkkkevsikevleeilerieavkdkinaflevtkekalkkakkldkkvakekklagipiavKdniavkdiettcaSkiLenyvspydatVverlke 100
+ l++k+ ++ ++++e+l++++ d +na+ +++ +alk+akk++++ +++++l gip+ Kdn+++kdi+tt++SkiLeny++ y+a v l++
MMSYN1_0688 14 KDLVDKKYTVLDLTKEVLKNLKYELD-SNAINYLAEIHALKQAKKIEENFDSNNLLSGIPYICKDNFSTKDIPTTASSKILENYIPNYSAALVDSLEK 110
56789999999*********998888.89999999999************9889******************************************** PP
TIGR00132 101 agaliiGktNlDEFamGsstetSafgvtknPeneervpGGSsgGsaaavaadlvplalgsDTGgSiRqPAsfcgvvGlKPtYGlvSRyGlvayasSld 198
++ +++Gk+ lDE +mG+++ S+ g ++nP++++r++GGSs+Gsa+ va++lvp+a g+DTG+SiR+PAs+ g+vG+KPtYG++SRyGl++ya+Sld
MMSYN1_0688 111 NQSILVGKSALDELGMGGTGLLSCNGKITNPWDKNRIVGGSSSGSAYLVAKGLVPFATGTDTGDSIRKPASYNGIVGFKPTYGVISRYGLLPYAPSLD 208
************************************************************************************************** PP
TIGR00132 199 qiGilakkvedialvldvisgkDkkDstslevkveelleelkkdlkglkvgvvkelseesldkevkekfekllekleelgaeivevslp..svklala 294
+ G+++k+v+d+a++ d+ D++D++s ++ ++l+++ ++ +g++ ++e+ ld+e k+++ +l e+l+++g++++ +++ ++ +l+
MMSYN1_0688 209 TAGFFTKNVDDMAVLCDASYDDDNRDFSSTTADHVDFLKQIDDFSNIKTFGYISSVIES-LDQEHKTHYYNLFETLKNKGYQVKALDFRqdLLDAVLP 305
*******************************************999999*********9.***************************987689***** PP
TIGR00132 295 iYyiispsEassnlarydgiryGkrveelkslkelyaktRsegfgeevkrRimlGayalskeyydkyykkAqkvrtliidefeklfeevDvivsptap 392
+Y +i+ sE +s+ + +dgi+yGkrv+ + ++e++ ++R +gfge v+rR+ +G+ +l+ e+ +ky +A+kvrtli ++f++lfe+vDv++ p +p
MMSYN1_0688 306 VYLMIANSESVSTNSCLDGIKYGKRVDGND-YSEIMINSRTQGFGEIVRRRFAIGSLVLKGENQKKYLVQAKKVRTLINRDFNNLFEQVDVLLLPPSP 402
**************************9887.******************************************************************* PP
TIGR00132 393 tlafklgekaedplemylsDvlt...vpanlaGlpaisvPlgkkekglpiGlqiigkafddkkllsvakaleq 462
+a ++e ++ ++ +D++ v an++G+p+i++P+ k+ k++p+G++i++k++ d l++ak le+
MMSYN1_0688 403 SIAPLIEEINNPNKKSQEKDFIEnilVLANFTGSPSITIPFFKT-KNMPVGINITTKVKTDLLTLQAAKLLEN 474
***9999988854455555554322255*************999.8*****************9999999886 PP
>> TIGR02715 amido_AtzE: amidohydrolase, AtzE family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 148.8 0.0 3.6e-47 5.4e-44 2 241 .. 9 243 .. 8 260 .. 0.93
2 ! 39.8 0.0 4.4e-14 6.6e-11 316 446 .. 341 474 .. 330 479 .. 0.81
Alignments for each domain:
== domain 1 score: 148.8 bits; conditional E-value: 3.6e-47
TIGR02715 2 iveiakavrsgkvsaravaeaalarikaadellnaftavtaeralaeaaridaelaaGkelgalagvPfavknlfdvaGlttlaGakinaelaPakrd 99
i ei k++ ++k + +++++ l+++k + na+ + +al +a++i+ + + l+g+P++ k+ f + +t+a +ki + P
MMSYN1_0688 9 IFEIHKDLVDKKYTVLDLTKEVLKNLKYE-LDSNAINYLAEIHALKQAKKIEENFD---SNNLLSGIPYICKDNFSTKDIPTTASSKILENYIPNY-S 101
679999******************99865.556999999999**********9885...5679**************************9999975.6 PP
TIGR02715 100 atlvqrlkaaGavlvGalnmdeyaygfttenahyGatrnPhdltriaGGssGGsaaavaaglvplslGsdtnGsirvPaslCGvfGlkPtyGrlsrrg 197
a+lv+ l+++ ++lvG +de g t+ + +G nP d++ri GGss Gsa va glvp++ G+dt sir Pas+ G+ G+kPtyG +sr g
MMSYN1_0688 102 AALVDSLEKNQSILVGKSALDELGMGGTGLLSCNGKITNPWDKNRIVGGSSSGSAYLVAKGLVPFATGTDTGDSIRKPASYNGIVGFKPTYGVISRYG 199
899*********************************************************************************************** PP
TIGR02715 198 vfpfvesldhvGPlarsvedlalvydvlqGedakddaiaareve 241
p++ sld G +++ v+d+a++ d+ d++d ++ +
MMSYN1_0688 200 LLPYAPSLDTAGFFTKNVDDMAVLCDASYDDDNRDFSSTTADHV 243
******************************99999887776654 PP
== domain 2 score: 39.8 bits; conditional E-value: 4.4e-14
TIGR02715 316 lrkrpqdfdPasrdrllaGall.....PaalvaqaqrfrrvfrdkvrelfervdvllaPatpisapkigqet.leldgvelsvranlGiftqPisfig 407
++ r+q f ++r r+ G l+ ++ +qa++ r++ +++++lfe+vdvll P +p ap i++ + + e +n+ ++ f g
MMSYN1_0688 341 INSRTQGFGEIVRRRFAIGSLVlkgenQKKYLVQAKKVRTLINRDFNNLFEQVDVLLLPPSPSIAPLIEEINnPNKKSQEKDFIENILVL---ANFTG 435
6789999999******99988722222345789***********************************8643034444555555555555...57*** PP
TIGR02715 408 lPvlavPvkrpeklPiGvqliaaPwredlllrvaavler 446
P +++P +++++P+G+ + + + l l++a+ le+
MMSYN1_0688 436 SPSITIPFFKTKNMPVGINITTKVKTDLLTLQAAKLLEN 474
********************9999999999*****9996 PP
>> TIGR02713 allophanate_hyd: allophanate hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 151.8 0.0 3.9e-48 5.8e-45 8 260 .. 46 297 .. 40 308 .. 0.87
2 ! 12.1 0.1 7.9e-06 0.012 313 410 .. 374 473 .. 358 483 .. 0.83
Alignments for each domain:
== domain 1 score: 151.8 bits; conditional E-value: 3.9e-48
TIGR02713 8 lseeeleeelaaleerkadpeelPLyGvpfavkdniDvaglpttaacPaf.aylpeedatvvaklraaGaivvGktnlDqFAtGLvGtRsPygavrna 104
l e ++ ++++++ee d ++ L G+p+ kdn+ +++ptta++ y+p+ +a+ v+ l+++ +i+vGk lD G G s g+++n
MMSYN1_0688 46 LAEIHALKQAKKIEENF-D-SNNLLSGIPYICKDNFSTKDIPTTASSKILeNYIPNYSAALVDSLEKNQSILVGKSALDELGMGGTGLLSCNGKITNP 141
55556666777766653.3.45679*********************987747********************************************** PP
TIGR02713 105 fdeeyisGGsssGsavavarGlvsfaLGtDtAGsGRvPAalnnlvGlkptkGlvsttGvvPAcrslDcvsvfaltvedAekvlrilaafdaeDaysrk 202
d+++i GGsssGsa va+Glv+fa GtDt s R PA++n++vG kpt G++s G+ P + slD+ f+++v+d + ++++ d++D s +
MMSYN1_0688 142 WDKNRIVGGSSSGSAYLVAKGLVPFATGTDTGDSIRKPASYNGIVGFKPTYGVISRYGLLPYAPSLDTAGFFTKNVDDMAVLCDASYDDDNRDFSSTT 239
******************************************************************************99999999999999888877 PP
TIGR02713 203 aelpa..aaalklpeklrvgvPraeeleffgdsqaealfeaaverlealgvevveidlap 260
a+ ++ ++ +++ ++g + + e ++++ +++ + + e+l+++g +v+++d+ +
MMSYN1_0688 240 ADHVDflKQIDDFSNIKTFGYIS-SVIESLDQE-HKTHYYNLFETLKNKGYQVKALDFRQ 297
55554113445678888999876.778888877.677788899**************964 PP
== domain 2 score: 12.1 bits; conditional E-value: 7.9e-06
TIGR02713 313 eaeyrlaelkrkaeallasvdvllvPtapliptieevaadPvtlnaelGtytnfvnLldlaa...vAvPagfrsdglPfgvtliapafkdaalaelak 407
+a++ ++ ++r ++l+++vdvll+P +p i + e ++P + e + n + L+++++ + +P f++ +P+g+ + ++ +d ++ ak
MMSYN1_0688 374 QAKKVRTLINRDFNNLFEQVDVLLLPPSPSIAPLIEEINNPNKKSQEKDFIENILVLANFTGspsITIPF-FKTKNMPVGINITTKVKTDLLTLQAAK 470
5566677789999****************99988888899*************99999987433399996.66668*******999999988887777 PP
TIGR02713 408 rlq 410
l+
MMSYN1_0688 471 LLE 473
655 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (485 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 197 (0.0438948); expected 89.8 (0.02)
Passed bias filter: 131 (0.0291889); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.21
# Mc/sec: 3316.58
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0688 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0689 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0689.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0689/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0689 [L=98]
Description: gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.5e-14 50.2 0.8 6.3e-14 50.1 0.8 1.0 1 TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe
2.9e-06 25.3 0.1 4.9e-06 24.5 0.1 1.4 1 TIGR01827 gatC_rel: putative Asp-tRNA(Asn)/Glu-tRNA(Gln) ami
0.002 14.8 0.2 0.002 14.8 0.2 1.0 1 TIGR02289 M3_not_pepF: oligoendopeptidase, M3 family
Domain annotation for each model (and alignments):
>> TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 50.1 0.8 4.2e-17 6.3e-14 7 91 .. 11 96 .. 6 98 .] 0.91
Alignments for each domain:
== domain 1 score: 50.1 bits; conditional E-value: 4.2e-17
TIGR00135 7 krlakLarlelseeeaekfaeeLkeilklveqlsevdtenvepmanplels.nklReDeveeslkrkeilknapekedgfikvPki 91
k+la+ + el++ee e++++ +++++ + +++ +dt++vep++ +++ lR+De+ ++ +keil+nap k+d++i ++
MMSYN1_0689 11 KELAHDFMFELNDEELENLMSVEDKLFDDFKKITSIDTTDVEPTFYTVNQIhSYLRDDEPIQTNCQKEILENAPTKHDDYITIARV 96
677888899***********************************8877776599***************************87666 PP
>> TIGR01827 gatC_rel: putative Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.5 0.1 3.3e-09 4.9e-06 19 68 .. 47 95 .. 30 97 .. 0.76
Alignments for each domain:
== domain 1 score: 24.5 bits; conditional E-value: 3.3e-09
TIGR01827 19 evdeleEtyyivdtsn.klREDeeeksdpefkeklLknAPvdddGyvvvEr 68
+ ++e t+y+v++ + lR+De +++ ++ +L+nAP + d y+ + r
MMSYN1_0689 47 DTTDVEPTFYTVNQIHsYLRDDEPIQTNC--QKEILENAPTKHDDYITIAR 95
3448899*999998651689999999999..99***********9*98765 PP
>> TIGR02289 M3_not_pepF: oligoendopeptidase, M3 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.8 0.2 1.3e-06 0.002 92 157 .. 6 69 .. 1 94 [. 0.78
Alignments for each domain:
== domain 1 score: 14.8 bits; conditional E-value: 1.3e-06
TIGR02289 92 eervyellfklikvklklfsekniellikenklstkYekiianikidfeGeektlsqlkpyLqdsd 157
++++ + l + +l++e+ +l+ e+kl +++ki++ + d e +t++q+++yL+d +
MMSYN1_0689 6 NKEFWKELAH--DFMFELNDEELENLMSVEDKLFDDFKKITSIDTTDVEPTFYTVNQIHSYLRDDE 69
4444444433..345689999999***************************************976 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (98 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 159 (0.0354278); expected 89.8 (0.02)
Passed bias filter: 97 (0.0216132); expected 89.8 (0.02)
Passed Vit filter: 15 (0.00334225); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 703.66
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0689 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0690 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0690.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0690/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0690 [L=668]
Description: dnlj: DNA ligase, NAD-dependent 5=Equivalog DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.5e-226 751.0 7.5 2.9e-226 750.8 7.5 1.0 1 TIGR00575 dnlj: DNA ligase, NAD-dependent
------ inclusion threshold ------
0.013 13.5 0.0 0.043 11.8 0.0 1.9 1 TIGR01259 comE: comEA protein
Domain annotation for each model (and alignments):
>> TIGR00575 dnlj: DNA ligase, NAD-dependent
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 750.8 7.5 1.3e-229 2.9e-226 1 652 [] 13 659 .. 13 659 .. 0.97
Alignments for each domain:
== domain 1 score: 750.8 bits; conditional E-value: 1.3e-229
TIGR00575 1 lrklirkhdyrYyvldepsisDaeyDallrelkeleekhPelktpdSptqrvGaavlkrfkkveHevpmlSldnafdeeelkafakriekqlge.kve 97
l+++++ ++++Yyv+d+ps++D eyD l+el le+ +Pel+t+dSp+q+vG+ v ++f k++H++pmlSl n+f+ +e+ +f+ +i+k ++ +++
MMSYN1_0690 13 LKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITSDSPSQKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQISKVSNTlDNQ 110
6899**************************************************************************************99988*** PP
TIGR00575 98 lvvelKiDGvsvsLtYengvlvkaltRGdGivGedvtaNvrtiksiPlklkenlpetlevRGEvflskeefeklneereeegeklfaNpRNaaaGslr 195
+v+elKiDG+s+sL+Yeng lv+a+tRG+G+vGedvt Nv+tiksiPlk+ n +e++evRGE++lsk+efek+n++r ++e lf NpRNaaaG+lr
MMSYN1_0690 111 YVAELKIDGLSISLVYENGSLVSAATRGNGVVGEDVTINVKTIKSIPLKI--NKKERVEVRGEIYLSKAEFEKINQKRLLNNEDLFINPRNAAAGTLR 206
**************************************************..68******************************************** PP
TIGR00575 196 qldpkitakrklkllayglgaegkelklatqtealallkklgfkvseelklaksleevlelieeiekkReelpyeiDGvVvkvddlalqeeLGatska 293
qld+ki+a r+l+++ y+ ++ + tq++++ l++lgfk ++e+ l+k+l+e+ ++i+++++ +++l+y+iDG+V k++d +lq+ LG+tsk
MMSYN1_0690 207 QLDSKIVASRNLDAFLYYY-ISDDSNN-LTQYQSILKLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDKNLQNSLGFTSKI 302
****************999.3555555.79******************************************************************** PP
TIGR00575 294 prwaiAyKfpaeeaitklrdvevqvgrtgaitpvaklepVelaGttvsratLhNedeiekkdirigdtVvvskaGdvIPkvvevvkekRtaeekeiki 391
p+waiAyKfpae ++tkl+d+ +vgrtg+it+ aklepV+l G+t+s+atL N+++i++kd+ri++ V ++kaGdvIP+v+e +k++ + + ++
MMSYN1_0690 303 PKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISAATLNNAEYIKSKDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEVFQP 400
***************************************************************************************99999999999 PP
TIGR00575 392 pteCpsCgselvkleeevalrCtnlnCpaqsverikhfvsrkaldieglgekviekLfeeklvrsvadLykLk..ledllelervgeksaknlleaie 487
+Cp C+s l+k e+ev+++C+n++C+ + ++++hf sr+a++i lg++ e Lf+ k++++++d+y+L+ ++++l +e++g ks nl+++i+
MMSYN1_0690 401 ILYCPNCHSLLEKNENEVDQFCINSSCSMKILRSLQHFSSREAMNIVSLGDRSLEILFNLKIIQNISDIYRLEeyKDEILAIENFGLKSYLNLIDSIN 498
99***********************************************************************88889******************** PP
TIGR00575 488 kskekplerlllalgirhvGettakkLakafktleklkkasleellkvegvgekvaesvveffskeeneellkkleelgvelesaskekveaeeksll 585
sk+++le++l++lgirh+G++tak La++++++++l kas +el +++ +ge +a s++ +f+ e+n++l+++l++++++++ ++ ++ s++
MMSYN1_0690 499 MSKNNSLEKVLFGLGIRHIGSKTAKILARKYQNIDNLMKASYDELIQINSIGESLALSIIDWFKIEDNLKLIDELKSFNINFNY-L--GAKINSDSII 593
***********************************************************************************4.3..4455566678 PP
TIGR00575 586 agktfvltGtleklsrkeakeklealggkvassVskktdyvvagekagsKlkkAkelgikilseeel 652
a+k+fv+tGtl++ r+e k ++e+ gkv +s+sk+tdy++ag++ gsKl+kAk+lg+ki++e+++
MMSYN1_0690 594 ANKSFVITGTLTRP-REEFKTLIENNAGKVIGSISKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQF 659
9***********88.*************************************************986 PP
>> TIGR01259 comE: comEA protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.8 0.0 1.9e-05 0.043 60 102 .. 533 575 .. 515 579 .. 0.90
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 1.9e-05
TIGR01259 60 vnlnkAsleeLqalkGiGpakAkaiieyReenGaFksvddltk 102
nl kAs +eL +++ iG + A ii++ + + + k +d+l+
MMSYN1_0690 533 DNLMKASYDELIQINSIGESLALSIIDWFKIEDNLKLIDELKS 575
5899************************************985 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (668 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 284 (0.0632799); expected 89.8 (0.02)
Passed bias filter: 126 (0.0280749); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.22u 0.22s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 3197.59
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0690 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0691 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0691.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0691/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0691 [L=673]
Description: membrane protein, putative 2=Generic Efflux
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (673 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 367 (0.0817736); expected 89.8 (0.02)
Passed bias filter: 71 (0.01582); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 4832.28
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0691 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0692 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0692.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0692/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0692 [L=302]
Description: pseudouridine synthase, RluA family 2=Generic rRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-44 150.2 2.5 2.1e-44 150.0 2.5 1.0 1 TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
1.4e-20 71.4 3.3 1.4e-20 71.4 3.3 1.7 2 TIGR01621 RluA-like: pseudouridine synthase Rlu family prote
0.00067 17.4 0.2 0.0019 15.9 0.0 1.8 2 TIGR00093 TIGR00093: pseudouridine synthase
Domain annotation for each model (and alignments):
>> TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 150.0 2.5 1.4e-47 2.1e-44 3 276 .. 10 282 .. 8 296 .. 0.86
Alignments for each domain:
== domain 1 score: 150.0 bits; conditional E-value: 1.4e-47
TIGR00005 3 qegqrldevlaselkdlsrskikklieegqVkvnkkkvtanlklkikdgdlvtveveee..eeaevpvedkp.ldilfeDedilvidKPsglvvhptg 97
++q+l+++l++++k + s i+k+i++ +k+n +k + ++++ +k +d+++v+ +++ + ++ +++ ldi++eD++il+++KP+ l +h t
MMSYN1_0692 10 DQNQTLFKFLKKTFKTTPISVIYKWIRNKSIKIN-SKRISDKNYLLKINDVIEVYDSNKpiIRDQFNYISNVnLDIVYEDNNILIVNKPNNLEMHSTY 106
689*******************************.68888889999999999976655547777777666666************************9 PP
TIGR00005 98 gyekntvlnalla.hlkeel....vsrleivhRLDrdTSGllvvaktekaleeLkeqlkek.tvkkeYvalvkgefk.skegtvdaplarven.kkgl 187
+ +++ l + ++++ +++ +vhRLD+ TSGl++ ak++ + + L +++k+k +++k+Y al + ++ + ++v+ + ++n kk+
MMSYN1_0692 107 NLCLDDMVKSYLVdKKEYDIylenSFVISHVHRLDKLTSGLVIYAKNKISSTILTNAFKSKdQINKYYYALTSSDWSlDEFLQVNGYINYDSNiKKAD 204
998777776655505555559888899********************************98579*************666678998887665427788 PP
TIGR00005 188 vavakss.gkeavTvfkvlerdekaslvelkllTGRtHQiRVHlqylghplagDplYgnksvkgksleaeaklkrqaLhaselgfthpat 276
+ k++ k +T fk +++ l+ +kl+TG HQiR l++ +hp+++D Y k+ ++lk ++L a +++f+++++
MMSYN1_0692 205 FSLDKKNnYKYCQTEFKLINK----NLILVKLITGKKHQIRSVLSFYNHPILNDFRYNGKKI--------NDLKMIYLSAFKIEFKNLEK 282
888888889999999999875....69*******************************9888........68889999999999988765 PP
>> TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.2 0.0 0.32 4.8e+02 122 155 .. 2 35 .. 1 53 [. 0.73
2 ! 71.4 3.3 9.3e-24 1.4e-20 2 194 .. 82 288 .. 81 301 .. 0.71
Alignments for each domain:
== domain 1 score: -2.2 bits; conditional E-value: 0.32
TIGR01621 122 trfesvsiaeklrlfilkphtGkthqlrvalksl 155
t+f ++++ lf +t kt + v k +
MMSYN1_0692 2 TKFVVNKNDQNQTLFKFLKKTFKTTPISVIYKWI 35
6666667777777887777788887777776654 PP
== domain 2 score: 71.4 bits; conditional E-value: 9.3e-24
TIGR01621 2 leilfrhsdfvlinksegisvhkddgetglleevakqlgvek...vyl........vhrldkvtsGilllalnaesaselsrlf.aekkikktylals 87
l+i+++ ++ +++nk++++ +h + l ++v l ++k +yl vhrldk+tsG++++a+n+ s++ l++ f ++ +i+k+y al+
MMSYN1_0692 82 LDIVYEDNNILIVNKPNNLEMHSTYN-LCLDDMVKSYLVDKKeydIYLensfvishVHRLDKLTSGLVIYAKNKISSTILTNAFkSKDQINKYYYALT 178
89********************8543.223333332222222111332223334449***************************45668********9 PP
TIGR01621 88 dkkpk.....kkqGliiGdmeksregawklvr.skenpaitrfesvsiaeklrlfilkphtGkthqlrvalkslGsailGdslygk..aeesdrtylh 177
+ + + +G+i d + +++ + l + ++ t+f+ + ++ l ++k tGk hq+r l +il d y++ ++ + yl
MMSYN1_0692 179 SSDWSldeflQVNGYINYDSN-IKKADFSLDKkNNYKYCQTEFKLI----NKNLILVKLITGKKHQIRSVLSFYNHPILNDFRYNGkkINDLKMIYLS 271
988762222244677776643.334445553303333455666655....567999****************************98456777889*** PP
TIGR01621 178 afklefdyqnevievva 194
afk+ef+ +++ ++++
MMSYN1_0692 272 AFKIEFKNLEKPLDYLN 288
******99888776654 PP
>> TIGR00093 TIGR00093: pseudouridine synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.2 0.0 0.96 1.4e+03 62 77 .. 46 61 .. 41 67 .. 0.73
2 ! 15.9 0.0 1.3e-06 0.0019 30 145 .. 133 261 .. 107 277 .. 0.71
Alignments for each domain:
== domain 1 score: -3.2 bits; conditional E-value: 0.96
TIGR00093 62 kevektYlvqvegsvt 77
+ +k+Yl ++++ ++
MMSYN1_0692 46 RISDKNYLLKINDVIE 61
4468999999999887 PP
== domain 2 score: 15.9 bits; conditional E-value: 1.3e-06
TIGR00093 30 klaavGRLDrdseGlllltddgelqhrlthp...ekevektYlvqvegsvtdedlealrkGvkledektkpaklklikepel...........ktklr 113
+ v RLD+ ++Gl++ ++++ + lt++ + +++k Y++ + + ++ +++ ++ + + k+a l k+++ k +
MMSYN1_0692 133 VISHVHRLDKLTSGLVIYAKNKISSTILTNAfksKDQINKYYYALTSSDWSLDEFLQVNGYINYDS-NIKKADFSLDKKNNYkycqtefklinKNLIL 229
345688***************988888876522256688888887777777666666665555544.4444555555555556688888999555889 PP
TIGR00093 114 vtlteGrnrqvrRltaavglevlrLvRvrigd 145
v+l G+ +q+r ++ + + ++l+ R++ ++
MMSYN1_0692 230 VKLITGKKHQIRSVLSFYNHPILNDFRYNGKK 261
9******************9999888776544 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (302 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 201 (0.0447861); expected 89.8 (0.02)
Passed bias filter: 65 (0.0144831); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 2168.42
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0692 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0693 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0693.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0693/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0693 [L=322]
Description: CAAX protease 2=Generic Proteolysis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (322 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 408 (0.0909091); expected 89.8 (0.02)
Passed bias filter: 113 (0.0251783); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 2312.03
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0693 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0694 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0694.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0694/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0694 [L=89]
Description: ptsH 4=Probable Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.3e-31 105.1 4.2 3.7e-31 104.9 4.2 1.0 1 TIGR01003 PTS_HPr_family: phosphocarrier, HPr family
Domain annotation for each model (and alignments):
>> TIGR01003 PTS_HPr_family: phosphocarrier, HPr family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 104.9 4.2 8.2e-35 3.7e-31 1 81 [. 1 81 [. 1 82 [. 0.98
Alignments for each domain:
== domain 1 score: 104.9 bits; conditional E-value: 8.2e-35
TIGR01003 1 mlskevtiknkvGLHaRpAailvkaaskfkseitltkegkevnakSilgimsLaaeqgtevtvkaegedeeealealakll 81
m++++++i++kvGLHaRpA++l+k+askf+s it+ + +k+ n+kSi+++m++a+++gtevt++a+g dee+a++a+++++
MMSYN1_0694 1 MAKFSAIITDKVGLHARPASVLAKEASKFSSHITIMAGEKQGNLKSIMNVMAMAIKTGTEVTIQADGTDEEQAIKAIKQTM 81
899**************************************************************************9987 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (89 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 303 (0.0675134); expected 89.8 (0.02)
Passed bias filter: 124 (0.0276292); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 672.67
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0694 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0695 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0695.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0695/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0695 [L=722]
Description: pcrA 4=Probable DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-191 637.0 30.2 1.2e-191 636.7 30.2 1.0 1 TIGR01073 pcrA: ATP-dependent DNA helicase PcrA
4.4e-150 499.2 16.8 5.3e-150 498.9 16.8 1.0 1 TIGR01075 uvrD: DNA helicase II
2.4e-148 493.3 30.8 3e-148 493.0 30.8 1.0 1 TIGR01074 rep: ATP-dependent DNA helicase Rep
5e-42 141.8 40.9 3.6e-19 66.1 6.5 5.3 4 TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subuni
1.1e-33 114.4 43.0 6.9e-20 68.7 15.5 4.2 4 TIGR00609 recB: exodeoxyribonuclease V, beta subunit
2.9e-29 100.0 19.3 4e-09 33.3 0.1 5.1 5 TIGR02784 addA_alphas: double-strand break repair helicase A
Domain annotation for each model (and alignments):
>> TIGR01073 pcrA: ATP-dependent DNA helicase PcrA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 636.7 30.2 1.7e-194 1.2e-191 1 711 [. 6 704 .. 6 718 .. 0.92
Alignments for each domain:
== domain 1 score: 636.7 bits; conditional E-value: 1.7e-194
TIGR01073 1 lleglneeqkeavkttegPLLilaGaGsGktrvLthriahllaekkvaPeniLaitftnkaakemkervekllgevaedlwistfhslcvriLrrdid 98
ll+ ln++q +av +t+ P+ i+aGaGsGktrv+t +ia+l+++k++ P++iLa+tftnkaakemkerv ++ ++ ++ +istfh+ c+++Lr d +
MMSYN1_0695 6 LLDLLNPQQLAAVINTDKPVRIIAGAGSGKTRVITTKIAYLIEKKHIDPTRILAVTFTNKAAKEMKERVLQITKNQKKSPFISTFHAWCSKVLRIDGK 103
6889********************************************************************************************** PP
TIGR01073 99 kiGlnknfsildesdqksllktivkdkdl.....DekkfePksilgkisnaknellepedfakeaadylekvvaevyeeyqkkLlrnnalDfdDLilt 191
++Gl+ +f i+d++dqk+++k+ +k+ ++ D+k f+ k+il+ki ++k+el++p+++ +a++++++ a +y+ yq+ Ll+nn++DfdDL ++
MMSYN1_0695 104 HVGLKDKFLIIDSDDQKRIIKNALKESNIelsenDKKTFD-KKILYKIKEWKEELVDPDEAILNANSTYDRNSAIIYKLYQETLLKNNSIDFDDLQIY 200
*************************999955554556665.7799***************************************************** PP
TIGR01073 192 tieLfekvpdvleyyqrkfryilvDeyqDtnraqytlvrlLaersknlcvvGDaDqsiygfrgaditniLsfekDypdatvilLeqnyrstkniLqaa 289
Lf++ +++l+ +++ ++y+lvDe+qDtn++q+ l++ L+ ++++l+vvGD Dq+iy++rga++++iL+f+k y++a i+L+qnyrstk+iL+ +
MMSYN1_0695 201 VYLLFKNHQEILNKWRNAYDYVLVDEFQDTNDIQFSLIKFLTINTNHLTVVGDPDQTIYSWRGAKLDIILNFNKTYSNAISIVLNQNYRSTKQILDIS 298
************************************************************************************************** PP
TIGR01073 290 neviennserkpkklwtenseGekitlyeadtekdearfviseikklrkeeelkagdlailyrtnaqsrvleeallkanlpykivGGlkfydrkeikD 387
n+ i+nn+ r+ k++ t+n++G+k+ l e+++++ ea +v +ik+l k++ +++d+ ilyr na s+ +e +l+++ +p++++GG+kf +rk ikD
MMSYN1_0695 299 NSFIKNNKFREHKEIFTNNKSGKKVVLKECNSKTSEASYVSFKIKELIKQGY-HYKDIFILYRMNAWSQEFEKELINKKIPFQLIGGIKFRERKVIKD 395
************************************************9986.9******************************************** PP
TIGR01073 388 vlaylrvlanpdDdvsleriin.vPkrgiGassleklrelakeenislfeaikeveeigslaaksaeklkefaelleelreq.vellsvtevveevle 483
++a+l++++ +Dd+s +r++ +Pk iG+ ++ek+ ++a+ ++is+f+ i+++++ l + +++l+e+ e+++ ++ + +++ e+++ +l
MMSYN1_0695 396 AMAFLKMISI-KDDLSSQRVLSlIPK--IGNITIEKIINIANLNHISIFDLITNEDKT--LLQSITKNLDELIEVFKTAHQLyLDNTNIEEILKYLLI 488
******9986.577999999983577..9************************99875..4666777788888888777665156999********** PP
TIGR01073 484 ksgylemLkeekteeaesrlenl.dellsvvkefedes..edkslvdfleklaLvadldeleeeeGdavtlmtlhaakGLefpvvflvGleegvfPha 578
+sgy ++Lk ++++++ ++ l d+l++ ++f++++ ed+ l++fl++ aL++d+de ++ d+v+l+t+haakGLe +vf++Gl++g+fP
MMSYN1_0695 489 QSGYENKLKVKNEHDDLDNINALyDQLKRFDENFDANYysEDNKLIAFLQEEALTSDIDEAQQI--DKVSLLTVHAAKGLENKIVFITGLNQGIFPTR 584
*************9998888777456777788888887889********************995..9******************************* PP
TIGR01073 579 rsledekeleeerrlayvgitraeeeLyltkaksrllfgrleanipsrfleeipdelletkstgereatsakaaslsrkkqasrktasqakaeaktls 676
s +++keleeerr yv++tra+eeL+lt k + + + ps+f++e+ ++l e +s+ ++ + k+q+++++ + + ++++
MMSYN1_0695 585 LSENNQKELEEERRALYVALTRAKEELFLTYVKGDYSHIMQSELKPSKFIHELDKDLYEFESQF----LNS---QIYDKNQHKTPSFYVS--PKQHNL 673
**************************************99999**************9988872....222...2334445555555544..445788 PP
TIGR01073 677 wavGdrvshkkfGvGtvvsvkGkgddaelkiafps 711
++vGd v+hk fG+G +++v + +l+i+f++
MMSYN1_0695 674 YNVGDYVEHKLFGKGIITKVI----NDQLQISFTN 704
*****************9986....4566666655 PP
>> TIGR01075 uvrD: DNA helicase II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 498.9 16.8 7.1e-153 5.3e-150 1 701 [. 6 704 .. 6 718 .. 0.90
Alignments for each domain:
== domain 1 score: 498.9 bits; conditional E-value: 7.1e-153
TIGR01075 1 lldglndkqreavaaplenllvlaGaGsGktrvlvhriawllsveevseysimavtftnkaaaemrkrieellakskrgmwiGtfhglahrllrahhl 98
lld ln++q+ av + + + ++aGaGsGktrv++++ia+l++ +++ + i+avtftnkaa+em++r+ ++ +++k++ +i tfh+ + ++lr+ +
MMSYN1_0695 6 LLDLLNPQQLAAVINTDKPVRIIAGAGSGKTRVITTKIAYLIEKKHIDPTRILAVTFTNKAAKEMKERVLQITKNQKKSPFISTFHAWCSKVLRIDGK 103
79************************************************************************************************ PP
TIGR01075 99 daklpedfqildsddqlrllkrllkalnl....deklfpprqaawyinaqkdeGlrpeh.ieaeddpvertllkiyaeyqeacdraGlvdfaelllra 191
++l ++f i+dsddq r++k lk n+ ++k+ +++ + i + k+e + p++ i + ++ + r+ iy+ yqe+ ++ +df +l + +
MMSYN1_0695 104 HVGLKDKFLIIDSDDQKRIIKNALKESNIelseNDKKTFDKKILYKIKEWKEELVDPDEaILNANSTYDRNSAIIYKLYQETLLKNNSIDFDDLQIYV 201
**************************9995554588899999************999653777888999***************************** PP
TIGR01075 192 yellrnkelllqhyrerfkeilvdefqdtnkiqyawlrllagetgkvlivGdddqsiygwrGakveniqkflkdfksaetirleqnyrstanileaan 289
y l++n++ +l+++r+ + +lvdefqdtn+iq++ +++l+ +t ++ +vGd dq+iy wrGak++ i +f k + +a +i l+qnyrst++il+ +n
MMSYN1_0695 202 YLLFKNHQEILNKWRNAYDYVLVDEFQDTNDIQFSLIKFLTINTNHLTVVGDPDQTIYSWRGAKLDIILNFNKTYSNAISIVLNQNYRSTKQILDISN 299
************************************************************************************************** PP
TIGR01075 290 aliannderlGkklwtegeeGekislysafneldearfvverikaweeeGgaldeiavlyrsnaqsrvleeallrasipyriyGGlrfferqeikdal 387
+ i+nn+ r k+++t+ ++G+k+ l ++ ea +v +ik++ ++G+++++i +lyr na s+ +e+ l++++ip+++ GG++f er+ ikda+
MMSYN1_0695 300 SFIKNNKFREHKEIFTNNKSGKKVVLKECNSKTSEASYVSFKIKELIKQGYHYKDIFILYRMNAWSQEFEKELINKKIPFQLIGGIKFRERKVIKDAM 397
************************************************************************************************** PP
TIGR01075 388 aylrlianrnddaafervvntPtrGiGdrtldevrkaarergltlwqaavellqekvlagraasalarfleliealaeetadlpl.aeqidrvlkdsg 484
a+l++i+ + dd + +rv+ ++ iG+ t++++ ++a+ + +++++ ++ ++k+l +++l +++e+ ++ + +l l +++i+++lk
MMSYN1_0695 398 AFLKMISIK-DDLSSQRVLSLIPK-IGNITIEKIINIANLNHISIFDLITN--EDKTLLQSITKNLDELIEVFKTAH----QLYLdNTNIEEILKYLL 487
******975.778889***99876.**********************9999..899999888888877776665443....34441234555555555 PP
TIGR01075 485 llemykqe.kgekaearienleelvtaarefk...lpeeaedlleltaflshaaleaGegqadagedavqlmtlhsakGlefplvflvGleeGlfPse 578
++ y+++ k +++++ ++n++ l ++f + +++ +l afl + al + ++a++ ++ v l+t+h+akGle + vf++Gl++G+fP++
MMSYN1_0695 488 IQSGYENKlKVKNEHDDLDNINALYDQLKRFDenfDANYYSEDNKLIAFLQEEALTSDIDEAQQIDK-VSLLTVHAAKGLENKIVFITGLNQGIFPTR 584
555565541344566789999999999999983322334566899*************999999865.9***************************** PP
TIGR01075 579 msldekGrleeerrlayvgitrarkkltltyaearrlygkekyhipsrfieelPeevle..evrlkaqvsrsvslarvgaavkdeiddagfklGqrvr 674
s +++ leeerr yv++tra++ l+lty + + ++ +ps+fi+el +++ e l++q++++ +++ + v+ +++ +++G v+
MMSYN1_0695 585 LSENNQKELEEERRALYVALTRAKEELFLTYVKGDYSHIMQSELKPSKFIHELDKDLYEfeSQFLNSQIYDKNQHKTPSFYVS-PKQHNLYNVGDYVE 681
********************************************************976213446777777766655555444.478999******** PP
TIGR01075 675 hakfGeGvivdlegsgessrlqiafek 701
h+ fG+G+i ++ + +lqi+f +
MMSYN1_0695 682 HKLFGKGIITKVIN----DQLQISFTN 704
********988764....356666655 PP
>> TIGR01074 rep: ATP-dependent DNA helicase Rep
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 493.0 30.8 4e-151 3e-148 2 643 .. 10 647 .. 9 663 .. 0.89
Alignments for each domain:
== domain 1 score: 493.0 bits; conditional E-value: 4e-151
TIGR01074 2 lnpkqkeaveyveGPllvlaGaGsGktkvivnkiayliekcgykakkiaavtftnkaaremkervaktlkkkeakgllistfhslGldilkkeaealg 99
lnp+q +av + P+ ++aGaGsGkt+vi+ kiayliek + + +i avtftnkaa+emkerv + ++k++ k istfh+ ++l+ + +++g
MMSYN1_0695 10 LNPQQLAAVINTDKPVRIIAGAGSGKTRVITTKIAYLIEKKHIDPTRILAVTFTNKAAKEMKERVLQ-ITKNQKKSPFISTFHAWCSKVLRIDGKHVG 106
8****************************************************************76.788999999********************* PP
TIGR01074 100 lksnfslfdetdqlallkelleke.l...eedkdllk.klkstisnwkndlltPeqalasaknekekevakvyeryqaklraynaldfddlillPvll 192
lk f ++d++dq+ ++k+ l+++ + e+dk++ + k+ +i +wk +l+ P++a+ +a+++ +++ a++y+ yq++l + n +dfddl + ll
MMSYN1_0695 107 LKDKFLIIDSDDQKRIIKNALKESnIelsENDKKTFDkKILYKIKEWKEELVDPDEAILNANSTYDRNSAIIYKLYQETLLKNNSIDFDDLQIYVYLL 204
*****************99776542322367777775268899******************************************************* PP
TIGR01074 193 lkeneevrkkWqkkiryllvdeyqdtntsqyelvkllvgerarftvvGdddqsiysWrGakpenlvklkedfPqlkvikleqnyrstsrilkaanili 290
+k+++e+ +kW++ y+lvde+qdtn+ q+ l+k+l+ + ++tvvGd dq+iysWrGak + ++++++ + + i l+qnyrst++il ++n +i
MMSYN1_0695 205 FKNHQEILNKWRNAYDYVLVDEFQDTNDIQFSLIKFLTINTNHLTVVGDPDQTIYSWRGAKLDIILNFNKTYSNAISIVLNQNYRSTKQILDISNSFI 302
************************************************************************************************** PP
TIGR01074 291 annphvfekklfselgeGeklkvieakneeheaerivaeiiaeklvdktqykdyailyrGnhqsrllekalqkkriPyklsggtsffsraeikdllsy 388
+nn+ +k++f++ ++G+k+ + e++ + ea + +i e +++ +ykd ilyr n s+ +ek l +k+iP++l gg f +r+ ikd +++
MMSYN1_0695 303 KNNKFREHKEIFTNNKSGKKVVLKECNSKTSEASYVSFKIK-ELIKQGYHYKDIFILYRMNAWSQEFEKELINKKIPFQLIGGIKFRERKVIKDAMAF 399
**************************************987.888889************************************************** PP
TIGR01074 389 lrllvnpdddaaflrivn.tPkreiGsatleklgeyaaekekslfeaseelellqklseraaeklkkftellkeirkkaer.seavelvrslvedidy 484
l+++ +dd ++ r++ +Pk iG+ t+ek+ + a+ +++s+f+ +++ + ++l + +++l +++e++k ++ ++ +e+++ l+ ++ y
MMSYN1_0695 400 LKMISIKDDLSS-QRVLSlIPK--IGNITIEKIINIANLNHISIFDLITNED--KTLLQSITKNLDELIEVFKTAHQLYLDnTNIEEILKYLLIQSGY 492
***988776655.677762575..**********************998765..56777777778888888877777655404556899********* PP
TIGR01074 485 eewlretsesekaaelrlknveelvewlk...emlegdeedekmtleqvvkkltlrdllerkeeeeesdqvqlmtlhaskGlefpyvflvGmeegilP 579
e++l+ ++e++ n++ l++ lk e+++ + +e +l +++ +l + ++ e ++ d+v+l t+ha+kGle + vf+ G+++gi+P
MMSYN1_0695 493 ENKLKVKNEHDDL-----DNINALYDQLKrfdENFDANYYSEDNKLIAFLQEEALTSDID---EAQQIDKVSLLTVHAAKGLENKIVFITGLNQGIFP 582
****987776655.....677777766661115555666666666777777777766666...67899****************************** PP
TIGR01074 580 hqssiee.dnveeerrlayvGitrakkeltltlckerrqyGelvrpepsrfldelPqedlkweke 643
+ s ++ +++eeerr +yv +trak+el+lt+ k + + + +ps+f++el ++ ++e +
MMSYN1_0695 583 TRLSENNqKELEEERRALYVALTRAKEELFLTYVKGDYSHIMQSELKPSKFIHELDKDLYEFESQ 647
**99876268**************************999999999**********9987776655 PP
>> TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.8 2.0 9.8e-18 7.3e-15 5 151 .. 13 143 .. 10 155 .. 0.88
2 ! 66.1 6.5 4.8e-22 3.6e-19 346 479 .. 180 301 .. 162 304 .. 0.92
3 ! 18.6 9.9 1e-07 7.8e-05 533 807 .. 308 578 .. 302 583 .. 0.74
4 ! 20.1 0.6 3.6e-08 2.7e-05 850 877 .. 587 614 .. 581 636 .. 0.84
Alignments for each domain:
== domain 1 score: 51.8 bits; conditional E-value: 9.8e-18
TIGR02785 5 eQweaivakgqdiLVsAsAGSGKTaVLveRiikkilsg.vdvdrLLvvTFTnaaAkemkerieealekelaeepekkhlrrQlallnkAnIsTldsFc 101
+Q +a++++++ + + A AGSGKT V+ +i i ++ +d r+L vTFTn+aAkemker+ +++k+ +++p IsT++++c
MMSYN1_0695 13 QQLAAVINTDKPVRIIAGAGSGKTRVITTKIAYLIEKKhIDPTRILAVTFTNKAAKEMKERVL-QITKNQKKSPF---------------ISTFHAWC 94
799*****************************9999888**********************95.57776666655...............******** PP
TIGR02785 102 lkvirkyyylldldPsFriltdeeellLkkevlddvleeeyekedkeafl 151
kv+r + + l +F i + ++++ ++k++l+++ e +++dk++f+
MMSYN1_0695 95 SKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKESNIEL-SENDKKTFD 143
*********************9999999999998875544.455557775 PP
== domain 2 score: 66.1 bits; conditional E-value: 4.8e-22
TIGR02785 346 eafeaeKreknvldfsDlehyalqILsnenedssevaesyrekFeEvlvDEYQDtnlvQEsilqllkrgeeeegnlFmVGDvKQSIYrFRlAdPslFl 443
+ ++++ ++n +df+Dl+ y + + +n+ +e+ +++r+ ++ vlvDE+QDtn +Q s++++l+ + ++ l VGD Q IY++R A + l
MMSYN1_0695 180 KLYQETLLKNNSIDFDDLQIYVYLLFKNH----QEILNKWRNAYDYVLVDEFQDTNDIQFSLIKFLTIN---TNHLTVVGDPDQTIYSWRGAKLDIIL 270
5688888899*************999998....5*********************************95...6779********************** PP
TIGR02785 444 eKYkrfaqegeeegkrIiLaeNFRSrkevldatNll 479
+ k +++ I+L++N+RS+k++ld N
MMSYN1_0695 271 NFNKTYSN-----AISIVLNQNYRSTKQILDISNSF 301
*9999999.....568****************9976 PP
== domain 3 score: 18.6 bits; conditional E-value: 1e-07
TIGR02785 533 deeaeildkaeqeaevvaekikelikeefkv.ydkktgeyrpvkYkdiviLlrsrekalqileelkkqgIPvkvndaenYfqatEvrvmlslLrvIdN 629
e++ei ++ + +vv+++ + +e v + k+ ++ +Ykdi iL r + + +++++el +++IP++ + + ++ +++L++I
MMSYN1_0695 308 REHKEIFTNNKSGKKVVLKECNSKTSEASYVsFKIKELIKQGYHYKDIFILYRMNAWSQEFEKELINKKIPFQLIGGIKFRERKVIKDAMAFLKMISI 405
45556666666666666666666666555551333333456789****************************************************75 PP
TIGR02785 630 PlQDipLvavlrSpivgldeeeLaki.rlen.kdssfyealksyvkaekl...eeedelaeklkrFldklqkwrefaktqsvseLiwkiYeetgyldy 722
D+ vl S i ++ + + ki ++n ++ s+++++++ k + + ++l e ++ F + ++ + + +++e++ ++ + gy +
MMSYN1_0695 406 -KDDLSSQRVL-SLIPKIGNITIEKIiNIANlNHISIFDLITNEDK---TllqSITKNLDELIEVFKTA---HQLYLDNTNIEEILKYLLIQSGYENK 495
.5677777776.5555555555544314455455566666664444...33447888888888888765...56677788899999999999998877 PP
TIGR02785 723 vgglpaGkqRqaNLraLyerAkeyEktsFkG..LfqFvrfIerlqekqkDlaeavavseeenvVrlmtIHkSKGLEfPvvfvlgldk 807
+ + + ++ N++aLy++ k++++ F ++ ++I lqe+ l+++ ++++ + V l+t+H+ KGLE +vf++gl++
MMSYN1_0695 496 LK-VKNEHDDLDNINALYDQLKRFDEN-FDAnyYSEDNKLIAFLQEE--ALTSDIDEAQQIDKVSLLTVHAAKGLENKIVFITGLNQ 578
75.678888999************864.4431134566788888775..5888888899999**********************987 PP
== domain 4 score: 20.1 bits; conditional E-value: 3.6e-08
TIGR02785 850 klkkellsEemRvlYVAlTRAkekLiLv 877
+++++ l+Ee R lYVAlTRAke L+L
MMSYN1_0695 587 ENNQKELEEERRALYVALTRAKEELFLT 614
4667889*******************95 PP
>> TIGR00609 recB: exodeoxyribonuclease V, beta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.4 1.2 1.3e-10 1e-07 16 67 .. 29 79 .. 19 92 .. 0.85
2 ? -0.8 0.3 0.092 69 115 166 .. 87 137 .. 83 163 .. 0.62
3 ! 68.7 15.5 9.2e-23 6.9e-20 277 473 .. 123 318 .. 105 350 .. 0.80
4 ! 25.0 10.8 1.5e-09 1.1e-06 613 813 .. 440 616 .. 427 673 .. 0.79
Alignments for each domain:
== domain 1 score: 28.4 bits; conditional E-value: 1.3e-10
TIGR00609 16 ASAGTGKTftiaalvlrlllekglltveeiLvvTFTkaAteELktRirerie 67
A AG GKT i + l+ +k + +iL+vTFT++A +E+k+R+ + +
MMSYN1_0695 29 AGAGSGKTRVITTKIAYLIEKK-HIDPTRILAVTFTNKAAKEMKERVLQITK 79
99*********98766555555.************************87555 PP
== domain 2 score: -0.8 bits; conditional E-value: 0.092
TIGR00609 115 iyTihgfCqrvleqyafesdeifeeelkedeslllaeivkdfwrenfknlpk 166
i+T h +C +vl+ +++++ +++l+ d+++ i ++++ n++ ++
MMSYN1_0695 87 ISTFHAWCSKVLRIDGKHVGL-KDKFLIIDSDDQKRIIKNALKESNIELSEN 137
899999999999999999875.455555555554444444444444443333 PP
== domain 3 score: 68.7 bits; conditional E-value: 9.2e-23
TIGR00609 277 klkkfsqkelekkakkkttpkhavfeeidklakereel...fslkkkvrlkllkevqeeLkkekkrrreigfddllsrLekaLkseegeklaqaireq 371
+ + ++++++e + k+t + +++ +i+++ +e ++ +++ + + + + +++ +++ i+fddl + + + k+ +++++ r+
MMSYN1_0695 123 IKNALKESNIELSENDKKTFDKKILYKIKEWKEELVDPdeaILNANSTYDRNSAIIYKLYQETLLKNNSIDFDDLQIYVYLLFKNH--QEILNKWRNA 218
456688899999988899999999999999999887766533333333334444455555666778899******99998777774..57******** PP
TIGR00609 372 ypivLIDEFQDtDpqQyrIFsklfiaqketaLfLIGDPKQaIYsFRgADiftYlqakekar..arytLdtNyRStaaLveainklFskaeepflekni 467
y vL+DEFQDt+ +Q++ + l i+ + L +GDP Q IYs+RgA + l+ ++ + ++L++NyRSt+++ n+ ++++ f+e++
MMSYN1_0695 219 YDYVLVDEFQDTNDIQFSLIKFLTINT--NHLTVVGDPDQTIYSWRGAKLDIILNFNKTYSnaISIVLNQNYRSTKQILDISNSFIKNNK--FREHKE 312
*******************99888877..6******************999888888888876899*************99999888887..777765 PP
TIGR00609 468 pfipve 473
f++ +
MMSYN1_0695 313 IFTNNK 318
566544 PP
== domain 4 score: 25.0 bits; conditional E-value: 1.5e-09
TIGR00609 613 ilglsaeeleelkqd.ekelervvekfreykdiwqkqgvlamlqklileekigerlLskeggersltdllhlaelLqeaaekeenklallrwleeqis 709
i+ l ++e ++l q+ k+l++++e f++++++ ++ + k +l + +e+ L+ ++ + +l ++ l + L++ +e+++ + +
MMSYN1_0695 440 IFDLITNEDKTLLQSiTKNLDELIEVFKTAHQLYLDNTNIEEILKYLLIQSGYENKLKVKNEHDDLDNINALYDQLKRFDENFDANYYSEDNKLIAFL 537
55555555555554435899*****************99999999999999999999999999***************99999887776666666666 PP
TIGR00609 710 keeeleeeiirlesDaelvkivTiHkSKGLeypiVflpfitdakksddslaiyhddesrkllldlakleeqakklaederlaedlrllYVAlTRAkkq 807
+ee+l + i + + v + T+H++KGLe iVf+ +++ +l+e+ ++++l e+ r lYVAlTRAk++
MMSYN1_0695 538 QEEAL-TSDIDEAQQIDKVSLLTVHAAKGLENKIVFITGLNQGIFP-------------------TRLSEN-----NQKELEEERRALYVALTRAKEE 610
66664.3444555567889*****************9998765442...................355664.....899******************* PP
TIGR00609 808 lvigla 813
l++
MMSYN1_0695 611 LFLTYV 616
**9865 PP
>> TIGR02784 addA_alphas: double-strand break repair helicase AddA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.3 0.1 5.4e-12 4e-09 15 63 .. 27 76 .. 12 79 .. 0.87
2 ! 5.4 0.0 0.0014 1.1 112 168 .. 87 144 .. 86 160 .. 0.78
3 ! 33.1 2.0 6.1e-12 4.5e-09 345 495 .. 176 304 .. 161 323 .. 0.80
4 ! 20.9 0.5 2.9e-08 2.2e-05 579 796 .. 348 574 .. 336 584 .. 0.77
5 ! 16.6 0.4 5.8e-07 0.00044 838 872 .. 584 618 .. 575 627 .. 0.84
Alignments for each domain:
== domain 1 score: 33.3 bits; conditional E-value: 5.4e-12
TIGR02784 15 vsAnAGsGKThvLtdRViRLLLa.gvePekiLClTyTkAaAaemqnRvfk 63
+ A AGsGKT+v+t +++ L+ + ++P +iL +T+T aA em++Rv++
MMSYN1_0695 27 IIAGAGSGKTRVITTKIAYLIEKkHIDPTRILAVTFTNKAAKEMKERVLQ 76
6799***************9975269**********************86 PP
== domain 2 score: 5.4 bits; conditional E-value: 0.0014
TIGR02784 112 iQTIHafCealLrqFplEAnvaghFevlddraaaalleearrelleaaaae.deelae 168
i T Ha+C ++Lr ++ +F ++d ++++++++a++e + +++ ++++++
MMSYN1_0695 87 ISTFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKESNIELSENdKKTFDK 144
78************************************99887544444441444444 PP
== domain 3 score: 33.1 bits; conditional E-value: 6.1e-12
TIGR02784 345 eallkeyealKkergllDfeDLIertvaLLarksagaWVlYkLDrgiDHiLvDEAQDTspeQWeiieaLaeeFfsGegarevaeRtiFaVGDeKQsIY 442
+ + k y+++ ++ +Df+DL LL ++ + +l k ++ D +LvDE QDT+ Q+++i+ L+ + + + +VGD Q+IY
MMSYN1_0695 176 AIIYKLYQETLLKNNSIDFDDLQIYVY-LLFKNHQE--ILNKWRNAYDYVLVDEFQDTNDIQFSLIKFLTIN-----------TNHLTVVGDPDQTIY 259
5566789999999999*****966555.55555544..799999**********************988643...........335789********* PP
TIGR02784 443 sFQGadpeefaeerrelerkveavekkfedvkLtlSfRStedvLaaVDevfad 495
s+ Ga+ + + + ++++++ ++ L+ +RSt+++L + +++
MMSYN1_0695 260 SWRGAKLDIILNFNKTYSN--------AISIVLNQNYRSTKQILDISNSFIKN 304
*******988876666654........45699************998777666 PP
== domain 4 score: 20.9 bits; conditional E-value: 2.9e-08
TIGR02784 579 ravrpgDilvLVrkRdalvealiralkrrgipvAGaDRLkltshlavkDLlalgrfvllPeDDLsLAalLk.sP.lfglseddlfeLAakRkekslwa 674
+ +++Di++L r +a ++ ++l +++ip +k + +kD +a ++++ +DDLs +L P + +++ +++ ++A+ + s+++
MMSYN1_0695 348 QGYHYKDIFILYRM-NAWSQEFEKELINKKIPFQLIGGIKFRERKVIKDAMAFLKMISI-KDDLSSQRVLSlIPkIGNITIEKIINIANLNHI-SIFD 442
55688999999875.678999999999*****9999999***************99866.899*999998634625568999*****999866.9999 PP
TIGR02784 675 aLrkaaaeeaelaevlavldellsk...a.....deltpfefyarlLgrddgRrkllaRLGaEaedaldeflslaLalert....glpsLqafletle 760
++++ +++ l++++++ldel + a d+++ e++++lL + + +kl + ++ d ++++ ++ + +++ + + +++ l+
MMSYN1_0695 443 LITNE--DKTLLQSITKNLDELIEVfktAhqlylDNTNIEEILKYLLIQSGYENKLKVKNEHDDLDNINALYDQLKRFDENfdanYYSEDNKLIAFLQ 538
88865..44456666666665554300021111244556688889999999999998888888899999999987765544111145566899***** PP
TIGR02784 761 aadieiKRemdkerdevRvmTvHaaKGleapvVflv 796
++++ + ++ d+v ++TvHaaKGle +Vf+
MMSYN1_0695 539 EEALTSDIDEAQQIDKVSLLTVHAAKGLENKIVFIT 574
**********************************86 PP
== domain 5 score: 16.6 bits; conditional E-value: 5.8e-07
TIGR02784 838 areelkekaeeEyrRLLYVamTRAedrLivcgarg 872
+e ++k+ eE rR LYVa+TRA++ L+++ +g
MMSYN1_0695 584 RLSENNQKELEEERRALYVALTRAKEELFLTYVKG 618
567788999*******************9986665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (722 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 373 (0.0831105); expected 89.8 (0.02)
Passed bias filter: 94 (0.0209447); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.38u 0.48s 00:00:00.86 Elapsed: 00:00:00.73
# Mc/sec: 1420.31
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0695 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0696 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0696.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0696/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0696 [L=251]
Description: RDD family protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (251 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 381 (0.084893); expected 89.8 (0.02)
Passed bias filter: 71 (0.01582); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.18
# Mc/sec: 2002.48
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0696 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0697 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0697.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0697/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0697 [L=318]
Description: glycosyltransferase, group 2 family protein 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.00047 17.5 0.4 0.00047 17.5 0.4 2.1 3 TIGR04009 wcaE: colanic acid biosynthesis glycosyltransferas
0.00079 16.4 0.5 0.0012 15.9 0.5 1.2 1 TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine sy
0.0027 15.3 0.1 0.0042 14.6 0.1 1.3 1 TIGR04283 glyco_like_mftF: transferase 2, rSAM/selenodomain-
Domain annotation for each model (and alignments):
>> TIGR04009 wcaE: colanic acid biosynthesis glycosyltransferase WcaE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.5 0.4 3.1e-07 0.00047 1 111 [. 1 112 [. 1 127 [. 0.80
2 ? -2.0 0.5 0.26 4e+02 164 186 .. 232 254 .. 223 260 .. 0.83
3 ? -2.9 0.2 0.53 7.9e+02 49 71 .. 290 311 .. 286 316 .. 0.69
Alignments for each domain:
== domain 1 score: 17.5 bits; conditional E-value: 3.1e-07
TIGR04009 1 mllsvitvafrnyegvvktwrslrnlardpelsfewivvdggsndgt.aefleklngefnlrfvsekdkgiyda..mnkgialaqgryalflnsgdvf 95
ml+s i + ++ + t s+++ +++ + i+ d d t +++++++ + + +se++ a n ++la+g+y +f++ gd +
MMSYN1_0697 1 MLVSFIIASQAHLDRLKTTVDSIKHQTNNSHQ--TIIISDSKYTDNTkRQYIKEIFDNSENIVLSENNIPQDTAtdWNCAMQLANGKYVVFVKEGDFL 96
78899988888999999999999997776654..4688898877776379****99999888999987554444116899999*************** PP
TIGR04009 96 hedvadfvrqlarqkd 111
+ + + +++++ q++
MMSYN1_0697 97 YPNFVEEIQKISDQHN 112
*999999999887754 PP
== domain 2 score: -2.0 bits; conditional E-value: 0.26
TIGR04009 164 lqykvssdyalaaklyksgyafk 186
+yk+ sd a+ y++ y f
MMSYN1_0697 232 NKYKLLSDQLTYAHYYQTCYKFL 254
589999**9999********996 PP
== domain 3 score: -2.9 bits; conditional E-value: 0.53
TIGR04009 49 efleklngefnlrfvsekdkgiy 71
fle+++ +fn r+ + ++ iy
MMSYN1_0697 290 VFLENKDTKFNQRM-NDFERFIY 311
68999999999885.45555555 PP
>> TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.9 0.5 7.8e-07 0.0012 46 133 .. 2 91 .. 1 106 [. 0.88
Alignments for each domain:
== domain 1 score: 15.9 bits; conditional E-value: 7.8e-07
TIGR03937 46 kvsllvpcynegenveetisallklkypnleviainDGs.kDdta.eildklakkedrlrvihleenqGkaaalneglkaakseylvciD 133
vs+++++ + ++ t++++ +++ ++ + i+i D +D+t + ++++ ++++++++ + + q a+ n +++ a+ +y+v +
MMSYN1_0697 2 LVSFIIASQAHLDRLKTTVDSIKHQTNNSHQTIIISDSKyTDNTKrQYIKEIFDNSENIVLSENNIPQDTATDWNCAMQLANGKYVVFVK 91
59*********************************99853799862679********99999999999******************9874 PP
>> TIGR04283 glyco_like_mftF: transferase 2, rSAM/selenodomain-associated
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.1 2.8e-06 0.0042 2 108 .. 4 119 .. 3 137 .. 0.79
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 2.8e-06
TIGR04283 2 SiiiPvlnEaetleelladlqalreeal.Evivvdggssdktveia.kslga.......kviesekGRarQmnaGakaAkgeiLlFLHaDtrlpkdll 90
S ii ++l+++++++++++++++ +i++d++ +d+t + k+ + + + ++ a n++++ A+g++++F+ l ++++
MMSYN1_0697 4 SFIIASQAHLDRLKTTVDSIKHQTNNSHqTIIISDSKYTDNTKRQYiKEIFDnsenivlSENNIPQDTATDWNCAMQLANGKYVVFVKEGDFLYPNFV 101
67777888889999******999998886888**********86441332224554333334456689********************9999****** PP
TIGR04283 91 eaikkalakekkkagaFk 108
e+i+k+ +++++ F+
MMSYN1_0697 102 EEIQKISDQHNADLIEFN 119
*****9977776666676 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (318 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 398 (0.0886809); expected 89.8 (0.02)
Passed bias filter: 120 (0.026738); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 2174.58
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0697 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0706 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0706.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0706/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0706 [L=582]
Description: ABC transporter, permease protein 3=Putative Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-29 100.9 23.3 9.9e-20 69.0 5.8 2.1 2 TIGR01097 PhnE: phosphonate ABC transporter, permease protei
0.00023 19.6 4.3 0.00023 19.6 4.3 4.0 4 TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease pr
Domain annotation for each model (and alignments):
>> TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.0 5.8 4.4e-23 9.9e-20 11 249 .. 47 294 .. 39 297 .. 0.80
2 ! 37.8 9.6 1.5e-13 3.3e-10 9 204 .. 328 529 .. 320 581 .. 0.75
Alignments for each domain:
== domain 1 score: 69.0 bits; conditional E-value: 4.4e-23
TIGR01097 11 llllvalv..vlalaelels.larllagleqlaellae.llppd......wsylpkilkalleTlaiallgtllaavlalplallaArnltpspllsl 98
l+l+++ + + +++ ++++ + +++++l l+++ ++ +l+++ + + ++l+ l+ T+++al+gt+++++la++ ++l+ +++ ++ ls
MMSYN1_0706 47 LVLVLVGYcfYSQASLIKIDnFYQVAKKLVLLFSFENKnFLDTSyisneyTNLFLDTLSLLWVTIKLALTGTFIGFILAVITSFLSFSKVNNKF-LSY 143
33333333113333334443344444455445555444355555766554334667999*****************************987777.999 PP
TIGR01097 99 lvrlllnllRavpelvlAlifvaavGlGplaGvLAlalhtvGvlgklfaeaiEevdegpvealratGasklqvivygvlPqvlpeflsltlyrleiNv 196
l+ ++ +lR+ pel++ ++ + l+ L + +t l k +++++++ d + + ++G sk++ ++ + P + ++++l ++ +e+N+
MMSYN1_0706 144 LLSAVILILRSTPELIFITLITSTF-RNDLSLLLVYIWFTWLWLHKYYIDMLNSFDLQAYYVSISQGNSKFKAFFKEIYPRIKNRVIALFIFSFESNI 240
9***************977666665.6889999999999*********************************************************** PP
TIGR01097 197 RaatvlGlvGAGGIGleLaeai.klfeydevsaillvilvvvvlidllsaklRk 249
R a++l + GIG ++ ++ ++++ ++ llv++ +++++ll +k
MMSYN1_0706 241 RWASILAALSLPGIGRLIVYGSeNTAHFNQLGIPLLVLMSFILVLELLNYLFKK 294
***************98776554999********************98766665 PP
== domain 2 score: 37.8 bits; conditional E-value: 1.5e-13
TIGR01097 9 llllllvalvvlalaelelslarllagleqlaellaellppd........wsy.lpkilkalleTlaiallgtllaavlalplallaArnltpsplls 97
++ l+++ l++++++++ +++ ++ +l+ + +++++ll+p+ + ++ + ++++l+ +++++++++v++++ l + +l + ++
MMSYN1_0706 328 IISLIFISLTIISIITF-INIPIYIFNLDYVKSFFNNLLNPNfvsfsifnK-HiENNPILLIWNSLQFTIVAMFICIVITIIGIRLQSIRLNN-LFVV 422
33333333333333333.344445557899999999999999777555321.2233467789*****************98877777777655.559* PP
TIGR01097 98 llvrlllnllRavpelvlAlifvaavGlGplaGvLAlalhtvGvlgklfaeaiEevdegpvealratGasklqvivygvlPqvlpeflsltlyrleiN 195
+++r l l+R +p++v+ +f ++ ++ + lh+++ +k + e +++++ + ++ l+ +G s+ q+++ vlP + ef+sl+++ +e+
MMSYN1_0706 423 IICRSLNVLIRLIPTIVYFYVFHPIFSNVLTLVIIVVSLHQASSKAKQLVEVVDNLNIQIINNLKIQGYSNNQIFLKYVLPAIKIEFISLSIFYFELI 520
***************************9999999**************************************************************** PP
TIGR01097 196 vRaatvlGl 204
+R++ + +
MMSYN1_0706 521 FRTSITYYI 529
**9976555 PP
>> TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.6 4.3 1e-07 0.00023 9 64 .. 107 164 .. 100 170 .. 0.91
2 ? -2.5 0.3 0.78 1.8e+03 54 64 .. 272 282 .. 266 288 .. 0.86
3 ? 0.4 9.6 0.1 2.3e+02 5 65 .. 387 445 .. 383 466 .. 0.69
4 ? -2.7 0.4 0.95 2.1e+03 64 87 .. 498 521 .. 495 529 .. 0.66
Alignments for each domain:
== domain 1 score: 19.6 bits; conditional E-value: 1e-07
TIGR01726 9 lllTllisvlalllglvlglllallrlsk..nrllrrlatvyveliRgtPllvqlfli 64
l++T+++++++ ++g++l++++++l+ sk n++l++l ++++ ++R+tP l+++ li
MMSYN1_0706 107 LWVTIKLALTGTFIGFILAVITSFLSFSKvnNKFLSYLLSAVILILRSTPELIFITLI 164
79**********************999863378*******************999876 PP
== domain 2 score: -2.5 bits; conditional E-value: 0.78
TIGR01726 54 gtPllvqlfli 64
g+Pllv++ +i
MMSYN1_0706 272 GIPLLVLMSFI 282
89999999876 PP
== domain 3 score: 0.4 bits; conditional E-value: 0.1
TIGR01726 5 llkGlllTllisvlalllglvlglllallrlsknrllrrlatvyveliRgtPllvqlfliy 65
+++ l++T++ +++++++ +++g+ l +rl n ++ + + + liR +P +v ++++
MMSYN1_0706 387 IWNSLQFTIVAMFICIVI-TIIGIRLQSIRLN-NLFVVIICRSLNVLIRLIPTIVYFYVFH 445
555566666666666655.3456666666654.4567788899999********9988876 PP
== domain 4 score: -2.7 bits; conditional E-value: 0.95
TIGR01726 64 iyfgLpligirlsaltaavlaltl 87
+ ++Lp i i++ +l + + l++
MMSYN1_0706 498 LKYVLPAIKIEFISLSIFYFELIF 521
447899988887766666555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (582 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 397 (0.0884581); expected 89.8 (0.02)
Passed bias filter: 65 (0.0144831); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.22
# Mc/sec: 3798.99
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0706 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0707 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0707.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0707/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0707 [L=249]
Description: ABC transporter, ATP-binding protein 3=Putative Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-64 215.6 8.0 1.8e-64 215.4 8.0 1.0 1 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
2.2e-46 156.2 2.1 3.4e-46 155.6 2.1 1.3 1 TIGR02673 FtsE: cell division ATP-binding protein FtsE
1.8e-45 152.9 9.1 2.4e-45 152.5 9.1 1.2 1 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
2.9e-40 136.2 1.9 3.8e-40 135.8 1.9 1.1 1 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
6e-38 129.0 0.0 7.2e-38 128.8 0.0 1.1 1 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
1.2e-37 127.5 3.6 1.4e-37 127.2 3.6 1.0 1 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
4.9e-37 125.6 1.0 5.9e-37 125.3 1.0 1.1 1 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
5.5e-35 119.1 2.0 6.4e-35 118.9 2.0 1.0 1 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
9.4e-35 118.1 3.7 1.5e-34 117.4 3.7 1.3 1 TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-bi
4.9e-34 115.9 4.5 8.5e-34 115.1 4.5 1.3 1 TIGR04520 ECF_ATPase_1: energy-coupling factor transporter A
1.3e-33 114.3 4.1 1.7e-33 114.0 4.1 1.0 1 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
1.5e-33 114.5 6.7 1.8e-33 114.2 6.7 1.0 1 TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC tran
1.8e-33 114.1 1.1 2.4e-33 113.7 1.1 1.1 1 TIGR02769 nickel_nikE: nickel import ATP-binding protein Nik
1.2e-32 111.2 0.5 2.8e-32 110.0 0.5 1.5 1 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
7.1e-32 108.8 0.3 9.7e-32 108.4 0.3 1.2 1 TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP
9.3e-32 108.2 0.4 1.2e-31 107.7 0.4 1.0 1 TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding p
1.6e-31 107.4 0.1 2.2e-31 107.0 0.1 1.2 1 TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
1.7e-31 107.4 1.0 6.5e-31 105.5 1.0 1.7 1 TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC trans
2.1e-30 103.8 2.4 3e-30 103.3 2.4 1.1 1 TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-bindin
4.2e-30 102.8 0.0 8.8e-30 101.7 0.0 1.4 1 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
4.8e-30 102.6 0.0 1.2e-29 101.3 0.0 1.5 1 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
7.4e-30 101.8 0.8 9.5e-30 101.4 0.8 1.1 1 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
1.2e-29 101.1 0.4 1.6e-29 100.7 0.4 1.1 1 TIGR00958 3a01208: antigen peptide transporter 2
1.5e-29 101.1 0.1 2e-29 100.7 0.1 1.1 1 TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit,
2.2e-28 97.2 0.8 3.1e-28 96.8 0.8 1.2 1 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
2.9e-28 96.9 0.6 5.7e-28 95.9 0.6 1.5 1 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
6.7e-28 95.5 5.6 8e-28 95.3 5.6 1.0 1 TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-bi
1.2e-27 94.7 0.2 2e-27 94.0 0.2 1.3 1 TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transport
3.3e-27 93.2 0.3 8.1e-27 91.9 0.3 1.6 1 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
3.4e-27 93.2 0.0 4.1e-27 92.9 0.0 1.0 1 TIGR01288 nodI: nodulation ABC transporter NodI
4.7e-27 93.0 2.4 5.9e-27 92.7 2.4 1.0 1 TIGR01186 proV: glycine betaine/L-proline transport ATP bind
1.3e-26 91.7 0.2 1.9e-26 91.1 0.2 1.2 1 TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transp
1.3e-26 91.3 11.2 1.5e-26 91.1 11.2 1.0 1 TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
2.1e-26 90.7 0.1 2.9e-26 90.2 0.1 1.1 1 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
3e-26 89.8 0.7 5.4e-26 88.9 0.7 1.4 1 TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC trans
3.9e-26 89.7 0.6 6.8e-26 88.9 0.6 1.5 1 TIGR00955 3a01204: pigment precursor permease
5.1e-25 86.3 2.0 6.4e-25 86.0 2.0 1.1 1 TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding pr
9.9e-25 85.1 1.9 4.7e-12 43.2 0.4 3.0 3 TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD f
1.4e-24 84.5 1.6 1.6e-24 84.3 1.6 1.0 1 TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system
1.7e-24 84.8 0.0 2.9e-24 84.0 0.0 1.3 1 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
5.3e-24 82.9 0.3 3.5e-23 80.2 0.3 1.9 1 TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein
6.2e-24 82.6 0.1 1e-23 81.9 0.1 1.3 1 TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system
7.3e-24 82.5 0.0 7e-23 79.3 0.0 1.9 1 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
3.2e-23 80.6 9.0 4.9e-23 79.9 9.0 1.2 1 TIGR03740 galliderm_ABC: lantibiotic protection ABC transpor
4.5e-22 76.7 0.1 6.4e-22 76.2 0.1 1.2 1 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
5.9e-21 72.8 0.5 1.1e-20 71.9 0.5 1.3 1 TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-bindi
8.6e-21 72.1 2.1 1.3e-20 71.6 2.1 1.2 1 TIGR01192 chvA: glucan exporter ATP-binding protein
1.3e-20 71.9 0.6 2.3e-20 71.1 0.6 1.3 1 TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding protei
4.5e-20 69.5 2.5 5.5e-20 69.2 2.5 1.1 1 TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protei
4.2e-19 66.9 4.9 5.8e-19 66.4 4.9 1.2 1 TIGR01978 sufC: FeS assembly ATPase SufC
4.5e-18 63.6 0.0 8.1e-18 62.7 0.0 1.4 1 TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein
6.5e-18 62.8 0.1 1.4e-17 61.7 0.1 1.5 1 TIGR01187 potA: polyamine ABC transporter, ATP-binding prote
4.7e-16 55.4 1.1 6.9e-16 54.8 1.1 1.2 1 TIGR01271 CFTR_protein: cystic fibrosis transmembrane conduc
5.6e-15 52.8 4.2 1.1e-14 51.9 4.2 1.4 1 TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
2.6e-14 49.8 0.2 3.7e-14 49.3 0.2 1.2 1 TIGR00956 3a01205: pleiotropic drug resistance family protei
3.2e-14 49.3 1.9 2.6e-13 46.3 1.9 1.8 1 TIGR00957 MRP_assoc_pro: multi drug resistance-associated pr
4.4e-13 46.5 0.7 5.7e-13 46.1 0.7 1.2 1 TIGR00954 3a01203: peroxysomal long chain fatty acyl transpo
3.1e-12 43.4 4.3 9.9e-08 28.6 1.1 2.0 2 TIGR00630 uvra: excinuclease ABC subunit A
1.3e-09 33.5 0.1 1.6e-09 33.1 0.1 1.0 1 TIGR01257 rim_protein: rim ABC transporter
0.00025 18.6 1.9 0.0004 17.9 0.1 2.1 2 TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase
0.0043 14.7 0.1 0.0099 13.5 0.1 1.6 1 TIGR03263 guanyl_kin: guanylate kinase
0.0057 14.3 0.1 0.013 13.2 0.0 1.6 1 TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-
------ inclusion threshold ------
0.016 12.3 0.0 0.032 11.3 0.0 1.5 1 TIGR00750 lao: LAO/AO transport system ATPase
Domain annotation for each model (and alignments):
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 215.4 8.0 2.6e-66 1.8e-64 1 241 [. 4 244 .. 4 246 .. 0.97
Alignments for each domain:
== domain 1 score: 215.4 bits; conditional E-value: 2.6e-66
TIGR02315 1 llevenlskvypngk.qalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvl 97
++e++++s++y+n + +lk++nl+i +Gelva+iG+sG Gkstl++ i + ++ +g++++ +k++ k +kk++r + +kig++ q nli +v
MMSYN1_0707 4 VIELKEISVQYNNRSdLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRLFISKIGFLTQTPNLIYTDNVY 101
5899*******98651689****************************9998899******************************************** PP
TIGR02315 98 envLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkek 195
+n++ + +k+++ ++++++++++k + +e L+++++ ++a ++++LsGGqqqRv ia+ l+++++lilaDEP++ LD k+s +v+++lk+i+k +
MMSYN1_0707 102 NNIIRSTSKYKNNFYKFFSILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISK-Q 198
**********************************************************************************************87.5 PP
TIGR02315 196 gitvivnlHqvdlakkyadrivglkageivfdgasselddevleki 241
+ t++vn+H+++l+k+y dr++++++ +ivfd++++++++ +l++i
MMSYN1_0707 199 NKTILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKDIKQWQLDRI 244
78****************************************9998 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 155.6 2.1 4.8e-48 3.4e-46 1 213 [. 4 225 .. 4 226 .. 0.90
Alignments for each domain:
== domain 1 score: 155.6 bits; conditional E-value: 4.8e-48
TIGR02673 1 iielekvskeyaagv.eaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvl 97
+iel+++s +y++ +Lkd++l i +ge++ ++G+sG Gk+tl+k++++ ++p +G+v+v+ +d+ ++++++ l+ kig + q +l+++ +v+
MMSYN1_0707 4 VIELKEISVQYNNRSdLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRLFISKIGFLTQTPNLIYTDNVY 101
699********9655168******************************************************************************** PP
TIGR02673 98 envalalevrgkk........eeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrG 187
+n+ + + +++ +++ + ++ e l+ +++ dka + +elsgG qqRv ia+ ++++ el+laDePt nlD+++s ++l++lk+++k+
MMSYN1_0707 102 NNIIRSTSKYKNNfykffsilTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQN 199
***87765443331111111155566677889999*************************************************************** PP
TIGR02673 188 ttvivathdeelvervkkrvlelekg 213
t++v hd +lv+r+ rv+ ++++
MMSYN1_0707 200 KTILVNIHDLSLVKRYFDRVIAINNK 225
*********************99876 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 152.5 9.1 3.4e-47 2.4e-45 1 206 [] 7 222 .. 7 222 .. 0.86
Alignments for each domain:
== domain 1 score: 152.5 bits; conditional E-value: 3.4e-47
TIGR03608 1 lkniskkfkdk..eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveen 96
lk+is +++++ +lk+++l+i +Gelvai+G sG GKstl i+ + ++ +g+v +++k+ k+++k+++ + +k+g+l q +L+ +++v +n
MMSYN1_0707 7 LKEISVQYNNRsdLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRLF-ISKIGFLTQTPNLIYTDNVYNN 103
68899999998667*********************************999*************999988877655.589******************* PP
TIGR03608 97 lelalklkkks........kkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegkt 186
+ + k++ +++++ ++ e l+++++ k k+ elsgG++qRv +a++l+k+ elilADEPt++LDkk++ evl++lk++ +++kt
MMSYN1_0707 104 IIRSTSKYKNNfykffsilTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKT 201
966554443331111111123444456688999999999999******************************************************** PP
TIGR03608 187 iiivtHdpevaek.adrviel 206
i++ Hd ++ ++ +drvi +
MMSYN1_0707 202 ILVNIHDLSLVKRyFDRVIAI 222
*******98766537999975 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 135.8 1.9 5.4e-42 3.8e-40 465 688 .. 4 236 .. 1 242 [. 0.85
Alignments for each domain:
== domain 1 score: 135.8 bits; conditional E-value: 5.4e-42
TIGR03375 465 eielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlr...rnigyvpqdvtLfyG.tlr 558
ielk++s +Y+++++ +Lk+++l+i Ge vaiiG G GKstl k++++ ++p +G+v++ + di ++++++ r ++ig+++q ++L+y ++
MMSYN1_0707 4 VIELKEISVQYNNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRlfiSKIGFLTQTPNLIYTdNVY 101
599*******************************************************************999988555799*********9973699 PP
TIGR03375 559 dNialgapaaede..ellraaela.GvtefvkkhpkG.ldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella. 651
+Ni ++++++++ + + ++++ +t f k + ld+ + ++LSgGQ+q v +a++l+kd +++l DEPts+lD+++ ++l+ Lk++++
MMSYN1_0707 102 NNIIRSTSKYKNNfyKFFSILTRKqKITIFEKLDELNiLDKAF-FKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKq 198
9999888877664234555554430344444444333033333.45679***********************************************98 PP
TIGR03375 652 dkTlvlvtHrtslLe.lvdriivldkGrivadGpkdev 688
+kT+++ H sl++ dr+i +++ +iv d + +
MMSYN1_0707 199 NKTILVNIHDLSLVKrYFDRVIAINNKQIVFDKKTKDI 236
9************98358**************887766 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 128.8 0.0 1e-39 7.2e-38 321 527 .. 4 220 .. 1 222 [. 0.83
Alignments for each domain:
== domain 1 score: 128.8 bits; conditional E-value: 1e-39
TIGR02857 321 slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldad...swrkqiawvpQkPll.fegtva 413
+el+++sv+y++r+ +lk+++l++ +gelva++G+SG+GKstl k++ ++p +G+++v ++++ +++++ + ++i+++ Q+P l + + v
MMSYN1_0707 4 VIELKEISVQYNNRSdLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKqkrLFISKIGFLTQTPNLiYTDNVY 101
699************99************************************************9999998833245689********8625689** PP
TIGR02857 414 enirlarkdaseae..vkealeragldelvkalpq.gleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.eg 507
+ni ++++ +++ l+r + ++ ++l++ + + + ++LSgGq+qR+ +A++l++d +l+l DEPt++LD++t evl+ l++++ ++
MMSYN1_0707 102 NNIIRSTSKYKNNFykFFSILTRKQKITIFEKLDElNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISkQN 199
**998877777765333334444333344444432134455556789***********************************************9899 PP
TIGR02857 508 rtvllvaHrlalaela.dkiv 527
+t+l+ H+l+l++++ d+++
MMSYN1_0707 200 KTILVNIHDLSLVKRYfDRVI 220
9*********99876437776 PP
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.2 3.6 2e-39 1.4e-37 1 232 [. 5 236 .. 5 245 .. 0.88
Alignments for each domain:
== domain 1 score: 127.2 bits; conditional E-value: 2e-39
TIGR04521 1 iklknvsyiYqkgtpfekkalkdvsleiekgefvaiiGhtGsGKstliqhlngLlkptsGeveidgleikakkkkkkklkelrkkvglvFQfpekQLF 98
i+lk++s Y++ + lkd++l+i +ge+vaiiG +G GKstl + + l+p +G+v++ +++i + +kk+ + + +k+g++ Q p+ ++
MMSYN1_0707 5 IELKEISVQYNNRSD---LVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQ--KRLFISKIGFLTQTPN-LIY 96
8999******99875...68******************************9999***************5544433..58899**********6.69* PP
TIGR04521 99 eetvlkdiafgpknlglseee...veervkealelvgld.eellerspf...eLSGGqkrrvAiagvLamepevLvlDEptaGLDpkgrkellellkk 189
++v+++i+ + ++++ + + + +r +++ +ld ++l++ f eLSGGq++rv ia +L + e+++ DEpt+ LD+k+ e+l++lk+
MMSYN1_0707 97 TDNVYNNIIRSTSKYKNNFYKffsILTRKQKITIFEKLDeLNILDKAFFkvsELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKN 194
*********9999888766542225666666666677885577777777444699******************************************* PP
TIGR04521 190 lkkekgktvilvtHsmedvaeladrvivlkkGkvvldgtpeev 232
++k+ +kt+++ H++ v ++ drvi +++ ++v+d++++++
MMSYN1_0707 195 ISKQ-NKTILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKDI 236
***9.999*999***************************9987 PP
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.3 1.0 8.3e-39 5.9e-37 2 219 .. 5 227 .. 4 228 .. 0.83
Alignments for each domain:
== domain 1 score: 125.3 bits; conditional E-value: 8.3e-39
TIGR02982 2 ikirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltli.gglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnlleslt 98
i+++e++ y+ + vl+dinl+i +ge+v + GpsG Gk tl+ +i +lr v +G++kv++k++ + ++k+ kiG++ q+ nl+ +
MMSYN1_0707 5 IELKEISVQYN--NRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIiNSLRPV-KGQVKVFDKDILKFNKKQKRLFISKIGFLTQTPNLIYTDN 99
56666666554..44567****************************99752778876.7****************999999***************** PP
TIGR02982 99 aeqnvrm.alelkek......lsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklar 189
+ +n+ + + k++ + ++++k + e l ++ + ++ k ++lsgGq+qrv ia+ l++ +l+ladePt+ ldkk++ ev+++l+++++
MMSYN1_0707 100 VYNNIIRsTSKYKNNfykffsILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISK 197
*99985505566666322211223445555667788899999999*************************************************9987 PP
TIGR02982 190 eqgttillvthdnrild.vadrivkmedGkl 219
q+ til+ hd +++ dr++ +++ ++
MMSYN1_0707 198 -QNKTILVNIHDLSLVKrYFDRVIAINNKQI 227
.67899******8776527899999887665 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 118.9 2.0 9e-37 6.4e-35 2 230 .. 4 237 .. 3 245 .. 0.91
Alignments for each domain:
== domain 1 score: 118.9 bits; conditional E-value: 9e-37
TIGR03411 2 iLevedvsvsfdgfk..alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklke..aeiarlGigRkfqkpsvfeeltvl 95
++e++++sv+++ + l+d++l++ +gel +iiGp G Gk+tl+ +i+ rp +G+v++ +kd++k ++ +++ + ig q+p+++ + v
MMSYN1_0707 4 VIELKEISVQYNNRSdlVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKkqKRLFISKIGFLTQTPNLIYTDNVY 101
67899999999976522689***********************************************987651155677899999************* PP
TIGR03411 96 enlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelaker 193
+n+ ++++ k+ + +f+ l++++k +i e l+ +++ +ka k ++Ls Gq+q++ei+ ll+++ +l+l DeP++ + ++ ++ ++lk+++k++
MMSYN1_0707 102 NNIIRSTSKYKNNFYKFFSILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQN 199
**********************************************************************************************9875 PP
TIGR03411 194 .svvvvehDmefvrelaekvtvlheGkvlaeGsldevq 230
+++v hD++ v+++ ++v +++ +++ + + ++++
MMSYN1_0707 200 kTILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKDIK 237
1666667**************99999998887776665 PP
>> TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 117.4 3.7 2.2e-36 1.5e-34 6 219 .. 9 227 .. 4 229 .. 0.83
Alignments for each domain:
== domain 1 score: 117.4 bits; conditional E-value: 2.2e-36
TIGR02211 6 nltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalen 103
+++ +y++ + vlk+++l+i +gelvai+G sG Gkstl+ ++ +p +G+v++ k++ k+++++ +l k+Gf+ q l+ ++ +n
MMSYN1_0707 9 EISVQYNN--RSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQ-KRLFISKIGFLTQTPNLIYTDNVYNN 103
55555544..44569******************************99999****************98765.5788899******************* PP
TIGR02211 104 vamPlliskks......k..keakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkeknt 193
+ + k++ + ++ k + e l+++++ +++ k selsGG++qrv ia+ l+++ +l+ladePt+nldkkt+ +++++l+++ k+++t
MMSYN1_0707 104 IIRSTSKYKNNfykffsIltRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKT 201
*8776544443111111211223333446688899999******************************************************887665 PP
TIGR02211 194 allvvthdlelakk.ldrvlelkdgkl 219
+lv hdl+l+k+ +drv+ +++ ++
MMSYN1_0707 202 -ILVNIHDLSLVKRyFDRVIAINNKQI 227
.78899******98579*****99987 PP
>> TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 115.1 4.5 1.2e-35 8.5e-34 1 224 [. 5 237 .. 5 246 .. 0.84
Alignments for each domain:
== domain 1 score: 115.1 bits; conditional E-value: 1.2e-35
TIGR04520 1 ievenvsfkYeeeekkalkdvsleiekgefvaiiGhNGsGKsTlakllnglllpeegkvlvdgletl..eeenlweirkkvglvfqnPd........n 88
ie++++s +Y+++++ +lkd++l+i +ge vaiiG G GKsTl k++ l p +g+v+v + + l ++++ +k+g++ q P+ n
MMSYN1_0707 5 IELKEISVQYNNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILkfNKKQKRLFISKIGFLTQTPNliytdnvyN 102
799**********************************************************888765115666667789*********6333322333 PP
TIGR04520 89 qlvgatveedvaFglENlgvpreeikkrveealkkvgleefrkkepkkLSGGqkqrvaiagvlalepeiiilDEatsmLDpkgrkevletvkklkkee 186
++ +t + F + +++ k + e l+++++ + + + ++LSGGq+qrv ia +l + e+i+ DE+ts LD k+ evl+++k+++k++
MMSYN1_0707 103 NIIRSTSKYKNNFYK-FFSILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQN 199
444444444444432.23445555566788999*************************************************************9876 PP
TIGR04520 187 kltvisitHdleeave.adrvivlekgkivaegtpkeif 224
k t+++ Hdl+ + + drvi +++ +iv + + k+i
MMSYN1_0707 200 K-TILVNIHDLSLVKRyFDRVIAINNKQIVFDKKTKDIK 237
6.888888****997637***************999985 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 114.0 4.1 2.4e-35 1.7e-33 2 231 .. 5 237 .. 4 244 .. 0.81
Alignments for each domain:
== domain 1 score: 114.0 bits; conditional E-value: 2.4e-35
TIGR00972 2 levknlklfygeke..alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkl.dvvelrkkvGmvfqkpnp.fp 95
+e k++++ y++++ +lkd+nl+i + +++a+iGpsG Gkstl++ + +n l ++G+v + +kdi + + ++ + +k+G + q+pn ++
MMSYN1_0707 5 IELKEISVQYNNRSdlVLKDINLDIFQGELVAIIGPSGVGKSTLFKII--INSLR---PVKGQVKVFDKDILKFNKkQKRLFISKIGFLTQTPNLiYT 97
788999*****9876799****************************86..33333...468**********9865505556789**********8356 PP
TIGR00972 96 msiydnvayglrlkgikdkkeldeiveesLkkaalwdevk.....dklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliq 188
+y+n+ ++ + + k ++ ++ +k ++++++ dk+ + +LsGGqqqr+ ia+ l + e++L DePts LD +++ ++ ++++
MMSYN1_0707 98 DNVYNNIIRSTSKYKNNFYKFFSI--LTRKQKITIFEKLDelnilDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLK 193
89****998865554333333333..3344666777654311122666667789******************************************** PP
TIGR00972 189 eLkkk.ytivivthnmqqaarvsdktaffleGelveegeteqif 231
+++k+ ti++ h+++ +r d+++ + + ++v + +t++i
MMSYN1_0707 194 NISKQnKTILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKDIK 237
*97764899999************************99999985 PP
>> TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 114.2 6.7 2.6e-35 1.8e-33 3 228 .. 5 245 .. 3 248 .. 0.86
Alignments for each domain:
== domain 1 score: 114.2 bits; conditional E-value: 2.6e-35
TIGR03522 3 vevsdlsklygkqk..aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrk....niGylPeh.nPlyld.ly. 91
+e++++s +y ++ +l+++ +++ +Ge+v +GP G Gkstl ki+ l++ G v+v ++d+lk +++ ++ +iG+l + n +y d +y
MMSYN1_0707 5 IELKEISVQYNNRSdlVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRlfisKIGFLTQTpNLIYTDnVYn 102
677888888886542389**************************************************9988876443369***97537789873454 PP
TIGR03522 92 ..vreylefsaalyklkg...rklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiak.dk 183
+r +++ + yk+ + rk+k + e +++ + +++ k+++ls G +qrv +ak l+ d ++++ dePt+ ld +e+ +v+k+i+k +k
MMSYN1_0707 103 niIRSTSKYKNNFYKFFSiltRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKqNK 200
446777889999998654111555555678888999999******************************************************97379 PP
TIGR03522 184 tvilsthimqevealcdrviiinkGkivadkkleelkaaekkkvi 228
t+++ h + v+ drvi in+ +iv dkk +++k+ + ++i
MMSYN1_0707 201 TILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKDIKQWQLDRII 245
************************************999887776 PP
>> TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 113.7 1.1 3.4e-35 2.4e-33 20 237 .. 15 235 .. 4 244 .. 0.84
Alignments for each domain:
== domain 1 score: 113.7 bits; conditional E-value: 3.4e-35
TIGR02769 20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiig..... 112
++ vl++++l + +Ge va++G sG Gkstl ++++ +P kG+v+ +d+ k+++kq++ f ++ ++ q + + + + ++ii+
MMSYN1_0707 15 NNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRLFISKIGFLTQT-PNLIYTDNVYNNIIRstsky 111
555678*****************************************************************998885.44555555555555511111 PP
TIGR02769 113 .ePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfith 209
+ + ++ s+ ++k i e l+++++ ++ k+ ++lsGGq qr+ ia+ l + +li+ de snld +++l+ lk++ ++ + + h
MMSYN1_0707 112 kNNFYKFFSILTRKQKITIFEKLDELNILDKAFFKV-SELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKTILV-NIH 207
134445556666677777889999999988888876.79**********************************************999877555.55* PP
TIGR02769 210 dlrlvqkfaqrvlvldeGqiveeikvae 237
dl+lv+++ +rv+ +++ qiv ++k+ +
MMSYN1_0707 208 DLSLVKRYFDRVIAINNKQIVFDKKTKD 235
*********************9887665 PP
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.0 0.5 4e-34 2.8e-32 337 555 .. 4 230 .. 1 241 [. 0.81
Alignments for each domain:
== domain 1 score: 110.0 bits; conditional E-value: 4e-34
TIGR02204 337 eiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelr...erlalvpqdsal.faasv 430
ie++e++ +y +r+d ++l++++l + +Ge va++GPsG Gkstl+++++ P +G++++ d+ ++++++ r +++ + +q ++l ++ +v
MMSYN1_0707 4 VIELKEISVQYNNRSD-LVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRlfiSKIGFLTQTPNLiYTDNV 100
5899**********95.79*************************************************9999988774447889999*9986267789 PP
TIGR02204 431 leniryGrpdasdeeveaaa..kaaeadefisklpeGy.dtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk. 524
+ni + ++ + + + + +kl+e + + +LsGGq+qr+ ia+ ++kd ++L de ts Ld ++ v + l++++k
MMSYN1_0707 101 YNNIIRSTSKYKNNFYKFFSilTRKQKITIFEKLDELNiLDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKq 198
9999766665555443333300333333445666653212333346679*********************************************9862 PP
TIGR02204 525 grttlviahrLatvlk.adrivvldkGriveq 555
++t lv h L+ v++ dr++ +++ +iv
MMSYN1_0707 199 NKTILVNIHDLSLVKRyFDRVIAINNKQIVFD 230
57888889******9746***********965 PP
>> TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 108.4 0.3 1.4e-33 9.7e-32 9 214 .. 22 239 .. 13 249 .] 0.84
Alignments for each domain:
== domain 1 score: 108.4 bits; conditional E-value: 1.4e-33
TIGR01188 9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRr....sigvvpqkasvdedLtarenl........ellgely 94
++++nl++ +ge+++++GP G GK+t+ k++ l+P +G+++v+ D+++ ++ +r +ig +q+ ++ + ++n+ + + +++
MMSYN1_0707 22 LKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRlfisKIGFLTQTPNLIYTDNVYNNIirstskykNNFYKFF 119
799***********************************************977655543333899999998876665666665111110002334455 PP
TIGR01188 95 glpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadklad 192
+ ++++ + e l+ +++ ++a kv ++sgG+++r+e+a li++ e++ DEPt+ LD +t ++ ++++++ k+++til+ h+l + ++ d
MMSYN1_0707 120 SILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKTILVNIHDLSLVKRYFD 217
566666666778999999******************************************************************************** PP
TIGR01188 193 rvaiidkGkiiaedtpeeLKer 214
rv+ i++ +i+ ++++K+
MMSYN1_0707 218 RVIAINNKQIVFDKKTKDIKQW 239
***********99999999974 PP
>> TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 107.7 0.4 1.8e-33 1.2e-31 332 547 .. 5 228 .. 2 237 .. 0.86
Alignments for each domain:
== domain 1 score: 107.7 bits; conditional E-value: 1.8e-33
TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLR...rqvalvsqdvvL.Fddtiae 425
+e+++++++y++++ +l++i+l++ +Ge va++G+sG Gkstl +++ + p +G++ + ++d+ +++ ++ R +++ + +q L + d + +
MMSYN1_0707 5 IELKEISVQYNNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRlfiSKIGFLTQTPNLiYTDNVYN 102
899********************************************************9999999999888887333567788998654389***** PP
TIGR02203 426 nvaYgel.eevdeaeveealaaaylkdlvdklpe.GldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlm.kgR 520
n+ + + + + ++l+ + + +kl+e + + + s+LsGGq qR+ ia+ l+kd +++ De ts LD+ +v + L+++ +++
MMSYN1_0707 103 NIIRSTSkYKNNFYKFFSILTRKQKITIFEKLDElNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISkQNK 200
*98887723444557777888877778888887534556667889***********************************************962688 PP
TIGR02203 521 ttlviahRLstiek.aDrivvlddGkiv 547
t lv h Ls +++ Dr++ +++ +iv
MMSYN1_0707 201 TILVNIHDLSLVKRyFDRVIAINNKQIV 228
999999******9746********9998 PP
>> TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 107.0 0.1 3.1e-33 2.2e-31 315 532 .. 3 228 .. 1 239 [. 0.88
Alignments for each domain:
== domain 1 score: 107.0 bits; conditional E-value: 3.1e-33
TIGR01842 315 gelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwd...retlGksiGYlPqdveLf.eGtv 408
+ +e++++s++ + +lk+i++ + +Ge +aiiGpsg Gks+L ++++ + p++G+v++ d+ +++ ++ + +iG+l q +L+ + v
MMSYN1_0707 3 KVIELKEISVQYNNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNkkqKRLFISKIGFLTQTPNLIyTDNV 100
6789999*******************************************************966666655511156799**********9962679* PP
TIGR01842 409 aeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegG....aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelka 502
+ni R + +++ ++ + + i ++k + +i ++ ++LsgGq+qR+ +a+ l d l++ DeP +nLD++ + ++k lk++ +
MMSYN1_0707 101 YNNIIRSTS-KYKNNFYKFFSILTRKQKITIFEKLDELNILDKAffkvSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISK 197
*******99.7788899999999999999999999999998865333389************************************************ PP
TIGR01842 503 rkitvvvithrpslle.lvdkilvlkdGalk 532
++ t++v h sl++ d+++ +++ ++
MMSYN1_0707 198 QNKTILVNIHDLSLVKrYFDRVIAINNKQIV 228
*******9**9999873689**999998775 PP
>> TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 105.5 1.0 9.2e-33 6.5e-31 452 663 .. 5 228 .. 1 236 [. 0.86
Alignments for each domain:
== domain 1 score: 105.5 bits; conditional E-value: 9.2e-33
TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavR...rqlGvVLQngrll.sgsile 545
ie+++++ +Y++ + lvL+d++l i +Ge vai+G+SG GKStl+++++ +P +G+v +d+ k+++++ R ++G Q +l+ ++++++
MMSYN1_0707 5 IELKEISVQYNNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRlfiSKIGFLTQTPNLIyTDNVYN 102
99*********************************************************9888*******9998866679*******9974399**** PP
TIGR03797 546 niaggasltldeaweaarmagleeDikamP.mglhTvise...gggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVse...sleklkv 636
ni+ ++s ++ ++ + ++ i+ + ++++ + lSGGQ+QR+ iA+ l++ +++l DE TS LD +t V + +++k +
MMSYN1_0707 103 NIIRSTSKYKNNFYKFFSILTRKQKITIFEkLDELNILDKaffKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKvlkNISKQNK 200
****9998888888888888888887765323334444441225789***********************************9877651115667789 PP
TIGR03797 637 tRiviAHRLSTirn.adrilvleeGrvv 663
t +v H LS +++ dr++ +++ ++v
MMSYN1_0707 201 TILVNIHDLSLVKRyFDRVIAINNKQIV 228
99**********8736****99998887 PP
>> TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 103.3 2.4 4.2e-32 3e-30 2 227 .. 5 235 .. 3 243 .. 0.85
Alignments for each domain:
== domain 1 score: 103.3 bits; conditional E-value: 4.2e-32
TIGR02314 2 iklekiskvfdqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtv 99
i+l++is + +++ l++++l + +g+++ +ig sg gkstl + + +p +g+v v kd+ ++++ + +ig++ q nl+ + v
MMSYN1_0707 5 IELKEISVQY--NNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRLFISKIGFLTQTPNLIYTDNV 100
6677776444..34555689****************************9888889********************99999****************** PP
TIGR02314 100 fgnvalple.lentpke..ki...krkvt..ellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrr 189
++n+ +n+ + i k+k+t e l + + dk s+lsggq+qrv ia+ l + ++l de ts ld t+ +l++lk+i ++
MMSYN1_0707 101 YNNIIRSTSkYKNNFYKffSIltrKQKITifEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQ 198
***98765414443322121222255655336677778889999999************************************************987 PP
TIGR02314 190 lgltillithemdvvkricdevavidkgeliekgtvse 227
+ til+ h++ +vkr d+v i++ +++ + +
MMSYN1_0707 199 -NKTILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKD 235
.78***********************999987665555 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 101.7 0.0 1.2e-31 8.8e-30 6 217 .. 11 229 .. 5 241 .. 0.82
Alignments for each domain:
== domain 1 score: 101.7 bits; conditional E-value: 1.2e-31
TIGR03873 6 rvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrva...lveqdsdaevplsvrdvvalGr 100
v ++ + l+++d++++ +G+l +++GP G Gkstl++++ l+p +G+v++ +d+ ++++++ + ++ + q + +v + ++
MMSYN1_0707 11 SVQYNNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRLFISkigFLTQTPNLIYTDNVYNNIIRST 108
3344445668*************************************************999988877665550005556555444445555555554 PP
TIGR03873 101 iPhrs....lfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvval 194
++ f+ + + + + + l + ++ + a ++s lsGG++qrv++a+ l ++ +l+l dePt ld ++ +e+l++++++++++ t++v +
MMSYN1_0707 109 SKYKNnfykFFSILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKTILVNI 206
4444411114566777777778899999999999999************************************************************* PP
TIGR03873 195 hdlnlaasvcdhvvvldgGrvva 217
hdl+l ++ d+v+ +++ ++v
MMSYN1_0707 207 HDLSLVKRYFDRVIAINNKQIVF 229
***************99988875 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 101.3 0.0 1.6e-31 1.2e-29 335 527 .. 5 205 .. 2 209 .. 0.82
Alignments for each domain:
== domain 1 score: 101.3 bits; conditional E-value: 1.6e-31
TIGR02868 335 lelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevr...rvvsvlaqdaHlFdtt.vre 427
+el+++sv+y++ + vlk+++ld+ +Ge va++G+sG+GKstL ++++ l p kG+v + + ++ ++++++ r + +l q + l t+ v +
MMSYN1_0707 5 IELKEISVQYNNRSDlVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRlfiSKIGFLTQTPNLIYTDnVYN 102
789***********9***************************************************99988776522256789*****9977743999 PP
TIGR02868 428 Nlrlarpdatde..ellaaLervgLadwlraLpd.GldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt 522
N+ + +++ ++L r + ++L + + k + + lSGG++qR+ +A+ L++d +++l DEPt +LD +t+ e+l+ L + ++++
MMSYN1_0707 103 NIIRSTSKYKNNfyKFFSILTRKQKITIFEKLDElNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNK 200
99887777765533566777776666666665542233344556789********************************************8877777 PP
TIGR02868 523 vvlvt 527
++lv
MMSYN1_0707 201 TILVN 205
77764 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 101.4 0.8 1.3e-31 9.5e-30 455 675 .. 4 233 .. 1 240 [. 0.84
Alignments for each domain:
== domain 1 score: 101.4 bits; conditional E-value: 1.3e-31
TIGR01846 455 aiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlr...rqvgvvlqe.nvlfsrsir 548
ie+++i +y++ s vl++++ldi +Ge++ i+GpsG Gkstl k++ P kG+v v ++d+ + + r ++g + q n+++ +
MMSYN1_0707 4 VIELKEISVQYNNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRlfiSKIGFLTQTpNLIYTDNVY 101
699****************************************************************9998888772225677777855999****** PP
TIGR01846 549 dnialakPaiseekviaaaklaGahdfiselkqGyetevge....kGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick. 641
+ni + + +++ + l+ ++ i+ ++ e ++ + k ++lsGGq+qr+ +a+ l+++ +++ de ts ld ++ + + l++i+k
MMSYN1_0707 102 NNIIRSTSKYKNNFYKFFSILTRKQK-ITIFEKLDELNILDkaffKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKq 198
***99999988877777776766554.3333333344444311226799**********************************************963 PP
TIGR01846 642 grtviiiahrlstvra.adrilvlekGkivesGkh 675
++t+++ h ls v++ dr++ +++ +iv + k
MMSYN1_0707 199 NKTILVNIHDLSLVKRyFDRVIAINNKQIVFDKKT 233
7999999*******7637**********9976655 PP
>> TIGR00958 3a01208: antigen peptide transporter 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.7 0.4 2.2e-31 1.6e-29 477 693 .. 3 229 .. 1 240 [. 0.80
Alignments for each domain:
== domain 1 score: 100.7 bits; conditional E-value: 2.2e-31
TIGR00958 477 GkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylh...rkvalVgqEPvl.fsgs 570
++e +++s Y +r+d vlkd+++ + Ge va++GPsG GKSt ++ n +P +Gqv + +k++ +++ k + +k++ q P l ++
MMSYN1_0707 3 KVIELKEISVQYNNRSD-LVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRlfiSKIGFLTQTPNLiYTDN 99
579************97.6*****************************************************98754422389999*****654999* PP
TIGR00958 571 vreNiaYGltktedeevtaaakaanahdFiselekgydtevge....kGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesk 660
v +Ni +k++++ + + + ++ i+ +ek + ++ + k s lsgGq+qr+ iA+ L+++ +++ De tS LD ev ++l +
MMSYN1_0707 100 VYNNIIRSTSKYKNNFYKFFSIL-TRKQKITIFEKLDELNILDkaffKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKktsiEVLKVL-KNI 195
*****999888876654444333.334445555555555554411116799********************************96532333333.356 PP
TIGR00958 661 saksrtvlliahrLstvek.adkilvlkkgsvve 693
s++++t+l+ h Ls+v++ d+++ +++ ++v
MMSYN1_0707 196 SKQNKTILVNIHDLSLVKRyFDRVIAINNKQIVF 229
7899*************98459999999988875 PP
>> TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 100.7 0.1 2.8e-31 2e-29 2 221 .. 5 238 .. 4 246 .. 0.87
Alignments for each domain:
== domain 1 score: 100.7 bits; conditional E-value: 2.8e-31
TIGR03864 2 leveglsfaygkrr..alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldl....rrapkealarlGvvfqqstlDldlsveq 93
+e++++s +y +r+ +l+d++l++ +ge+va++Gp G GkstLf+++ ++ +g++kv+ +d+ +++++ ++++G q + l v +
MMSYN1_0707 5 IELKEISVQYNNRSdlVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDIlkfnKKQKRLFISKIGFLTQTPNLIYTDNVYN 102
678999999998864489**********************************************984443455666799**********998888888 PP
TIGR03864 94 nl.....ry...haaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeg 183
n+ +y + + + ++ + i e+l++l++ ++a kv eL+GG+++rveia+ l+ + +l+L De+t LD ++ ++++ +++++ +++
MMSYN1_0707 103 NIirstsKYknnFYKFFSILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNIS-KQN 199
874444445222445667788888999*************************************************************999998.777 PP
TIGR03864 184 lsvLWathlvdeveae.drlvvlhkGkvlaqGaaaelaa 221
++L h + v++ dr++ +++ +++++ +++++++
MMSYN1_0707 200 KTILVNIHDLSLVKRYfDRVIAINNKQIVFDKKTKDIKQ 238
899*****999998644*************999999876 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 96.8 0.8 4.3e-30 3.1e-28 2 227 .. 6 244 .. 5 246 .. 0.85
Alignments for each domain:
== domain 1 score: 96.8 bits; conditional E-value: 4.3e-30
TIGR03410 2 evenlevaYgese..vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeer..vkaGiayvpqGreifpkltveen 95
e+++++v+Y++ + vl+d++l++ +ge+va++G gvGk+tl+k ++ l+ +G++++ ++di k + +++ + i++ q +++ + v +n
MMSYN1_0707 6 ELKEISVQYNNRSdlVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKrlFISKIGFLTQTPNLIYTDNVYNN 103
6788999997643249*************************************************99766554224689******************* PP
TIGR03410 96 lelglealkkk........ekkipeeiyelFPvlkemlkR..rgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdl 183
+ + ++ k++ ++k + +i+e l+ + k + +LsGGqqq + ia+ L+++ +l+l DePt + e+ kv+k+++k+ +
MMSYN1_0707 104 IIRSTSKYKNNfykffsilTRKQKITIFEKLDELNILDKAffKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQ-NK 200
*99999998887777755544444455555554443333233889***********************************************997.67 PP
TIGR03410 184 aillveqvldfaleladrylvlerGevvaegekeeldeekvkkl 227
+il+ + l++++++ dr++ +++ ++v +++++++++ ++ ++
MMSYN1_0707 201 TILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKDIKQWQLDRI 244
99999******************************999887765 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 95.9 0.6 8.1e-30 5.7e-28 6 211 .. 12 231 .. 5 233 .. 0.75
Alignments for each domain:
== domain 1 score: 95.9 bits; conditional E-value: 8.1e-30
TIGR01277 6 viyeykhlpl..efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyer.....pvsmlfqennlfahltvrqniglGlk 96
v+y+++ + +l + +Ge vai+G+sG Gkstl+++i l p++G++kv dkd ++ ++ + l q nl v +ni
MMSYN1_0707 12 VQYNNRSDLVlkDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKrlfisKIGFLTQTPNLIYTDNVYNNIIRSTS 109
4444443332125789999*****************************************998877622222356899**************976543 PP
TIGR01277 97 pglklnavqkekve......dvarqvGiadylerl...peelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllv 185
k n + + + +++ ++l++ elsGGq+qrv +a+ l+++ ++l dep s ld+k e+l ++k++ +++++t+l+
MMSYN1_0707 110 -KYKNNFYKFFSILtrkqkiTIFEKLDELNILDKAffkVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNI-SKQNKTILVN 205
.3333333333333000000333333333344432222689****************************************988876.5677899999 PP
TIGR01277 186 thslsdaaaiasqvvvvedGkikvls 211
h+ls +++ ++v+ +++ +i +
MMSYN1_0707 206 IHDLSLVKRYFDRVIAINNKQIVFDK 231
9******************9997655 PP
>> TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 95.3 5.6 1.1e-29 8e-28 3 223 .. 6 237 .. 4 245 .. 0.88
Alignments for each domain:
== domain 1 score: 95.3 bits; conditional E-value: 1.1e-29
TIGR04406 3 kaenlaksykkrk..vvkdvslevksgeivGllGPnGaGkttsfymivGlvkadaGkvllddeditklplhera..rlGigylpqeasifrkltveen 96
+ ++++ +y++r+ v+kd++l++ +ge+v ++GP G Gk+t f +i+ +++ +G+v++ d+di k + +++ ig+l+q + + v +n
MMSYN1_0707 6 ELKEISVQYNNRSdlVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRlfISKIGFLTQTPNLIYTDNVYNN 103
56788889988855599************************************************999876654113579**********999***** PP
TIGR04406 97 lkavlelred........ldkeereekleelleeleiahlrekkaaslsGGerrrveiaralaaePkfilldePfagvdPiavsdikklikllkergi 186
+ ++ l+++++ + + e l+el+i + k +lsGG+++rveia+ l+ + ++il deP +++d + +++ k++k++ +++
MMSYN1_0707 104 IIRSTSKYKNnfykffsiLTRKQKIT-IFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNK 200
97766655555888877556655554.55568****************************************************************** PP
TIGR04406 187 GvlitdhnvretldivdrayivseGkvlaeGsaeeiv 223
+l+ h+ + dr +++ +++ + ++++i
MMSYN1_0707 201 TILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKDIK 237
*****************************99999885 PP
>> TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 94.0 0.2 2.8e-29 2e-27 3 234 .. 7 236 .. 5 244 .. 0.83
Alignments for each domain:
== domain 1 score: 94.0 bits; conditional E-value: 2.8e-29
TIGR03005 3 isdvtkrfgelt..vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnl 98
+++++ ++++ + vl++++l++ +Ge va+iGpsG Gkst+++i++ + +G++kv + ++++ ++k r kiG++ q+ nl
MMSYN1_0707 7 LKEISVQYNNRSdlVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDK----------DILKFNKKQKRLFISKIGFLTQTPNL 94
5566666665433399*****************************99877777899999222..........345556677777889*********** PP
TIGR03005 99 fphktvldnvteapvlvkG.......varaeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvl 189
v +n++ + + k + + + e ld + + dka ++lsGGq+qrv ia+ l ++l de+ts ld + evl+vl
MMSYN1_0707 95 IYTDNVYNNIIRSTSKYKNnfykffsILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVL 192
**********999877664222211144444455567889999******************************************************* PP
TIGR03005 190 rrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdei 234
++++++ + t+l+ h++ + + + drv+ ++ +iv + k ++i
MMSYN1_0707 193 KNISKQ-NKTILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKDI 236
**9876.5699*************************999998887 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 91.9 0.3 1.1e-28 8.1e-27 6 189 .. 20 211 .. 14 212 .. 0.84
Alignments for each domain:
== domain 1 score: 91.9 bits; conditional E-value: 1.1e-28
TIGR01166 6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvll.dGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgp....ln.. 96
vlk++nl++ +ge +a++G+ G Gkstl++ + +lrP +G+v + d + l++++k+ + k++++ q p+ +++ +v +++ + n
MMSYN1_0707 20 LVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVfDKDILKFNKKQKRLFISKIGFLTQTPN-LIYTDNVYNNIIRSTskykNNfy 116
39******************************************75277778*******************996.46666666666444311113311 PP
TIGR01166 97 ..lGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdl 189
+ + + + + e l+ ++i + + ++ lsgG+++rv ia ++ +++l dePt++ld++ ++l++l+++ ++ kt+++ hd+ l
MMSYN1_0707 117 kfFSILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKTILVNIHDLSL 211
113344555566688999999999999999**************************************************************988 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 92.9 0.0 5.8e-29 4.1e-27 4 217 .. 4 231 .. 1 242 [. 0.88
Alignments for each domain:
== domain 1 score: 92.9 bits; conditional E-value: 5.8e-29
TIGR01288 4 aidlvgvsksygdk..vvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepv....pararlarakigvvpqfdnldreftvr 95
i+l ++s y ++ +v++d+ + i +ge ++gp g gkst+ ++++ p +g++ v+++++ + rl +kig ++q nl v
MMSYN1_0707 4 VIELKEISVQYNNRsdLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDIlkfnKKQKRLFISKIGFLTQTPNLIYTDNVY 101
68999999999875448***********************************************986322257899************9998888888 PP
TIGR01288 96 enll........vfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllarg 185
+n++ f ++f++ tr+ + +i l+ + ka +v++lsgg ++r+ +a+ li+d +l++ dept+ ld ++ + + l+ + +
MMSYN1_0707 102 NNIIrstskyknNFYKFFSILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQN 199
88763333333358899**************99999999*********************************************************** PP
TIGR01288 186 ktilltthlmeeaerlcdrlcvleagrkiaeg 217
ktil+ h + +r dr+ +++ + + +
MMSYN1_0707 200 KTILVNIHDLSLVKRYFDRVIAINNKQIVFDK 231
********************999876655554 PP
>> TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 92.7 2.4 8.3e-29 5.9e-27 7 209 .. 20 228 .. 15 239 .. 0.84
Alignments for each domain:
== domain 1 score: 92.7 bits; conditional E-value: 8.3e-29
TIGR01186 7 lgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildni.....slglell 99
l ++d++l+i +Ge++ iiG+sG Gkstl +++ + P +G++ + +di + ++++ + ki+++ q l+ + +ni ++ ++
MMSYN1_0707 20 LVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQK-RLFISKIGFLTQTPNLIYTDNVYNNIirstsKYKNNFY 116
6689****************************99999*******************998.566799************99999998333223445555 PP
TIGR01186 100 ki.deqerkekalealklvdleeyedry..PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldeal 194
k+ + rk+k kl +l+ +++ elsGG+qqrv +a+ l + +l+l de+ s ld + e+ + l+++ k +kti+ hdl
MMSYN1_0707 117 KFfSILTRKQKITIFEKLDELNILDKAFfkVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNIS-KQNKTILVNIHDLSLVK 213
43134567777665555555544444441268************************************999999998886.5799************* PP
TIGR01186 195 rlgdrivilkaGeiv 209
r dr++ +++ +iv
MMSYN1_0707 214 RYFDRVIAINNKQIV 228
***********9998 PP
>> TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 91.1 0.2 2.6e-28 1.9e-26 3 214 .. 3 228 .. 1 239 [. 0.76
Alignments for each domain:
== domain 1 score: 91.1 bits; conditional E-value: 2.6e-28
TIGR03265 3 eylsieeiekefeaft..alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlpp.qkrdy....GivfqsYaLfPnltv 93
+ ++++ei+ ++++ + +lkdi+l++ +gelv+++GPsG Gk+tL++ii ++ +G++ + ++di + qkr + G++ q+ L v
MMSYN1_0707 3 KVIELKEISVQYNNRSdlVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKkQKRLFiskiGFLTQTPNLIYTDNV 100
67889999999996652379******************************9999**************987761566553333666666555555555 PP
TIGR03265 94 aeniayGLknkklk......reevaerve..elLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrk 183
+ni ++ k + ++++++ e L+ +++ +++ + lsGGqqqrv +a+ l+ +l+L DeP s LD k ++ + lk++ ++
MMSYN1_0707 101 YNNIIRSTSKYKNNfykffsILTRKQKITifEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQ 198
555544433333221111111234455441166777777777666689***********************************************998 PP
TIGR03265 184 lgvttimvthdqeealslaDrivvmnkgkie 214
+ t ++ hd Dr++ +n+ +i
MMSYN1_0707 199 NK-TILVNIHDLSLVKRYFDRVIAINNKQIV 228
65.556668**99999999***999999886 PP
>> TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 91.1 11.2 2.1e-28 1.5e-26 472 693 .. 3 234 .. 1 240 [. 0.82
Alignments for each domain:
== domain 1 score: 91.1 bits; conditional E-value: 2.1e-28
TIGR01193 472 gdievndvsysyGygse.vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlin...ylPqeP.fifsGsi 564
ie++++s +y s+ vl+di+l+i + e ++++G sG Gkstl k++++ + +G++++ +k++ +++k++ r +i+ +l q P +i++ +
MMSYN1_0707 3 KVIELKEISVQYNNRSDlVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRLFISkigFLTQTPnLIYTDNV 100
568999******98665389*******************************************************99876433399***945788888 PP
TIGR01193 565 lenlllgakenvsqeeikkaveiaeikddieklplGyqtelse....eassisgGqkqrlalarallsdskvlildestsnldlltekkivenllkl. 657
+n++ + + +++ k +i k+ i +++ + ++ + + s++sgGq+qr+ +a+ l+ d ++++ de tsnld t +++ l ++
MMSYN1_0707 101 YNNIIR-STSK-YKNNFYKFFSILTRKQKITIFEKLDELNILDkaffKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNIs 196
888765.4444.456788888888888888777665555555411115679********************************999988888877663 PP
TIGR01193 658 .kdktiifvahrlsvakk.sdkiivldeGkiieqGshk 693
++kti+ h ls+ k+ d++i++++ +i+ + + k
MMSYN1_0707 197 kQNKTILVNIHDLSLVKRyFDRVIAINNKQIVFDKKTK 234
368***********887736*********999776655 PP
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.2 0.1 4.1e-28 2.9e-26 2 213 .. 22 236 .. 21 247 .. 0.80
Alignments for each domain:
== domain 1 score: 90.2 bits; conditional E-value: 4.1e-28
TIGR02770 2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal.....alrgreialilqnPr.....safnPlltikeqlletl 89
+d+nl++ +g+++a++G sG Gks+ + i++ l ++G++ + +k++++ +l +i+++ q P + +n + +++ ++
MMSYN1_0707 22 LKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLR----PVKGQVKVFDKDILKFnkkqkRLFISKIGFLTQTPNliytdNVYNNIIRSTSKYKNNF 115
589**********************98887777666....79***********999777666667789999***973333345565555555555555 PP
TIGR02770 90 kalekls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDl 186
+ ++ ++ k +i e l++ ++ + +k elsGG qRv ia l+ + l++aDePt++lD+++ +evLk l+++ +++ +il+ hDl
MMSYN1_0707 116 YKFFSILtRKQKITIFEKLDELNILDK-AFFK--VSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNK-TILVNIHDL 209
444443326666667777777776633.3333..3489*********************************************98765.688888*** PP
TIGR02770 187 gvvaeladevavmekGkivergtvkel 213
+ v + d v+ +++ +iv ++ k++
MMSYN1_0707 210 SLVKRYFDRVIAINNKQIVFDKKTKDI 236
*******************99988887 PP
>> TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.9 0.7 7.6e-28 5.4e-26 477 691 .. 4 229 .. 1 240 [. 0.79
Alignments for each domain:
== domain 1 score: 88.9 bits; conditional E-value: 7.6e-28
TIGR03796 477 kvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeil.fDgk..preeiprevlanslalvdqdivl.fegtvr 570
+el++++ y++ +++d++l++ +G+ vA++G+sG Gkst+ k++ +p++G++ fD + ++ +++ + + + + q l ++ +v
MMSYN1_0707 4 VIELKEISVQYNNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKvFDKDilKFNKKQKRLFISKIGFLTQTPNLiYTDNVY 101
69**********************************************************625544114556677788999****9987652788999 PP
TIGR03796 571 dnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegg....anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetE...kaidenlrrR 661
+n+ +++ ++++ + + +++i+ ++ e ++ + + + lsGGq+qR+eiA+ L+k+ +++ DE ts LD +t ++ +n+ +
MMSYN1_0707 102 NNII-RSTSKYKNNFYKFFSILTRKQKITIFEKLDELNILDKAffkvSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSievLKVLKNISKQ 198
9984.45555555555555555555555544444444444433222279*********************************99722345678999** PP
TIGR03796 662 gctciivaHRLsti.RdcdeiivlerGkvve 691
+ t+++ H Ls + R d++i +++ ++v
MMSYN1_0707 199 NKTILVNIHDLSLVkRYFDRVIAINNKQIVF 229
************995679******9999985 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.9 0.6 9.5e-28 6.8e-26 37 253 .. 18 235 .. 2 242 .. 0.80
Alignments for each domain:
== domain 1 score: 88.9 bits; conditional E-value: 9.5e-28
TIGR00955 37 ekellknvsGvaksGellAvlGsSGaGKtTLlnalafrse...kglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrr 131
+lk++ + +Gel+A++G+SG GK+TL++++ + + ++kv + +l +k +++ + +++ q +i t v+++++ ++ + k++
MMSYN1_0707 18 SDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRpvkGQVKVFDKDILKFNKKQKRLFISKIGFLTQTPNLIYTDNVYNNII-RSTSKYKNN 114
4557899999999********************99875431113566666678888888889999999****************9986.455566666 PP
TIGR00955 132 ltk...k.ekrer..veevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktvilti 223
+k +++++ + e l+el++ + a ++ lSgG+++R+ +a+ l++d l+++DEPTs LD ++ +v+kvLk+++++ kt+++ i
MMSYN1_0707 115 FYKffsIlTRKQKitIFEKLDELNILDKAFFKVS------ELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKTILVNI 206
6553321234443014566888888888777777......5********************************************************* PP
TIGR00955 224 HQPsselfelfdkiillaeGrvvylGspee 253
H s + + fd++i +++ ++v+ ++++
MMSYN1_0707 207 HDLS-LVKRYFDRVIAINNKQIVFDKKTKD 235
*975.6999***************988776 PP
>> TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 86.0 2.0 9e-27 6.4e-25 1 218 [. 5 236 .. 5 245 .. 0.83
Alignments for each domain:
== domain 1 score: 86.0 bits; conditional E-value: 9e-27
TIGR00968 1 ilianvskrfGdf..qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdr.....eiGfvfqhyalfkhltvrd 91
i+++++s ++ + +l+d++l++ +G+lva++GpsG Gkstl+++i +p +G++ + +d+ + + +++ +iGf+ q l+ v +
MMSYN1_0707 5 IELKEISVQYNNRsdLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKrlfisKIGFLTQTPNLIYTDNVYN 102
567788888876411689************************************************998776542555579***************** PP
TIGR00968 92 niafGleirkkd.....k.akikakveellelvqleklgdry..psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevk 181
ni k++ + + k+k++ + +l +l+ l++ + s+lsGGq+qrv +a+ l + +++l dep + ld k e+ + l+++ ++ k
MMSYN1_0707 103 NIIRSTSKYKNNfykffSiLTRKQKITIFEKLDELNILDKAFfkVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNK 200
*9887766655411111314567888888888899999888733589*********************************************988765 PP
TIGR00968 182 vttvfvthdqeealevadrivvlekGkieqvgsaeev 218
t ++ hd + dr++ +++ +i ++++
MMSYN1_0707 201 -TILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKDI 236
.555567*****************9999766666555 PP
>> TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.2 0.4 6.6e-14 4.7e-12 320 384 .. 2 68 .. 1 83 [. 0.90
2 ? 6.2 0.0 0.011 0.78 68 108 .. 83 123 .. 72 140 .. 0.86
3 ! 34.0 0.1 4.2e-11 3e-09 440 512 .. 146 221 .. 139 243 .. 0.56
Alignments for each domain:
== domain 1 score: 43.2 bits; conditional E-value: 6.6e-14
TIGR03719 320 dkvievenlskafgdk..lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGet 384
+kvie++++s +++++ l+++d+++++ +g +v +iGp G+Gkstlfk+i+++ +p +G++k+ +
MMSYN1_0707 2 NKVIELKEISVQYNNRsdLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDK 68
79************9855799*****************************************99776 PP
== domain 2 score: 6.2 bits; conditional E-value: 0.011
TIGR03719 68 ikvGyleqePkldeektvrenveegvaeikealdrfeeisa 108
k+G+l+q P+l + +v +n+ ++ ++ k+ + +f +i +
MMSYN1_0707 83 SKIGFLTQTPNLIYTDNVYNNIIRSTSKYKNNFYKFFSILT 123
58****************************99999987765 PP
== domain 3 score: 34.0 bits; conditional E-value: 4.2e-11
TIGR03719 440 kvgelsGGernrvhlakllkeggnvllldePtndld....vetlraleeallefaGcavvishdrwfldriathila 512
kv+elsGG+++rv++akll ++ +++l dePt +ld +e l+ l + + + +++v hd ++ r ++a
MMSYN1_0707 146 KVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDkktsIEVLKVLKN-ISKQNKTILVNIHDLSLVKRYFDRVIA 221
4555666666666666666666666666666666652222233333332.334444555555555555555555555 PP
>> TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.3 1.6 2.3e-26 1.6e-24 277 515 .. 2 236 .. 1 243 [. 0.86
Alignments for each domain:
== domain 1 score: 84.3 bits; conditional E-value: 2.3e-26
TIGR03269 277 ediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqey 374
+++i +k++s +y v+k +++l+++++e+ ++G sG Gk+tl ki++ l p +G+v+v d+ d+ k + +++ iG+l q
MMSYN1_0707 2 NKVIELKEISVQYNNRSDLVLK---DINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVF--DK--DILKFNKKQKRLFISKIGFLTQTP 92
5688889999999877777766...689***********************************98764..43..4444444456677788******** PP
TIGR03269 375 alyphrtvlenlteaiglelpdelakrkavivlk..avGfdeekakeildkl...pdelseGerhrvalaqvlikeprivildeptGtmdpitkvkva 467
+l +v +n+ + + ++ +++ k ++ + k ++ f++ + +ildk +els G++ rv +a++lik+ +++ dept +d t +v
MMSYN1_0707 93 NLIYTDNVYNNIIRSTS-KYKNNFYKFFSILTRKqkITIFEKLDELNILDKAffkVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVL 189
***9**********988.6889999999998865215779999999*****6333689***************************************9 PP
TIGR03269 468 esilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeei 515
+ lk + ++t ++ hd+ +v+ dr+ + + +iv ++++i
MMSYN1_0707 190 KV-LKNISKQNKTILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKDI 236
85.66677789*********************9999999987777776 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.0 0.0 4e-26 2.9e-24 3 201 .. 29 238 .. 27 245 .. 0.82
Alignments for each domain:
== domain 1 score: 84.0 bits; conditional E-value: 4e-26
TIGR03771 3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagks........srkgrreiGyvpqrhefawdfpidveqtvlsG....ragliGllrrpkk 88
+ +Gel++++Gp G Gk+tl++ i+ +++ kG+vkv k +r ++iG++ q ++ + +v++ ++ + + ++ ++
MMSYN1_0707 29 IFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDilkfnkkqKRLFISKIGFLTQTPNLIY--TDNVYNNIIRStskyKNNFYKFFSILTR 124
679*********************************97764222111003334569******999875..4556666665501114445556667788 PP
TIGR03771 89 adfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvll 186
++ +++ + l++ ++ + a v elsGGq+qrv +a+ l + +l+l dep + ld + +++++++++++++++il+ hdl+ drv+ +
MMSYN1_0707 125 KQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKTILVNIHDLSLVKRYFDRVIAI 222
99999*******************************************************9999*******************************988 PP
TIGR03771 187 n.grvvadgapdqlqd 201
n +++v d + +++++
MMSYN1_0707 223 NnKQIVFDKKTKDIKQ 238
6257888988888776 PP
>> TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 80.2 0.3 4.9e-25 3.5e-23 22 211 .. 20 211 .. 4 224 .. 0.74
Alignments for each domain:
== domain 1 score: 80.2 bits; conditional E-value: 4.9e-25
TIGR02324 22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaeplle.. 117
vlk+++l++ +Gelva++G+sG Gkstl+k + ++ +p g++ v +i+++ k ++r + ++ig+ +q i + + ++ +
MMSYN1_0707 20 LVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFD-KDILKFNKKQKRL--FI--SKIGFLTQTPNLIYTDNVYNNIIRSTSKyk 112
599*****************************************9988.4566455544443..33..479999998777766555544444333301 PP
TIGR02324 118 l......GvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhde 209
+ + + + + e l lni ++ + + sGG +qRv ia+ li+d ++L dePt+ Ld++++ v++++k++ ++ +++ +hd
MMSYN1_0707 113 NnfykffSILTRKQKITIFEKLDELNILDKAFFKV-SELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKTILVNIHDL 209
21111112333444455567788888888876555.799**********************************999*******988877777777765 PP
TIGR02324 210 ev 211
++
MMSYN1_0707 210 SL 211
44 PP
>> TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 81.9 0.1 1.5e-25 1e-23 9 234 .. 5 243 .. 2 247 .. 0.79
Alignments for each domain:
== domain 1 score: 81.9 bits; conditional E-value: 1.5e-25
TIGR03258 9 vvleslrvaygar..vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykr.....nlallvqnyalfphlkvee 99
+ l++++v+y+ r vl+d+ l+i Gel+a++G+sG Gk+tl++++ +++ G++ v d+d+ + ++ ++++l q l +v++
MMSYN1_0707 5 IELKEISVQYNNRsdLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKrlfisKIGFLTQTPNLIYTDNVYN 102
678999****976337*************************************************998776544122223456666666666666666 PP
TIGR03258 100 nvafGlrarkqsk...ali...aerva..dalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelp 189
n+ k + i +++++ + l +++ d a ++lsGGqqqrv +a+ l+ + +++l dep s ld + +v + lk++ ++
MMSYN1_0707 103 NIIRSTSKYKNNFykfFSIltrKQKITifEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQ-- 198
66544433333221111221112334422667778899****9***********************************************999886.. PP
TIGR03258 190 eltvlyvthdrdealvladkillmkeGslialGetralydapadr 234
+ t+l+ hd + d++ +++ +++ +t+++ + dr
MMSYN1_0707 199 NKTILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKDIKQWQLDR 243
89********99999999999999999999888888877766665 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 79.3 0.0 9.8e-25 7e-23 8 185 .. 14 207 .. 5 219 .. 0.75
Alignments for each domain:
== domain 1 score: 79.3 bits; conditional E-value: 9.8e-25
TIGR01189 8 veRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrde....laeellylgHldglKaeLsalEnL....... 94
++ + +l+++++++ Ge++++ Gp G+GK+tL +i+ l+p +G+v++ dk++ + +++ ++ +l+ ++ l + + +n+
MMSYN1_0707 14 YNNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKqkrlFISKIGFLTQTPNLIYTDNVYNNIirstsky 111
44445679********************************************9999765543300014567778887777665555555543333322 PP
TIGR01189 95 .....kfyaallqseqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllath 185
kf++ l+++++ t+ e l+++++ + + v++Ls Gq++R+ +a+Ll++ l + DEPt +lDk++ + ++l++ +++ ++l+ h
MMSYN1_0707 112 knnfyKFFSILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKTILVNIH 207
22112455555555555******************************************************9987777777776655555555444 PP
>> TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 79.9 9.0 6.9e-25 4.9e-23 2 210 .. 6 235 .. 5 246 .. 0.81
Alignments for each domain:
== domain 1 score: 79.9 bits; conditional E-value: 6.9e-25
TIGR03740 2 etknlskkfkkqa..vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeill.d......grewtrkdlkkiGsliesPal......yen 84
e k++s ++++++ v+++++l + + ++ +++Gp G Gkstl+k++ lr+ +G++++ d +++ r ++kiG l ++P l y+n
MMSYN1_0707 6 ELKEISVQYNNRSdlVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVfDkdilkfNKKQKRLFISKIGFLTQTPNLiytdnvYNN 103
67899999988754499***************************************9965242222234556677789***99999975322222777 PP
TIGR03740 85 l....ta.ren.lkvrtlllglpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGit 176
+ + ++n k ++l ++ +i e l+ +++ ++ k++++s G +qr+ ia l+++ +l++ dePt ld e+ +++k ++++ t
MMSYN1_0707 104 IirstSKyKNNfYKFFSILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKT 201
633221212332355666666677778888888888888889*************************************9999999************ PP
TIGR03740 177 vilsshilsevelladhiGiiseGklkyekkidk 210
+++ h ls v+ d + i++ ++ ++kk+++
MMSYN1_0707 202 ILVNIHDLSLVKRYFDRVIAINNKQIVFDKKTKD 235
****************************999875 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 76.2 0.1 9e-24 6.4e-22 4 219 .. 13 236 .. 10 248 .. 0.77
Alignments for each domain:
== domain 1 score: 76.2 bits; conditional E-value: 9e-24
TIGR02142 4 rlekrlgdfeLdvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivl.dgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGl 100
+ ++r d++l++ +++a+ G sG Gk++l ++i +rp +g++++ d +l+ +k+ l + ++g+ q +L +v +n+ +
MMSYN1_0707 13 QYNNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVfDKDILKFNKKQKRLFIS--KIGFLTQTPNLIYTDNVYNNIIRST 108
55555555556899999888*******************************98344566555554444444..7**********99999999986655 PP
TIGR02142 101 krarae.....erriseekvielLgiehL..leR...lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyv 188
++ + + + +++k++ + +++L l++ ++++LsGG +qRv i++ l+ + eL+l DeP + LD+k e+l L+++s++ k il
MMSYN1_0707 109 SKYKNNfykffSILTRKQKITIFEKLDELniLDKaffKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKT-ILVN 205
55554411111333456666655455543325552226899***********************************************99886.5556 PP
TIGR02142 189 sHsldevarladrvvvledGrvkaagkleev 219
H+l+ v+r drv+ +++ ++ k +++
MMSYN1_0707 206 IHDLSLVKRYFDRVIAINNKQIVFDKKTKDI 236
6****************99998777666666 PP
>> TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 71.9 0.5 1.6e-22 1.1e-20 39 252 .. 21 236 .. 11 246 .. 0.82
Alignments for each domain:
== domain 1 score: 71.9 bits; conditional E-value: 1.6e-22
TIGR03415 39 gvadasldveeGeilvlmGlsGsGkssllra.vnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGle... 132
+d++ld+ +Ge++ ++G sG Gks+l++ +n l pv +G+v+v d+ d+ k +++ +++l +++ + q l+ +v +n+
MMSYN1_0707 21 VLKDINLDIFQGELVAIIGPSGVGKSTLFKIiINSLRPV-KGQVKVFDK----DILKFNKK-QKRLFISKIGFLTQTPNLIYTDNVYNNIIRSTSkyk 112
56899************************9636999998.8*****998....57777765.5778899********************964432111 PP
TIGR03415 133 .....lsGvakaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdl 225
+ + ++++ + e+l+ +++ + a kv elsGG qqrv +a+ + + +++l deP s ld ++ +l+ +k +kti+ hdl
MMSYN1_0707 113 nnfykFFSILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLK-VLKNISKQNKTILVNIHDL 209
1111133444455555667999999********************************************877776655.455557789********** PP
TIGR03415 226 dealklGnriaimegGrivqlgtpeei 252
+ +r+ +++ +iv ++++i
MMSYN1_0707 210 SLVKRYFDRVIAINNKQIVFDKKTKDI 236
*99999999888888899988888877 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 71.6 2.1 1.8e-22 1.3e-20 334 549 .. 4 229 .. 1 242 [. 0.79
Alignments for each domain:
== domain 1 score: 71.6 bits; conditional E-value: 1.8e-22
TIGR01192 334 avefrdisfefanssqgv.rdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatv...fqdagllnr.sir 426
+e+++is ++ n s+ v +d+ +++ g+ vai+gp+g gk+tl ++ p +gq+ + di +++ r i+ + q l+ +
MMSYN1_0707 4 VIELKEISVQYNNRSDLVlKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRLFISKIgflTQTPNLIYTdNVY 101
589**********8886638*****************************************************9998776653215777776541455 PP
TIGR01192 427 enirlgredatdeevveaakaaa..asdfiekrlkgydt..lvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrk. 519
+ni + ++ +++ ++ + + i ++l++ + + + ++lsgg++qr+ ia+ ++k+ +++ de ts ld +t + v + + ++k
MMSYN1_0707 102 NNI-IRSTSKYKNNFYKFFSILTrkQKITIFEKLDELNIldKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKq 198
555.4555556667776555444004445567776655411456789********************************************9999762 PP
TIGR01192 520 nrttfiiahrlstv.readlvlfldqgrlie 549
n+t ++ h ls v r d v+ +++ +++
MMSYN1_0707 199 NKTILVNIHDLSLVkRYFDRVIAINNKQIVF 229
67777889****9945679999999888874 PP
>> TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 71.1 0.6 3.3e-22 2.3e-20 1 190 [. 22 224 .. 22 229 .. 0.81
Alignments for each domain:
== domain 1 score: 71.1 bits; conditional E-value: 3.3e-22
TIGR01184 1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpd..rmvvf......qnysllpwltvrenialavdavlrdlsk.. 88
lkd++l+i +ge++++ig sg gkstl+ +i +p +g v++ k+i + + r+ + q l+ v++ni + + +++ k
MMSYN1_0707 22 LKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKqkRLFISkigfltQTPNLIYTDNVYNNIIRSTSKYKNNFYKff 119
79***********************************************8866541155432222233666777788899999888887777654422 PP
TIGR01184 89 ....serreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeallls 182
+++ + e+++ +++ + a ++++lsgg +qrv ia+ l +l+l dep ld t e+ + l +i +++ t+l+ hd+
MMSYN1_0707 120 siltRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQN-KTILVNIHDLSLVKRYF 216
2221344445778898888888888899****************************************999888887766.5788888***9999999 PP
TIGR01184 183 drvvmltn 190
drv+ + n
MMSYN1_0707 217 DRVIAINN 224
99998876 PP
>> TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 69.2 2.5 7.8e-22 5.5e-20 3 234 .. 6 245 .. 4 248 .. 0.78
Alignments for each domain:
== domain 1 score: 69.2 bits; conditional E-value: 7.8e-22
TIGR02633 3 emkgivkkfggvk..aldnidlklraGeivslcGenGaGkstlmkvls.gvyphGtydGeil.fegeelkassi.rdterkGiviihqeltlvkelsv 95
e+k+i ++++ l++i+l + Ge+v++ G G Gkstl+k++ ++ p +G++ f+++ lk ++ + i + q l+ v
MMSYN1_0707 6 ELKEISVQYNNRSdlVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIInSLRP---VKGQVKvFDKDILKFNKKqKRLFISKIGFLTQTPNLIYTDNV 100
677777777665422689***************************97414555...577775266666765543033445678888899899988899 PP
TIGR02633 96 leniflGneitlkGglmdydamvlrakel.....lrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlk 188
+ni+ ++ ++ ++ r +++ l el++ ++ + vs+l +Gqqq veiak l k v l++ dep++ l +k +l++++++
MMSYN1_0707 101 YNNIIRSTSKYKNN-FYKFFSILTRKQKItifekLDELNILDKAFFK-VSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNIS 196
99998777666555.66666777777765222225556665555555.************************************999999******** PP
TIGR02633 189 akgvacvyishkleevkavsdtisvirdGqhv...atkdaealseddii 234
+++ + + h l vk d++ i + q v tkd+++ + d+ii
MMSYN1_0707 197 KQNKTILVNIHDLSLVKRYFDRVIAINNKQIVfdkKTKDIKQWQLDRII 245
***9999999******************999844457777777788887 PP
>> TIGR01978 sufC: FeS assembly ATPase SufC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 66.4 4.9 8.1e-21 5.8e-19 2 225 .. 6 229 .. 5 241 .. 0.72
Alignments for each domain:
== domain 1 score: 66.4 bits; conditional E-value: 8.1e-21
TIGR01978 2 kikdlhvsvedke..iLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlfla.....fqapeeipGv 92
++k+++v+ ++++ +Lk++nl++ +Ge++ai+Gp G GkstL k+++ + + ++G++k+ ++d+l+++ +++ lf++ +q+p+ i
MMSYN1_0707 6 ELKEISVQYNNRSdlVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIIN--SLRPVKGQVKVFDKDILKFNKKQK---RLFISkigflTQTPNLIYTD 98
5788888888865449*******************************96..67889************9987654...45665211114666666544 PP
TIGR01978 93 sn.keflrsalnavrkargeeeldllefekllkeklellelde....elleRsl..neGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkiv 183
++ ++++rs+ + ++ + +f + l++k ++ +++ ++l++ + sGG ++r ei +l++ + +l++ De s lD + v
MMSYN1_0707 99 NVyNNIIRSTSKYKN--------NFYKFFSILTRKQKITIFEKldelNILDKAFfkVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEV 188
431344555444444........3444444444444433332222233333332112468************************************** PP
TIGR01978 184 aegvnklreeekalliithyerllelikPdvvhvlldGrivk 225
++++++ +++k++l+ h l++ d v + + +iv
MMSYN1_0707 189 LKVLKNISKQNKTILVNIHDLSLVKRYF-DRVIAINNKQIVF 229
*******************999998754.6666666666665 PP
>> TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 62.7 0.0 1.1e-19 8.1e-18 3 222 .. 4 233 .. 2 245 .. 0.77
Alignments for each domain:
== domain 1 score: 62.7 bits; conditional E-value: 1.1e-19
TIGR02323 3 llevselsksygskkgcr...vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlr 96
++e++e+s +y ++ + +++ ++ Ge+++i+G sG Gkstl+k + + l + +G+v+ +++ +l++++ ++r l ++ G+++q p+ +
MMSYN1_0707 4 VIELKEISVQYNNRSDLVlkdINLdIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKD----ILKFNKKQKR-LFISKIGFLTQTPNLIY 96
6778899999999987654469999***********************************998877....9999999888.77788********8655 PP
TIGR02323 97 mevsaGanigerllavgarhy...Gkiraaak.....wlekvei.daarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llr 182
+ ni + y + +++k l++++i d+a k +++sGG qqr++ia+ l+ l++ ept l +l +l+
MMSYN1_0707 97 TD-NVYNNIIRSTSKYKNNFYkffSILTRKQKitifeKLDELNIlDKAFFKVSELSGGQQQRVEIAKLLIKDVELILAdEPTSNLdKKTSIEVLkVLK 193
44.445566544444444343111444444433322245666663666779***************************9******8677777885666 PP
TIGR02323 183 glvrelglaviivth.lavarllaqrllvmkqGrvvesGlt 222
++ + + ++++ h l++++ +r++ +++ ++v t
MMSYN1_0707 194 NISK-QNKTILVNIHdLSLVKRYFDRVIAINNKQIVFDKKT 233
6665.66667777777*****9********99999866555 PP
>> TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 61.7 0.1 2e-19 1.4e-17 1 188 [. 37 236 .. 37 240 .. 0.84
Alignments for each domain:
== domain 1 score: 61.7 bits; conditional E-value: 2e-19
TIGR01187 1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekr.....svnvvfqsyaLfPhmtveenvafgLkmrkvp........kaeikervkeaL 85
++GpsG Gk+tl++++ ++ +G++++ ++d+ + +++ +++ + q L v +n+ + k + + k + e L
MMSYN1_0707 37 IIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKrlfisKIGFLTQTPNLIYTDNVYNNIIRSTSKYKNNfykffsilTRKQKITIFEKL 134
68********************************9988765424444699999**************9765544333311111111334445567999 PP
TIGR01187 86 elvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqig 183
+ ++ + a k+s+lsGGq+qrv +a+ ++k +++L Dep s LDkk ++ + lk++ ++ t+++ hD + dr+ +++ +i+ ++
MMSYN1_0707 135 DELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQN-KTILVNIHDLSLVKRYFDRVIAINNKQIVFDK 231
999**********************************************************9996.5777778*****99*******99*99999998 PP
TIGR01187 184 epeei 188
++++i
MMSYN1_0707 232 KTKDI 236
88877 PP
>> TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 54.8 1.1 9.7e-18 6.9e-16 440 627 .. 20 229 .. 10 243 .. 0.77
Alignments for each domain:
== domain 1 score: 54.8 bits; conditional E-value: 9.7e-18
TIGR01271 440 pvlknislklekgqllavagstgsgkssllmmilgelepsegkik................hsgrisfspqvs.wimpgtikdniifglsydeyryts 520
vlk+i+l + +g+l+a+ g +g gks+l+ +i+ l p +g++k +i f +q++ i + +nii s + +
MMSYN1_0707 20 LVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKvfdkdilkfnkkqkrlFISKIGFLTQTPnLIYTDNVYNNIIRSTSKYKNNFYK 117
69****************************************9873333333222221111235688999997246778999****998855544444 PP
TIGR01271 521 vikacqleediallaekdktvlgeggi....tlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsklehlkka 614
++ i+++ + d++ + + lsggq+ r+ +a+ + kd +l l d p s ld t e+++ nkt ++ l +k+
MMSYN1_0707 118 FFSILTRKQKITIFEKLDELNILDKAFfkvsELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNISKQNKTILVNIHDLSLVKRY 215
555556677899999999999888764232369**************************************987666666788888888899999884 PP
TIGR01271 615 .dkilllhegscyf 627
d+++ + + + f
MMSYN1_0707 216 fDRVIAINNKQIVF 229
37887777766665 PP
>> TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.9 4.2 1.5e-16 1.1e-14 337 553 .. 5 233 .. 2 234 .. 0.77
Alignments for each domain:
== domain 1 score: 51.9 bits; conditional E-value: 1.5e-16
TIGR01194 337 lelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsav..........fady 424
+elk++ ++y++ + + l i+l i +Gelv i+G G Gkstl k+++ +p +G++ + + + + + + r + s + ++d
MMSYN1_0707 5 IELKEISVQYNN---RSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRLFISKIgfltqtpnliYTD- 98
788888888765...56799******************************************99888888888888887777654221111111444. PP
TIGR01194 425 ylfddlvqpdekkqa......sldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdl 516
++++++ k + s+ ++ + +e d +++ d ++ ++ls Gq++r+ + +++ ++l de +++ d + ++l ++
MMSYN1_0707 99 NVYNNIIRSTSKYKNnfykffSILTRKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTS-IEVLKVLKNI 195
468888887666555111111333344444445555667899**************************************9998654.556678999* PP
TIGR01194 517 krrGktilvishddryfe.ladrlikladGkvvkevkt 553
++ ktilv hd + dr+i + + ++v + kt
MMSYN1_0707 196 SKQNKTILVNIHDLSLVKrYFDRVIAINNKQIVFDKKT 233
*************765542569**********999886 PP
>> TIGR00956 3a01205: pleiotropic drug resistance family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.3 0.2 5.1e-16 3.7e-14 768 975 .. 11 221 .. 2 238 .. 0.75
Alignments for each domain:
== domain 1 score: 49.3 bits; conditional E-value: 5.1e-16
TIGR00956 768 evkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvL..aeRvttGvit..egdrlvngrkldssFqRsiGYvqqqDlHletstv.....rea 856
v++++ + +L++++ + G+l A++G sG Gk tL+ ++ + R G ++ + d+l +k + F +iG+ q + t v r +
MMSYN1_0707 11 SVQYNNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIinSLRPVKGQVKvfDKDILKFNKKQKRLFISKIGFLTQTPNLIYTDNVynniiRST 108
467777777899*****9********************99873345777887653256666666777788**********876666655510011444 PP
TIGR00956 857 LrfsAylRqp.kevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGq 953
++ + + + +++k k e kl el+ + A v+ L+ q +r+ i+ L+ k l+ DePts LD +t+ ++k+l++++++ +
MMSYN1_0707 109 SKYKNNFYKFfSILTRKQKITIFE---KLDELNILDKAFFKVS--ELSGGQQQRVEIAKLLI-KDVELILADEPTSNLDKKTSIEVLKVLKNISKQNK 200
555444433303345555555555...6778889999998876..69999*******97665.66688999*************************** PP
TIGR00956 954 ailCtiHqPsailleeFDrLLl 975
+il iH s + FDr++
MMSYN1_0707 201 TILVNIHDLSL-VKRYFDRVIA 221
*******9986.4677888775 PP
>> TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.3 1.9 3.6e-15 2.6e-13 1285 1495 .. 5 225 .. 2 230 .. 0.78
Alignments for each domain:
== domain 1 score: 46.3 bits; conditional E-value: 3.6e-15
TIGR00957 1285 vefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlr...fkltiipqdpvl.fsgsl 1376
+e+++ s++y + dlvl+d+n+ i ge v i+g +g gks+l ++ + +g++++ +i k ++ r +k+ + q p l ++ +
MMSYN1_0707 5 IELKEISVQYNNRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKFNKKQKRlfiSKIGFLTQTPNLiYTDNV 100
7999*********************************************************999999998888774446889999**966267778 PP
TIGR00957 1377 rmnld.pfsqysdeevwlalel..ahlkdfvsalpdkldf..ecaeggenlsvgqrqlvclarallrktkilvldeataavdletd.nliqstirt 1466
n+ s+y + + + + + + k + + d+l+ + +ls gq+q v +a+ l++ +++ de t+ +d +t ++++
MMSYN1_0707 101 YNNIIrSTSKYKN-NFYKFFSIltRKQKITIFEKLDELNIldKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSiEVLKVLKNI 195
7786515566655.555444430034444555666777642234456678**********************************983445555556 PP
TIGR00957 1467 qfedctvltiahrlntimdy.trvlvldkg 1495
++ t+l h l + y rv+ +++
MMSYN1_0707 196 SKQNKTILVNIHDLSLVKRYfDRVIAINNK 225
6778999999****9999874689887654 PP
>> TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.1 0.7 8.1e-15 5.7e-13 451 647 .. 3 217 .. 1 226 [. 0.67
Alignments for each domain:
== domain 1 score: 46.1 bits; conditional E-value: 8.1e-15
TIGR00954 451 ngikfeniplvtP.egdvlieeLsfevksGnhlLiiGPnGcGKsslfRil.gelWPvyg.......glltkpeegklFyvPqrPYmslgtlRdqiiYP 539
++i + +i + d +++++++++ +G+ + iiGP G GKs lf+i+ l Pv g l ++++k ++ + ++++ +iY
MMSYN1_0707 3 KVIELKEISVQYNnRSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIiNSLRPVKGqvkvfdkDILKFNKKQKRLFISKIGFLTQ---TPNLIYT 97
578888888877624678889***************************75278******55555444444444444444444444433...3457999 PP
TIGR00954 540 dssedfkerglsdk.....dLeqiLeevkLedllereggwdavqd...WkdvLsgGekqRiamARlfyHkPkfavLDEctsAv....svdvEdklyel 625
d++ + + r s + iL + + e+ ++++ +LsgG++qR+ +A+l+ + ++ DE ts + s++v + l +
MMSYN1_0707 98 DNVYNNIIRSTSKYknnfyKFFSILTRKQKITIFEKLDELNILDKaffKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLdkktSIEVLKVLKNI 195
9988888885544211111445666666666666666666555442214689*****************************86443377777777666 PP
TIGR00954 626 akevgitllsvshrksLwk.yHe 647
k+ + l+ + h sL+k y +
MMSYN1_0707 196 SKQNKTILVNI-HDLSLVKrYFD 217
66666666666.44444432655 PP
>> TIGR00630 uvra: excinuclease ABC subunit A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.3 0.1 7e-06 0.0005 621 654 .. 20 53 .. 2 75 .. 0.77
2 ! 28.6 1.1 1.4e-09 9.9e-08 772 896 .. 89 214 .. 83 224 .. 0.79
Alignments for each domain:
== domain 1 score: 16.3 bits; conditional E-value: 7e-06
TIGR00630 621 nnlkdidvsiplglltvitGvsgsGkstLindiL 654
lkdi+++i g+l++i G+sg GkstL + i+
MMSYN1_0707 20 LVLKDINLDIFQGELVAIIGPSGVGKSTLFKIII 53
3489999999999999999999999999976554 PP
== domain 2 score: 28.6 bits; conditional E-value: 1.4e-09
TIGR00630 772 retLevkykgkniadvLdmtveeakeffeavpkisrklellvdvGLgYiklGqpa....ttLsGGeaqrvkLakeLskrstgktlyilDePttGLhfd 865
+t ++ y + ++++ t + ++f++ ++ ++rk ++ + L+ +++ +a LsGG qrv +ak L k l + DePt L +
MMSYN1_0707 89 TQTPNLIYTDNVYNNIIRSTSKYKNNFYKFFSILTRKQKITIFEKLDELNILDKAffkvSELSGGQQQRVEIAKLLIKDV---ELILADEPTSNLDKK 183
5666667777777777777878888888888888887777777777777665543111168***************9876...58999********** PP
TIGR00630 866 DikkLlevlqrlvdkGntvvviehnldviks 896
++l+vl+++ ++ +t++v h+l ++k
MMSYN1_0707 184 TSIEVLKVLKNISKQNKTILVNIHDLSLVKR 214
****************************996 PP
>> TIGR01257 rim_protein: rim ABC transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.1 0.1 2.2e-11 1.6e-09 946 1135 .. 22 224 .. 5 234 .. 0.78
Alignments for each domain:
== domain 1 score: 33.1 bits; conditional E-value: 2.2e-11
TIGR01257 946 vdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdiet.nldavr...qslgmcpqhnilfhhltvaehil.fyaqlkgrswe 1036
+ +n+ +++ ++ a++g g gk+t + i+ l p g v v kdi n r +g+ q l++ v + i+ ++ k + ++
MMSYN1_0707 22 LKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVKGQVKVFDKDILKfNKKQKRlfiSKIGFLTQTPNLIYTDNVYNNIIrSTSKYKNNFYK 117
56689999****************************************954144333322257899999866666666666655244455554433 PP
TIGR01257 1037 .......eaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllky.rsgrtiimsthhmdead 1124
+ ++ + l++ + k + +lsgg q+++ +a ++ d +++ depts +d + + +l + + +ti++ h +
MMSYN1_0707 118 ffsiltrKQKITIFEKLDELNILDKAFFKVSELSGGQQQRVEIAKLLIKDVELILADEPTSNLDKKTSIEVLKVLKNIsKQNKTILVNIHDLSLVK 213
11111114556677789999999*****************************************9998888887766426789*********9999 PP
TIGR01257 1125 llgdriaiisq 1135
dr+ i++
MMSYN1_0707 214 RYFDRVIAINN 224
99999877765 PP
>> TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.9 0.1 5.6e-06 0.0004 118 183 .. 28 94 .. 8 132 .. 0.75
2 ? -0.2 0.2 2 1.4e+02 33 61 .. 214 244 .. 175 246 .. 0.62
Alignments for each domain:
== domain 1 score: 17.9 bits; conditional E-value: 5.6e-06
TIGR00157 118 eklkkrisvfaGqSGVGKSSLiNlldpe...vkqkvkevseklklGkhTTtsvelfhlqgGliiDtPGf 183
++++ ++ ++G+SGVGKS L + + vk +vk v +k k ++ +lf ++ G++ tP +
MMSYN1_0707 28 DIFQGELVAIIGPSGVGKSTLFKIIINSlrpVKGQVK-VFDKD-ILKFNKKQKRLFISKIGFLTQTPNL 94
679999999***********96665554111456677.65554.4467778889999999999999976 PP
== domain 2 score: -0.2 bits; conditional E-value: 2
TIGR00157 33 R..pivaNvdqivlvsslvePelslalldrl 61
R +v +++ +v+ + ++++++ldr+
MMSYN1_0707 214 RyfDRVIAINNKQIVFDKKTKDIKQWQLDRI 244
1554555555556667778888888888886 PP
>> TIGR03263 guanyl_kin: guanylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.5 0.1 0.00014 0.0099 2 25 .. 33 56 .. 32 68 .. 0.84
Alignments for each domain:
== domain 1 score: 13.5 bits; conditional E-value: 0.00014
TIGR03263 2 klivisgpsGvGKstlvkklleek 25
+l+ i gpsGvGKstl k ++++
MMSYN1_0707 33 ELVAIIGPSGVGKSTLFKIIINSL 56
68999************9998754 PP
>> TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.2 0.0 0.00018 0.013 1 24 [. 32 55 .. 32 68 .. 0.85
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 0.00018
TIGR02322 1 grlilvvGpsGaGKDtlldlarar 24
g+l++++GpsG GK tl++ +
MMSYN1_0707 32 GELVAIIGPSGVGKSTLFKIIINS 55
78***************9877655 PP
>> TIGR00750 lao: LAO/AO transport system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.0 0.00045 0.032 19 62 .. 17 60 .. 2 69 .. 0.82
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 0.00045
TIGR00750 19 eakellkrilpktGrahvvGltGvPGaGkstlveklieelrrrG 62
++ +lk i + + + v + G G+Gkstl + +i++lr
MMSYN1_0707 17 RSDLVLKDINLDIFQGELVAIIGPSGVGKSTLFKIIINSLRPVK 60
57778888999999999*******************99998654 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (249 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 452 (0.100713); expected 89.8 (0.02)
Passed bias filter: 204 (0.0454545); expected 89.8 (0.02)
Passed Vit filter: 96 (0.0213904); expected 4.5 (0.001)
Passed Fwd filter: 63 (0.0140374); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 63 [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 940.99
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0707 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0708 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0708.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0708/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0708 [L=487]
Description: high affinity transport system protein p37 3=Putative Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (487 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 258 (0.0574866); expected 89.8 (0.02)
Passed bias filter: 101 (0.0225045); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 3680.80
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0708 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0710 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0710.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0710/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0710 [L=287]
Description: Cof-like hydrolase 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-48 162.6 6.6 3.3e-48 162.5 6.6 1.0 1 TIGR00099 Cof-subfamily: Cof-like hydrolase
3.3e-27 93.9 0.7 4.4e-27 93.5 0.7 1.2 1 TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
4.9e-27 92.9 4.7 1.3e-15 55.5 0.4 2.0 2 TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfa
2.7e-26 90.7 9.6 3e-13 48.1 1.7 2.1 2 TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0
6.4e-09 33.5 0.2 1.8e-06 25.4 0.0 2.1 2 TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosp
1.9e-08 32.1 0.1 5.1e-05 20.9 0.0 2.2 2 TIGR01485 SPP_plant-cyano: sucrose phosphatase
1.5e-07 29.7 0.1 1.7e-06 26.3 0.0 2.2 2 TIGR02461 osmo_MPG_phos: mannosyl-3-phosphoglycerate phospha
1.9e-07 28.9 1.7 7.5e-06 23.6 0.1 2.5 2 TIGR00338 serB: phosphoserine phosphatase SerB
2.4e-07 28.9 1.3 0.012 13.6 0.2 2.8 3 TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
3.6e-07 26.9 0.4 0.0034 13.8 0.0 2.3 2 TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
3.7e-07 27.9 0.0 0.0012 16.3 0.0 2.2 2 TIGR02471 sucr_syn_bact_C: sucrose-phosphate synthase, sucro
6.8e-07 27.4 0.5 0.0019 16.1 0.0 3.3 2 TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydr
1.4e-06 26.3 0.0 2.7e-05 22.0 0.0 2.1 1 TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase
4.7e-06 23.7 3.7 0.00051 17.0 0.1 2.9 3 TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type AT
9.9e-06 21.3 0.2 0.028 9.8 0.0 2.1 2 TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specific
2e-05 22.6 2.4 0.0014 16.6 0.2 2.5 2 TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-ph
2.1e-05 20.4 0.8 0.00025 16.9 0.1 2.1 2 TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase
7.2e-05 19.6 1.8 0.00068 16.4 0.1 2.6 3 TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
0.00053 16.2 0.9 0.069 9.2 0.1 2.1 2 TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase
0.00097 17.9 1.9 0.36 9.6 1.9 2.9 1 TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
0.0013 16.3 0.0 0.0063 14.0 0.0 2.0 2 TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
0.0017 13.9 0.3 0.086 8.3 0.1 2.0 2 TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type AT
0.0022 14.2 0.8 0.36 6.8 0.1 2.2 2 TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-typ
0.0023 15.8 0.0 0.0044 14.9 0.0 1.6 1 TIGR00685 T6PP: trehalose-phosphatase
0.0025 14.7 2.1 0.32 7.7 0.1 2.6 3 TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
0.0035 14.8 0.4 0.0074 13.8 0.1 1.7 2 TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
0.0037 15.4 1.8 0.072 11.2 0.8 2.4 2 TIGR01685 MDP-1: magnesium-dependent phosphatase-1
0.0066 12.5 0.3 0.3 7.0 0.0 2.1 2 TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPas
0.0084 14.3 0.0 0.02 13.1 0.0 1.7 1 TIGR02726 phenyl_P_delta: phenylphosphate carboxylase, delta
0.0099 13.9 0.3 0.12 10.4 0.0 2.6 2 TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopen
------ inclusion threshold ------
0.015 13.0 0.5 0.16 9.6 0.0 2.5 3 TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hy
0.016 13.3 0.0 0.095 10.8 0.0 2.1 2 TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
0.018 10.8 5.2 0.022 10.5 0.2 2.4 3 TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, a
0.022 11.8 0.2 0.18 8.8 0.0 2.4 3 TIGR01686 FkbH: FkbH domain
Domain annotation for each model (and alignments):
>> TIGR00099 Cof-subfamily: Cof-like hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 162.5 6.6 2.5e-50 3.3e-48 1 256 [] 4 270 .. 4 270 .. 0.88
Alignments for each domain:
== domain 1 score: 162.5 bits; conditional E-value: 2.5e-50
TIGR00099 1 lifiDlDGTLlskdkeispetkealaklrekGikvvlaTGRsykevkeilkelgld....plivanGaavvdengk...eilykkpldldlveeilni 91
+i+iD+DGT ++ ++ i++ tk a++k++ kGik+v+aTGR ++ i k+l+l p+i+ nG+ v+ +++ +i y k+++++ v++i++i
MMSYN1_0710 4 IIAIDIDGTVYTRKNGIHELTKLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDLLntsiPFIGQNGGQVFSYEKNgsvKIRYTKNFTAQQVDQIFSI 101
69****************************************88888888887777677************9999999******************** PP
TIGR00099 92 lkklgldvilysd.dsiyfsknkneifeiekkklaepkkevvknqlledddlkillllleaedldkleealkkeelee.elsvvsssedsieitakgv 187
+k+++++ + y ++i++ ++ if + +kk a++ ++ k + ++++++ + ++e + +++++++ +++ +s v +++++iei + gv
MMSYN1_0710 102 IKQHKAHAFCYTLnENIAYKNKGISIFFWWMKKRAQRVVKIYKPNKALESQITKYICFGKKENMRQMRKKIEDLGFSAfSFSYVTNAKENIEINPIGV 199
*****77766666377777777778888888888888766555555556667777779**************96655414555*************** PP
TIGR00099 188 sKgsalqslaeklgislenviaiGDseNDieMleaagvgvamgnan.eelkaladyvtds.ndedgvakal 256
+Kg++l+++a++l++++e++ +GD+eND+e ++ ag gvam+n + + +k++ad +t d++gv++++
MMSYN1_0710 200 NKGYGLEYVAKELNVKPEEILFFGDGENDLEAIKFAGKGVAMKNTKlDIVKNAADDITSLtADQGGVGEYI 270
********************************************884678999*99999989999999987 PP
>> TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 93.5 0.7 3.4e-29 4.4e-27 1 221 [] 4 241 .. 4 241 .. 0.75
Alignments for each domain:
== domain 1 score: 93.5 bits; conditional E-value: 3.4e-29
TIGR01484 1 llffDlDgTLldpklelseelieaLerlrealgvkvvivTGRslaeikellkqlnl...elpliaengaliea..qgeklya.ea...lpedvaevll 89
++++D+DgT ++k ++e + a+++ + + g+k+vi+TGR+++ +++++kql l +p i +ng+ +++ +++++ + ++ ++++v+++
MMSYN1_0710 4 IIAIDIDGTVYTRKNGIHELTKLAIKKAKDK-GIKIVIATGRTITTTRFIAKQLDLlntSIPFIGQNGGQVFSyeKNGSVKIrYTknfTAQQVDQIFS 100
699***********888888888899*****.9*******************9988888999999999877642234444330335577777777777 PP
TIGR01484 90 seekelkeieailkslseryv.........gtfvedkalevaihysgqkeleqeldskllerlekigirkdleleailsrsn......alqkegetll 172
++++ ++ a+ ++l+e+ + + + +a+ v +y+ +++l+s +++++ + + +++++ +++ + + ++ +
MMSYN1_0710 101 IIKQH--KAHAFCYTLNENIAyknkgisifFWWMKKRAQRVVKIYK----PNKALESQITKYICFGKKENMRQMRKKIEDLGfsafsfSYVTNAKENI 192
76666..477777777766655566666665555556665555555....4666666666666666644444444444333366666666778***** PP
TIGR01484 173 evlpagvdKgkalqalleelnlkkeeilafGDsgNDeemlevaglavav 221
e+ p gv+Kg++l+++ +eln+k eeil+fGD++ND+e++++ag +va+
MMSYN1_0710 193 EINPIGVNKGYGLEYVAKELNVKPEEILFFGDGENDLEAIKFAGKGVAM 241
********************************************99998 PP
>> TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.4 0.4 8.6e-13 1.1e-10 1 77 [. 5 83 .. 5 109 .. 0.81
2 ! 55.5 0.4 1e-17 1.3e-15 66 207 .. 118 259 .. 112 276 .. 0.86
Alignments for each domain:
== domain 1 score: 39.4 bits; conditional E-value: 8.6e-13
TIGR01482 1 iasDlDgTlvdeeralnlsaleairkaesvyillvlvtGrsvkfakelaklig...tpdivilenGgeilyneglddkfl 77
ia+D+DgT+ +++ +++ ai+ka+ ++i++v++tGr+++ + +ak++ t+ + i +nGg ++ e + +
MMSYN1_0710 5 IAIDIDGTVYTRKNGIHELTKLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDllnTSIPFIGQNGGQVFSYEK-NGSVK 83
89*************************************************99999999********9975552.22222 PP
== domain 2 score: 55.5 bits; conditional E-value: 1e-17
TIGR01482 66 ilyneglddkflenleekwerdevvkktesfeelklqyeteqslvvvsegvdvdavrevikklglelkkv....ssGkdldilpkgvdKGkavkylke 159
i y++ ++ +f+ +++ + +vvk+ +++++l+ q+ + + +++ ++ ++r+ i+ lg + ++ ++++i p gv+KG +++y++
MMSYN1_0710 118 IAYKNKGISIFFWWMKKRAQ--RVVKIYKPNKALESQIT---KYICFGKKENMRQMRKKIEDLGFSAFSFsyvtNAKENIEINPIGVNKGYGLEYVAK 210
77888788888888888755..6899999999**99994...8889999999999********999887678889*********************** PP
TIGR01482 160 klgikpeeilviGDSeNDidlFevavfkvavanAq.eelkewadlvtes 207
l +kpeeil GD+eND+++ + a+ +va+ n + + +k++ad +t
MMSYN1_0710 211 ELNVKPEEILFFGDGENDLEAIKFAGKGVAMKNTKlDIVKNAADDITSL 259
*********************************9857789999988843 PP
>> TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0175-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.4 1.4 3.7e-15 4.9e-13 2 99 .. 3 104 .. 2 120 .. 0.80
2 ! 48.1 1.7 2.2e-15 3e-13 76 207 .. 127 261 .. 114 270 .. 0.80
Alignments for each domain:
== domain 1 score: 47.4 bits; conditional E-value: 3.7e-15
TIGR01487 2 klvavDiDgTltdknrlislraieairklekkGikvvlvtGnev...kfvealavligvsgavvaEnGgvvl.ykkedielankekeslldevkkkie 95
k++a+DiDgT+ ++ i++ ai+k++ kGik+v++tG+++ +f+ + l+++s ++++ nGg v+ y+k+ + + k+ +++v ++++
MMSYN1_0710 3 KIIAIDIDGTVYTRKNGIHELTKLAIKKAKDKGIKIVIATGRTItttRFIAKQLDLLNTSIPFIGQNGGQVFsYEKNGSVKIRYTKNFTAQQVDQIFS 100
89****************************************8722257788888999**********977537776666666667777776666666 PP
TIGR01487 96 lrdl 99
+ ++
MMSYN1_0710 101 IIKQ 104
6554 PP
== domain 2 score: 48.1 bits; conditional E-value: 2.2e-15
TIGR01487 76 ielankekeslldevkkkielrdllkneysraslvvdregkdvdevrkiakerglevva......sgyavhilkkgvdKgvgvkklkellGlkkeeva 167
i++ ++k+ +++v k+ ++++ l+ + +++++ ++ ++rk ++++g ++ ++ ++ i + gv+Kg g++ +++ l +k+ee++
MMSYN1_0710 127 IFFWWMKKR--AQRVVKIYKPNKALESQI--TKYICFGKKENMRQMRKKIEDLGFSAFSfsyvtnAKENIEINPIGVNKGYGLEYVAKELNVKPEEIL 220
444444443..567888888888888888..5667899999999**********987764333335667899999*********************** PP
TIGR01487 168 aiGDsenDldlFrvagfkvavanAd.delKeiaDlvtenes 207
GD+enDl++ + ag +va+ n + d +K++aD +t+
MMSYN1_0710 221 FFGDGENDLEAIKFAGKGVAMKNTKlDIVKNAADDITSLTA 261
***********************975899*******99654 PP
>> TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.4 0.0 1.4e-08 1.8e-06 1 75 [. 4 81 .. 4 122 .. 0.80
2 ! 6.4 0.0 0.0087 1.1 174 223 .. 197 244 .. 146 268 .. 0.75
Alignments for each domain:
== domain 1 score: 25.4 bits; conditional E-value: 1.4e-08
TIGR01486 1 liftDlDgtLldehsYdlgpAkevlerlqelgipvilctSKtaaEveelrkelgle...dpfivEnGaaiylprgsra 75
+i D+Dgt ++ + k +++++++ gi++++ t +t+ + + k+l+l pfi nG+ ++ ++
MMSYN1_0710 4 IIAIDIDGTVYTRKNGIHELTKLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDLLntsIPFIGQNGGQVFSYEKNGS 81
5788*******9888666778999******************************987789**********98777665 PP
== domain 2 score: 6.4 bits; conditional E-value: 0.0087
TIGR01486 174 aesdKGkAvnalkqlykekekaikvvglGDspnDlpllevvdlavvvkgk 223
+++KG ++ ++++++ k +++ GD+ nDl ++ + + v k+
MMSYN1_0710 197 IGVNKGYGLEYVAKELNVK--PEEILFFGDGENDLEAIKFAGKGVAMKNT 244
6789************998..6778899*******999988888877743 PP
>> TIGR01485 SPP_plant-cyano: sucrose phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.4 0.0 0.0013 0.17 6 65 .. 7 63 .. 3 141 .. 0.84
2 ! 20.9 0.0 3.9e-07 5.1e-05 146 217 .. 179 249 .. 144 263 .. 0.80
Alignments for each domain:
== domain 1 score: 9.4 bits; conditional E-value: 0.0013
TIGR01485 6 sdldetlvdrddgdnsallrlnallearrreds.llvystGrsyslykelrkqkpllePdi 65
d+d t+ ++ +++l +l ++ ++ + ++v +tGr+ ++ + + kq +ll+ i
MMSYN1_0710 7 IDIDGTVYT----RKNGIHELTKLAIKKAKDKGiKIVIATGRTITTTRFIAKQLDLLNTSI 63
577777663....3455777778777777777779*********************98776 PP
== domain 2 score: 20.9 bits; conditional E-value: 3.9e-07
TIGR01485 146 gldvkliyssGkdldilPqgadkgqalqylleklkiepsqtlvCGdsGndielfeisdvrGvivsnaqeell 217
+ + ++++i P g +kg l+y+ ++l+++p++ l Gd nd+e + +Gv ++n++ +++
MMSYN1_0710 179 AFSFSYVTNAKENIEINPIGVNKGYGLEYVAKELNVKPEEILFFGDGENDLEAIKF-AGKGVAMKNTKLDIV 249
44445566677899****************************************99.679***999987765 PP
>> TIGR02461 osmo_MPG_phos: mannosyl-3-phosphoglycerate phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.3 0.0 1.3e-08 1.7e-06 1 72 [. 4 79 .. 4 139 .. 0.87
2 ? 1.4 0.0 0.51 67 168 218 .. 183 233 .. 142 242 .. 0.73
Alignments for each domain:
== domain 1 score: 26.3 bits; conditional E-value: 1.3e-08
TIGR02461 1 viftDlDgTLld.etyeagpArevleelkdkglevvfvssKtraEqeeyreelgvkd...pfivEnGgaiyiPrgy 72
+i +D+DgT+ +++ + + +++++kdkg+++v + +t++ ++l++ + pfi nGg ++ +
MMSYN1_0710 4 IIAIDIDGTVYTrKNGIHELTKLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDLLNtsiPFIGQNGGQVFSYEKN 79
6889*******978888999999**********************9999999887542227*********976554 PP
== domain 2 score: 1.4 bits; conditional E-value: 0.51
TIGR02461 168 evtaggrfyevvg..gsdKGkAikvllelyklrlgaivtvglGDsenDlplle 218
+++ ++ ++ g +KG + ++++ + ++++i+ + GD+enDl ++
MMSYN1_0710 183 SYVTNAKENIEINpiGVNKGYGLEYVAKELNVKPEEILFF--GDGENDLEAIK 233
4555555544444457788888888888888877777665..79999987665 PP
>> TIGR00338 serB: phosphoserine phosphatase SerB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.1 0.1 0.055 7.2 93 124 .. 27 58 .. 14 107 .. 0.82
2 ! 23.6 0.1 5.7e-08 7.5e-06 153 204 .. 201 254 .. 189 261 .. 0.82
Alignments for each domain:
== domain 1 score: 4.1 bits; conditional E-value: 0.055
TIGR00338 93 lvkkLkekgykvaviSGgFdlvaeklkekLgl 124
+kk k+kg+k++++ G + + +++++L+l
MMSYN1_0710 27 AIKKAKDKGIKIVIATGRTITTTRFIAKQLDL 58
37899**********************99987 PP
== domain 2 score: 23.6 bits; conditional E-value: 5.7e-08
TIGR00338 153 kaktllkllekegislektvavGDGanDlsmikaAglgiafnak..pvlkekad 204
k+ l+ ++++ ++++e+++ GDG nDl++ik Ag g+a + ++k++ad
MMSYN1_0710 201 KGYGLEYVAKELNVKPEEILFFGDGENDLEAIKFAGKGVAMKNTklDIVKNAAD 254
8889999*********************************96541235666665 PP
>> TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.6 0.2 9.4e-05 0.012 1 57 [. 3 50 .. 3 74 .. 0.76
2 ? -1.8 0.0 5.6 7.3e+02 72 105 .. 121 155 .. 111 162 .. 0.66
3 ! 13.4 0.0 0.00011 0.015 94 134 .. 200 238 .. 150 244 .. 0.69
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 9.4e-05
TIGR01662 1 klvvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsgigrgk 57
k++ +D+Dgt t ++ + + ++ a++++k++G+k+vi+t+++ i++
MMSYN1_0710 3 KIIAIDIDGTVY------TRKNGI--HELTKLAIKKAKDKGIKIVIATGRT-ITTTR 50
8999******99......222222..3566789****************99.76644 PP
== domain 2 score: -1.8 bits; conditional E-value: 5.6
TIGR01662 72 eelgvpidvliacphs..kceyrKpktgmleealkr 105
+++g+ i+++++ +++ ++ Kp ++le+ +++
MMSYN1_0710 121 KNKGISIFFWWMKKRAqrVVKIYKP-NKALESQITK 155
5678888888888833345566777.4555555554 PP
== domain 3 score: 13.4 bits; conditional E-value: 0.00011
TIGR01662 94 pktgmleealkrlneidakesvvvGDavltDleaakrvGla 134
+k + le++ k+ln ++++e+++ GD +Dlea+k +G
MMSYN1_0710 200 NKGYGLEYVAKELN-VKPEEILFFGD-GENDLEAIKFAGKG 238
4668899******8.***********.88*******99975 PP
>> TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.0 0.1 0.00019 0.025 329 366 .. 22 59 .. 12 65 .. 0.88
2 ! 13.8 0.0 2.5e-05 0.0034 385 411 .. 216 242 .. 207 259 .. 0.82
Alignments for each domain:
== domain 1 score: 11.0 bits; conditional E-value: 0.00019
TIGR01494 329 edvketieelkkagikvimlTGDnvetAkaiakelglf 366
e +k +i++ k+ gik+++ TG + t++ iak+l l+
MMSYN1_0710 22 ELTKLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDLL 59
668889****************************9876 PP
== domain 2 score: 13.8 bits; conditional E-value: 2.5e-05
TIGR01494 385 gevvamiGDGvNDapALkaAdVGiais 411
e +++ GDG ND A+k A G+a++
MMSYN1_0710 216 PEEILFFGDGENDLEAIKFAGKGVAMK 242
567899********************8 PP
>> TIGR02471 sucr_syn_bact_C: sucrose-phosphate synthase, sucrose phosphatase-like domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.8 0.1 0.0009 0.12 1 67 [. 4 73 .. 4 149 .. 0.79
2 ! 16.3 0.0 9.5e-06 0.0012 124 203 .. 162 244 .. 136 255 .. 0.77
Alignments for each domain:
== domain 1 score: 9.8 bits; conditional E-value: 0.0009
TIGR02471 1 viltdldntLlgddegLaefvellrtagkdvs..fGiatGrslesalkllkklklPsPdv.liaavGtei 67
+i d+d t+ ++g+ e+ +l +++kd + + iatGr++ + + k+l l + + +i + G ++
MMSYN1_0710 4 IIAIDIDGTVYTRKNGIHELTKLAIKKAKDKGikIVIATGRTITTTRFIAKQLDLLNTSIpFIGQNGGQV 73
6789*****************99877777666115789******99999999988776664455555555 PP
== domain 2 score: 16.3 bits; conditional E-value: 9.5e-06
TIGR02471 124 epslkqirkrLrqqelav...kvilsleafLdvlPlraskelalrylslrwglpleqlLvagdsgndeellrGdtlgvvvgnh 203
+ +++q+rk++ + + ++ + + ++ +++ P+ k++ l y++ +++++e++L gd +nd e ++ +gv + n
MMSYN1_0710 162 KENMRQMRKKIEDLGFSAfsfSYVTNAKENIEINPIGVNKGYGLEYVAKELNVKPEEILFFGDGENDLEAIKFAGKGVAMKNT 244
555556666555554443111455667788999***************************************99999988774 PP
>> TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.6 0.0 0.025 3.4 81 118 .. 27 63 .. 19 106 .. 0.81
2 ! 16.1 0.0 1.5e-05 0.0019 133 175 .. 189 233 .. 167 235 .. 0.81
Alignments for each domain:
== domain 1 score: 5.6 bits; conditional E-value: 0.025
TIGR01488 81 likwlkekGiklvivSggldflveklaeklgidkvfan 118
+ik++k+kGik+vi +g + + +a +l++ + ++
MMSYN1_0710 27 AIKKAKDKGIKIVIATGRTITTTRFIAKQLDLLN-TSI 63
7999*************99999999999998765.444 PP
== domain 2 score: 16.1 bits; conditional E-value: 1.5e-05
TIGR01488 133 eg..evnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlpllk 175
++ e np+g +Kg+ l+ + +e + + +ei ++GD++nDl+++k
MMSYN1_0710 189 KEniEINPIGVNKGYGLEYVAKELNVKPEEILFFGDGENDLEAIK 233
3322489***********99999999999**************98 PP
>> TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.0 0.0 2e-07 2.7e-05 2 206 .. 5 232 .. 4 242 .. 0.66
Alignments for each domain:
== domain 1 score: 22.0 bits; conditional E-value: 2e-07
TIGR02463 2 vvsDlDGtLld.hsydwqpAaetlkrLqeagvPvilctsktaaEvealrkelglq...dPyivEnGaviqleelkreeeprlilGksyeilrlkLekl 95
+ D+DGt+ ++ + + +k+ +++g+ ++++t +t + + k+l+l P+i nG+ + e+ +++ r + + ++ + +
MMSYN1_0710 5 IAIDIDGTVYTrKNGIHELTKLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDLLntsIPFIGQNGGQVFSYEKNGSVKIRYTKNFTAQQVDQIFSII 102
678*******9555556778889***************************999843468**********99999998886666666666666666666 PP
TIGR02463 96 seelsfkl.ktld.dlsdae..iaeltGLsgeql.........elaqdreasvpllndsdereerltallaelgla......lvrGnRlsHllgaeas 174
++++ + + tl+ ++ +++ i+ + ++++ ++a + ++ + ++e++ ++++ +++lg + +++ + + + ++
MMSYN1_0710 103 KQHKAHAFcYTLNeNIAYKNkgISIFFWWMKKRAqrvvkiykpNKALESQITKYICFGKKENMRQMRKKIEDLGFSafsfsyVTNAKENIEINPIGVN 200
65554444224431455443113333222222220001001002333333444444488999999999999999872222222334445566667889 PP
TIGR02463 175 kgkavnalkkalnekdvkvlgLGDspnDlpLL 206
kg + + k+ln k ++l GD++nDl +
MMSYN1_0710 201 KGYGLEYVAKELNVKPEEILFFGDGENDLEAI 232
99999999999999999999999999998765 PP
>> TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.5 0.2 0.011 1.5 388 426 .. 20 58 .. 11 64 .. 0.85
2 ? 0.7 0.0 0.32 42 117 157 .. 69 107 .. 61 113 .. 0.82
3 ! 17.0 0.1 3.8e-06 0.00051 445 490 .. 210 256 .. 205 266 .. 0.83
Alignments for each domain:
== domain 1 score: 5.5 bits; conditional E-value: 0.011
TIGR01525 388 lrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgi 426
+ + +k ai++ k kgi++v+ tG + ++++ +Ak+l +
MMSYN1_0710 20 IHELTKLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDL 58
6667899*****************************986 PP
== domain 2 score: 0.7 bits; conditional E-value: 0.32
TIGR01525 117 egdeViaGtvnlegsleikvtkvgedstlaqivklveeaqe 157
+g +V+ + ++gs++i+ tk+ ++ ++ qi +++++ ++
MMSYN1_0710 69 NGGQVF--SYEKNGSVKIRYTKNFTAQQVDQIFSIIKQHKA 107
555665..57899**********************999765 PP
== domain 3 score: 17.0 bits; conditional E-value: 3.8e-06
TIGR01525 445 klqeeegkkvamvGDGiNDApALaaAdvGiamg.sgsdvaieaADvv 490
k + + +++++ GDG ND A++ A G+am + d+ ++aAD +
MMSYN1_0710 210 KELNVKPEEILFFGDGENDLEAIKFAGKGVAMKnTKLDIVKNAADDI 256
444344447************************9**********955 PP
>> TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.6 0.0 0.00025 0.033 656 738 .. 17 99 .. 13 144 .. 0.71
2 ! 9.8 0.0 0.00022 0.028 804 830 .. 218 244 .. 207 261 .. 0.88
Alignments for each domain:
== domain 1 score: 9.6 bits; conditional E-value: 0.00025
TIGR01657 656 enklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekkktlilaeaeep.ekgksaqikfeskdekiastkveqpv 738
+n + + tk ik+ k+ i++v+ tG + T+ +a+++++++ + i ++ + +k+ ++k++++++ ++ ++v q +
MMSYN1_0710 17 KNGIHELTKLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDLLNTSIPFIGQNGGQVfSYEKNGSVKIRYTKN-FTAQQVDQIF 99
57788899999***********************************888888876652346666788888777.4444444433 PP
== domain 2 score: 9.8 bits; conditional E-value: 0.00022
TIGR01657 804 tvlmcGDGaNDcgALkqAdvGisLsea 830
+l+ GDG ND A+k A G+++ +
MMSYN1_0710 218 EILFFGDGENDLEAIKFAGKGVAMKNT 244
57999******************9875 PP
>> TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.8 0.2 0.022 2.9 34 65 .. 25 56 .. 3 99 .. 0.79
2 ! 16.6 0.2 1.1e-05 0.0014 82 143 .. 206 268 .. 188 278 .. 0.84
Alignments for each domain:
== domain 1 score: 5.8 bits; conditional E-value: 0.022
TIGR01670 34 GigiklllklgikvaiitGrdaklvekrlkel 65
++ik ++ gik+ i tGr ++ +k+l
MMSYN1_0710 25 KLAIKKAKDKGIKIVIATGRTITTTRFIAKQL 56
46999999************987665555555 PP
== domain 2 score: 16.6 bits; conditional E-value: 1.1e-05
TIGR01670 82 eeileklalkdeevafiGddlvdkevlekvGlsvavkdaheelrk.vadyvtrkkGGkgavre 143
e + + l++k+ee+ f Gd +d e ++ G va+k+++ ++ k ad +t+ +g v e
MMSYN1_0710 206 EYVAKELNVKPEEILFFGDGENDLEAIKFAGKGVAMKNTKLDIVKnAADDITSLTADQGGVGE 268
667889*********************************988765167899998888877766 PP
>> TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.8 0.0 0.066 8.7 506 540 .. 25 59 .. 18 81 .. 0.88
2 ! 16.9 0.1 1.9e-06 0.00025 586 627 .. 215 256 .. 206 265 .. 0.84
Alignments for each domain:
== domain 1 score: 1.8 bits; conditional E-value: 0.066
TIGR01522 506 keaveklltgGvrvimitGdseetavsiarrlGla 540
k a++k G+++++ tG + +t+ ia++l l
MMSYN1_0710 25 KLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDLL 59
679999999**********************9875 PP
== domain 2 score: 16.9 bits; conditional E-value: 1.9e-06
TIGR01522 586 rGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmi 627
+ + + GdG nd a+k a Gvam +t d++k+aad i
MMSYN1_0710 215 KPEEILFFGDGENDLEAIKFAGKGVAMKNTKLDIVKNAADDI 256
55666778********************************87 PP
>> TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.4 0.0 0.64 84 324 363 .. 18 56 .. 8 58 .. 0.83
2 ? 0.4 0.0 0.35 46 111 152 .. 68 107 .. 58 110 .. 0.80
3 ! 16.4 0.1 5.1e-06 0.00068 384 423 .. 217 256 .. 209 264 .. 0.90
Alignments for each domain:
== domain 1 score: -0.4 bits; conditional E-value: 0.64
TIGR01512 324 DevredaaeaiaeLkklgvkklvlltGDreaaaekvaeel 363
+ + e ++ ai++ k +g+ k+v+ tG +++ +a++l
MMSYN1_0710 18 NGIHELTKLAIKKAKDKGI-KIVIATGRTITTTRFIAKQL 56
5567778889999999996.78*****9999999999986 PP
== domain 2 score: 0.4 bits; conditional E-value: 0.35
TIGR01512 111 akgdevlaGainldgvlkievtkeaedstiakivklveeaqs 152
++g +v++ ++g++ki+ tk+ + ++++i +++++ ++
MMSYN1_0710 68 QNGGQVFS--YEKNGSVKIRYTKNFTAQQVDQIFSIIKQHKA 107
56666665..456789*********************99875 PP
== domain 3 score: 16.4 bits; conditional E-value: 5.1e-06
TIGR01512 384 kevamvGDGiNDapaLaaAdvgiamGasgsdvaletADvv 423
+e+++ GDG ND +a++ A g+am ++ d++ ++AD +
MMSYN1_0710 217 EEILFFGDGENDLEAIKFAGKGVAMKNTKLDIVKNAADDI 256
48999********************************976 PP
>> TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.7 0.1 0.006 0.79 550 587 .. 25 62 .. 9 74 .. 0.87
2 ! 9.2 0.1 0.00052 0.069 631 666 .. 221 256 .. 210 265 .. 0.86
Alignments for each domain:
== domain 1 score: 5.7 bits; conditional E-value: 0.006
TIGR01517 550 reavkkcqraGitvRmvtGDnlstakaiarecgiltag 587
+ a+kk + Gi + + tG ++t + ia++ +l+++
MMSYN1_0710 25 KLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDLLNTS 62
56899***************************999876 PP
== domain 2 score: 9.2 bits; conditional E-value: 0.00052
TIGR01517 631 vtGDGtnDaPaLkladvGfamgiaGtevakeasDii 666
GDG nD a+k a G+am+ + ++ k+a+D i
MMSYN1_0710 221 FFGDGENDLEAIKFAGKGVAMKNTKLDIVKNAADDI 256
56****************************999854 PP
>> TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.6 1.9 0.0027 0.36 1 121 [. 3 225 .. 3 236 .. 0.50
Alignments for each domain:
== domain 1 score: 9.6 bits; conditional E-value: 0.0027
TIGR01681 1 kvivfDlDnTLwtdeed..........vvkedpiedieltevtikeirdvLqelkknGvllalaSknddeevakellkikedYfd............. 75
k+i+ D D+T++t ++ k+++i+ + t ti + r + ++l+ ++ + +
MMSYN1_0710 3 KIIAIDIDGTVYTRKNGiheltklaikKAKDKGIKIVIATGRTITTTRFIAKQLDLLNTSIPFI--------------------Gqnggqvfsyekng 80
6789999999999976644444444332222223333333222222222222333333333333....................03333333333333 PP
TIGR01681 76 .................................................................................................. 75
MMSYN1_0710 81 svkirytknftaqqvdqifsiikqhkahafcytlneniayknkgisiffwwmkkraqrvvkiykpnkalesqitkyicfgkkenmrqmrkkiedlgfs 178
33333333555555555555555555556666666666666666666666666666666666666666666666666666666666666666666666 PP
TIGR01681 76 ....vilpkaelfldltigkrlpKskrlveilkklnsvlklksilfvDDl 121
+++++a+ + +++ + +K l++++k+ln +k+++ilf+ D
MMSYN1_0710 179 afsfSYVTNAKENIEINPI-GVNKGYGLEYVAKELN--VKPEEILFFGDG 225
6666333344444444444.2367777777777777..777777777665 PP
>> TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.6 0.0 1.4 1.9e+02 3 24 .. 7 28 .. 5 69 .. 0.57
2 ! 14.0 0.0 4.8e-05 0.0063 147 181 .. 205 239 .. 202 255 .. 0.90
Alignments for each domain:
== domain 1 score: -0.6 bits; conditional E-value: 1.4
TIGR01449 3 fDLDGtLvdsAPdlaaavnkaL 24
+D+DGt+ ++++ a+
MMSYN1_0710 7 IDIDGTVYTRKNGIHELTKLAI 28
6666666655555555444333 PP
== domain 2 score: 14.0 bits; conditional E-value: 4.8e-05
TIGR01449 147 LllaaerlgvepaqmvyvGDsevDiaaArAAGlps 181
L +a+ l+v+p ++++ GD e+D++a + AG +
MMSYN1_0710 205 LEYVAKELNVKPEEILFFGDGENDLEAIKFAGKGV 239
6789***************************9765 PP
>> TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.7 0.0 0.016 2.1 597 635 .. 24 62 .. 17 77 .. 0.90
2 ! 8.3 0.1 0.00065 0.086 696 731 .. 221 256 .. 211 264 .. 0.87
Alignments for each domain:
== domain 1 score: 3.7 bits; conditional E-value: 0.016
TIGR01523 597 skgavkkfhragirvhmltgdfvetakaiarevgilptn 635
+k a+kk + gi++ + tg + t++ ia+++ +l t+
MMSYN1_0710 24 TKLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDLLNTS 62
7889****************************9999885 PP
== domain 2 score: 8.3 bits; conditional E-value: 0.00065
TIGR01523 696 mtgdgvndspslkqanvgiamgingsdvakeasdiv 731
+ gdg nd ++k a g+am d+ k+a+d +
MMSYN1_0710 221 FFGDGENDLEAIKFAGKGVAMKNTKLDIVKNAADDI 256
579****************************99854 PP
>> TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 6.8 0.1 0.0028 0.36 447 483 .. 24 60 .. 19 106 .. 0.91
2 ! 6.0 0.1 0.0049 0.65 539 571 .. 221 254 .. 207 262 .. 0.82
Alignments for each domain:
== domain 1 score: 6.8 bits; conditional E-value: 0.0028
TIGR01647 447 tketierakelgvevkmvtGDhlaiaketarrlglgt 483
tk +i++ak+ g+++ + tG ++ ++ +a++l+l +
MMSYN1_0710 24 TKLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDLLN 60
899******************************9854 PP
== domain 2 score: 6.0 bits; conditional E-value: 0.0049
TIGR01647 539 mtGDGvnDaPaLkkAdvGiAvagA.tDAArsaaD 571
GDG nD a+k A G+A+++ D + aaD
MMSYN1_0710 221 FFGDGENDLEAIKFAGKGVAMKNTkLDIVKNAAD 254
57*******************9873599999987 PP
>> TIGR00685 T6PP: trehalose-phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.9 0.0 3.3e-05 0.0044 153 202 .. 184 229 .. 136 259 .. 0.82
Alignments for each domain:
== domain 1 score: 14.9 bits; conditional E-value: 3.3e-05
TIGR00685 153 kvqdGkavvElkPrdvnKGeivkklleeadvsgisakdvvvyLGDDlTDe 202
v++ k+++E+ P +vnKG ++ + +e +v++ + +++ GD D
MMSYN1_0710 184 YVTNAKENIEINPIGVNKGYGLEYVAKELNVKP-EE---ILFFGDGENDL 229
4899****************************8.44...79999976665 PP
>> TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.8 0.2 0.0096 1.3 366 407 .. 16 57 .. 9 63 .. 0.87
2 ? -1.4 0.0 1.4 1.8e+02 136 177 .. 68 107 .. 58 119 .. 0.79
3 ! 7.7 0.1 0.0024 0.32 426 467 .. 214 256 .. 205 266 .. 0.84
Alignments for each domain:
== domain 1 score: 5.8 bits; conditional E-value: 0.0096
TIGR01511 366 ledelkpeakevieaLkkrgievvlltGDnekaakavAkelg 407
++ +++ +k +i++ k +gi++v+ tG ++ + +Ak+l
MMSYN1_0710 16 RKNGIHELTKLAIKKAKDKGIKIVIATGRTITTTRFIAKQLD 57
556677788999***************************986 PP
== domain 2 score: -1.4 bits; conditional E-value: 1.4
TIGR01511 136 kvgdeviaGtvngegsllvkvtkvgedtllaqivklveeAqq 177
++g +v+ + ++gs+ ++ tk+ + + qi +++++ ++
MMSYN1_0710 68 QNGGQVF--SYEKNGSVKIRYTKNFTAQQVDQIFSIIKQHKA 107
5666666..467889999999999999999999999998654 PP
== domain 3 score: 7.7 bits; conditional E-value: 0.0024
TIGR01511 426 lqekkvamvGDGiNDapaLaaadvgiaigag.tdvaieaadvv 467
++ +++++ GDG ND a+ a g+a+ + d+ ++aad +
MMSYN1_0710 214 VKPEEILFFGDGENDLEAIKFAGKGVAMKNTkLDIVKNAADDI 256
67899**********************9765269999999855 PP
>> TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.8 0.1 5.6e-05 0.0074 1 58 [. 2 60 .. 2 97 .. 0.89
2 ? -2.2 0.0 4.1 5.4e+02 182 204 .. 203 225 .. 181 246 .. 0.70
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 5.6e-05
TIGR01457 1 ykGylidldGtlykGkekieeavef.vkelkkrdvpylfvtnnstrtpesvaellasld 58
yk id+dGt+y k+ i+e +++ +k+ k++++ + t + t + +a++l l+
MMSYN1_0710 2 YKIIAIDIDGTVYTRKNGIHELTKLaIKKAKDKGIKIVIATGRTITTTRFIAKQLDLLN 60
67778**************998775489****************999999999987766 PP
== domain 2 score: -2.2 bits; conditional E-value: 4.1
TIGR01457 182 iilekalkrlGtekeetllvGdn 204
le k+l ++ ee+l+ Gd
MMSYN1_0710 203 YGLEYVAKELNVKPEEILFFGDG 225
44666778888888888888874 PP
>> TIGR01685 MDP-1: magnesium-dependent phosphatase-1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.2 0.8 0.00054 0.072 1 110 [. 1 107 [. 1 165 [. 0.73
2 ? 3.0 0.0 0.18 24 119 148 .. 207 233 .. 184 251 .. 0.77
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 0.00054
TIGR01685 1 lpkvivfDlDgTlWdhyn.isllkg.PfKpvksensiiidkeGaeltlikevrdvLqslkdagvilaiasrndvpevareiLkifkikyaGkvvPlae 96
+ k+i++D+DgT+++ +n i l + K+ k++ i G +t + + + L l+++ +++ ++e + ki+y+ + +
MMSYN1_0710 1 MYKIIAIDIDGTVYTRKNgIHELTKlAIKKAKDKGIKIVIATGRTITTTRFIAKQLDLLNTSIPFIGQNGGQ---VFSYEKNGSVKIRYTKNFTA--Q 93
569************9874677888899**99666689999***9999999998888888877777766555...45577778888887766553..2 PP
TIGR01685 97 lFdelvekekpsKa 110
d++ ++ k +Ka
MMSYN1_0710 94 QVDQIFSIIKQHKA 107
23333333333344 PP
== domain 2 score: 3.0 bits; conditional E-value: 0.18
TIGR01685 119 klkkkspvelkpkeilfiDdrsvnvrevek 148
+ k+ ++kp+eilf+ d ++++ + k
MMSYN1_0710 207 YVAKEL--NVKPEEILFFGDGENDLEAI-K 233
555544..89********9999888444.3 PP
>> TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.0 0.0 0.0023 0.3 472 508 .. 25 61 .. 9 99 .. 0.86
2 ? 3.7 0.0 0.022 3 549 582 .. 222 256 .. 211 263 .. 0.84
Alignments for each domain:
== domain 1 score: 7.0 bits; conditional E-value: 0.0023
TIGR01116 472 adaiekcreaGirvivitGdnketaeaiarriGilss 508
+ ai+k ++ Gi++++ tG + t++ ia+++ +l++
MMSYN1_0710 25 KLAIKKAKDKGIKIVIATGRTITTTRFIAKQLDLLNT 61
569****************************999874 PP
== domain 2 score: 3.7 bits; conditional E-value: 0.022
TIGR01116 549 tGdGvndaPalkkadiGiamG.sGtevakeasdlv 582
GdG nd a+k a G+am + ++ k+a+d +
MMSYN1_0710 222 FGDGENDLEAIKFAGKGVAMKnTKLDIVKNAADDI 256
69******************724568999998855 PP
>> TIGR02726 phenyl_P_delta: phenylphosphate carboxylase, delta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.1 0.0 0.00015 0.02 90 149 .. 208 268 .. 183 279 .. 0.84
Alignments for each domain:
== domain 1 score: 13.1 bits; conditional E-value: 0.00015
TIGR02726 90 mleemnisdaevcyvgddlvdlsmmkrvglavavgdavad.vkevaayvttargghgavre 149
+ +e+n+ e+ + gd dl +k g va+ ++ d vk++a +t+ +g v e
MMSYN1_0710 208 VAKELNVKPEEILFFGDGENDLEAIKFAGKGVAMKNTKLDiVKNAADDITSLTADQGGVGE 268
5689*******************************99888468888888888877777765 PP
>> TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.1 0.1 1.3 1.7e+02 6 90 .. 7 37 .. 3 62 .. 0.58
2 ! 10.4 0.0 0.0009 0.12 139 181 .. 190 235 .. 177 243 .. 0.76
Alignments for each domain:
== domain 1 score: 0.1 bits; conditional E-value: 1.3
TIGR01489 6 sDFDgTIieqdsddwivdkfgkkeakrllkeslskdlsiefmdrlmkvLsseglkedeikevlksvpidegvkefiefikekeid 90
D DgT+ + + + ++k++ k+ak++ i+
MMSYN1_0710 7 IDIDGTVYTRKNGIHELTKLAIKKAKDKG------------------------------------------------------IK 37
56666666666655555555555555543......................................................33 PP
== domain 2 score: 10.4 bits; conditional E-value: 0.0009
TIGR01489 139 hgcssspkglcK...gkvieklsekkkekivyiGDgvsDvcpakll 181
+++ +p g+ K + ++k + k e+i++ GDg +D+++ k+
MMSYN1_0710 190 ENIEINPIGVNKgygLEYVAKELNVKPEEILFFGDGENDLEAIKFA 235
566678999999666456666666689***************9986 PP
>> TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.7 0.0 1.7 2.2e+02 3 17 .. 1 15 [. 1 26 [. 0.82
2 ? -0.3 0.0 1.3 1.7e+02 88 118 .. 27 57 .. 16 104 .. 0.78
3 ? 9.6 0.0 0.0012 0.16 147 197 .. 200 249 .. 181 253 .. 0.87
Alignments for each domain:
== domain 1 score: -0.7 bits; conditional E-value: 1.7
TIGR01491 3 mikLvifDldGtLte 17
m k+++ D+dGt+
MMSYN1_0710 1 MYKIIAIDIDGTVYT 15
6799*******9864 PP
== domain 2 score: -0.3 bits; conditional E-value: 1.3
TIGR01491 88 vvrlLkekGlktavvsgGislLvkkvaeklq 118
+++ k+kG+k+ + +g ++ +a++l+
MMSYN1_0710 27 AIKKAKDKGIKIVIATGRTITTTRFIAKQLD 57
6778899999999998887777777777765 PP
== domain 3 score: 9.6 bits; conditional E-value: 0.0012
TIGR01491 147 kkgiavkrlkseLnaskeetvavGDskedasifevadlaialgdegeadev 197
+kg ++ +++eLn+ ee++ GD +d+ +++ a++ +a+ + ++d v
MMSYN1_0710 200 NKGYGLEYVAKELNVKPEEILFFGDGENDLEAIKFAGKGVAMK-NTKLDIV 249
789999*********************************9998.6666655 PP
>> TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.4 0.0 2.1 2.8e+02 2 12 .. 5 15 .. 4 57 .. 0.78
2 ? 10.8 0.0 0.00072 0.095 118 148 .. 206 236 .. 203 241 .. 0.91
Alignments for each domain:
== domain 1 score: -0.4 bits; conditional E-value: 2.1
TIGR01509 2 ilFDlDgvLvd 12
i++D+Dg+ +
MMSYN1_0710 5 IAIDIDGTVYT 15
78999999763 PP
== domain 2 score: 10.8 bits; conditional E-value: 0.00072
TIGR01509 118 lqalkklglkpeeclfvdDsaagieaakaaG 148
++++k+l++kpee+lf+ D ++ +ea k aG
MMSYN1_0710 206 EYVAKELNVKPEEILFFGDGENDLEAIKFAG 236
689***********************99888 PP
>> TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.2 0.1 0.054 7.1 576 608 .. 27 59 .. 23 64 .. 0.90
2 ? -2.8 0.1 1.8 2.4e+02 425 458 .. 148 179 .. 134 191 .. 0.75
3 ? 10.5 0.2 0.00017 0.022 689 723 .. 222 256 .. 217 265 .. 0.92
Alignments for each domain:
== domain 1 score: 2.2 bits; conditional E-value: 0.054
TIGR01106 576 avgkcrsagikvimvtgdhpitakaiaksvgii 608
a++k + gik+++ tg t++ iak + ++
MMSYN1_0710 27 AIKKAKDKGIKIVIATGRTITTTRFIAKQLDLL 59
7899***********************987665 PP
== domain 2 score: -2.8 bits; conditional E-value: 1.8
TIGR01106 425 asesallkfielalgsvkelrerykkvveipfns 458
a es + k+ ++ g+ ++r+ kk+ ++ f +
MMSYN1_0710 148 ALESQITKY--ICFGKKENMRQMRKKIEDLGFSA 179
566666666..58999999999999999998864 PP
== domain 3 score: 10.5 bits; conditional E-value: 0.00017
TIGR01106 689 tgdgvndspalkkadigvamgiagsdvskqaadmi 723
gdg nd a+k a gvam + d+ k+aad i
MMSYN1_0710 222 FGDGENDLEAIKFAGKGVAMKNTKLDIVKNAADDI 256
59******************************977 PP
>> TIGR01686 FkbH: FkbH domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.9 0.0 1.3 1.7e+02 4 17 .. 3 16 .. 1 44 [. 0.68
2 ? -1.1 0.0 1.5 1.9e+02 93 113 .. 50 70 .. 38 102 .. 0.78
3 ? 8.8 0.0 0.0014 0.18 88 134 .. 201 245 .. 188 278 .. 0.81
Alignments for each domain:
== domain 1 score: -0.9 bits; conditional E-value: 1.3
TIGR01686 4 KvlvlDlDnTLwgG 17
K++++D D T++
MMSYN1_0710 3 KIIAIDIDGTVYTR 16
89999999999864 PP
== domain 2 score: -1.1 bits; conditional E-value: 1.5
TIGR01686 93 rkiAkklNlgtdsllFiDDnp 113
r iAk+l l +s+ Fi n
MMSYN1_0710 50 RFIAKQLDLLNTSIPFIGQNG 70
5699**********9998775 PP
== domain 3 score: 8.8 bits; conditional E-value: 0.0014
TIGR01686 88 KseslrkiAkklNlgtdsllFiDDnpaElaevkielPvvtlecdeae 134
K+ l +Ak+lN+ ++ +lF D +l+ +k+++ + ++++
MMSYN1_0710 201 KGYGLEYVAKELNVKPEEILFFGDGENDLEAIKFAGK--GVAMKNTK 245
66678899**************************996..33333344 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (287 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 316 (0.07041); expected 89.8 (0.02)
Passed bias filter: 163 (0.0363191); expected 89.8 (0.02)
Passed Vit filter: 48 (0.0106952); expected 4.5 (0.001)
Passed Fwd filter: 34 (0.00757576); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 34 [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.28
# Mc/sec: 1421.19
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0710 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0726 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0726.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0726/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0726 [L=244]
Description: nagB: glucosamine-6-phosphate deaminase 5=Equivalog Carbon source transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-88 294.3 3.4 2e-88 294.1 3.4 1.0 1 TIGR00502 nagB: glucosamine-6-phosphate deaminase
4.1e-18 63.7 0.0 5.5e-18 63.3 0.0 1.1 1 TIGR01198 pgl: 6-phosphogluconolactonase
Domain annotation for each model (and alignments):
>> TIGR00502 nagB: glucosamine-6-phosphate deaminase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 294.1 3.4 8.8e-92 2e-88 1 248 [. 1 239 [. 1 243 [. 0.97
Alignments for each domain:
== domain 1 score: 294.1 bits; conditional E-value: 8.8e-92
TIGR00502 1 mklliletyeelsklaariiaekinefkpdaerpfvlGlatGgtPvglykqlielykagkvsfkkvvtfnldeyvglseehPesyhsfmyenffqhid 98
mkl+ le++e++++ aa+ii e+i++ kp+ vlGlatG+tP+++yk+li++y+ +++sfk+v+ fnldey +++++ +sy++fm+e++f+ id
MMSYN1_0726 1 MKLIVLENEEQVANKAAQIISEQIKN-KPN-S---VLGLATGSTPINTYKKLIQMYQEKQISFKDVISFNLDEYKDIDKNNKQSYYYFMNEQLFNFID 93
9*************************.999.5...9************************************************************** PP
TIGR00502 99 ikpeninilnGnaddleaecrryeekikslGkidlfllGiGadGhiafnePgsslesrtrvktltedtiiansrffegdvnkvPkkaltvGiktilds 196
i+++n +i+n + ++y+e+ik++ +idl+llG+G++Ghi+fneP ss++s t+++ lt++ti ansrff+ ++++vP +a+++G++ i+++
MMSYN1_0726 94 INKNNCYIPNASFY---DNPKVYDELIKKANGIDLQLLGLGVNGHIGFNEPDSSFDSLTQIVDLTNSTIKANSRFFD-SIDQVPTQAISMGLQSIMNA 187
*********97655...4679********************************************************.9******************* PP
TIGR00502 197 kevlllvsGkekaeavkklvegsvnedvtisalqlhkkvivvadeeaaqelk 248
k++lll++G +k+ea+ +l++g+++++++ ++lq+h++v++++d++aa++l
MMSYN1_0726 188 KKILLLATGVNKSEAIYRLIQGQITKKWPCTILQKHNDVTIIIDKNAASKLT 239
************************************************9986 PP
>> TIGR01198 pgl: 6-phosphogluconolactonase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 63.3 0.0 2.4e-21 5.5e-18 9 234 .] 9 238 .. 5 238 .. 0.84
Alignments for each domain:
== domain 1 score: 63.3 bits; conditional E-value: 2.4e-21
TIGR01198 9 aealaervatklekalaekgqallalsGGrspialleaLaaq....kldWsrihlflgDE.RivplddadsntkllrealLdrvaipasnihlvptel 101
e++a++ a+ + + +++k + +l+l+ G++pi +++L + +++++ + f DE +++++ +s + ++e l++ ++i+++n + +++
MMSYN1_0726 9 EEQVANKAAQIISEQIKNKPNSVLGLATGSTPINTYKKLIQMyqekQISFKDVISFNLDEyKDIDKNNKQSYYYFMNEQLFNFIDINKNNCYIPNASF 106
46788888888999999**********************9988899******99999999567***********************998877777766 PP
TIGR01198 102 sedveeaaekyeqelaaakqpeevpsfDlllLGmGpDgHta.....SLFPetpalqetek....lvv.vltkspkppheRitltlpvlnaakkvlllv 189
++ ++y++ +++a Dl lLG+G +gH+ S F+ ++ + ++ + + + ++p + i++ l+ + +akk+lll+
MMSYN1_0726 107 ----YDNPKVYDELIKKANGI------DLQLLGLGVNGHIGfnepdSSFDSLTQIVDLTNstikANSrFFDSIDQVPTQAISMGLQSIMNAKKILLLA 194
....57888999999988766......*************6555558888555444333323334431444455789********************* PP
TIGR01198 190 aGeeKaavlaeilkveaeelslpaalvlgsekllwlldeaaaekl 234
+G +K +++ + ++ ++ +++p ++++ ++ ++d++aa+kl
MMSYN1_0726 195 TGVNKSEAIYRLIQ-GQITKKWPCTILQKHNDVTIIIDKNAASKL 238
**************.888888*******************99886 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (244 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 290 (0.0646168); expected 89.8 (0.02)
Passed bias filter: 105 (0.0233957); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1668.55
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0726 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0727 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0727.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0727/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0727 [L=248]
Description: tpiA, tim: triose-phosphate isomerase 5=Equivalog Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.7e-57 190.9 2.4 7.8e-57 190.6 2.4 1.0 1 TIGR00419 tim: triose-phosphate isomerase
Domain annotation for each model (and alignments):
>> TIGR00419 tim: triose-phosphate isomerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 190.6 2.4 1.7e-60 7.8e-57 1 227 [. 5 237 .. 5 238 .. 0.95
Alignments for each domain:
== domain 1 score: 190.6 bits; conditional E-value: 1.7e-60
TIGR00419 1 lviinfKlnesvgkvelevaklaeevaseagvevavappfvdldvvkdeveseiqvaAqnvdavksGaftGeisAemlkdlGakgvligHsErRsllk 98
++ +n+K+n++ ++ ++++ +++ s+ ++ ++a+p+v l++ + ++ ++++aAqnv+ +++Ga+tGeis mlk++G+++v+igHsErR +++
MMSYN1_0727 5 VIFGNWKMNGTNESLTDFLNQVDNKIDSS-KIIAGLAVPYVMLQTGLKLAK-NVKIAAQNVHYKDKGAYTGEISTTMLKEIGVEYVIIGHSERREMFN 100
5899**********************775.5667**********9888777.9********************************************* PP
TIGR00419 99 eadeliekkvarlkelglksvvCvgetleereaartinnvattaaaaA.......lepdvvAvEPveliGtGkpvskAeaevveksvrdhlkk.vske 188
e+d ++kk +l e ++++++C getl+ +e+++ti+ v+++ +++ ++++A+EP+++iGt k+ + +ae+v k++r+ l+k +k+
MMSYN1_0727 101 ETDLDVNKKAKVLLENNITPIICCGETLQTKESGKTIEFVNNQINIMFegikkedAIKAIIAYEPIWAIGTEKTSTSSDAEEVCKQIRNNLAKiYDKN 198
***99************************************9999887787777777899*********************************889** PP
TIGR00419 189 vaesvrvlyGasvtaaedaelaaqldvdGvLlasavlka 227
ae+++++yG+sv+ ++ +e +++dG+L+++a+l a
MMSYN1_0727 199 TAEQIIIQYGGSVKPSNIQEYLKMPNIDGALVGGASLLA 237
************************************987 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (248 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 317 (0.0706328); expected 89.8 (0.02)
Passed bias filter: 138 (0.0307487); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1874.41
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0727 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0728 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0728.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0728/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0728 [L=278]
Description: HAD hydrolase, family IIB 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-37 126.6 8.5 3.2e-37 126.4 8.5 1.0 1 TIGR00099 Cof-subfamily: Cof-like hydrolase
2.4e-18 65.0 2.5 3.3e-18 64.5 2.5 1.2 1 TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
3.8e-17 60.8 7.4 2.1e-12 45.3 2.3 2.8 3 TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0
2.6e-14 51.3 2.7 2.3e-10 38.4 1.2 2.7 3 TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfa
7.5e-12 43.4 4.5 1.1e-11 42.9 0.4 2.7 2 TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-ph
9.6e-07 26.6 0.8 4.6e-06 24.3 0.6 2.0 2 TIGR00338 serB: phosphoserine phosphatase SerB
2.2e-06 25.2 0.0 1.4e-05 22.5 0.0 1.9 2 TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosp
1.8e-05 23.0 0.1 0.00074 17.7 0.0 2.2 2 TIGR02726 phenyl_P_delta: phenylphosphate carboxylase, delta
2.7e-05 22.3 0.6 0.0024 16.0 0.1 2.5 2 TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
0.00025 19.0 0.0 0.0012 16.8 0.0 2.1 2 TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydr
0.00026 19.2 0.0 0.00056 18.1 0.0 1.5 1 TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB
0.0012 16.6 0.2 0.0028 15.4 0.1 1.6 2 TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase
0.0038 14.7 0.0 0.0071 13.8 0.0 1.4 1 TIGR02471 sucr_syn_bact_C: sucrose-phosphate synthase, sucro
0.005 14.5 0.4 0.09 10.4 0.1 2.3 2 TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hy
Domain annotation for each model (and alignments):
>> TIGR00099 Cof-subfamily: Cof-like hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.4 8.5 1e-39 3.2e-37 2 252 .. 9 266 .. 8 271 .. 0.86
Alignments for each domain:
== domain 1 score: 126.4 bits; conditional E-value: 1e-39
TIGR00099 2 ifiDlDGTLlskdkeispetkealaklrekGikvvlaTGRs....ykevkeilkelgldplivanGaavvdengkeilykkpldldlveeilnilkkl 95
+++D+DGT + k i ++++e l++ ++kG+kvv++TGR+ +++k++ ++++ + ++n a ++d +++il +p+++d ++++++ +++
MMSYN1_0728 9 LILDMDGTSYYKMGPIIEKNIEPLKRIINKGVKVVFVTGRPvlakLNSLKHHGLLVDHQLIAGYNAACIYDLSKDQILLSNPISTDQAKKVFDLVTSD 106
799**************************************8776666666666666666666666666666666*******************9988 PP
TIGR00099 96 g.......ldvilysddsiyfsknkneifeiekkklaepkkevvknqlledddlkillllleaedldkleealkkeeleeelsvvsssedsieitakg 186
+ + ++++ +++ ++k +++ ++ +++ ++++ ++ + ++++ d ++k ++ll ++ +++++ l +e ++++ + +++ ei +k+
MMSYN1_0728 107 KyknsdikIWGYVDDLKTVITNKWTQNPSDYHDETVFFDGQVLEYKDIKDDFNFKFFKLLGFNAN-KEFYDILV---NELDFNIATNDNKLAEINKKN 200
86675544445677779999999999999999999999988777776777777777888877775.55666666...5899999************** PP
TIGR00099 187 vsKgsalqslaeklgislenviaiGDseNDieMleaagvgvamgnaneelkaladyvtdsndedgv 252
v+K+ a++ ++ +i+l+n++aiGD++ND eM+ ++g++va +n+ e +k++a+ +d+++e+g
MMSYN1_0728 201 VNKKLAVEWFSNYFNIDLKNIAAIGDGMNDWEMINHVGYKVAIKNSVEPIKKIANIYIDKTAEQGA 266
************************************************************999885 PP
>> TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 64.5 2.5 1e-20 3.3e-18 1 220 [. 8 242 .. 8 243 .. 0.76
Alignments for each domain:
== domain 1 score: 64.5 bits; conditional E-value: 1e-20
TIGR01484 1 llffDlDgTLldpklelseelieaLerlrealgvkvvivTGRslaeikellkqlnl...elpliaengalieaqgekly..aea....lpedvaevll 89
ll +D+DgT + + e++ie L+r+ ++ gvkvv+vTGR + + ++ lk +l ++ +n+a+i++ + ++ ++ ++ v++ ++
MMSYN1_0728 8 LLILDMDGTSYYKMGPIIEKNIEPLKRIINK-GVKVVFVTGRPVLAKLNSLKHHGLlvdHQLIAGYNAACIYDLSKDQIllSNPistdQAKKVFDLVT 104
6889*****999999****************.9************99999999998898677778899999876554441133343344455555555 PP
TIGR01484 90 seekelkeieailksls.eryv.gtfvedka..levaihysgqk.e...leqeldskllerlekigirkdleleailsrsn.alqkegetllevlpag 178
s++ ++++i+ ++ + ++ ++++ +++ ++ +++++gq e ++ + k+++ l + ++ ++++++ +++++ ++ + + l e+ +++
MMSYN1_0728 105 SDKYKNSDIKIWGYVDDlKTVItNKWTQNPSdyHDETVFFDGQVlEykdIKDDFNFKFFKLLGFNAN--KEFYDILVNELDfNIATNDNKLAEINKKN 200
5555555555444444432222466666655223556666666655666666666666666666665..999999999999***************** PP
TIGR01484 179 vdKgkalqalleelnlkkeeilafGDsgNDeemlevaglava 220
v+K a++++ +++n++ ++i a+GD++ND em++ +g++va
MMSYN1_0728 201 VNKKLAVEWFSNYFNIDLKNIAAIGDGMNDWEMINHVGYKVA 242
*************************************99987 PP
>> TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0175-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.8 0.0 3.4e-06 0.0011 1 45 [. 6 50 .. 6 89 .. 0.85
2 ? -0.3 0.0 0.61 2e+02 192 207 .. 93 108 .. 84 115 .. 0.88
3 ! 45.3 2.3 6.5e-15 2.1e-12 139 211 .. 194 266 .. 138 270 .. 0.82
Alignments for each domain:
== domain 1 score: 16.8 bits; conditional E-value: 3.4e-06
TIGR01487 1 iklvavDiDgTltdknrlislraieairklekkGikvvlvtGnev 45
ikl+ D+DgT +k i ++ ie ++++ +kG+kvv vtG+ v
MMSYN1_0728 6 IKLLILDMDGTSYYKMGPIIEKNIEPLKRIINKGVKVVFVTGRPV 50
79999*************************************954 PP
== domain 2 score: -0.3 bits; conditional E-value: 0.61
TIGR01487 192 ddelKeiaDlvtenes 207
+d+ K++ Dlvt+ ++
MMSYN1_0728 93 TDQAKKVFDLVTSDKY 108
7999*********987 PP
== domain 3 score: 45.3 bits; conditional E-value: 6.5e-15
TIGR01487 139 vhilkkgvdKgvgvkklkellGlkkeevaaiGDsenDldlFrvagfkvavanAddelKeiaDlvtenesGegv 211
+ i kk+v+K+ +v+ + + + ++ +++aaiGD+ nD ++ + +g+kva+ n + +K+ia + ++ +g
MMSYN1_0728 194 AEINKKNVNKKLAVEWFSNYFNIDLKNIAAIGDGMNDWEMINHVGYKVAIKNSVEPIKKIANIYIDKTAEQGA 266
5799*********************************************************987776665555 PP
>> TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.2 0.0 0.00015 0.047 2 41 .. 10 49 .. 9 69 .. 0.93
2 ? -1.2 0.0 0.91 2.9e+02 186 212 .. 83 111 .. 70 117 .. 0.72
3 ! 38.4 1.2 7e-13 2.3e-10 138 217 .. 191 267 .. 164 274 .. 0.87
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 0.00015
TIGR01482 2 asDlDgTlvdeeralnlsaleairkaesvyillvlvtGrs 41
+ D+DgT ++ + ++ +e +++ ++++++v+vtGr
MMSYN1_0728 10 ILDMDGTSYYKMGPIIEKNIEPLKRIINKGVKVVFVTGRP 49
78************************************95 PP
== domain 2 score: -1.2 bits; conditional E-value: 0.91
TIGR01482 186 fkvavan..Aqeelkewadlvteskygeg 212
++ +n +++ k++ dlvt ky ++
MMSYN1_0728 83 DQILLSNpiSTDQAKKVFDLVTSDKYKNS 111
55666663347999999****98888776 PP
== domain 3 score: 38.4 bits; conditional E-value: 7e-13
TIGR01482 138 GkdldilpkgvdKGkavkylkeklgikpeeilviGDSeNDidlFevavfkvavanAqeelkewadlvteskygegneeev 217
k ++i +k+v+K av+ + + i ++i++iGD+ ND ++ + +++kva+ n e +k++a++ ++ +g +v
MMSYN1_0728 191 NKLAEINKKNVNKKLAVEWFSNYFNIDLKNIAAIGDGMNDWEMINHVGYKVAIKNSVEPIKKIANIYIDKTAEQG---AV 267
5567899************************************************************99988888...33 PP
>> TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.4 0.4 0.21 66 1 11 [. 6 16 .. 6 83 .. 0.82
2 ! 42.9 0.4 3.3e-14 1.1e-11 66 146 .. 192 272 .. 184 277 .. 0.90
Alignments for each domain:
== domain 1 score: 1.4 bits; conditional E-value: 0.21
TIGR01670 1 lkllildvdGv 11
+kllild+dG
MMSYN1_0728 6 IKLLILDMDGT 16
68999999985 PP
== domain 2 score: 42.9 bits; conditional E-value: 3.3e-14
TIGR01670 66 gikelyqGskdklaifeeileklalkdeevafiGddlvdkevlekvGlsvavkdaheelrkvadyvtrkkGGkgavrevie 146
++ e+ + + +k ++e + ++++ +++a+iGd ++d+e++++vG+ va+k+++e ++k+a++ + k +gav e i+
MMSYN1_0728 192 KLAEINKKNVNKKLAVEWFSNYFNIDLKNIAAIGDGMNDWEMINHVGYKVAIKNSVEPIKKIANIYIDKTAEQGAVEEFIK 272
666777777788888899999********************************************************9875 PP
>> TIGR00338 serB: phosphoserine phosphatase SerB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.6 0.0 0.61 2e+02 14 25 .. 6 17 .. 2 51 .. 0.75
2 ! 24.3 0.6 1.4e-08 4.6e-06 145 209 .. 194 260 .. 174 267 .. 0.74
Alignments for each domain:
== domain 1 score: -0.6 bits; conditional E-value: 0.61
TIGR00338 14 kklvvfDlDstl 25
kl+++D+D t
MMSYN1_0728 6 IKLLILDMDGTS 17
688899999874 PP
== domain 2 score: 24.3 bits; conditional E-value: 1.4e-08
TIGR00338 145 geivdesakaktllk.llekegislektvavGDGanDlsmikaAglgiafnak.pvlkekadiviek 209
+ei ++++ k ++ + +i+l+++ a+GDG nD +mi++ g ++a + + +k+ a+i i+k
MMSYN1_0728 194 AEINKKNVNKKLAVEwFSNYFNIDLKNIAAIGDGMNDWEMINHVGYKVAIKNSvEPIKKIANIYIDK 260
455555555555554145667****************************865415678888888876 PP
>> TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.3 0.0 0.25 81 4 40 .. 11 47 .. 8 66 .. 0.77
2 ! 22.5 0.0 4.4e-08 1.4e-05 163 234 .. 188 257 .. 167 274 .. 0.80
Alignments for each domain:
== domain 1 score: 0.3 bits; conditional E-value: 0.25
TIGR01486 4 tDlDgtLldehsYdlgpAkevlerlqelgipvilctS 40
D+Dgt + + ++ e l+r+ + g++v+++t
MMSYN1_0728 11 LDMDGTSYYKMGPIIEKNIEPLKRIINKGVKVVFVTG 47
56677655555544555667899999********996 PP
== domain 2 score: 22.5 bits; conditional E-value: 4.4e-08
TIGR01486 163 vkgarfyhvlgaesdKGkAvnalkqlykekekaikvvglGDspnDlpllevvdlavvvkgkdgeskslkele 234
++ +++ + ++++K Av++ ++++ + + ++GD+ nD +++ v ++v +k+ +++k++ +++
MMSYN1_0728 188 TNDNKLAEINKKNVNKKLAVEWFSNYFNID--LKNIAAIGDGMNDWEMINHVGYKVAIKNSVEPIKKIANIY 257
566888888999***************998..6778899********************9999999988733 PP
>> TIGR02726 phenyl_P_delta: phenylphosphate carboxylase, delta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.2 0.0 0.069 22 6 45 .. 5 44 .. 1 64 [. 0.79
2 ! 17.7 0.0 2.3e-06 0.00074 93 151 .. 213 271 .. 188 277 .. 0.85
Alignments for each domain:
== domain 1 score: 3.2 bits; conditional E-value: 0.069
TIGR02726 6 niklvildvdgvmtdgrivindegiesrnfdikdgmgviv 45
+ikl+ild+dg i ++ ie + i+ g+ v+
MMSYN1_0728 5 EIKLLILDMDGTSYYKMGPIIEKNIEPLKRIINKGVKVVF 44
79*********98776666777778877777777776664 PP
== domain 2 score: 17.7 bits; conditional E-value: 2.3e-06
TIGR02726 93 emnisdaevcyvgddlvdlsmmkrvglavavgdavadvkevaayvttargghgavreva 151
+ni +++ +gd + d m+++vg va+ ++v +k++a +gav e
MMSYN1_0728 213 YFNIDLKNIAAIGDGMNDWEMINHVGYKVAIKNSVEPIKKIANIYIDKTAEQGAVEEFI 271
578999999*********************************98888888999999864 PP
>> TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.2 0.1 0.032 10 1 54 [. 7 51 .. 7 70 .. 0.71
2 ! 16.0 0.1 7.4e-06 0.0024 78 135 .. 182 241 .. 170 247 .. 0.70
Alignments for each domain:
== domain 1 score: 4.2 bits; conditional E-value: 0.032
TIGR01662 1 klvvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsgig 54
kl++lD+Dgt y+ ++++ i+ l+ + ++G+kvv vt++ +
MMSYN1_0728 7 KLLILDMDGTSY----YKMG----PIIEKNIEPLKRIINKGVKVVFVTGRP-VL 51
789999999966....2222....244667888888888999999999887.44 PP
== domain 2 score: 16.0 bits; conditional E-value: 7.4e-06
TIGR01662 78 idvliacp.hs.kceyrKp.kt.gmleealkrlneidakesvvvGDavltDleaakrvGlat 135
+d+ ia++ ++ + +K+ + ++e+ + + +id k+++ +GD ++D e+++ vG+++
MMSYN1_0728 182 LDFNIATNdNKlAEINKKNvNKkLAVEWFSNYF-NIDLKNIAAIGD-GMNDWEMINHVGYKV 241
667777774335223344443304555566666.5***********.99**********996 PP
>> TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.0 0.0 1.1 3.5e+02 2 10 .. 9 17 .. 8 48 .. 0.76
2 ! 16.8 0.0 3.7e-06 0.0012 132 175 .. 190 235 .. 162 237 .. 0.75
Alignments for each domain:
== domain 1 score: -1.0 bits; conditional E-value: 1.1
TIGR01488 2 aifDfDgTL 10
i+D+DgT
MMSYN1_0728 9 LILDMDGTS 17
688999984 PP
== domain 2 score: 16.8 bits; conditional E-value: 3.7e-06
TIGR01488 132 ieg.e.vnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlpllk 175
+ + n ++ +K ++++ ++ ++d+k+i+a+GD++nD +++
MMSYN1_0728 190 DNKlAeINKKNVNKKLAVEWFSNYFNIDLKNIAAIGDGMNDWEMIN 235
333224899999*******77999999*****************97 PP
>> TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.1 0.0 1.8e-06 0.00056 149 197 .. 196 244 .. 183 248 .. 0.88
Alignments for each domain:
== domain 1 score: 18.1 bits; conditional E-value: 1.8e-06
TIGR01490 149 enlkgeeKvkalaellaeekidlkesyaYsDsisDlpllslvghpvvvn 197
n k +K a++ + + +idlk+ +a +D ++D +++++vg +v+++
MMSYN1_0728 196 INKKNVNKKLAVEWFSNYFNIDLKNIAAIGDGMNDWEMINHVGYKVAIK 244
5667778999**999999**************************99986 PP
>> TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.8 0.0 3.4 1.1e+03 22 40 .. 30 48 .. 9 82 .. 0.59
2 ! 15.4 0.1 8.7e-06 0.0028 150 216 .] 177 244 .. 165 244 .. 0.84
Alignments for each domain:
== domain 1 score: -2.8 bits; conditional E-value: 3.4
TIGR02463 22 etlkrLqeagvPvilctsk 40
e lkr+ ++gv v+ t +
MMSYN1_0728 30 EPLKRIINKGVKVVFVTGR 48
4567777777777777665 PP
== domain 2 score: 15.4 bits; conditional E-value: 8.7e-06
TIGR02463 150 allaelglal.vrGnRlsHllgaeaskgkavnalkkalnekdvkvlgLGDspnDlpLLevaDlavvvk 216
+l++el ++ ++ n+l + +++++k av ++ +++n ++ ++GD+ nD +++ + ++v +k
MMSYN1_0728 177 ILVNELDFNIaTNDNKLAEINKKNVNKKLAVEWFSNYFNIDLKNIAAIGDGMNDWEMINHVGYKVAIK 244
5566666666245789999999***************999999999*******************987 PP
>> TIGR02471 sucr_syn_bact_C: sucrose-phosphate synthase, sucrose phosphatase-like domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.8 0.0 2.2e-05 0.0071 156 234 .. 199 274 .. 175 276 .. 0.83
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 2.2e-05
TIGR02471 156 lraskelalrylslrwglpleqlLvagdsgndeellrGdtlgvvvgnhdpeLekLreleriyfaensyalGileglehy 234
k+la+ + s ++++l+++ +gd nd e+++ v + n +e +++ +iy + + + e ++hy
MMSYN1_0728 199 KNVNKKLAVEWFSNYFNIDLKNIAAIGDGMNDWEMINHVGYKVAIKNS---VEPIKKIANIYIDKTAEQGAVEEFIKHY 274
556799*******************************99999999885...5666677789988888777777788888 PP
>> TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.7 0.0 0.13 43 4 14 .. 6 16 .. 3 22 .. 0.87
2 ! 10.4 0.1 0.00028 0.09 147 189 .. 202 244 .. 175 254 .. 0.83
Alignments for each domain:
== domain 1 score: 1.7 bits; conditional E-value: 0.13
TIGR01491 4 ikLvifDldGt 14
ikL+i D+dGt
MMSYN1_0728 6 IKLLILDMDGT 16
9*********9 PP
== domain 2 score: 10.4 bits; conditional E-value: 0.00028
TIGR01491 147 kkgiavkrlkseLnaskeetvavGDskedasifevadlaialg 189
+k av+ + + n+ +++++a+GD ++d +++ ++ +a+
MMSYN1_0728 202 NKKLAVEWFSNYFNIDLKNIAAIGDGMNDWEMINHVGYKVAIK 244
556699***************************9999988886 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (278 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 210 (0.0467914); expected 89.8 (0.02)
Passed bias filter: 98 (0.021836); expected 89.8 (0.02)
Passed Vit filter: 22 (0.00490196); expected 4.5 (0.001)
Passed Fwd filter: 14 (0.00311943); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 14 [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.21
# Mc/sec: 1901.05
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0728 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0729 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0729.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0729/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0729 [L=531]
Description: pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 5=Equivalog Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-166 551.8 4.2 3.5e-166 551.5 4.2 1.1 1 TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosph
4.1e-08 30.4 0.3 4.1e-08 30.4 0.3 1.7 2 TIGR01696 deoB: phosphopentomutase
2.4e-06 25.0 1.0 4.3e-06 24.1 1.0 1.3 1 TIGR00306 apgM: phosphoglycerate mutase (2,3-diphosphoglycer
Domain annotation for each model (and alignments):
>> TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 551.5 4.2 2.3e-169 3.5e-166 2 503 .. 6 527 .. 5 528 .. 0.93
Alignments for each domain:
== domain 1 score: 551.5 bits; conditional E-value: 2.3e-169
TIGR01307 2 kvvLvilDGyGlseeedenailaaktPvldelieakpyslldasgldvGLPkgqmGnsevGhlniGaGRvvyqdlvrieqaikdgelfendalleaid 99
+v+L+ilDG+G+se +++na+ +a+ +++ l +++p +asg+ vGLP+ qmGnsevGh+ +GaGR+ + l++++++ k++++ +n+ ++++++
MMSYN1_0729 6 PVLLAILDGWGISEPDKGNAVDNANMVFVEYLKKTYPWLKAHASGKWVGLPDNQMGNSEVGHIHLGAGRINLESLAKLNHETKTNNIAKNEEIVKSFE 103
79************************************************************************************************ PP
TIGR01307 100 rvkeaekklhllGLlsdGGvhshedhllalvelaakrgiekvvlhlftDGRDtapksakkslekleavlkel.gkgeiasvsGRyyamDRDkrwdRve 196
vk+++++lhl+GL+s+GGvhsh dh++a+ + a + gi+++ l+tDGRDt+pk a +++++l + +k+ + g i+s+sGRyyamDRDkr+dR +
MMSYN1_0729 104 YVKNNNSALHLMGLFSNGGVHSHFDHMIAIYKAAIDYGITNIKFDLITDGRDTKPKLAYDFVKDLLELIKQNnNIGVISSISGRYYAMDRDKRFDRSR 201
****************************************************************99998876156789******************** PP
TIGR01307 197 kaykalvseek.eeasdaveaieeaYekdetDefvkptvikalaeeaalkdddaviflnfRaDRaReltrllvdadfddfkrekakkle.......fv 286
+ay+a+++ ++ ++++ ++i+++Y ++ De + p+ ++ + + +lk +da+i++nfR+DRa +++++l+++++ +++ e+++++e fv
MMSYN1_0729 202 IAYNAITNRNNvRSFTNILDYIQQEYMINHDDEMIIPAFNQD-DLNGNLKANDAIIMTNFRPDRAIQISSILTNKNYIAWQSEAFSDAEfigdkirFV 298
********99989999***********************999.66899****************************999999987654333333449* PP
TIGR01307 287 tlteYdetlpva.vafppeelknvlgevlakkdlkqlriaetekYahvtfffnGGv...........eeefkgeertlipspkvatYDlaPemsakav 372
+++Y ++++++ +a+pp+ l+n+lg++l+k +lkqlriaetek ahvtfff+GG e ++++ +lips kvatYDl+P+msa ++
MMSYN1_0729 299 SMMKYSDSITSPhIAYPPKPLTNTLGQYLSKLGLKQLRIAETEKIAHVTFFFDGGNdyfknglakndEITLANAYIDLIPSAKVATYDLKPQMSAVEI 396
*****9999886489****************************************7333333333334566777778********************* PP
TIGR01307 373 tdkllealeegkfdlvvvnyanpDmvGhtGkfeaavkaveavDkelgrive.alkkvgitllltaDhGnaeemkdeaenpvtahtvnpvpfvlvepkn 469
tdklle++++++fd++v+n+an DmvGhtG+ +a+ a +++D++l+ri e ++ ++++ +++taDhGnae m+d++++ +ht+ vp+++++ n
MMSYN1_0729 397 TDKLLEEIKKDEFDFIVLNFANCDMVGHTGNNKATEIACKTLDEQLKRIHEeFVLRHNGIMIITADHGNAEIMIDKDGQVNKKHTTSLVPIIITD-LN 493
*************************************************86378899999**********************************9.99 PP
TIGR01307 470 vkavkeggvLadiaptiLellgleqPaemtgksl 503
+k++++ ++a +aptiL+l+++e P+em+ +s+
MMSYN1_0729 494 IKLKQNDPAIAKVAPTILDLMNIEIPKEMELESM 527
9****************************98887 PP
>> TIGR01696 deoB: phosphopentomutase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.5 0.1 0.55 8.2e+02 24 69 .. 60 103 .. 58 111 .. 0.66
2 ! 30.4 0.3 2.7e-11 4.1e-08 252 373 .. 391 516 .. 373 521 .. 0.80
Alignments for each domain:
== domain 1 score: -3.5 bits; conditional E-value: 0.55
TIGR01696 24 eGadtlghiaealdklnlpnleklGlgkieelagvdaveevlayya 69
G +ghi + ++nl l+kl + + + ++ee++ +
MMSYN1_0729 60 MGNSEVGHIHLGAGRINLESLAKLNH--ETKTNNIAKNEEIVKSFE 103
67778899999988899999998764..344555556666555544 PP
== domain 2 score: 30.4 bits; conditional E-value: 2.7e-11
TIGR01696 252 ksnmdgldkvikelkedftgisfanlvdfdalyGhrrdkeGyaaaleefdarlpellsk..lreddlliltadhGndptatGtd......htreyipv 341
+s + dk+++e+k+d + +n+ + d Gh +++ a + +d++l + + lr++ ++i+tadhGn ++ d ht +p+
MMSYN1_0729 391 MSAVEITDKLLEEIKKDEFDFIVLNFANCDM-VGHTGNNKATEIACKTLDEQLKRIHEEfvLRHNGIMIITADHGNAEIMIDKDgqvnkkHTTSLVPI 487
5777889**********9999999***9996.699999999999999999988888764338**************999765544444459******* PP
TIGR01696 342 lvyspkvkkgqalesaetfadiGatladnfnt 373
++ +k +++ + a++ t+ d +n+
MMSYN1_0729 488 IITDLNIKLK---QNDPAIAKVAPTILDLMNI 516
*998887766...4566677777777766665 PP
>> TIGR00306 apgM: phosphoglycerate mutase (2,3-diphosphoglycerate-independent), archaeal form
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.1 1.0 2.8e-09 4.3e-06 279 364 .. 401 494 .. 383 499 .. 0.78
Alignments for each domain:
== domain 1 score: 24.1 bits; conditional E-value: 2.8e-09
TIGR00306 279 kaliealeeyDfvlvhvkgaDEagHdgdaeeKvrviEkiDelivgkll.alkldetlliltaDHsTP.ve.......vkiHsadpvPivlvgkgv 364
+ i+ + e+Df++++ + D +gH+g+ + + +De + + + ++ ++i+taDH + +k+H++ vPi+++ ++
MMSYN1_0729 401 LEEIKKD-EFDFIVLNFANCDMVGHTGNNKATEIACKTLDEQLKRIHEeFVLRHNGIMIITADHGNAeIMidkdgqvNKKHTTSLVPIIITDLNI 494
4445544.5***********************************7666445566689*******9876541123333578999999999987665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (531 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 274 (0.0610517); expected 89.8 (0.02)
Passed bias filter: 127 (0.0282977); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.22
# Mc/sec: 3466.09
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0729 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0730 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0730.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0730/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0730 [L=199]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (199 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 297 (0.0661765); expected 89.8 (0.02)
Passed bias filter: 114 (0.0254011); expected 89.8 (0.02)
Passed Vit filter: 15 (0.00334225); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1428.86
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0730 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0732 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0732.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0732/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0732 [L=222]
Description: deoC: deoxyribose-phosphate aldolase 3=Putative Metabolic process
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.6e-83 275.8 9.2 5.3e-83 275.6 9.2 1.0 1 TIGR00126 deoC: deoxyribose-phosphate aldolase
------ inclusion threshold ------
0.01 12.6 3.1 0.037 10.7 1.3 2.4 2 TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate)
Domain annotation for each model (and alignments):
>> TIGR00126 deoC: deoxyribose-phosphate aldolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 275.6 9.2 2.3e-86 5.3e-83 2 209 .. 5 212 .. 4 214 .. 0.99
Alignments for each domain:
== domain 1 score: 275.6 bits; conditional E-value: 2.3e-86
TIGR00126 2 lakliDhtalkadtteedietlcaeAkkykfaavcvnpsyvslAkelLkgteveictvvgFPlGasttevkllEakeaieeGAdEvDvviniaalkdk 99
l+k+iDht lk+++t++di++lc++A++y+fa+vcvn + sl kelLk+++v i+ vvgFPlGa tevk++E+k+aie+G dE+D+v+ni+alkdk
MMSYN1_0732 5 LNKYIDHTLLKPEATKQDIINLCNQAIQYDFATVCVNTCWTSLCKELLKNSNVGITNVVGFPLGACLTEVKVFETKKAIENGCDEIDMVLNIGALKDK 102
89************************************************************************************************ PP
TIGR00126 100 neevviedikavveacakvllKvilEtalLtdeekkkAseisieagadfvKtstgfsakgAtvedvrlmkkvvgdevgvKasGGvrtaedalalieag 197
+ ++v +d+k v++a+++ +KvilE +lLt++e++kA+e++++ag+dfvKtstgf++ gA ++dv+lm +vv+++ +vKa+GGvrt +da+a+i+ag
MMSYN1_0732 103 DYDLVLNDMKEVKKAANDHVVKVILENCLLTEQEIIKACELAVKAGIDFVKTSTGFNKSGANIKDVKLMSEVVKNKAKVKAAGGVRTYDDAIAMINAG 200
************************************************************************************************** PP
TIGR00126 198 aerigasaavai 209
a+r+g+s +v+i
MMSYN1_0732 201 ASRLGTSGSVEI 212
*******99987 PP
>> TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.2 0.0 0.026 59 219 259 .. 16 58 .. 11 103 .. 0.65
2 ? 10.7 1.3 1.6e-05 0.037 276 314 .. 166 204 .. 103 210 .. 0.64
Alignments for each domain:
== domain 1 score: 0.2 bits; conditional E-value: 0.026
TIGR01036 219 PDLseedlediadslveldidGviatn..ttvsrdlvtgakna 259
P+ +++d++++ + +++ d + v + t + ++l++ ++
MMSYN1_0732 16 PEATKQDIINLCNQAIQYDFATVCVNTcwTSLCKELLKNSNVG 58
7888999999999999999888765322255666666655543 PP
== domain 2 score: 10.7 bits; conditional E-value: 1.6e-05
TIGR01036 276 eiirrlakelkgrlpligvGGidsakealekikaGasLl 314
+ ++ +++ +k++ + ++GG+ + ++a i+aGas l
MMSYN1_0732 166 KDVKLMSEVVKNKAKVKAAGGVRTYDDAIAMINAGASRL 204
336778999***************************976 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (222 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 288 (0.0641711); expected 89.8 (0.02)
Passed bias filter: 84 (0.0187166); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1594.01
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0732 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0733 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0733.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0733/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0733 [L=558]
Description: pgcA 4=Probable Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-50 170.2 0.0 1e-49 167.6 0.0 1.8 1 TIGR03990 Arch_GlmM: phosphoglucosamine mutase
4.5e-27 92.8 0.0 1.5e-25 87.8 0.0 2.1 2 TIGR01455 glmM: phosphoglucosamine mutase
5.5e-26 89.0 0.5 7.6e-25 85.2 0.5 2.3 1 TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate
Domain annotation for each model (and alignments):
>> TIGR03990 Arch_GlmM: phosphoglucosamine mutase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 167.6 0.0 6.9e-53 1e-49 4 425 .. 45 531 .. 42 552 .. 0.79
Alignments for each domain:
== domain 1 score: 167.6 bits; conditional E-value: 6.9e-53
TIGR03990 4 fgtsGiRgvvg...eeltpelalkvakalgtvl.......ekkkvvvgrDtRtsgellenaviagllstGvdVvdl...glvptPtlqyavkeegada 88
fgt GiRg++g ++++ ++ kv+ a++++l +k vv+g+D+R ++ ++++v+ l+s ++ + + +l ptP++++a+k ++ +
MMSYN1_0733 45 FGTAGIRGILGagpGRFNVYTIKKVTIAYAKLLqtkysndLNKGVVIGHDNRHNSKKFAKLVADILTSFNIKAYLFknnDLQPTPVVSFATKALNCIG 142
9**********7777899999999999***99999999887899***************************998655559****************** PP
TIGR03990 89 GimiTASHNPpeyNgiKllnsdGvelsreeeeeieeilekeefelaewdevg.....kvkeeedalekyieailk.kvdveaikkkklkVvvDcgnga 180
Gi+iTASHNP+eyNg K+ ++ G++l ++++ i + ++ e ++ +w + ++ ++++++ky+e+i + ++ ++ +k++lk+++ ++ng+
MMSYN1_0733 143 GIVITASHNPAEYNGYKIYDPYGCQLMPHDTDVIANYMN-EITNILDWTFISnnnllEIV-DQTVIDKYFEMIKNlEFY-KDQDKSNLKIIYSAVNGT 237
*******************************99998777.66677777666522111444.999*********996554.44799************* PP
TIGR03990 181 gslvtpellrelgvkvitlnaep..dGtFpg.rnpEPtee.nLkelsklvketgadlgiahDgDaDRl.vlvdekgefi..eedktlallakallekk 271
gsl tp +l++ g +vi+++ + d tF + np+P + k ++ k+ +ad+ i D+DaDR ++++ + efi ++++t a+l ++ l++
MMSYN1_0733 238 GSLYTPIVLKQSGYEVIEVKEHAfeDETFKNvINPNPEFDpAWKIPLEYAKKYDADIIILNDPDADRFgMAIKHNNEFIrlNGNQTGAILIDWKLSNL 335
*******************988544999985358888755155556799******************85889999999844699*********97743 PP
TIGR03990 272 kgg.......kvvtnvssSravedvlee.agvevirtkvGevnvaeklke.....egavfGgEgnGgvifpelqlvrDgllaaalllella...eegk 353
k +++++ +S + +++++e ++++v+ t G +++ + + vf+ E++ g++ + + +Dg+ a + e+ +++
MMSYN1_0733 336 KRLnklpknpALYSSFVTSDLGDRIASEtYNANVVKTLTGFKWMGQEMLKeplngLNFVFAYEESYGYVIDDSTRDKDGIQASIIAAEACWyykNQNM 433
3112223334788999999999998865489******9998888888877343224569******999999999****99876666665432225555 PP
TIGR03990 354 k....lsellaelpkyallkekvel....eeekleevleaveeel.seae................vdtiDGvridled.gWvlvRpSgTEpivRiya 425
+ l++l +++ y++ ++++ +++k + +++ ++++ ++ + + D ++i led +W+ +RpSgTEp++ iy
MMSYN1_0733 434 TlvdyLNQLYEKYGYYYTTTYNLNFkpeeKDSKIAPIMKLLRTTGiKQINnlkvvkiedyinglynMPSEDLLKIYLEDkSWIAIRPSGTEPKLKIYF 531
4222256777888888999888888765555566677777766543333356677776666666666677889****9956**************985 PP
>> TIGR01455 glmM: phosphoglucosamine mutase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 87.8 0.0 1e-28 1.5e-25 1 380 [. 45 462 .. 45 488 .. 0.76
2 ! 3.0 0.0 0.0053 7.9 400 420 .. 510 530 .. 502 553 .. 0.74
Alignments for each domain:
== domain 1 score: 87.8 bits; conditional E-value: 1e-28
TIGR01455 1 FGtDGvRgk..ankeeltaelalklGaaagrvlkkrestk..kkvviGkDtRlsgemlesalvaGLtsaGvevlkl...GvlptPavayltralrada 91
FGt G+Rg a+ + + ++ k+ a ++ l+ + s+ k vviG+D R ++ ++ ++ Lts ++++ + ptP v++ t+al+
MMSYN1_0733 45 FGTAGIRGIlgAGPGRFNVYTIKKVTIAYAKLLQTKYSNDlnKGVVIGHDNRHNSKKFAKLVADILTSFNIKAYLFknnDLQPTPVVSFATKALNCIG 142
9*******822445678899999**********99877766588****************9999*********986332578**************** PP
TIGR01455 92 GvvisashnPyeDnGiklFgaeGlklddeleeeiealldee....elalveseelGkvkrvedalerYieflks.tlpkklslsglkvvlDcanGaay 184
G+vi ashnP+e nG k++++ G +l + + i + ++e + +++++l + ++++ ++++Y e +k+ ++ k+ + s+lk++ nG +
MMSYN1_0733 143 GIVITASHNPAEYNGYKIYDPYGCQLMPHDTDVIANYMNEItnilDWTFISNNNLLEIVDQT-VIDKYFEMIKNlEFYKDQDKSNLKIIYSAVNGTGS 239
**************************988888888887776533455677788887777765.678888888763788999***************** PP
TIGR01455 185 kvapkvfrelgaeviaigvep.......dGlnineevGsthlealqkavreseadlGlafDGDaDRv.lavDekGdiv..dGDkilllla....kalk 268
p v+++ g evi +++++ + +n n e l + ++ +ad+ + D DaDR +a+ ++ + + +G++ ++l +lk
MMSYN1_0733 240 LYTPIVLKQSGYEVIEVKEHAfedetfkNVINPNPEFDPAWKIPL-EYAKKYDADIIILNDPDADRFgMAIKHNNEFIrlNGNQTGAILIdwklSNLK 336
***************998876222212233444444554444455.4568899*************86778888887644788765544311125788 PP
TIGR01455 269 esgeLkentvv..atvmsnlglekaleklglklartavGDryvleellek.....glnlGgeqsGhvilldlsttGDgivsalqvlkl...lkksgss 356
+ ++L++n + v s+lg + a e+ ++++t G +++ +e+l++ ++ e+s ++ d + Dgi++++ ++ k+++++
MMSYN1_0733 337 RLNKLPKNPALysSFVTSDLGDRIASETYNANVVKTLTGFKWMGQEMLKEplnglNFVFAYEESYGYVIDDSTRDKDGIQASIIAAEAcwyYKNQNMT 434
8999*9996542267999*************************9999987333223446789998888999999*****9988776641215777777 PP
TIGR01455 357 l....selakelekvPqvlvnvrvkdkk 380
l ++l+++ + ++ n+++k ++
MMSYN1_0733 435 LvdylNQLYEKYGYYYTTTYNLNFKPEE 462
6111134445555566677777776544 PP
== domain 2 score: 3.0 bits; conditional E-value: 0.0053
TIGR01455 400 lgkkGRillRpsGtepliRvm 420
l++k i +RpsGtep +++
MMSYN1_0733 510 LEDKSWIAIRPSGTEPKLKIY 530
6778889*********88763 PP
>> TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 85.2 0.5 5.1e-28 7.6e-25 38 541 .. 41 549 .. 13 557 .. 0.75
Alignments for each domain:
== domain 1 score: 85.2 bits; conditional E-value: 5.1e-28
TIGR01132 38 qkvefGtsGhrG..salkgtfneahilaiaqavv...evraaqGitGplyiGkdthalsepafvsvlevlaanqvevivqennrytptpavshailty 130
+++fGt+G rG a g fn i ++ a + +++ + + + iG+d s+ + v ++l++ ++++ + +nn ptp vs+a +
MMSYN1_0733 41 LELKFGTAGIRGilGAGPGRFNVYTIKKVTIAYAkllQTKYSNDLNKGVVIGHDNRHNSKKFAKLVADILTSFNIKAYLFKNNDLQPTPVVSFATKAL 138
4679********44478899******999988661115677889999***********************************************8887 PP
TIGR01132 131 nkgkkealadGivitpshnppedGGikynppnGGpaetevtkaiedranellkdrlkgvkrldlekalksetvkekdlvkpyvddladvvdlaairka 228
n Givit shnp e G k p G ++ t++i++ ne+ + ++ ++ l+ + ++ ++++y + + ++ + k+
MMSYN1_0733 139 NC------IGGIVITASHNPAEYNGYKIYDPYGCQLMPHDTDVIANYMNEITNIL--DWTFISNNNLLE---IVDQTVIDKYFEMIKNLEFYKDQDKS 225
77......89***************************************986544..333455555544...6678899*********99999999** PP
TIGR01132 229 glrlGvdplGGagvdywkeiaekynldltlvneav..datfrfmtldkdGkirmdcsspyamagllklkdky..dlafgndadadrhGivtpdkG... 319
+l++ + G+g y + ++ + ++ v+e+ d+tf+ + i + + a l+ +ky d+ + nd+dadr G+ ++
MMSYN1_0733 226 NLKIIYSAVNGTGSLYTPIVLKQSGYEVIEVKEHAfeDETFKNV-------INPNPEFDPAWKIPLEYAKKYdaDIIILNDPDADRFGMAIKHNNefi 316
****************9999999999999998865346777654.......444444444444444444444227999**********9876443222 PP
TIGR01132 320 llnpnhylavaieylykh...rqqwaaevavGktlvssalidrvvad.lgrklvevpvGfkwfvdGlldg.....slGfGGeesaGasflrkdGtvws 408
ln n a+ i++ ++ ++ +++ a+ ++v+s l dr++++ + ++v+ Gfkw+ + +l+ ++ f ees G + d +
MMSYN1_0733 317 RLNGNQTGAILIDWKLSNlkrLNKLPKNPALYSSFVTSDLGDRIASEtYNANVVKTLTGFKWMGQEMLKEplnglNFVFAYEESYGY--VIDDS---T 409
58**********9977641114678999****************87526999**********9877664322223799******995..45555...5 PP
TIGR01132 409 tdkdGiilallaaeitavtGk...npqqrydelaakyGdpiyaridaaatsaqkarlkklspdevsattlaGdait....akl...tkapGngaaiGG 496
dkdGi +++aae + + ++ ++l +kyG ++ + + ++++k+ k++p + t + i k+ + n +
MMSYN1_0733 410 RDKDGIQASIIAAEACWYYKNqnmTLVDYLNQLYEKYGYYYTTTYNLNFKPEEKDS--KIAPIMKLLRTTGIKQINnlkvVKIedyINGLYNMPSEDL 505
8*************87654430004456789999****988888888888877774..4444443333333333321000222000334457777788 PP
TIGR01132 497 lkvt.tdegwfaarpsGtedvykiyaesfkgeehlkeiekeaeeiv 541
lk+ d++w+a rpsGte kiy + l++ e++ae+i
MMSYN1_0733 506 LKIYlEDKSWIAIRPSGTEPKLKIYFVIV--DSSLQKAENKAEKIY 549
99962689****************96433..334455555555554 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (558 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 163 (0.0363191); expected 89.8 (0.02)
Passed bias filter: 84 (0.0187166); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.24
# Mc/sec: 3338.80
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0733 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0747 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0747.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0747/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0747 [L=217]
Description: punA 4=Probable Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-47 158.3 1.6 8.5e-45 151.0 1.6 2.0 1 TIGR00107 deoD: purine nucleoside phosphorylase
2.9e-19 67.4 0.0 2.1e-17 61.3 0.0 2.1 2 TIGR01718 Uridine-psphlse: uridine phosphorylase
1.3e-08 32.5 0.0 5.3e-08 30.4 0.0 1.9 2 TIGR01719 euk_UDPppase: uridine phosphorylase
8.8e-07 26.8 0.0 1.1e-05 23.2 0.0 2.0 2 TIGR03664 fut_nucase: futalosine hydrolase
5.7e-06 24.0 0.1 0.00012 19.6 0.0 2.0 2 TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase
5.9e-06 24.0 0.0 2.1e-05 22.1 0.0 1.8 1 TIGR03468 HpnG: hopanoid-associated phosphorylase
Domain annotation for each model (and alignments):
>> TIGR00107 deoD: purine nucleoside phosphorylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 151.0 1.6 1.1e-47 8.5e-45 5 223 .. 5 208 .. 2 215 .. 0.85
Alignments for each domain:
== domain 1 score: 151.0 bits; conditional E-value: 1.1e-47
TIGR00107 5 kkgdiadvvllpGdPlrakyiaekfledakevnevrgmlgftGkykgkkisvmGhGmGipsisiyskelikeyevkkiirvGsCGairkkvklkdvii 102
k+ dia++vl++GdP r+k+ ae+ l d k+v+evr+ + +tG yk +k+s GmG psi+iy++el ++++v++iirvG+CG+ ++++k+ vi
MMSYN1_0747 5 KNADIANIVLIAGDPKRTKWAAENLLTDYKLVSEVRNAFVYTGYYKNHKVSFATSGMGQPSIAIYVHELFNNHNVNTIIRVGTCGTYNNNIKIGTVIE 102
6789********************************************************************************************** PP
TIGR00107 103 alkastdskvnrvrfvevdlaaiadfelvklakeaakkkgldvkvGnvfsadlfystdkevldllekygvlavemeaaalyavaaelgkkaltlltvs 200
a +a ++ ++ + + ++ + + ++++ +k nv ++d+fy+ ld+ ++++ v+me+ al+ +a +++kka t+ltvs
MMSYN1_0747 103 AKNAFSEVNIFEPN---KTG-----WQI----NQPSLDLNIGLK-ANVHCSDVFYRLS--KLDI-KEHNLDVVDMESFALFYLANHFNKKAATILTVS 184
**999886543322...222.....222....233344555554.5899******998..5654.56778889************************* PP
TIGR00107 201 dhlvth.ealtaeerqktfkdmie 223
d+l h ++lta++r + +m +
MMSYN1_0747 185 DNLNDHsNDLTAKQREIATLKMYQ 208
****983579*****987766765 PP
>> TIGR01718 Uridine-psphlse: uridine phosphorylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 61.3 0.0 2.8e-20 2.1e-17 7 104 .. 5 104 .. 1 108 [. 0.88
2 ! 4.2 0.0 0.0072 5.4 187 220 .. 159 192 .. 137 214 .. 0.78
Alignments for each domain:
== domain 1 score: 61.3 bits; conditional E-value: 2.8e-20
TIGR01718 7 kksdiqryvilPGdPdrvekiakhldkprk.varnrefvtyvgelkgkpvsvtstGiGgpstaiaveellq.lGadtfirvGttGalqphikvGdvvi 102
k++di ++v++ GdP+r++ a+ l k v++ r+ y+g +k+ vs ++ G+G ps ai v el + ++t irvGt G+ ++ik+G+v+
MMSYN1_0747 5 KNADIANIVLIAGDPKRTKWAAENLLTDYKlVSEVRNAFVYTGYYKNHKVSFATSGMGQPSIAIYVHELFNnHNVNTIIRVGTCGTYNNNIKIGTVIE 102
5789****************998766655516778**9*******************************862689*********************97 PP
TIGR01718 103 at 104
a
MMSYN1_0747 103 AK 104
65 PP
== domain 2 score: 4.2 bits; conditional E-value: 0.0072
TIGR01718 187 yemesatlltlasvrgvraGavlavianrtrdei 220
+mes +l+ la + +a ++l+v n + +
MMSYN1_0747 159 VDMESFALFYLANHFNKKAATILTVSDNLNDHSN 192
68*********************99888665443 PP
>> TIGR01719 euk_UDPppase: uridine phosphorylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.4 0.0 7.1e-11 5.3e-08 33 137 .. 12 108 .. 3 141 .. 0.75
2 ? -0.3 0.0 0.16 1.2e+02 219 250 .. 153 183 .. 141 207 .. 0.78
Alignments for each domain:
== domain 1 score: 30.4 bits; conditional E-value: 7.1e-11
TIGR01719 33 fvclgGtpsRlkafaeylseelglskasdvenlsekedRfa...lykvgpvllvshGmGipsisilLhelikllyyakvkdvvliRiGtsGGi..Gvp 125
+v+++G p+R k ae l + +se + f+ yk v +++ GmG psi+i +hel+ + + ++iR+Gt+G ++
MMSYN1_0747 12 IVLIAGDPKRTKWAAENLLTDY--------KLVSEVRNAFVytgYYKNHKVSFATSGMGQPSIAIYVHELFN-----NHNVNTIIRVGTCGTYnnNIK 96
6777888888776666554333........3333333333311258889999*****************965.....556679********8733699 PP
TIGR01719 126 pGtvvvsseald 137
Gtv+ +++a+
MMSYN1_0747 97 IGTVIEAKNAFS 108
9********986 PP
== domain 2 score: -0.3 bits; conditional E-value: 0.16
TIGR01719 219 elgvrniemessvfaaltskaglkaavvCvtl 250
e+++ ++mes ++ l ++ + kaa + t+
MMSYN1_0747 153 EHNLDVVDMESFALFYLANHFNKKAATI-LTV 183
5566678999999999999999998887.344 PP
>> TIGR03664 fut_nucase: futalosine hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.2 0.0 1.5e-08 1.1e-05 26 87 .. 43 104 .. 22 113 .. 0.87
2 ? 1.4 0.0 0.068 51 176 201 .. 160 185 .. 147 192 .. 0.88
Alignments for each domain:
== domain 1 score: 23.2 bits; conditional E-value: 1.5e-08
TIGR03664 26 egslvsvrrkevtvlvaGvGkvaAAaataaalarapvelvislGiaGgfpgkaevGdlvlad 87
++++ +++++v ++ G+G+++ A+ + + ++++v+ +i +G +G+++++ ++G+++ a+
MMSYN1_0747 43 FVYTGYYKNHKVSFATSGMGQPSIAIYVHELFNNHNVNTIIRVGTCGTYNNNIKIGTVIEAK 104
456777999***********************************************998776 PP
== domain 2 score: 1.4 bits; conditional E-value: 0.068
TIGR03664 176 nMEGaavavaaraagvpvlelRgiSN 201
+ME +a+ + a++++ +++ + ++S
MMSYN1_0747 160 DMESFALFYLANHFNKKAATILTVSD 185
7*************999999999996 PP
>> TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.6 0.0 1.6e-07 0.00012 29 93 .. 41 105 .. 27 117 .. 0.89
2 ? 2.6 0.0 0.027 20 157 203 .. 145 191 .. 127 214 .. 0.78
Alignments for each domain:
== domain 1 score: 19.6 bits; conditional E-value: 1.6e-07
TIGR01704 29 gceittgelegtevillksgigkvaaalsatlllerykpdvvintgsagglahtlkvgdvvvsde 93
+ ++tg ++ +v + sg+g+ + a+ l+++ + +i g+ g +++ +k+g v+ +++
MMSYN1_0747 41 NAFVYTGYYKNHKVSFATSGMGQPSIAIYVHELFNNHNVNTIIRVGTCGTYNNNIKIGTVIEAKN 105
5668******************************************************9986655 PP
== domain 2 score: 2.6 bits; conditional E-value: 0.027
TIGR01704 157 rlekvrarfsdliavemeaaavaqvchqfkvpfvvvralsdvadkes 203
rl+k+ + +l v+me+ a+ + +f+ + ++sd + +s
MMSYN1_0747 145 RLSKLDIKEHNLDVVDMESFALFYLANHFNKKAATILTVSDNLNDHS 191
55666666677888999999999999999999999999998665554 PP
>> TIGR03468 HpnG: hopanoid-associated phosphorylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.1 0.0 2.9e-08 2.1e-05 19 159 .. 51 188 .. 40 197 .. 0.85
Alignments for each domain:
== domain 1 score: 22.1 bits; conditional E-value: 2.9e-08
TIGR03468 19 gegvevllagsgperaaaaaerl.eeagvaglvSfGvAGaLdpaLkpGdlvvpeevraegerl.padsawrrrllealeaalrvsagvlaasdevvss 114
+++v ++ +g+g+ a +++l ++++v+ ++ G++G +++ k G+++ +++ e + + p w+ + + +l + ++a v +++ v
MMSYN1_0747 51 NHKVSFATSGMGQPSIAIYVHELfNNHNVNTIIRVGTCGTYNNNIKIGTVIEAKNAFSEVNIFePNKTGWQIN-QPSLDLNIGLKANVHCSD---VFY 144
589999******999999999999**********************************999997888899888.777776556665555443...344 PP
TIGR03468 115 aaeKaalaaatgAaaVDMESgavaavAaeaglPFlviRviaDpad 159
+ K ++++ +VDMES a A++ + + + i ++D+ +
MMSYN1_0747 145 RLSKLDIKE-HNLDVVDMESFALFYLANHFNKKAATILTVSDNLN 188
555666666.6788****************************876 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (217 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 167 (0.0372103); expected 89.8 (0.02)
Passed bias filter: 83 (0.0184938); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1558.11
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0747 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0771 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0771.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0771/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0771 [L=720]
Description: NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 5=Equivalog Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-285 946.5 11.5 2.2e-285 946.3 11.5 1.0 1 TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase,
4e-159 528.9 1.7 1.4e-158 527.0 1.7 1.7 1 TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, a
5.3e-75 251.1 0.0 6.1e-66 221.2 0.0 2.5 2 TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, aden
2.6e-41 139.7 2.9 7.4e-15 52.4 0.0 4.1 4 TIGR02510 NrdE-prime: ribonucleoside-diphosphate reductase,
Domain annotation for each model (and alignments):
>> TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 946.3 11.5 2e-288 2.2e-285 1 698 [] 16 720 .] 16 720 .] 0.97
Alignments for each domain:
== domain 1 score: 946.3 bits; conditional E-value: 2e-288
TIGR04170 1 dyialnaelnlrdddGkiqldkdkeavdkyfleevnqntvvfdnlkekldylveenyyeeevlekyseeelkelfkeakakkfrfksflsaykfykdy 98
+yi+lna ++ ++ + +++ d +a++ y+++++++++ f++lke+ldyl+e++yy++e+l+kys++++ +l ++a++ + +f+sf++a kf++ y
MMSYN1_0771 16 EYIKLNARSKIFSK-DQDNFQLDVKAAELYLKNYIEPRMKKFSSLKERLDYLLENKYYDSEILNKYSFDQISQLNDYAYSFNHHFPSFMGALKFFNAY 112
5999**99887655.34566778899999********************************************************************* PP
TIGR04170 99 alktndgkkyledyedrvalvaltladGdeekakdlvdeiieqryqPatPtflnaGkkrrGelvscfllrvednlesigrainsalqlskiGGGvall 196
lkt+d + yle y drv ++al+l +G+ +kak+l+++++ +r+qPatPtflna kk+rGe vsc+llr edn+esi r+i+++lqlsk+GGGva++
MMSYN1_0771 113 GLKTFDTTMYLETYTDRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQLSKRGGGVAIC 210
************************************************************************************************** PP
TIGR04170 197 lsklreaGaaikkienaasGvvpvmklledafsyanqlGqrqGaGavylnifhpdilefldtkkenadekvrvktlslGvviPdkffelakenedlyl 294
l++lre G +ik+i + +sG +pvmk+led+f+ya+qlGqrqGaGavy+ ++hpdi++ ldtk+enadek+r+k+lslG+viPd++fela++n+d++l
MMSYN1_0771 211 LTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDMAL 308
************************************************************************************************** PP
TIGR04170 295 fsPydvekeyGkplddidltekydelvaderirkkkinarelleklaelqlesGyPyimfedtvnkana..iegkikmsnlcseilqvseaslynddl 390
fsPydv+k+y kpl+di++teky e++++++i+k++i ar+++ ++ael++esGyPyi+fedtvn+ na ++g+i+msnlcsei+qvs+as+y+ dl
MMSYN1_0771 309 FSPYDVQKVYNKPLSDISITEKYYEMLENPNIKKTYISARKFFLTVAELHFESGYPYILFEDTVNRRNAhdKKGRIIMSNLCSEIVQVSTASEYSSDL 406
******************************************************************9996678************************* PP
TIGR04170 391 eedeigkdiscnlGslnivnvmes.pdfektvetavraltavsdesdiksvPsvkkgnseahaiGlGamnlhgylarekiaygseeavdftniyfmlv 487
++ ++g+di cnlGslni ++m+s ++f++++ a+ al +vs +sd++++Ps++kgn++ ha+GlGamnlhg+la +ki+y+s+eavdftn++f++v
MMSYN1_0771 407 SFVKTGEDICCNLGSLNIDKMMKSgKEFSDSIYNAISALDIVSRNSDLSAAPSIQKGNAQNHAVGLGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTV 504
**********************98457*********************************************************************** PP
TIGR04170 488 nyyalrrsneiakerGetfkdfeksdyasGeyfdkyvsqe...faPktekvkelf..egiaiPtaedwaelkdkveeeGlynqyrlavaPtgsisyin 580
+y a ++sn++a+e e+f+ f++s++a+G++fdky++ e ++P+t++vkelf +++iP++ dw +l ++++++Gl n++++avaPtgsisy+
MMSYN1_0771 505 AYNAFKASNKLAQEF-EKFASFDESRFADGSWFDKYTKCEfdkWTPQTNRVKELFkdYDVQIPSQTDWIQLVEEIKKTGLANSHLMAVAPTGSISYLS 601
*************96.89*******************98722268**********66689************************************** PP
TIGR04170 581 dstssihPivekieerkegkigkvyyPapflaeenleyyk.dayeidaekvidlyaaitkhvdqGlsltlflkdtattrdlnrlqiyafkkGiktlyy 677
++t s++P+v+ +e rkegk+g+vy Pa +++ +n+ yy aye++a +i+++aa+++hvdq +sltlf+ d+attrdlnr+++ afk+G ++yy
MMSYN1_0771 602 SCTPSLQPVVSTVEVRKEGKLGRVYVPAYQINFDNMGYYAmGAYELGADPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNRAYVNAFKQGCSSIYY 699
**************************************9737******************************************************** PP
TIGR04170 678 irlkqlalegteieecvscvl 698
+r +q+ le++e ec +c +
MMSYN1_0771 700 VRIRQDVLENSENYECDACKI 720
*******************76 PP
>> TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 527.0 1.7 1.3e-161 1.4e-158 1 616 [] 102 703 .. 102 703 .. 0.96
Alignments for each domain:
== domain 1 score: 527.0 bits; conditional E-value: 1.3e-161
TIGR02506 1 yaGlkellnryllrkaakkallelpqeaymrvalalasleeketaladaikfyellsrlkislatpvlanagtkksqlaSCfLleveddelesiskai 98
++G+ +++n y l++ ++ + + + +rv++++++l + + ++a+ ++l r++++++t+++a ++ +++++SC+Ll+ ++d++esi ++i
MMSYN1_0771 102 FMGALKFFNAYGLKTFDTT---MYLETYTDRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPTFLNAAKKH-RGEYVSCYLLR-TEDNMESICRTI 194
69***********999775...69999************9999999999999999999999999998887776.9**********.5666******** PP
TIGR02506 99 kevaklskkggGiGlnlsklratgskirgsenkskgiipvlklldssveavnqggkRpgavavylevwHpdieefLelkknngeeerraknlfiglvi 196
+++++lsk+ggG++++l++lr+tgs+i++ + s+g ipv+k+l++s+ +++q g+R+ga avy+ ++Hpdi+++L++k++n++e+ r+k+l++glvi
MMSYN1_0771 195 STSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVI 292
************************************************************************************************** PP
TIGR02506 197 pdlfmkrveedkdwtLfspqdvpeleelyg..eefeeeYerlekekeakkkikvsarelmkkilksavetGepYilfkdavNkhnpnklkgeaikmSN 292
pd+ +++++++kd+ Lfsp+dv+++++ + +++e+Y+++ ++ ++kk+ +sar+ + ++++ ++e+G+pYilf+d+vN+ n ++ k+++i mSN
MMSYN1_0771 293 PDITFELARDNKDMALFSPYDVQKVYNKPLsdISITEKYYEMLENPNIKKT-YISARKFFLTVAELHFESGYPYILFEDTVNRRNAHD-KKGRIIMSN 388
****************************9999999****************.******************************999999.569****** PP
TIGR02506 293 LCtEivqptdeee...........evavCnLasvnlanfvlekeefdfekleeavqlavraldnvidlqnyptaeaaks.nkrrrsiGiGvmgladvl 378
LC+Eivq ++++e e+ +CnL+s+n+ +++ + + ++ +++++a+ ald v ++++++ a++ ++ n++++++G+G+m+l+++l
MMSYN1_0771 389 LCSEIVQVSTASEyssdlsfvktgEDICCNLGSLNIDKMMKSGK-----EFSDSIYNAISALDIVSRNSDLSAAPSIQKgNAQNHAVGLGAMNLHGFL 481
************9************************9555544.....49*************************9999****************** PP
TIGR02506 379 aklglsYeseearalnkrifeaiyyaaikaSveLAkekGafegFeeskyakGllhidtwektieelee...............akteedWeaLrekik 461
a++++ Y+s+ea ++++ +f +++y a+kaS++LA+e f++F es+ a+G + ++++ ++++ + ++++ dW +L e+ik
MMSYN1_0771 482 ATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDESRFADGSWFDKYTKCEFDKWTPqtnrvkelfkdydvqIPSQTDWIQLVEEIK 579
**********************************************************9999999988999************99************* PP
TIGR02506 462 eyGlrnsqllAlaPtassSqltgvtesiePvfsniftkktkkgeflkvNktLvkeleelglweaervgdiveavgsiqpieaiseelkekyktafeld 559
+ Gl ns+l+A+aPt s+S+l+++t+s++Pv+s ++++k+ k +v+++++ +++ + ++ a+el
MMSYN1_0771 580 KTGLANSHLMAVAPTGSISYLSSCTPSLQPVVSTVEVRKEGKL----------------------------GRVYVPAYQINFDNMGYYAM-GAYELG 648
****************************************999............................47899988888888888877.5***** PP
TIGR02506 560 qealiklaaarqkfvdqsiSlnlfleeekevtakkllkllllAwkkGlKTmYYlrvk 616
+i+++aa+q++vdq+iSl+lf+++ + t+++l++ ++ A+k+G+ ++YY+r++
MMSYN1_0771 649 ADPIINIVAAAQQHVDQAISLTLFMTD--KATTRDLNRAYVNAFKQGCSSIYYVRIR 703
***************************..9*************************86 PP
>> TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 221.2 0.0 5.4e-69 6.1e-66 49 497 .. 145 631 .. 139 646 .. 0.85
2 ! 27.1 0.1 3.2e-10 3.6e-07 538 592 .. 642 696 .. 624 701 .. 0.88
Alignments for each domain:
== domain 1 score: 221.2 bits; conditional E-value: 5.4e-69
TIGR02504 49 aeefeellvelkfvpnsptlmnaagtelgqlsacfvlpveddlesIleaakeaaeifksGgGvGynfSelRpkgdvvrgtgGvaSGpvsfmrlfdsvt 146
a+++ + ++ +f p++pt++naa++++g +++c+ l ed++esI +++ ++ ++ k+GgGv + + +lR g+++++ +G +SGp+ m++++++
MMSYN1_0771 145 AKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSF 242
56778889999*************************************************************************************** PP
TIGR02504 147 evvkqggkRRGAqmgilevdHPDieeFIeaKkkeeklaeaklqnfNiSVgvtdeFmeavekddeeyklenprtgeeeeelk................. 227
+ q g+R GA + ++ HPDi + +++K+++ + +++ + + d +e ++ ++++ l p++ + ++
MMSYN1_0771 243 TYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEK-IRIKSLSLGLVIPDITFELARD-NKDMALFSPYDVQKVYNKPlsdisitekyyemlenp 338
*********************************98843.6788888888899988888888.689999999988887766688999999999999998 PP
TIGR02504 228 vkvekevpareLwdkiveaAwksaePGllfldtiNrenpeakkallerinatNPCgEqpll....pyes............CnLgsinLakfvkedad 309
+ ++ + ar+ + ++e ++s+ P +lf dt+Nr+n + + ++ri +N C+E++ + +y+s CnLgs+n++k++k +
MMSYN1_0771 339 NIKKTYISARKFFLTVAELHFESGYPYILFEDTVNRRNAH---DKKGRIIMSNLCSEIVQVstasEYSSdlsfvktgedicCNLGSLNIDKMMKSG-- 431
777889********************************53...34688888888888876522222332333333333444*************88.. PP
TIGR02504 310 aefdleelaeavelatrflDnvidlnkfp.leeieeaakktRriGLGimgladlLiklgipYdSeeavelaeevmevlaeeaykaSaelAkerGafpl 406
+e+ + a+ +lD+v ++ + + i++ + + +GLG m+l+ L++ +i YdS+eav++++ + ++a++a+kaS +lA+e +f
MMSYN1_0771 432 -----KEFSDSIYNAISALDIVSRNSDLSaAPSIQKGNAQNHAVGLGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFAS 524
.....59***************9999875268999*************************************************************** PP
TIGR02504 407 yekskeeeakvlrk...............kkalpkeleelierkklee....................kaekygiRNaalttiAPTGtiSllagtssG 469
+++s+ ++ + + k +e +++k+g+ N++l+++APTG+iS l ++ +
MMSYN1_0771 525 FDESRFADGSWFDKytkcefdkwtpqtnrV----------------KElfkdydvqipsqtdwiqlveEIKKTGLANSHLMAVAPTGSISYLSSCTPS 606
*******99999886666665555543331................2233334444455555666777****************************** PP
TIGR02504 470 iEPvFalvykrkvavggeellevneeve 497
+ Pv + v +rk +g + ++ + ++
MMSYN1_0771 607 LQPVVSTVEVRK--EG-KLGRVYVPAYQ 631
***********6..33.23344444444 PP
== domain 2 score: 27.1 bits; conditional E-value: 3.2e-10
TIGR02504 538 vtasdvspedHvrmqaavqkwvdsaiSKTiNlpsdatvedveavYllawklglKG 592
+ a ++++ ++++aa+q++vd+aiS T + +at+ d++++Y++a+k+g+
MMSYN1_0771 642 MGAYELGADPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNRAYVNAFKQGCSS 696
55677777777899**************************************965 PP
>> TIGR02510 NrdE-prime: ribonucleoside-diphosphate reductase, alpha chain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.4 0.0 6.6e-18 7.4e-15 61 218 .. 148 309 .. 139 317 .. 0.88
2 ! 40.2 0.2 3.2e-14 3.6e-11 220 382 .. 353 521 .. 324 531 .. 0.76
3 ! 6.7 0.0 0.00046 0.52 386 430 .. 578 621 .. 571 630 .. 0.84
4 ! 37.5 0.3 2.1e-13 2.4e-10 482 559 .. 644 719 .. 640 720 .] 0.94
Alignments for each domain:
== domain 1 score: 52.4 bits; conditional E-value: 6.6e-18
TIGR02510 61 ffeylarGkyslatPvfanfGl.drGlPiscaGsyvedsvedileaqaevgmlaknGgGtssylGdvrPrGadisd.ngesngayalaslfdkvinvv 156
++ ++ G + atP f n +rG +sc+ ed++e+i ++ + l+k+GgG + l ++r G++i++ +g s g +++++++
MMSYN1_0771 148 LLKDMMLGRFQPATPTFLNAAKkHRGEYVSCYLLRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNiSGLSSGPIPVMKILEDSFTYA 245
566688899**********87527**************************************************986899***********999999* PP
TIGR02510 157 sqgetrrGefagyvdvehpdleellsiqlenda....vqsllygvevgddwlekliagdsekrarW 218
q r+G a y+ +hpd+ +l+ ++en ++sl g+++ d +e a+d++ +a++
MMSYN1_0771 246 DQLGQRQGAGAVYISAHHPDIISVLDTKRENADekirIKSLSLGLVIPDITFE--LARDNKDMALF 309
***************************99986422237788888888884444..57777777765 PP
== domain 2 score: 40.2 bits; conditional E-value: 3.2e-14
TIGR02510 220 kllksraevGipyllfrdnanekaPqvikdkGidirasnlcteialPsdeee.....sfv.......cilsslnvllydei..kdtdavetlvrflds 303
+ + e G py+lf+d +n + + +kG i snlc ei+ s +e sfv c l sln+ + + + +d++ + ld
MMSYN1_0771 353 TVAELHFESGYPYILFEDTVNRRN--AHDKKGR-IIMSNLCSEIVQVSTASEyssdlSFVktgedicCNLGSLNIDKMMKSgkEFSDSIYNAISALDI 447
566778899***********9765..5566665.6789******988754432233367555555536799**9976543211336888888888877 PP
TIGR02510 304 vldefiekakglayleravrfaeraraiGlGvlGfhsylqsnrialesaeasllnaeiyktikeraeeasrelaeryge 382
v + +l+ + ++ a+GlG + h +l +n+i ++s+ea + + t+ +a +as++la+++
MMSYN1_0771 448 VS-----RNSDLSAAPSIQKGNAQNHAVGLGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEK 521
65.....4556666666666788999**************************************************975 PP
== domain 3 score: 6.7 bits; conditional E-value: 0.00046
TIGR02510 386 legkgrrnatllaiaPtkssalilGqvspsiePlvsnyfvqdsak 430
++ +g n+ l+a+aPt s +++ +ps++P+vs v++ k
MMSYN1_0771 578 IKKTGLANSHLMAVAPTGSISYLS-SCTPSLQPVVSTVEVRKEGK 621
6789999*************9975.789*******9987776655 PP
== domain 4 score: 37.5 bits; conditional E-value: 2.1e-13
TIGR02510 482 faeisqmaiidlaaarqkhidqaqslnlvidadekeskdvnvlvveawkkglkslyyqrseraakafsrdlldckace 559
++e+ ii++ aa q+h+dqa sl l++ ++ ++d+n+ +v+a k+g s+yy r ++ + s + +c ac
MMSYN1_0771 644 AYELGADPIINIVAAAQQHVDQAISLTLFMTD-KATTRDLNRAYVNAFKQGCSSIYYVRIRQDVLENSEN-YECDACK 719
68888899********************9975.999********************************99.9*****6 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (720 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 149 (0.0331996); expected 89.8 (0.02)
Passed bias filter: 106 (0.0236185); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.26
# Mc/sec: 3976.73
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0771 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0772 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0772.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0772/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0772 [L=157]
Description: NrdI 5=Equivalog Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-55 184.4 0.2 2e-55 184.2 0.2 1.1 1 TIGR00333 nrdI: nrdI protein
Domain annotation for each model (and alignments):
>> TIGR00333 nrdI: nrdI protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 184.2 0.2 4.5e-59 2e-55 1 126 [. 23 150 .. 23 151 .. 0.98
Alignments for each domain:
== domain 1 score: 184.2 bits; conditional E-value: 4.5e-59
TIGR00333 1 vyfssksenvkrfveklgfeakrikvditddievdeeyvlivptytggg..teGavPkqvisflnkkknrellrGviasGnkvfGdnfalagdvlskk 96
vyfss+s+n++rf++kl++e++ri+ +++++i+v+++yvl++pty+ggg +eGavPkqvi+fln+k+nr+++rGvi+sGn++fGd+f++ag+++skk
MMSYN1_0772 23 VYFSSISNNTHRFIQKLEIENIRIPYELDQSISVNRDYVLVTPTYSGGGeyVEGAVPKQVIKFLNNKENRSFCRGVISSGNTNFGDTFGIAGPIISKK 120
89**********************************************999*********************************************** PP
TIGR00333 97 lnvPlLykfeLlGtkkdveevqkivtkffq 126
lnvP+Ly+feLlGt+ dv ++++i kf++
MMSYN1_0772 121 LNVPFLYQFELLGTQYDVSQIKQILLKFWE 150
*************************99985 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (157 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 105 (0.0233957); expected 89.8 (0.02)
Passed bias filter: 88 (0.0196078); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1024.81
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0772 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0773 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0773.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0773/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0773 [L=339]
Description: nrdF 4=Probable Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-125 416.6 1.1 1.6e-125 416.5 1.1 1.0 1 TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase,
Domain annotation for each model (and alignments):
>> TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 416.5 1.1 3.6e-129 1.6e-125 2 316 .] 27 339 .] 26 339 .] 0.99
Alignments for each domain:
== domain 1 score: 416.5 bits; conditional E-value: 3.6e-129
TIGR04171 2 kavnWnkledeldkevwekllkqfWldeeiplsnDlksWkelseeekelvkkvltgLtlLDtlqsevGmpaliesveteqekavlnniafmeavHAks 99
++vnWn ++de+d evw++ +++fWl+e+ip+snDl+sW++ls+e+++lv++++tgLtlLDt+q++vG +a+ie+ t++e+ +++n+afm vHA+s
MMSYN1_0773 27 RSVNWNVINDEKDLEVWNRITQNFWLPEKIPVSNDLSSWRSLSSEWQQLVTRTFTGLTLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARS 124
68************************************************************************************************ PP
TIGR04171 100 YssifstllsteeidelfeWveenealqkkaelilevYeeledpellkakvasvllesfLfYsgFylPlylagqgkltnsaeiiklilrDesiHgvyv 197
Y++ifstl+s+e+i+e++eWv ++e+lqk+a++++ +Y+ +dp lk+kva++l+ +fL+Y+gFylP+yl+++gkl n+++ii+lilrD++iH++y
MMSYN1_0773 125 YGTIFSTLCSSEQIEEAHEWVVKTETLQKRAKALIPYYTG-TDP--LKSKVAAALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYS 219
****************************************.899..9*************************************************** PP
TIGR04171 198 glkaqelleklseeeqeelkkevlelleelyeneekyteelYdevgltedvkkfvrYnankalmnlGfealfeeeaeevnpvvlnglstet.knhDfF 294
g+k+q++++kl+ e+q+e+k++v++ll+el++ e++y +elY+ +++++d+ +f Yna k+l+nlG+++ f+ee+++++p ++n+ls+++ +nhDfF
MMSYN1_0773 220 GYKYQKKVAKLPVEKQAEMKEFVFKLLYELIDLETAYLKELYAGFDIVDDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQLSARAdENHDFF 317
*******************************************************************************************9****** PP
TIGR04171 295 skkgngYklgkveeledddfef 316
s++g++Y++g ++e+ed+d+ef
MMSYN1_0773 318 SGNGSSYVMGVSVETEDEDWEF 339
********************97 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (339 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 151 (0.0336453); expected 89.8 (0.02)
Passed bias filter: 126 (0.0280749); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 2434.09
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0773 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0774 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0774.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0774/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0774 [L=94]
Description: secG: preprotein translocase, SecG subunit 5=Equivalog Protein export
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.7e-16 56.9 8.8 4.4e-16 56.7 8.8 1.1 1 TIGR00810 secG: preprotein translocase, SecG subunit
------ inclusion threshold ------
4.1 5.2 9.2 0.24 9.2 1.7 2.1 2 TIGR00327 secE_euk_arch: protein translocase SEC61 complex g
Domain annotation for each model (and alignments):
>> TIGR00810 secG: preprotein translocase, SecG subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.7 8.8 2e-19 4.4e-16 4 73 .] 19 90 .. 16 90 .. 0.95
Alignments for each domain:
== domain 1 score: 56.7 bits; conditional E-value: 2e-19
TIGR00810 4 llilliivavlLivlvLlQsgkgg.glggafgggasqslfg...srgaekfLsrlTavlavlFfilslalalls 73
+ i+++i+a+++i++ LlQ+++++ gl++++gg+ + lf+ +rg +k+Ls ++ vl+++Ffi++l++++++
MMSYN1_0774 19 FEIFIFIIAFIMIAIGLLQNKQSQtGLSALNGGNEE--LFSnskERGLDKTLSIWMLVLGIIFFIIALTISIIT 90
789*****************************9999..***9988*************************9985 PP
>> TIGR00327 secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.4 1.1 0.061 1.4e+02 47 56 .. 24 33 .. 8 37 .. 0.65
2 ? 9.2 1.7 0.00011 0.24 33 57 .. 66 90 .. 63 93 .. 0.86
Alignments for each domain:
== domain 1 score: 0.4 bits; conditional E-value: 0.061
TIGR00327 47 yiIkiiaell 56
+iI i++ +
MMSYN1_0774 24 FIIAFIMIAI 33
5666666655 PP
== domain 2 score: 9.2 bits; conditional E-value: 0.00011
TIGR00327 33 KvtgigiiivGiiGyiIkiiaellk 57
K i ++++Gii +iI + ++
MMSYN1_0774 66 KTLSIWMLVLGIIFFIIALTISIIT 90
667899************9998885 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (94 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 318 (0.0708556); expected 89.8 (0.02)
Passed bias filter: 88 (0.0196078); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 674.94
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0774 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0775 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0775.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0775/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0775 [L=704]
Description: RNase_R: ribonuclease R 5=Equivalog RNA metabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-187 622.5 31.5 2.5e-187 622.4 31.5 1.0 1 TIGR02063 RNase_R: ribonuclease R
1.1e-152 507.6 25.2 1.4e-152 507.3 25.2 1.0 1 TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exor
3e-61 205.2 23.7 4e-61 204.8 23.7 1.0 1 TIGR02062 RNase_B: exoribonuclease II
7.6e-09 32.6 0.1 2.4e-08 30.9 0.1 1.8 1 TIGR00717 rpsA: ribosomal protein bS1
1e-07 28.7 0.9 1e-07 28.7 0.9 1.6 2 TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransf
0.00022 17.7 0.1 0.00044 16.7 0.1 1.4 1 TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/
Domain annotation for each model (and alignments):
>> TIGR02063 RNase_R: ribonuclease R
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 622.4 31.5 3.3e-190 2.5e-187 4 711 .] 2 704 .] 1 704 [] 0.92
Alignments for each domain:
== domain 1 score: 622.4 bits; conditional E-value: 3.3e-190
TIGR02063 4 reeilellkkkkekplslkelakelelkkaeekkalkkllreLekeglvkknrkkklakaeelklvkgtveanrkgfgflkpedeedeedifvakeel 101
+++i+e+lkk +++++sl++l ++ + ++ +k+ l++Lek++ ++ + ++ ++ +e+ kgt++ n kgfgf++ ++ ++ed+f+a +l
MMSYN1_0775 2 ESKIIEILKK-NHHKISLNKLLTYFKALD---YSLVKNYLDQLEKNNNIAISLENNIYLLDEI-YKKGTIKLNPKGFGFINDVNDLTTEDHFIAGVDL 94
789******9.999999999999887766...9***************988877888777776.789**************9998999********** PP
TIGR02063 102 kkalkgdevlvkilekekekdkaeaevikilerakkkivGtfvkeke..iafvepddkk.lkqkilldkekleeaeegdvvlveitkypeknkkaegk 196
++ +++dev+ + ++e+ ++ +a vi++++r+k ++G++ + + + ++p+dk+ + ++++ +++ + ee +++ ++i + + ++k+ +
MMSYN1_0775 95 NNSIHQDEVVYILKQEED--NRLKAIVIDLIKRNKVYLIGEINRSFDkrFLDFIPNDKSfDSFRFVIVNKNEFKYEEFNIIKAKIISCK--ERKIFIR 188
*********988877444..59*******************9876552377789*****6678999999999****************9..569**** PP
TIGR02063 197 vveilGkkddkgidieiiirkheipsefpeevlkeaekipeeve..eeelkgRk..DlrdlplvtIDgedakDlDDAvyvekkkdgnyklvVaIADVs 290
+++i+G+ ++ + i++i ++++i+++f++++l++a++i+ +++ e+e+ +R+ +l ++++vtIDg d+kDlDDA++vek++++nykl VaIADVs
MMSYN1_0775 189 LIKIIGNSKKASDRILAIAEEFDIKTSFDKQTLDNAKQINLSTDklEKEFLKRQnnSLVNKTIVTIDGIDSKDLDDAICVEKLENNNYKLFVAIADVS 286
***************************************98887224555566522799*************************************** PP
TIGR02063 291 hYVkensalDkeAlkrgtSvYlvdrviPMLPekLSngiCSLnpnedrlalvvemeidkkGrvkksevyeavikskarltYeevnkilegkkkleekek 388
++V+ ++ lDkeAl rg+S+Yl ++viPMLP+ LS ++CSLnpn ++l++v+eme+d+++++ +++vye+vi skarl Y+evn+++++k+ +++
MMSYN1_0775 287 YFVRYKTSLDKEALLRGNSTYLANKVIPMLPNILSDDLCSLNPNTKKLVFVCEMEFDNNANMLNKKVYESVIISKARLNYDEVNNYFKTKTWTHD--- 381
*****************************************************************************************997443... PP
TIGR02063 389 aklkeelkeleelakiLkkkrkkrgaidfdskEakiildeegkikeikvrerkeAekliEefMiaANeavaeflekkklpliYRvHekPseekleklk 486
+k k++l+ + el+k L+ + k+g+i+fd++E kiild++ ++++ik+++ +AekliE+fM+++Neavae + +k+lp++YR+H+kP+e++l +
MMSYN1_0775 382 DKTKKMLDIAYELYKKLEDLKAKKGTISFDVREPKIILDKNLNVIDIKTKTADQAEKLIEQFMVSCNEAVAELIYQKDLPFLYRNHNKPDEDELINWY 479
567*********************************************************************************************** PP
TIGR02063 487 eflkelglklkkgtlekiqpkalskll....ekvkgrpeeelietllLRsmkkAkYsaeniGHFGLalekYtHFTSPIRRYpDLivHrllkkalekee 580
+ lk++g++ k ++++ ++p +++ l e++k++ e el+++ lLR m kAkY eniGHFGLa++ YtHFTSPIRRY DL+vHr lk++l ++
MMSYN1_0775 480 KSLKTFGINPKLTNKQVLDPIFINHTLsqikEQIKDETEVELLNISLLRYMDKAKYGLENIGHFGLASDCYTHFTSPIRRYSDLLVHRYLKQYLITK- 576
*********99877777777665555411116778889999******************************************************66. PP
TIGR02063 581 klskekeekleakleeiaehssktErradeaerdvndlkkaeymeekiGeefegvissvtsfGlFveLeentieGLvhissLkddyyefdeknlalvG 678
+l+k + e+ ++ ++++++ +++tE + +e+er+v+++ +eym +k+ +++ + is+v +fG+F++L++ +eGLvhis+++ d ++de+n l+
MMSYN1_0775 577 DLEKTSLENNTNYVNKVSNIINDTETKSVECEREVIKACMCEYMLNKVNNTYTATISAVLKFGIFIQLDN-LVEGLVHISNMNSDL-VYDETNRILI- 671
7888888999************************************************************.************885.8999999888. PP
TIGR02063 679 ertgkvfrlGdevkvkvvevdkeekkidfelve 711
+ + +r+G++vkvk+++vd +++ idf+l+e
MMSYN1_0775 672 KPDNTYYRMGQKVKVKLINVDIKKRTIDFVLIE 704
567789*************************86 PP
>> TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 507.3 25.2 1.8e-155 1.4e-152 18 657 .] 63 703 .. 49 703 .. 0.91
Alignments for each domain:
== domain 1 score: 507.3 bits; conditional E-value: 1.8e-155
TIGR00358 18 kGvvkatekgfgFlrvddd.dkkdyfippeqlkkvlhGDlvlaqilskkekerreaevvrileraltrivgkfllekdfg.lkvvpDdprlksdilvn 113
kG++k++ kgfgF++ ++d +d fi+ +l++ +h D v il+++e +r +a v+ +++r ++ ++g++ d+ l +p d+++ s +v
MMSYN1_0775 63 KGTIKLNPKGFGFINDVNDlTTEDHFIAGVDLNNSIHQDEVVY-ILKQEEDNRLKAIVIDLIKRNKVYLIGEINRSFDKRfLDFIPNDKSFDSFRFVI 159
8*************9655427889****************976.667777788*******************99988866699*********999999 PP
TIGR00358 114 kakvknelkegdkvvvelkeyplkrnlakaeieqilgnnddelievkvilakheivkeapdaveqqaaklq..eeveeea..kktRedLtdlalVTiD 207
+ kne+k + +++ k + k+ ++ ++ +i+gn ++ + +i ++ +i++ + ++ ++a++ + ++ e++ k++ + L + ++VTiD
MMSYN1_0775 160 VN--KNEFKYEEFNIIKAKIISCKERKIFIRLIKIIGNSKKASDRILAIAEEFDIKTSFDKQTLDNAKQINlsTDKLEKEflKRQNNSLVNKTIVTID 255
88..88999999999999999999999999********************99999988887766555543300333344411555567********** PP
TIGR00358 208 sedakDlDDAvyvkkladkgfkLvVaIADvsaYvaenseldkeAkergssvYlpefviPmlPeeLSnelCSLnpnekRlvlvCeltidakgritekel 305
+ d+kDlDDA+ v+kl+++++kL+VaIADvs++v+ +++ldkeA rg+s Yl + viPmlP+ LS++lCSLnpn k+lv vCe+++d+++++ +k++
MMSYN1_0775 256 GIDSKDLDDAICVEKLENNNYKLFVAIADVSYFVRYKTSLDKEALLRGNSTYLANKVIPMLPNILSDDLCSLNPNTKKLVFVCEMEFDNNANMLNKKV 353
************************************************************************************************** PP
TIGR00358 306 yeavikskarltYdkVsdiLedddelkeeyetlveqlkelaklsqllaekRkkrgaidlekketkvvldeegkveeieaeerrkAekliEelmivANi 403
ye+vi skarl Yd+V+++ + + + ++ +++ ++l +++l++ l++ + k+g+i+++ +e k++ld++ +v++i++++ ++AekliE++m+ N+
MMSYN1_0775 354 YESVIISKARLNYDEVNNYFKTK-TWTHD-DKTKKMLDIAYELYKKLEDLKAKKGTISFDVREPKIILDKNLNVIDIKTKTADQAEKLIEQFMVSCNE 449
*******************9876.57776.7899**************************************************************** PP
TIGR00358 404 aaArvlekkkealiyrvHekpskkklqsllealaelklt...lekvsaenvttrdiaalLeee.kdrpeeelletlllRslkkAeykveplgHFglgl 497
a+A+ + +k +++yr H+kp+++ l + + l +++++ ++k ++ + ++ ++++e+ kd+ e ell++ llR++ kA+y e++gHFgl++
MMSYN1_0775 450 AVAELIYQKDLPFLYRNHNKPDEDELINWYKSLKTFGINpklTNKQVLDPIFINHTLSQIKEQiKDETEVELLNISLLRYMDKAKYGLENIGHFGLAS 547
*************************************98554444455556666666666655379999***************************** PP
TIGR00358 498 eeYahfTSPIRrYpDlivHRlikavlakeekttdtereklqeelekiaeevsdterrareaeRdvaDwlkaeylsdkvgeeFegvissvtrfGlfvrl 595
+ Y+hfTSPIRrY+Dl vHR +k +l+++ +t e+ ++ ++k+ + ++dte + e+eR+v +ey+++kv +++ + is+v +fG+f++l
MMSYN1_0775 548 DCYTHFTSPIRRYSDLLVHRYLKQYLITK-DLEKTSLENNTNYVNKVSNIINDTETKSVECEREVIKACMCEYMLNKVNNTYTATISAVLKFGIFIQL 644
****************************9.6666777899999******************************************************* PP
TIGR00358 596 dengidglikistlendyyvfdkeklaligkkegkvykigDrvevkleevkleersiilelv 657
d n ++gl++is ++ d v+d+ + ++ +k +++ y++g +v+vkl +v+ ++r i++ l+
MMSYN1_0775 645 D-NLVEGLVHISNMNSDL-VYDETN-RILIKPDNTYYRMGQKVKVKLINVDIKKRTIDFVLI 703
9.9***********9996.555554.566788889***********************9886 PP
>> TIGR02062 RNase_B: exoribonuclease II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 204.8 23.7 5.3e-64 4e-61 21 642 .. 61 698 .. 41 700 .. 0.81
Alignments for each domain:
== domain 1 score: 204.8 bits; conditional E-value: 5.3e-64
TIGR02062 21 rveGvvkatdkgfGfle.vd..akksyfipPpsmkkvmhGdkivavikkekd.revaePeeliepfltrfvgkvkl.kdkk.lavlpdhPllkdlika 112
++G++k kgfGf++ v+ + + +fi+ ++ + +h d +v ++k+e+d r +a +li++ ++g ++ +dk+ l +p+ +++ +
MMSYN1_0775 61 YKKGTIKLNPKGFGFINdVNdlTTEDHFIAGVDLNNSIHQDEVVYILKQEEDnRLKAIVIDLIKRNKVYLIGEINRsFDKRfLDFIPNDKSFD---SF 155
478************963552235679********************998762678999***************9856776344555554444...44 PP
TIGR02062 113 rakkslkeefqeGdwvvaklkrhplkgdrif..yaelsqkivkaddklvPww......vtlarhelerkepkgvedeelkddkslred..ltaldfvt 200
r k+ef+ ++ + k k k+ +if ++++ + ka d+++ ++ ++ l++ + ++++l+++ +r++ l + vt
MMSYN1_0775 156 RFVIVNKNEFKYEEFNIIKAKIISCKERKIFirLIKIIGNSKKASDRILAIAeefdikTSFDKQTLDNAKQINLSTDKLEKEFLKRQNnsLVNKTIVT 253
55555566888888877777777777777662245666777889999876431111113455666777777777788888887776553378889*** PP
TIGR02062 201 idsestkdlddalyieelangdlklivaiadPtayiaeeskldkaakkrgftnylPGfniPmlPrelsdelcslianevrPvlacsitiskdGnitdk 298
id+ ++kdldda+ +e+l+n+++kl vaiad + +++ + ldk+a rg + yl iPmlP lsd+lcsl++n ++ v++c ++ +++ n+ +k
MMSYN1_0775 254 IDGIDSKDLDDAICVEKLENNNYKLFVAIADVSYFVRYKTSLDKEALLRGNSTYLANKVIPMLPNILSDDLCSLNPNTKKLVFVCEMEFDNNANMLNK 351
**********************************************************************************************9987 PP
TIGR02062 299 ieffaatikskaklvydkvsdwlekassawqPeseeiaqqvrllaqlskarikwrkthallfkdrpdyrfelsekgevedikaekrrianriveeami 396
+ ++i ska+l yd+v ++++++ w +++++ + ++l k+ + + ++ + d + + +l ++ +v dik ++ a++++e+ m+
MMSYN1_0775 352 K-VYESVIISKARLNYDEVNNYFKTKT--WTH-DDKTKKMLDIAYELYKKLEDLKAKKGTISFDVREPKIILDKNLNVIDIKTKTADQAEKLIEQFMV 445
5.6677889**************9998..998.678899999999**********9999999999********************************* PP
TIGR02062 397 ianicaakvlkeklgfGifnthaGfdkkklenvvellkanga.....lkvdveelatleGfcklrrele.aletdyldsrirryqsfaeissepaPhf 488
n + a+++ +k ++ h d+ +l n + lk+ g +k + + + ++++ +++ e + l+ + ry+ a+++ e hf
MMSYN1_0775 446 SCNEAVAELIYQKDLPFLYRNHNKPDEDELINWYKSLKTFGInpkltNKQVLDPIFINHTLSQIKEQIKdETEVELLNISLLRYMDKAKYGLENIGHF 543
*****9999887777779*****************999998764443444445566678899***9996267889*********************** PP
TIGR02062 489 alGleeyatwtsPirkysdminhrllkavikketavkkPq.......edvkvklaekrrrnrlaerdvadwlyarlladkeaketrfeaeivdvsraG 579
+l + y+ +tsPir+ysd++ hr lk + + +k+ ++v+ ++++ + er+v + ++ +k+ ++ + a i v + G
MMSYN1_0775 544 GLASDCYTHFTSPIRRYSDLLVHRYLKQYLITKDLEKTSLenntnyvNKVSNIINDTETKSVECEREVIKACMCEYMLNKV--NNTYTATISAVLKFG 639
***************************9876655444432011111145666677778888889*************9997..6789*********** PP
TIGR02062 580 lrvrllenGasvfiPaallhdvkeelelnqeegtvlik.gelvykigdlievvltevreetrsi 642
+ ++l +n + + + +++ +l++++ + ++lik ++++y++g ++v+l +v ++r+i
MMSYN1_0775 640 IFIQL-DNLVEGL---VHISNMNSDLVYDETN-RILIKpDNTYYRMGQKVKVKLINVDIKKRTI 698
***97.6654444...3577788888876655.56665278899**************999987 PP
>> TIGR00717 rpsA: ribosomal protein bS1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.9 0.1 3.2e-11 2.4e-08 271 339 .. 623 699 .. 618 703 .. 0.75
Alignments for each domain:
== domain 1 score: 30.9 bits; conditional E-value: 3.2e-11
TIGR00717 271 kvgkkikgkvtnladyGvfveieegiEGlvhvsEls....Wekkn...skPsk.vvkvGdevevkvleideerrrvs 339
kv++ ++ ++++ ++G+f+++ + +EGlvh+s ++ +++ n +kP++ + ++G++v+vk++++d ++r +
MMSYN1_0775 623 KVNNTYTATISAVLKFGIFIQLDNLVEGLVHISNMNsdlvYDETNrilIKPDNtYYRMGQKVKVKLINVDIKKRTID 699
67888899999999999999999999999999988623223333322357754278999999999999999999886 PP
>> TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.6 0.6 0.83 6.2e+02 256 302 .. 197 240 .. 159 266 .. 0.41
2 ! 28.7 0.9 1.4e-10 1e-07 596 681 .. 599 696 .. 579 701 .. 0.77
Alignments for each domain:
== domain 1 score: -3.6 bits; conditional E-value: 0.83
TIGR03591 256 qereealeevkeevleelaeeeeeeeeeeeekeikellkelekklvR 302
++ ++++ ++ ee+ +++ + +++ +++k+i+ ++lek+ ++
MMSYN1_0775 197 KKASDRILAIAEEFDIKTSFD---KQTLDNAKQINLSTDKLEKEFLK 240
222333333333332222222...12222333333333333333332 PP
== domain 2 score: 28.7 bits; conditional E-value: 1.4e-10
TIGR03591 596 aadkeaaekakklieeitae...vevgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvl.........kegdevkvkvleidkkgr 681
++++++e +++i++ + e +v+++y+++++ + +fg+f++l + +glvhiS+++++ v + ++ + ++g++vkvk++++d k r
MMSYN1_0775 599 DTETKSVECEREVIKACMCEymlNKVNNTYTATISAVLKFGIFIQLDNLVEGLVHISNMNSDLVYDETNRIlikpdntyyRMGQKVKVKLINVDIKKR 696
55677778888888888765222588999******************************99877554443212222222289***********97765 PP
>> TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.7 0.1 5.9e-07 0.00044 622 712 .. 597 693 .. 582 700 .. 0.80
Alignments for each domain:
== domain 1 score: 16.7 bits; conditional E-value: 5.9e-07
TIGR02696 622 igaadgdsaeaaraainai.anptlpevgerflgtvvkttafgafvsllpgkdgllhiseirk.l..adgkrv..ekvedvlsvgekikveiadidd 712
i+ ++++s e r+ i a ++ l +v + + t+ fg f+ l +gl+his++ l + +r+ + + +g+k+kv++ ++d
MMSYN1_0775 597 INDTETKSVECEREVIKACmCEYMLNKVNNTYTATISAVLKFGIFIQLDNLVEGLVHISNMNSdLvyDETNRIliKPDNTYYRMGQKVKVKLINVDI 693
677889999999999998615667899*********************************97434224556651133445679*********99995 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (704 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 304 (0.0677362); expected 89.8 (0.02)
Passed bias filter: 75 (0.0167112); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.26
# Mc/sec: 3888.36
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0775 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0776 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0776.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0776/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0776 [L=148]
Description: smpB: SsrA-binding protein 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-53 179.1 14.2 1.2e-53 179.0 14.2 1.0 1 TIGR00086 smpB: SsrA-binding protein
Domain annotation for each model (and alignments):
>> TIGR00086 smpB: SsrA-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 179.0 14.2 2.7e-57 1.2e-53 2 143 .. 6 147 .. 5 148 .] 0.96
Alignments for each domain:
== domain 1 score: 179.0 bits; conditional E-value: 2.7e-57
TIGR00086 2 iakNkkakfdYeilekleaGivLkGsEvKsiragkvslkdayviikkgevfllnlsiaeykagslln.hderrkrkLLlhkkeikklkkkvkekgltl 98
i+kNkka+f+Yei+++++aGivL+G E+Ksir+++vs+++a+v i+k+e+++ln+++++y+++++++ +e+r+rkLLlhkkei k+ +k+k+++lt+
MMSYN1_0776 6 IVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMNVKKYQFANYIKgLEETRTRKLLLHKKEIIKILNKIKQENLTI 103
89***********************************************************9999874699*************************** PP
TIGR00086 99 vplklyfkekgkvKveialakgkklhDKResikkrdakrelkral 143
+p+klyfk + +vK+eialakgkklhDKR++ikkrd++r+ + +
MMSYN1_0776 104 IPVKLYFK-NDYVKLEIALAKGKKLHDKRQTIKKRDTERKELKDY 147
********.588**************************9977765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (148 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 306 (0.0681818); expected 89.8 (0.02)
Passed bias filter: 74 (0.0164884); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1118.60
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0776 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0777 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0777.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0777/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0777 [L=161]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (161 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 340 (0.0757576); expected 89.8 (0.02)
Passed bias filter: 126 (0.0280749); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1216.86
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0777 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0778 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0778.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0778/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0778 [L=83]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.0024 14.9 8.3 0.0028 14.6 8.3 1.1 1 TIGR04370 glyco_rpt_poly: oligosaccharide repeat unit polyme
------ inclusion threshold ------
0.016 12.5 0.2 0.039 11.3 0.1 1.6 1 TIGR03943 TIGR03943: TIGR03943 family protein
0.083 11.6 7.9 0.063 12.0 2.4 2.4 2 TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain
Domain annotation for each model (and alignments):
>> TIGR04370 glyco_rpt_poly: oligosaccharide repeat unit polymerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 8.3 1.9e-06 0.0028 42 113 .. 8 79 .. 2 82 .. 0.72
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 1.9e-06
TIGR04370 42 etyliiilgilifilgslflslskkskkrktkkkklskesisliilkkfllilllliliillllfyllslig 113
+t li+ lg+l f + +++l l+ + k+++++++ +++ + +++ + f+++ ++l+++++ +lf+++ +i
MMSYN1_0778 8 KTELIVNLGVLGFGILFILLGLFLFWKQKNKNRYGFENQNRESKNAWEFVKKNFYLLVLTIGFLFIITAIIT 79
566677777777776666666666655666666666666665589999999999999999999999988875 PP
>> TIGR03943 TIGR03943: TIGR03943 family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.1 2.6e-05 0.039 20 73 .. 20 75 .. 7 79 .. 0.64
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 2.6e-05
TIGR03943 20 aavvllllalvqllrdvrekeeea...ehhhehktklk.rrlvylllllpillgllvp 73
+++++ll+l+ +++ ++++++ ++++e+k+ ++ + ll+l+i ++++++
MMSYN1_0778 20 FGILFILLGLFLFWK--QKNKNRYgfeNQNRESKNAWEfVKKNFYLLVLTIGFLFIIT 75
58999**********..33333336774444444444414455666666666666664 PP
>> TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.0 2.4 4.2e-05 0.063 13 34 .] 15 38 .. 12 38 .. 0.75
2 ? 2.6 0.3 0.039 59 14 25 .. 66 77 .. 58 83 .] 0.56
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 4.2e-05
TIGR01167 13 llllGl..lllglaglllrkrkkk 34
l +lG+ l+++l+++l++k k+k
MMSYN1_0778 15 LGVLGFgiLFILLGLFLFWKQKNK 38
4445555499999******99987 PP
== domain 2 score: 2.6 bits; conditional E-value: 0.039
TIGR01167 14 lllGllllglag 25
l +G+l++ a+
MMSYN1_0778 66 LTIGFLFIITAI 77
445555554444 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (83 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 217 (0.0483512); expected 89.8 (0.02)
Passed bias filter: 71 (0.01582); expected 89.8 (0.02)
Passed Vit filter: 16 (0.00356506); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 567.58
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0778 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0779 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0779.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0779/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0779 [L=745]
Description: ptsG 4=Probable Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-110 367.1 33.1 1.1e-54 183.9 11.9 3.0 2 TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC
3.3e-93 310.9 22.9 6.1e-93 310.0 22.9 1.4 1 TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-spe
1e-82 276.3 19.0 5.3e-47 158.5 0.6 2.1 2 TIGR02004 PTS-IIBC-malX: PTS system, maltose and glucose-spe
2.2e-75 251.8 16.6 5.7e-47 158.1 0.3 2.2 2 TIGR02005 PTS-IIBC-alpha: PTS system, alpha-glucoside-specif
3.2e-64 215.3 13.3 1.9e-32 110.4 0.1 2.1 2 TIGR02003 PTS-II-BC-unk1: PTS system, IIBC component
6.5e-51 171.3 15.6 5e-33 112.6 6.8 2.4 2 TIGR00852 pts-Glc: PTS system, maltose and glucose-specific
9e-15 52.2 20.8 1.5e-11 41.6 0.3 3.2 3 TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC
2.7e-12 43.9 0.2 2.7e-12 43.9 0.2 3.5 3 TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specif
1.1e-11 42.9 0.2 1.1e-11 42.9 0.2 2.1 2 TIGR00826 EIIB_glc: PTS system, glucose-like IIB component
4.7e-09 33.6 0.2 4.7e-09 33.6 0.2 3.3 3 TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC
------ inclusion threshold ------
1 6.5 16.3 2 5.5 16.3 1.5 1 TIGR00601 rad23: UV excision repair protein Rad23
6.7 2.8 16.3 9.2 2.4 16.3 1.2 1 TIGR00934 2a38euk: potassium uptake protein, Trk family
Domain annotation for each model (and alignments):
>> TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 183.9 11.9 3e-57 1.1e-54 3 238 .. 20 260 .. 18 285 .. 0.89
2 ! 181.9 13.2 1.2e-56 4.6e-54 262 501 .. 337 609 .. 316 610 .. 0.79
Alignments for each domain:
== domain 1 score: 183.9 bits; conditional E-value: 3e-57
TIGR02002 3 kifgqlqkiGkalmlpvavlpvaGlllglGnavqneqlleflpllkaeyiqlvakvmeeaGeiifdnlpllfavGvalGlakndGvaalaalvgylil 100
+i+ +l k+ ka++lp+a+lp+aG++lg+G+a+ p +++ + + kvm + G++ f+nlp+lf + val ++k+ Gvaa++a+vg+l++
MMSYN1_0779 20 NIMPTLSKLSKAFLLPIALLPIAGVFLGVGAAI-----AANTP--EQSALWFIGKVMGNMGDVCFGNLPVLFCISVALAYTKDSGVAAITAVVGFLVF 110
678899**************************9.....56678..6666778********************************************** PP
TIGR02002 101 nktlgvvag...ltkkeieseiaa............yasvlgietlqtGvfGGiivGavaaylynrfyniklpeylGffaGkrfvpiitalvaivvGi 183
n + + + ++++++++ s +gi l+tGv+GGi+vGa+aa +yn+f++ +lp + ff+G ++vpiit ++ i +
MMSYN1_0779 111 NGVQAPLFTqgqVQSDKVSE---YsllwykhvsnslTGSNMGILSLNTGVLGGIFVGAIAAKCYNKFHQTQLPTAISFFSGTKLVPIITFVAVIPLSF 205
*9887654301133332222...14579999999888899********************************************************** PP
TIGR02002 184 vlsfvwppvqdalntlskwlieknkvvavfifGlierslipfGlhhifnapfffe 238
+++++wp ++ +ln++ + + if ++ersl+pfGlhh+f+ap+++
MMSYN1_0779 206 IFMMAWPVIGLGLNKFGQVSGTLPYGTDSLIFEIVERSLVPFGLHHVFYAPLWWT 260
******************99999999999**********************9975 PP
== domain 2 score: 181.9 bits; conditional E-value: 1.2e-56
TIGR02002 262 kdgveltagaflsGkflfkmfglpaaalaiyheakpekkklvgGlllsaaltsfltGiteplefsflfvapil.yvihallaGlsflimallevkigl 358
++ + g f sGkf f++ glpaaala++ +a e+++ v G+ saa+t fltGitep+e++flfvap l y +h+ la ++f + l+ +i+
MMSYN1_0779 337 VEKLGINLGRFQSGKFGFMLLGLPAAALAMWLAAPKENRQQVFGIYFSAAFTCFLTGITEPIEYTFLFVAPWLfYGVHMPLASIAFWATGALQTHITQ 434
45666778***************************************************************77368********************** PP
TIGR02002 359 tfsgGlidfllygllsk....re..alwlviivGlvyaiiyyflfrflikkldlktpGreeaeaek..................kaaaease.....l 427
t sgG+id++++g+++ + +++ v+ v +v+a iy+ f flik +++ktpGr+ + + k k ++++++ l
MMSYN1_0779 435 TVSGGIIDYIVFGIIPFisgaMKpiSAFGVLGVAVVLAPIYFCAFYFLIKLFNVKTPGRDGNAEAKlytkadfkaskglnvdgsKMSSSTDDkeqarL 532
*************98862112231134445556678999********************865432211111111111111111112222222222224 PP
TIGR02002 428 ..avevvaalGgkeniksldacitrlrvsvkdikkvdkaklkklG.aagvlvvGnnvqaifGpksdtlkseiqdila 501
a ++++ lGg eni ++d+c +rlr+ v d kk d + +k lG ++g lv Gnn+q ++G + + +k +q++l+
MMSYN1_0779 533 akAAAIIEYLGGEENIVDVDSCASRLRLTVVDAKKADIDGIKSLGgTTGALVKGNNIQIVYGGEQEAIKPRMQKLLE 609
2246799*************************************73679************************9885 PP
>> TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 310.0 22.9 1.6e-95 6.1e-93 5 474 .. 25 604 .. 21 605 .. 0.82
Alignments for each domain:
== domain 1 score: 310.0 bits; conditional E-value: 1.6e-95
TIGR01998 5 lqklGkalmlPiavlPvaalllriG..........qadlllaaflaaaGdailenlallfaiGvaiglskdkdGaaalagvvayfvltkvlep..... 87
l kl ka++lPia+lP+a ++l++G +a + + +++ + Gd+ + nl++lf i va++++kd +G aa+ +vv++ v v p
MMSYN1_0779 25 LSKLSKAFLLPIALLPIAGVFLGVGaaiaantpeqSALWFIGKVMGNMGDVCFGNLPVLFCISVALAYTKD-SGVAAITAVVGFLVFNGVQAPlftqg 121
679**********************99999976633334445667777********************998.699***********998776688888 PP
TIGR01998 88 .........aklaalktie...seinlafsalkanvlvGilaGliaaalynrfsevklpealaffsGkrlvPilaglvalvlallllliWpaveaaid 173
+l k ++ + n+++ +l++ vl Gi++G iaa+ yn+f++++lp+a++ffsG +lvPi++ ++++ l++++++ Wp++ +++
MMSYN1_0779 122 qvqsdkvseYSLLWYKHVSnslTGSNMGILSLNTGVLGGIFVGAIAAKCYNKFHQTQLPTAISFFSGTKLVPIITFVAVIPLSFIFMMAWPVIGLGLN 219
8887666554444556666323456999999999*****************************************999999***************** PP
TIGR01998 174 alaeaisalG.alGavvygllnrlliptGlhhvlnsvfWfdviG.................................................indik 221
+++++ +l + + ++ ++ r l+p Glhhv+ + +W+ +G
MMSYN1_0779 220 KFGQVSGTLPyGTDSLIFEIVERSLVPFGLHHVFYAPLWWTSAGgsiaegfnnlskqseaiqkvfvdsynslhgthhtklqeiidivqknkelW---- 313
***8766654135689*************************9999*******************************999888766533333330.... PP
TIGR01998 222 nalag.................vsgdlnrikggdkiaGvfmaGffPimmfGlPaaalamylaakaerkkkvaglllsvalasfltGvtePlefsfmfl 302
++ + +d++++ G+f++G f m++GlPaaalam+laa++e++++v g+ +s+a+++fltG+teP+e++f+f+
MMSYN1_0779 314 ---GAvgdqiisqrvighlnilNFTDVEKLG---INLGRFQSGKFGFMLLGLPAAALAMWLAAPKENRQQVFGIYFSAAFTCFLTGITEPIEYTFLFV 405
...3356677777744333222223333332...367************************************************************* PP
TIGR01998 303 apvl.yvlhalltGlslvvaalldvkagfsfsaGlidyvlsfrla.....lanqa.llllvvGlvffalyyvvfrlvikkfnlktpGrededeev... 390
ap l y +h l +++ + l+++ + + s+G+idy++ + +++ + + +l v +v++ +y+ f + ik fn+ktpGr+ ++e
MMSYN1_0779 406 APWLfYGVHMPLASIAFWATGALQTHITQTVSGGIIDYIVFGIIPfisgaMKPISaFGVLGVAVVLAPIYFCAFYFLIKLFNVKTPGRDGNAEAKlyt 503
*987367*******************************986555411110333222556777789999********************6554444466 PP
TIGR01998 391 ...............eteaaeaskeds.....qlakqilaalGGadnlssidaCitrlrltlkdtsvvdekalkalGakGvvklgkknlqvilGplae 468
++++++ + + +a+ i++ lGG++n++ +d+C+ rlrlt++d +++d +k lG + + + +n+q++ G + e
MMSYN1_0779 504 kadfkaskglnvdgsKMSSSTDD---KeqarlAKAAAIIEYLGGEENIVDVDSCASRLRLTVVDAKKADIDGIKSLGGTTGALVKGNNIQIVYGGEQE 598
77777788887654422223333...23345667889***************************************98877788889********999 PP
TIGR01998 469 ivadel 474
+ +
MMSYN1_0779 599 AIKPRM 604
997766 PP
>> TIGR02004 PTS-IIBC-malX: PTS system, maltose and glucose-specific IIBC component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 122.2 12.0 1.4e-38 5.3e-36 7 248 .. 24 267 .. 18 275 .. 0.85
2 ! 158.5 0.6 1.4e-49 5.3e-47 249 516 .. 320 607 .. 293 608 .. 0.83
Alignments for each domain:
== domain 1 score: 122.2 bits; conditional E-value: 1.4e-38
TIGR02004 7 flqglgktfmlpvallafsgillgvgsslsseavkeaiaflkkeafklvftfmakiglvafiylpvlfavaiplglareekgvaafsgfvgyvalnla 104
l l k+f+lp+all ++g++lgvg+++++++ +++a+ ++ + m ++g v f lpvlf +++ l + ++ gvaa++ vg+ ++n
MMSYN1_0779 24 TLSKLSKAFLLPIALLPIAGVFLGVGAAIAANTP-------EQSALWFIGKVMGNMGDVCFGNLPVLFCISVALAYT-KDSGVAAITAVVGFLVFNGV 113
57889*********************99887654.......5678889999**********************9986.689***************88 PP
TIGR02004 105 infyltakgvlvede........kaveag.vadvlgiqsidtgllgavvvgvivaklhrrfytvklpdalaffggarfvpiisalvlavvglliplvw 193
+t+ +v+ ++ k+v + ++ +gi s++tg+lg++ vg i ak +++f+ ++lp a++ff+g+++vpii+ + + + ++ + w
MMSYN1_0779 114 QAPLFTQGQVQSDKVseysllwyKHVSNSlTGSNMGILSLNTGVLGGIFVGAIAAKCYNKFHQTQLPTAISFFSGTKLVPIITFVAVIPLSFIFMMAW 211
77777777766655311111111222222356679************************************************99999999999**** PP
TIGR02004 194 plfaalisaigrvieragvfg..pllfgsgerlllpiglhhilvalirfteaggsav 248
p++ + ++ g+v ++ +g l+f er l p+glhh++ a + +t aggs +
MMSYN1_0779 212 PVIGLGLNKFGQVSGTLP-YGtdSLIFEIVERSLVPFGLHHVFYAPLWWTSAGGSIA 267
************987654.442279*****************************975 PP
== domain 2 score: 158.5 bits; conditional E-value: 1.4e-49
TIGR02004 249 vagkevsgalnifyaeldcaaaisavpeataflsqgkmatflgglpgaalamyhcarpenrskikallvsgvvacvvggitepleflflfvapll.yl 345
+ ++v g lni+ + ++ + + f s gk+ +l glp+aalam+ +a +enr+++ ++ s +c ++gitep+e+ flfvap+l y
MMSYN1_0779 320 IISQRVIGHLNIL----NFTDVEKLGINLGRFQS-GKFGFMLLGLPAAALAMWLAAPKENRQQVFGIYFSAAFTCFLTGITEPIEYTFLFVAPWLfYG 412
5667788888875....33344444456677765.9**********************************************************9356 PP
TIGR02004 346 vhailvglgflvmallgvvignt.dgnlidflvfgvl...qgtat..kwylvlvvaaiwfvvyyfvfkfaitkfdlktpgred............... 422
vh+ l+ + f + l+ i +t g++id++vfg++ g++ + vl va + +y+ f f i f++ktpgr+
MMSYN1_0779 413 VHMPLASIAFWATGALQTHITQTvSGGIIDYIVFGIIpfiSGAMKpiSAFGVLGVAVVLAPIYFCAFYFLIKLFNVKTPGRDGnaeaklytkadfkas 510
*******************9988579*********963325665422468889999999999999*****************9777777777777666 PP
TIGR02004 423 ....vddaeeaeeqeaaakeea..............gydaaavlaalggkenirsldncitrlrlsvadaekvddaklkklgalgvvkldahnvqvvi 502
vd + aaa+++ lgg+eni +d c +rlrl+v da+k d + +k lg + ++n+q+v
MMSYN1_0779 511 kglnVD---------------GskmssstddkeqarLAKAAAIIEYLGGEENIVDVDSCASRLRLTVVDAKKADIDGIKSLGGTTGALVKGNNIQIVY 593
664322...............02222333333333344599*****************************************9999999********* PP
TIGR02004 503 gtkvqsvkneleai 516
g + +++k +++ +
MMSYN1_0779 594 GGEQEAIKPRMQKL 607
********999976 PP
>> TIGR02005 PTS-IIBC-alpha: PTS system, alpha-glucoside-specific IIBC component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 96.9 10.9 5.3e-31 2e-28 3 280 .. 24 293 .. 22 305 .. 0.78
2 ! 158.1 0.3 1.5e-49 5.7e-47 286 522 .. 358 606 .. 345 608 .. 0.84
Alignments for each domain:
== domain 1 score: 96.9 bits; conditional E-value: 5.3e-31
TIGR02005 3 kiqrfGaalfvpvllfafaGlvvglaillknpdivGeladkntlfyklvsvieeGGwtvfrqlplifvvGlpialakkaqgraclavllsyltfnyfi 100
++ ++ a++ p+ l+++aG+ +g+ i + ++++l++ + +v+ + G + f +lp++f + + +a +k g a++++++++l+fn
MMSYN1_0779 24 TLSKLSKAFLLPIALLPIAGVFLGVGAA-----IAANTPEQSALWF-IGKVMGNMGDVCFGNLPVLFCISVALAYTKD-SGVAAITAVVGFLVFNGVQ 114
5678999***************999764.....4455667777777.899*********************9999886.5889999*********977 PP
TIGR02005 101 nailtlwg......ssfGvdlekdvevgvsGltliaGiktldtsiiGaiiisaivvylhnkffdkklpeflGifqGttfvviiaflvmlplalltclv 192
+ + t+ s + + k+v+++ +G + Gi +l+t+++G+i + ai+ +nkf++++lp+ + f Gt +v ii+f+ ++pl+++ ++
MMSYN1_0779 115 APLFTQGQvqsdkvSEYSLLWYKHVSNSLTG--SNMGILSLNTGVLGGIFVGAIAAKCYNKFHQTQLPTAISFFSGTKLVPIITFVAVIPLSFIFMMA 210
6666543211111134444455555554445..456************************************************************** PP
TIGR02005 193 wpkvqlGieslqaflvssGvl....GvwlytfleriliptGlhhfiygpfifGpavveeGikvewakhlsefaksakplkelfpeGgfalhG 280
wp + lG++ + + sG+l +++++er l+p Glhh y+p+ + a G a+ +++++k +++++++f + lhG
MMSYN1_0779 211 WPVIGLGLNKFG---QVSGTLpygtDSLIFEIVERSLVPFGLHHVFYAPLWWTSAG---G---SIAEGFNNLSKQSEAIQKVFVDSYNSLHG 293
*****9987655...55665522114689*********************987653...2...23445555566666666666665555555 PP
== domain 2 score: 158.1 bits; conditional E-value: 1.5e-49
TIGR02005 286 GcvGialalyatakpekkkkvagllipatltavlvGitepleftflfiapllf.vvhavla..aslaavmyafGvvgnlGgGlidlvatnwlpllkeh 380
G ala++ +a++e++++v g+ a++t l Gitep+e+tflf+ap+lf vh la a a+ + + gG+id+++ +p+++
MMSYN1_0779 358 GLPAAALAMWLAAPKENRQQVFGIYFSAAFTCFLTGITEPIEYTFLFVAPWLFyGVHMPLAsiAFWATGALQTHITQTVSGGIIDYIVFGIIPFISGA 455
555679*********************************************98459*9998333456666777788899***************9987 PP
TIGR02005 381 agvy..ltqiiiGlvfvaiyflvfrflilkfnlatpGredeeeevklyskadykakkGeakeakeaelese........kaaaflealGGkenikdvt 468
++ + + + + +v+ iyf f fli+ fn++tpGr+ + e+kly+kad+ka+kG ++ + +++++ kaaa++e lGG+eni dv+
MMSYN1_0779 456 MKPIsaFGVLGVAVVLAPIYFCAFYFLIKLFNVKTPGRDGNA-EAKLYTKADFKASKGLNVDGSKMSSSTDdkeqarlaKAAAIIEYLGGEENIVDVD 552
766511555666678889********************9877.9**************88776554443333456678899***************** PP
TIGR02005 469 ncatrlrisvkdeskvlddevfkkagahGvvrsGkaiqvivGlsvpqvreefes 522
ca+rlr++v d +k d + g+ G + +G+ iq++ G + ++ ++++
MMSYN1_0779 553 SCASRLRLTVVDAKKADIDGIKSLGGTTGALVKGNNIQIVYGGEQEAIKPRMQK 606
*************99888877777779*************99877777666665 PP
>> TIGR02003 PTS-II-BC-unk1: PTS system, IIBC component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 107.5 8.5 3.9e-34 1.5e-31 9 255 .. 26 266 .. 22 317 .. 0.91
2 ! 110.4 0.1 5.2e-35 1.9e-32 303 546 .. 346 609 .. 328 610 .. 0.77
Alignments for each domain:
== domain 1 score: 107.5 bits; conditional E-value: 3.9e-34
TIGR02003 9 qkfgkallvvvavmpaaglmisigkligmiagdvaalaslarviedigwavivnlhllfalaiggswakeraggafaallafvlinritgaiygvsae 106
k+ ka+l+ +a++p ag+++ +g +i+ + + +al +++v+ ++g nl +lf++++ +++k+ a++a++ f++ n + ++ +
MMSYN1_0779 26 SKLSKAFLLPIALLPIAGVFLGVGAAIAANTPEQSALWFIGKVMGNMGDVCFGNLPVLFCISVALAYTKDSGVAAITAVVGFLVFNGVQAPLFTQ-GQ 122
5899***************************************************************************************9974.55 PP
TIGR02003 107 mladskakvssvlatdlivkdyftsvleapalntgvfvgiiagflgatlynkyynydklpevlaffngkrfvpfvvilrsivvalvlvllwpviqsgl 204
+ +d s+l + + + s ++ +lntgv+ gi g + a ynk+++ +lp +++ff g ++vp++ + i ++++++ wpvi gl
MMSYN1_0779 123 VQSDK-VSEYSLLWYKHVSNSLTGSNMGILSLNTGVLGGIFVGAIAAKCYNKFHQ-TQLPTAISFFSGTKLVPIITFVAVIPLSFIFMMAWPVIGLGL 218
55664.455688999999999999****************************976.78**************************************** PP
TIGR02003 205 nefgrwiaaskdsapvlapflygtlerlllpfglhhmltipmnytelggty 255
n+fg+ + +++ +er l+pfglhh++ p+ +t+ gg+
MMSYN1_0779 219 NKFGQVSGTLPYG---TDSLIFEIVERSLVPFGLHHVFYAPLWWTSAGGSI 266
****975544333...457899**************************974 PP
== domain 2 score: 110.4 bits; conditional E-value: 5.2e-35
TIGR02003 303 rfkvgqvigataalmgialamyrnvdkekkakykmmflsaalavfltgvtepleylfmfiamvl.yvvyalvtglafaladlvnlrv...hafgfiel 396
rf+ g+ l alam+ ke++++ +++saa + fltg+tep+ey f+f+a+ l y v+ +af + ++ + + g i+
MMSYN1_0779 346 RFQSGKFGFMLLGLPAAALAMWLAAPKENRQQVFGIYFSAAFTCFLTGITEPIEYTFLFVAPWLfYGVHMPLASIAFWATGALQTHItqtVSGGIIDY 443
66667666666677788********************************************987355666666777744444333321114779***9 PP
TIGR02003 397 ltrtpmalkagltrdlinf..vivsllfavlnytladllikklnlatagrlgnydidiede...rasea...........rgtvvddsnslvvkvidl 478
+ + +g + + f + v++++a + + + +lik +n+ t+gr gn ++ + +as++ + ++ + ++++ +i+
MMSYN1_0779 444 IVFGIIPFISGAMKPISAFgvLGVAVVLAPIYFCAFYFLIKLFNVKTPGRDGNAEAKLYTKadfKASKGlnvdgskmsssTDDKEQARLAKAAAIIEY 541
99888877888877777773155899***************************87654322111233221111111000022223333457889**** PP
TIGR02003 479 lggkeniddvdacmtrlrvtvkdldkvaaeddwkkadalglivkdkgvqavygpkadvlksdiqdlld 546
lgg+eni dvd+c +rlr+tv d +k + ++ g +vk++ +q vyg + +k +q ll+
MMSYN1_0779 542 LGGEENIVDVDSCASRLRLTVVDAKKADIDGIKSLGGTTGALVKGNNIQIVYGGEQEAIKPRMQKLLE 609
***********************999888877778899**************************9996 PP
>> TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 112.6 6.8 1.3e-35 5e-33 1 178 [. 73 269 .. 73 298 .. 0.89
2 ! 63.6 1.4 1.2e-20 4.4e-18 206 285 .. 346 425 .. 332 429 .. 0.91
Alignments for each domain:
== domain 1 score: 112.6 bits; conditional E-value: 1.3e-35
TIGR00852 1 gsavFsfLPllfaigaakklaknpklgaalagilvypvllnamgvvakaeglelfgfeiakvk.....................ytgvvgpiivgalv 77
g+ F +LP+lf+i++a+ +k ++++aa+ ++++++v++ + + + +g ++ ++++++ + +tgv+g+i+vga++
MMSYN1_0779 73 GDVCFGNLPVLFCISVALAYTK-DSGVAAITAVVGFLVFNGVQAPLFT-QG-QVQSDKVSEYSllwykhvsnsltgsnmgilslNTGVLGGIFVGAIA 167
7889******************.9**************9876555555.66.688999998889999999**************************** PP
TIGR00852 78 lalierflkkklPdvlglflgprlvviiaglvailligplglvipsv..gisallsllvsagga.lgglifGflerlLvptGlHhifvaifiqtiage 172
+ +++f++ +lP+++++f g+ lv+ii++++ i+l ++ +++p + g+++++++ ++ ++ +lif ++er Lvp+GlHh+f+a+ + t ag+
MMSYN1_0779 168 AKCYNKFHQTQLPTAISFFSGTKLVPIITFVAVIPLSFIFMMAWPVIglGLNKFGQV-SGTLPYgTDSLIFEIVERSLVPFGLHHVFYAPLWWTSAGG 264
***********************************************9999999884.5666441458************************997764 PP
TIGR00852 173 aveggg 178
++++g
MMSYN1_0779 265 -SIAEG 269
.34444 PP
== domain 2 score: 63.6 bits; conditional E-value: 1.2e-20
TIGR00852 206 klksialpaaisaglgitelAiYgvalrerrplvagllisalltafvtgitepleflflfvaPvlf.aihavlagliftva 285
+++s +++ +++ gl++++lA++ +a +e+r+ v+g+ sa+ t+f+tgitep+e +flfvaP lf +h +la+++f+
MMSYN1_0779 346 RFQS-GKFGFMLLGLPAAALAMWLAAPKENRQQVFGIYFSAAFTCFLTGITEPIEYTFLFVAPWLFyGVHMPLASIAFWAT 425
5677.99********************************************************876269999999999865 PP
>> TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.9 8.8 4e-05 0.015 85 324 .. 5 255 .. 1 256 [. 0.78
2 ! 6.1 0.4 0.0023 0.87 353 391 .. 361 403 .. 354 466 .. 0.70
3 ! 41.6 0.3 3.9e-14 1.5e-11 6 100 .. 535 632 .. 530 638 .. 0.79
Alignments for each domain:
== domain 1 score: 11.9 bits; conditional E-value: 4e-05
TIGR01996 85 vsteevkkeaakklnplqrlvktlsdiFvPiiPvivasGLlmglkglltaeelleaslvevkeilealaelidvlasaaFafLPiLiafsaakeFg.. 180
++++ k++ ++ ++ ++ ls F+ i + +G+++g+ + a++ ++ l + +++ + + F LP+L +s a ++
MMSYN1_0779 5 TNKSSFKDKLKAFGANIMPTLSKLSKAFLLPIALLPIAGVFLGVGAAIAANTPEQS-------ALWFIGKVMGNMGDVCFGNLPVLFCISVALAYTkd 95
455666666666666677777778999987778888999*****999999766555.......344567888889999**********9988877611 PP
TIGR01996 181 .gnpvlgavlglilvspsllnayavaaaaeakka............lnifgleiavvgyqgsvlpvlvavlilakiekllrk.vvpealDll....lt 260
g + av+g lv + ++ + ++++ k ++ g ++ ++ + vl ++++ i+ak + +++ ++p+a+ + l+
MMSYN1_0779 96 sGVAAITAVVGF-LVFNGVQAPLFTQGQVQSDKVseysllwykhvsNSLTGSNMGILSLNTGVLGGIFVGAIAAKCYNKFHQtQLPTAISFFsgtkLV 192
144556667765.5666665555444444544445677899988877899*************************977776537*****975555599 PP
TIGR01996 261 PlltllitgllallvigPvlravedllleglqllydlagllgglvfGglysliVitGlHhsfka 324
P++t++ l+++++ + ++ l + q+ l+++ l+f + +V GlHh+f+a
MMSYN1_0779 193 PIITFVAVIPLSFIFMM-AWPVIGLGLNKFGQVSGTLPYGTDSLIFEIVERSLVPFGLHHVFYA 255
*****999999998885.567899999999999999*************************986 PP
== domain 2 score: 6.1 bits; conditional E-value: 0.0023
TIGR01996 353 gaalAvavktk...dkklkalalpsalsall.GitEpaiFGvn 391
+aalA+++++ ++++ ++++++a++++l GitEp+ +
MMSYN1_0779 361 AAALAMWLAAPkenRQQVFGIYFSAAFTCFLtGITEPIEYTFL 403
899**999875111445557899****99887*****866544 PP
== domain 3 score: 41.6 bits; conditional E-value: 3.9e-14
TIGR01996 6 akeilellGGkdNivsvahcaTRLRlvlkdekkidkkalekldkvkGtFknsgqyqiiiGtGvVnkv....ydelekltglsevsteevkkeaakkln 99
a+ i+e lGG++Niv v ca RLRl + d kk+d + ++ l + G+ ++ +qi+ G G + + + le++ + + + ++e+k+e +k +n
MMSYN1_0779 535 AAAIIEYLGGEENIVDVDSCASRLRLTVVDAKKADIDGIKSLGGTTGALVKGNNIQIVYG-GEQEAIkprmQKLLEQQRQEKMMGHSEMKSEEMKSEN 631
789********************************************************9.4445550000444444555556666777777777666 PP
TIGR01996 100 p 100
+
MMSYN1_0779 632 M 632
5 PP
>> TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.1 7.9 0.13 49 142 304 .. 66 252 .. 2 258 .. 0.58
2 ! 7.3 1.2 0.0009 0.34 334 453 .. 360 492 .. 354 523 .. 0.62
3 ! 43.9 0.2 7.3e-15 2.7e-12 5 87 .. 535 617 .. 532 635 .. 0.85
Alignments for each domain:
== domain 1 score: 0.1 bits; conditional E-value: 0.13
TIGR01995 142 yeilnalsdavfyflPillaisaakkfkvnpflav..aiaavlvlpelvamvas..................gkevtllgipvtlvsYsssvipvila 219
+++ ++d f lP+l is a ++ +a+ a+++ lv ++a + + +++++l g ++ ++s ++ v+ i++
MMSYN1_0779 66 GKVMGNMGDVCFGNLPVLFCISVALAYTKDSGVAAitAVVGFLVFNGVQAPLFTqgqvqsdkvseysllwykHVSNSLTGSNMGILSLNTGVLGGIFV 163
45667777777888888888888877777666665223456677766666555556777777888888877777777778777777777777776665 PP
TIGR01995 220 vflmsy.vekvlkkvipkalklf....ltpllvllitvpltllilGPvgvvlgeglasvilllyevspvlal.allaallqvlvilGlhwa 304
++++ +k+ + +p a+ f l+p+++ + ++pl+++++ v+g gl ++ ++ ++p+ + ++ + lv +Glh+
MMSYN1_0779 164 GAIAAKcYNKFHQTQLPTAISFFsgtkLVPIITFVAVIPLSFIFMMAW-PVIGLGLNKF-GQVSGTLPYGTDsLIFEIVERSLVPFGLHHV 252
544444157777777777777664444566666666666666665322.2345554433.3344444544330334444556666777665 PP
== domain 2 score: 7.3 bits; conditional E-value: 0.0009
TIGR01995 334 agavlavllktknkklkalal...satisallg.itEPaiyGvtlklkkpli.........aaviggavggliiglvsvkafavvvapgllglpafin 418
+a+la++l + +++ +++++ sa + +l+ itEP+ y + ++ a +ga+ i vs +++v +g++ + +
MMSYN1_0779 360 PAAALAMWLAAPKENRQQVFGiyfSAAFTCFLTgITEPIEYTFLFVAPWLFYgvhmplasiAFWATGALQTHITQTVSGGIIDYIV-FGIIPFISGAM 456
689******9988888888754449999999988****977665433333331000000003334566666666666666666654.56665554433 PP
TIGR01995 419 e.dssaanlivaliaivisfvvafvltyllgvkdee 453
+ s + l va++ i f + l +l++vk +
MMSYN1_0779 457 KpISAFGVLGVAVVLAPIYFCAFYFLIKLFNVKTPG 492
335666667777777777777777777777777763 PP
== domain 3 score: 43.9 bits; conditional E-value: 7.3e-15
TIGR01995 5 akeiieavGGkeNiesvvHCaTRLRftlkdeskadeeklkkisgvltvvkkggqyqvviGndVsevydellkvlgiekdeeee 87
a++iie +GG+eNi v Ca RLR+t+ d +kad + +k++ g ++ kg + q+v G + + + ++k+l + +e+
MMSYN1_0779 535 AAAIIEYLGGEENIVDVDSCASRLRLTVVDAKKADIDGIKSLGGTTGALVKGNNIQIVYGGEQEAIKPRMQKLLEQQRQEKMM 617
789***********************************************************999999999999444433332 PP
>> TIGR00826 EIIB_glc: PTS system, glucose-like IIB component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.9 0.2 2.8e-14 1.1e-11 3 88 .] 486 594 .. 484 594 .. 0.85
2 ? -3.3 0.8 7.5 2.8e+03 13 21 .. 693 701 .. 676 723 .. 0.54
Alignments for each domain:
== domain 1 score: 42.9 bits; conditional E-value: 2.8e-14
TIGR00826 3 lrlktpgrek......................adeealealegvkgvdtaagqlqalgGtgninevdacitrlRvgvkdeskvedevlkklg.akgvv 77
++ ktpgr+ ++ + ++ ++ +aa++++ lgG++ni++vd c++rlR++v d +k + + +k+lg g +
MMSYN1_0779 486 FNVKTPGRDGnaeaklytkadfkaskglnvdgSKMSSSTDDKEQARLAKAAAIIEYLGGEENIVDVDSCASRLRLTVVDAKKADIDGIKSLGgTTGAL 583
8999999999999999999999999999977755555555666667789***********************************99999987256677 PP
TIGR00826 78 rlqravqviig 88
+++++q ++g
MMSYN1_0779 584 VKGNNIQIVYG 594
77*****9987 PP
== domain 2 score: -3.3 bits; conditional E-value: 7.5
TIGR00826 13 adeealeal 21
+++ +++++
MMSYN1_0779 693 STKAKSTTS 701
222222222 PP
>> TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -4.2 7.3 3.6 1.3e+03 135 327 .. 46 255 .. 3 257 .. 0.53
2 ? 1.7 0.7 0.059 22 354 391 .. 361 401 .. 357 480 .. 0.67
3 ! 33.6 0.2 1.3e-11 4.7e-09 3 84 .. 534 615 .. 532 637 .. 0.78
Alignments for each domain:
== domain 1 score: -4.2 bits; conditional E-value: 3.6
TIGR01992 135 sfegktlvevyPqladvasllnl...iaeaifvflPvligWsavkklggse...ilgivlglil...vsPqllnayavg.kalaeikge...pvwd.f 218
g +++ P+ + ++ + ++ +++ f lPvl + s++ +++ ++ v+g ++ v+ l+ + +v +++e + v + +
MMSYN1_0779 46 LGVGAAIAANTPEQSALWFIGKVmgnMGDVCFGNLPVLFCISVALAYTKDSgvaAITAVVGFLVfngVQAPLFTQGQVQsDKVSEYSLLwykHVSNsL 143
44466677777777776654444111566789999999998887655544310033444444431223444444444443344443322111222232 PP
TIGR01992 219 GfleiekvgyqaqvlPillaayvlak.ieiflrkvvpeaikll....vvpvvalvltvllafiiiGPigl.aiGkgitsgvlalltgslaa.lggalf 309
++ ++ + vl ++ + + ak ++f + +p ai++ +vp++++v + l+fi + ++ iG g+ + ++g+l +++f
MMSYN1_0779 144 TGSNMGILSLNTGVLGGIFVGAIAAKcYNKFHQTQLPTAISFFsgtkLVPIITFVAVIPLSFIFMM--AWpVIGLGLNKFG--QVSGTLPYgTDSLIF 237
224455556666777666555555541467777788888887644446778877777777777663..3324666665432..233334331567788 PP
TIGR01992 310 GllyaplvitGlhhmtla 327
++ +lv Glhh++ a
MMSYN1_0779 238 EIVERSLVPFGLHHVFYA 255
888888998999988876 PP
== domain 2 score: 1.7 bits; conditional E-value: 0.059
TIGR01992 354 savlaiillsrkeekek..elsltaaisayl.GvtePalfG 391
+a+la++l ke++++ ++ +aa +++l G+teP +
MMSYN1_0779 361 AAALAMWLAAPKENRQQvfGIYFSAAFTCFLtGITEPIEYT 401
6999***99998888873356779999999889****8664 PP
== domain 3 score: 33.6 bits; conditional E-value: 1.3e-11
TIGR01992 3 dakelleaiGGkenieavthcvtrlrlvlkdeskvdkealeqidlvkGsftnagqfqvviGgdvekvykeliketgieevsk 84
+a +++e +GG+eni v c+ rlrl + d +k+d + ++ + G++ + ++ q+v Gg+ e + + k ++ +k
MMSYN1_0779 534 KAAAIIEYLGGEENIVDVDSCASRLRLTVVDAKKADIDGIKSLGGTTGALVKGNNIQIVYGGEQEAIKPRMQKLLEQQRQEK 615
5789*********************************************************988777655544444433333 PP
>> TIGR00601 rad23: UV excision repair protein Rad23
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.5 16.3 0.0053 2 55 135 .. 664 744 .. 620 745 .] 0.89
Alignments for each domain:
== domain 1 score: 5.5 bits; conditional E-value: 0.0053
TIGR00601 55 DdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatatales 135
++++v+e+k++ek + v k+K +++k+++ ++t++ +++t ++ s+ + +s+a +++ +++++ +++ + ++++
MMSYN1_0779 664 EEQPVSEMKVEEKVVDEMKVEKPKQTRTKSTKAKSTTSKSTKSTSKSSSKSTKSTSSKAKSTSSKPKTTKAKSTSSKTKTT 744
5789*******99888899*************9999999999999899999999999999999999999999888877665 PP
>> TIGR00934 2a38euk: potassium uptake protein, Trk family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.4 16.3 0.024 9.2 317 445 .. 590 735 .. 491 745 .] 0.39
Alignments for each domain:
== domain 1 score: 2.4 bits; conditional E-value: 0.024
TIGR00934 317 s..............qqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknv...kaakrkkknfkkreanlklfeksryakk 397
+ q+ l+++ ++k++ s+ ++ e+ k +++ +++ ++ ++kd+ ek+ + +k +++ + + + + k++++ +++k
MMSYN1_0779 590 QivyggeqeaikprmQKLLEQQRQEKMMGHSE-MKSEEMKSENMSMTCESNQACDKKDEACGCEKDCmceEPNKDEEQPVSEMKVEEKVVDEMKVEKP 686
03333333333333333333333333333222.22222233333334444443333333333333220101223333444455555555555555555 PP
TIGR00934 398 sdrneedngnkkdasksneseevsldseenayptyndeee.dsrhalsk 445
+ +++++ k +sks++s s++++ +++++++++ + +++++ k
MMSYN1_0779 687 KQTRTKSTKAKSTTSKSTKSTSKSSSKSTKSTSSKAKSTSsKPKTTKAK 735
5555555544444444444444444444433333333332222222211 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (745 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 396 (0.0882353); expected 89.8 (0.02)
Passed bias filter: 120 (0.026738); expected 89.8 (0.02)
Passed Vit filter: 22 (0.00490196); expected 4.5 (0.001)
Passed Fwd filter: 13 (0.00289661); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 12 [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.28
# Mc/sec: 3820.90
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0779 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0787 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0787.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0787/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0787 [L=942]
Description: ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 5=Equivalog Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.9e-282 935.5 15.4 9.6e-282 934.8 15.4 1.3 1 TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATP
6.4e-114 379.7 15.0 4.6e-112 373.5 15.0 2.1 1 TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-typ
1e-93 312.6 20.4 1.4e-91 305.5 20.4 2.8 1 TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase
1.8e-84 282.3 8.8 2.4e-44 149.6 0.3 2.6 2 TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPas
3e-70 235.4 10.9 1.7e-68 229.6 10.9 2.0 1 TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase
5.9e-68 227.3 22.8 2.8e-39 132.4 0.2 4.9 3 TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type AT
2.3e-65 218.8 25.1 4.8e-38 128.7 9.8 6.0 3 TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
5.3e-63 211.2 18.7 2.6e-35 119.5 7.0 4.0 3 TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, a
1.3e-55 187.3 7.0 1.3e-37 127.9 0.5 2.3 2 TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type AT
4.8e-48 161.4 12.9 5.4e-24 81.7 14.6 4.2 3 TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specific
7.6e-43 145.1 6.4 8.6e-21 72.3 0.6 4.0 3 TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
3.7e-35 119.5 7.9 1.9e-13 47.9 0.4 4.2 3 TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
1.7e-25 87.2 6.4 7.5e-23 78.4 6.4 2.5 1 TIGR01497 kdpB: K+-transporting ATPase, B subunit
3.7e-08 29.5 34.5 1.9e-05 20.5 2.6 5.4 4 TIGR01652 ATPase-Plipid: phospholipid-translocating P-type A
7e-07 27.3 0.1 1.4e-06 26.3 0.1 1.5 1 TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydr
5.2e-06 24.4 2.7 0.00061 17.6 1.3 2.9 2 TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0
0.00022 18.9 0.7 0.00045 17.8 0.7 1.5 1 TIGR00338 serB: phosphoserine phosphatase SerB
0.00077 17.4 3.1 0.042 11.8 3.1 2.5 1 TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-ph
0.001 16.4 0.1 0.0028 15.0 0.1 1.7 1 TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosp
------ inclusion threshold ------
0.016 12.9 0.4 0.044 11.5 0.1 1.9 2 TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase
0.035 12.1 1.9 0.075 11.0 0.1 2.6 3 TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
0.08 10.5 8.1 0.059 10.9 0.3 3.3 4 TIGR00099 Cof-subfamily: Cof-like hydrolase
Domain annotation for each model (and alignments):
>> TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 934.8 15.4 4.7e-284 9.6e-282 10 867 .] 27 941 .. 16 941 .. 0.91
Alignments for each domain:
== domain 1 score: 934.8 bits; conditional E-value: 4.7e-284
TIGR01524 10 erllkaaameketllrkldsheeGltaaevterlkkyGenevaeekkspalvqllrafnnpfiyvlaila...gvsylt.............edleav 91
+ ++++ e++++l++++ ++ Glt+++ rlkkyG ne+ + k+ + + ++l+af pf++vl +++ +sy+t +l ++
MMSYN1_0787 27 RFIKQVSNLEQNEVLEIMQLQHFGLTNEQYESRLKKYGTNELKK-KRFNLIAEFLHAFFGPFNIVLLLISlynFISYATngfyqdtnssdskFELVGA 123
334567899********************************975.56778899***********998765122688888*********998889**** PP
TIGR01524 92 viialmvslsgllrfvqearaeraadalkkmvkntatvlrvinen.ie........aal......eevpidelvpGdviklaaGdlipadvrviaard 174
+ii++mv++sgl +f+q r++ ++ + ++vk+t++++r n++ +e + l ee+ +++lvpGd+i l++Gd++padvr+i+++d
MMSYN1_0787 124 LIILVMVLASGLASFIQSLRSHLVTKKISSIVKSTTNIIRHKNDEdVEdylkitkrNQLdlirlgEEIDVKQLVPGDLIYLSSGDMLPADVRIIQSTD 221
****************************************8876423311111111222222233577889*************************** PP
TIGR01524 175 lliaqsaltGeslpvekvaatkeakdkellelenlllmGtnvvsGraqavvlatGsstffGslakavsedreqtafdkGvksvskllirfmlvmvpvv 272
l+i+qs+ltGes+pvek a++k+ +++l+len+++ Gt vvsG a avvlat t+f +++ka+ e+r +++f kG+k+v+ +l+ fmlvmvp v
MMSYN1_0787 222 LFINQSSLTGESIPVEKHANNKKN-TNNILDLENICYTGTSVVSGSALAVVLATANDTYFSTISKAILEKRPDSSFTKGIKQVTRMLLIFMLVMVPTV 318
*******************99998.99*********************************************************************** PP
TIGR01524 273 ll....inGlskG...d......wleaalfalavavGltpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkivlekh 357
+l i +s G d w++a +fa+avavGltpemlpmiv++nla+Ga k+sk+kv+vk+l+aiq +Ga+d+lctdktGtlt+dki+l+++
MMSYN1_0787 319 YLaksiIGTISSGgsfDsikdnpWFQAIFFAVAVAVGLTPEMLPMIVTTNLANGASKMSKQKVVVKQLEAIQSLGAIDVLCTDKTGTLTNDKIELVDY 416
97333233333332220222335*************************************************************************** PP
TIGR01524 358 ldvsGkkservlklaylnssfqtGlknvldravlekvdesiarstkarfkkvdeipfdferrrlsvvveeaaevrrlickGaveelltvathlregga 455
l v k +lk y+ns++qtGlkn +d+a+++ v+++ + +k+deipfdf+rr+l+++ ++++e+r +++kG+vee+l+ +t++ ++++
MMSYN1_0787 417 LRVDKKADPTLLKYLYINSYYQTGLKNPMDKAIVDYVNKHNHNFSIQDITKIDEIPFDFNRRKLTIIFDDENEKRFMVTKGSVEEILNSCTRVIQDDK 514
****************************************99999999************************************************** PP
TIGR01524 456 vvalsesekeelkavteelnrqGlrvvavatkklkaseadlskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevG 553
vv l+++ k+++ a e++n+qG r++ va+kk+ ++a++s +dee li Gf +fld pk stk++i+ lkk g+ +k+ltGd+e +t+ ic+ v
MMSYN1_0787 515 VVNLTDTFKRQIIAYYETINQQGKRLLGVAYKKIRDNQAKFSPKDEESLIFMGFASFLDTPKPSTKQTIKLLKKYGVDLKILTGDSEPITRAICKMVN 612
************************************************************************************************** PP
TIGR01524 554 idandvllGadieelsdeelaaevekravfarltplqkerivtllkkeGhtvGflGdGindapalrkadvGisvdsaadiakeasdiillekslmvle 651
+d +++++G +i++ s+ el + ve +++f +l plqk +i+++lk++ h+vG++GdGindap lr++dv isv+ a++iak+asdiilleksl+vle
MMSYN1_0787 613 LDIKGLVTGEEIDAASEYELKKIVEDNNIFVKLNPLQKVKIIQVLKQNNHVVGYMGDGINDAPVLRQSDVAISVNNATEIAKDASDIILLEKSLLVLE 710
************************************************************************************************** PP
TIGR01524 652 egvieGretfgnilkylkmtassnfgnvfsvlvasafipflpmlalhlliqnllydvsqlalpfdkvdkeflkkprkweakdlgrfllfiGpvssifd 749
+g+i+Gr +fgnilky+k+t++snfgn +svl+ + ++pf pm + +l+qnl+yd+sq+ + d+vd fl p++w++kdl+ f + G +s+ifd
MMSYN1_0787 711 KGIIQGRTIFGNILKYIKITTASNFGNALSVLIGTVWLPFSPMAPAQILLQNLIYDFSQFGVALDRVDSTFLTSPQRWQSKDLLPFTTINGSISTIFD 808
************************************************************************************************** PP
TIGR01524 750 iatfllmwyvf..........aant..veeqal..fqsGwfvvGllsqtlvvhmirtekipfiqsraalpvllatll..vmavGiiipfsplgasvgl 831
++tf++ y f a n+ ++q+l f++ wf++Gllsqt+v ++rte++p iqsr+++pv ++ l +ma i + s +g+ v+l
MMSYN1_0787 809 LITFAIAGYYFgfitsynsaiAQNNslLAAQSLaqFHACWFIIGLLSQTFVFQILRTEQLPVIQSRSTWPVYVIGALatIMAFSI-VYISQIGSLVQL 905
******977763344333221123222355655559***********************************99876612555554.45799******* PP
TIGR01524 832 ealplsyfpwliailvgymlvaqlvkrfyirrfgew 867
++ l y p iai+ +y+l+aql k y + f++w
MMSYN1_0787 906 QSPGLIYIPISIAIIFSYCLIAQLTKVGYKKVFKKW 941
*********************************998 PP
>> TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 373.5 15.0 2.3e-114 4.6e-112 1 750 [. 50 901 .. 50 906 .. 0.84
Alignments for each domain:
== domain 1 score: 373.5 bits; conditional E-value: 2.3e-114
TIGR01647 1 GLsseeakkrlkkyGpneleekkeskllkFlsflwnPlswvleiAaiiaialen................weDfviilallllnatigfieeskAgna 82
GL++e+ ++rlkkyG+nel++k+ + + +Fl+ +++P+++vl + +++ + +iil++ l + +fi+ + +
MMSYN1_0787 50 GLTNEQYESRLKKYGTNELKKKRFNLIAEFLHAFFGPFNIVLLLISLYNFISYAtngfyqdtnssdskfeLVGALIILVMVLASGLASFIQSLRSHLV 147
9***************************************9988777665544456798899999888776677888888888899999998887777 PP
TIGR01647 83 veaLkkslapkakvlRdgk...............w......qeleakelvpGDvvalklGdivpaDvklvegdklkvDqaaltGEslpvekklg.... 155
+ + + ++++++++R + + +e++ k+lvpGD++ l +Gd++paDv++++ ++l ++q++ltGEs+pvek+++
MMSYN1_0787 148 TKKISSIVKSTTNIIRHKNdedvedylkitkrnqLdlirlgEEIDVKQLVPGDLIYLSSGDMLPADVRIIQSTDLFINQSSLTGESIPVEKHANnkkn 245
7777776666666666432111112111111111222222347899********************************************99752222 PP
TIGR01647 156 ........diaysgsvvkkGEveavvvatGvntffGkaakLveeaekesghlqkilskigavlivlilvlvliellvellkrkeslres......... 236
+i+y+g v G + avv at +t+f +k + e++ + ++++k ++++ +l++++lv+v + l++ + + s +
MMSYN1_0787 246 tnnildleNICYTGTSVVSGSALAVVLATANDTYFSTISKAILEKRPD-SSFTKGIKQVTRMLLIFMLVMVPTVYLAKSIIGTISS--Ggsfdsikdn 340
22222222579****************************999999955.59***************99999777666554322222..1224555888 PP
TIGR01647 237 .....lqfalvllvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideelivkeeldkedvlllaalas.. 327
+ fa+++ v+ P lp+++++ lA Ga+k++k+k++vk+l ai +l ++d+LC DktGtlt +k+++ + l v +++d +l++ + s
MMSYN1_0787 341 pwfqaIFFAVAVAVGLTPEMLPMIVTTNLANGASKMSKQKVVVKQLEAIQSLGAIDVLCTDKTGTLTNDKIELVDYLRVDKKAD-PTLLKYLYINSyy 437
9999999*********************************************************************99999665.6688888888877 PP
TIGR01647 328 reedkdaidtavlkkladlk..ealekykelefvpfdpvekrteatledeetgkkfkvtkGapqvildlvkekkeieee..........veekveelA 413
++ k+++d+a+++ + + + ++++++++ +pfd +++ ++++ de ++k+f vtkG+ + il+ +++ + ++ + ++ e +
MMSYN1_0787 438 QTGLKNPMDKAIVDYVNKHNhnFSIQDITKIDEIPFDFNRRKLTIIFDDE-NEKRFMVTKGSVEEILNSCTRVIQDDKVvnltdtfkrqIIAYYETIN 534
88889********9887777557899***********8877777766665.69**************9997643332224445776666777778999 PP
TIGR01647 414 erGlRaLgvava...........dekgewellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglgtniltaekllkkkkedkl 500
++G R Lgva++ +++++ ++g ++lD P++ tk+ti+ k++gv++k++tGD i++ ++++++l+ + l++ ++ d
MMSYN1_0787 535 QQGKRLLGVAYKkirdnqakfspKDEESLIFMGFASFLDTPKPSTKQTIKLLKKYGVDLKILTGDSEPITRAICKMVNLDI-----KGLVTGEEIDAA 627
9**********9**********9999****************************************************985.....566666666666 PP
TIGR01647 501 kseeleelvekadGFAevfPeHkyeivealqkrghlvgmtGDGvnDaPaLkkAdvGiAvagAtDAArsaaDivltepGlsviveAikesRkiFqRmks 598
++ el+++ve+ + F ++ P k +i+++l++++h+vg GDG+nDaP L++ dv i v++At+ A+ a+Di+l+e l v+ + i++ R iF + +
MMSYN1_0787 628 SEYELKKIVEDNNIFVKLNPLQKVKIIQVLKQNNHVVGYMGDGINDAPVLRQSDVAISVNNATEIAKDASDIILLEKSLLVLEKGIIQGRTIFGNILK 725
66699********************************************************************************************* PP
TIGR01647 599 yviYrvaltlrivvflallililkfk.lpvllvvllallnDgtiltiakDrvkps..kkPekWnlkevflvaivlglilvvstllllalaldtsffed 693
y+ + a + + + + +++l f+ +++ ++l l+ D + + +a Drv ++ ++P++W+ k ++ +++ g i ++ l+++a+a f+
MMSYN1_0787 726 YIKITTASNFGNALSVLIGTVWLPFSpMAPAQILLQNLIYDFSQFGVALDRVDSTflTSPQRWQSKDLLPFTTINGSISTIFDLITFAIAGYYFGFIT 823
****************************************************9874479**************************9999887666666 PP
TIGR01647 694 kvllelkkee....................lqsllylkvsisgqllifvtRtkgfsfver.pgkllliavviaqivat 750
+ + + +++ l++ ++ ++ql ++ +R+ + ++v ++++++++v + +++
MMSYN1_0787 824 SYNSAIAQNNsllaaqslaqfhacwfiiglLSQTFVFQILRTEQLPVIQSRSTWPVYVIGaLATIMAFSIVYISQIGS 901
666555555567777888899999999997666666788889999999999999988876345555555555444555 PP
>> TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 305.5 20.4 6.9e-94 1.4e-91 3 739 .. 31 811 .. 29 936 .. 0.80
Alignments for each domain:
== domain 1 score: 305.5 bits; conditional E-value: 6.9e-94
TIGR01522 3 kyselsveetlskletdlenGlsssqevsrrrklhGsnelkveeeesllkkflsqfvkdp.lillllas.avvsvllg.niddavs......itlail 91
+ s+l +e+l++++ + + Gl+ +++ + r k +G+nelk + +l+ +fl+ f ++lll++ +s + ++d+ s + a++
MMSYN1_0787 31 QVSNLEQNEVLEIMQLQ-HFGLT-NEQYESRLKKYGTNELKKK-RFNLIAEFLHAFFGPFnIVLLLISLyNFISYATNgFYQDTNSsdskfeLVGALI 125
66777788888888875.46888.5556778888999999865.568999999998765414444444225677654312333322111211444444 PP
TIGR01522 92 ivvtv......gfvqeyrsekslealnklvpaechliraGkeehv.............l........asklvpGdlvelsvGdrvpadlriveavdls 162
i+v v +f+q rs ++++ +v + +++ir + e v l ++lvpGdl+ ls Gd +pad+ri++++dl
MMSYN1_0787 126 ILVMVlasglaSFIQSLRSHLVTKKISSIVKSTTNIIRHKNDEDVedylkitkrnqldLirlgeeidVKQLVPGDLIYLSSGDMLPADVRIIQSTDLF 223
4444333333369999999999999999999999999988766543332222222222122222222579**************************** PP
TIGR01522 163 idesnltGettpvkkssea...iealaersniaymGtlvreGkgkGivvgtGsntefGavfemmqeiekpktplqksmdklGkdlslvsfivigvivl 257
i++s+ltGe+ pv+k+++ +++ + +ni y Gt v +G + +v++t ++t f ++ + + e ++p + + k + ++ + l ++ ++++ + l
MMSYN1_0787 224 INQSSLTGESIPVEKHANNkknTNNILDLENICYTGTSVVSGSALAVVLATANDTYFSTISKAILE-KRPDSSFTKGIKQVTRMLLIFMLVMVPTVYL 320
***************98761115678999*******************************999875.6899999999999999998877776665554 PP
TIGR01522 258 ....vGllqG.........kdwlemftisvslavaaipeGlpiivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtkiyt 342
+G + + w++ + +v++av pe lp+ivt la G +msk+k +v++l ++++lG+++v+c+dktGtlt++++ +
MMSYN1_0787 321 aksiIGTISSggsfdsikdNPWFQAIFFAVAVAVGLTPEMLPMIVTTNLANGASKMSKQKVVVKQLEAIQSLGAIDVLCTDKTGTLTNDKIELVDYLR 418
222244332112222221156999999*************************************************************9988877777 PP
TIGR01522 343 vdklaalslktvavekilkvgalcnnakvkneaasllgkptdvaliellekfgledlretvkrvaevpfsserkymavkvl.tdskkivfvkGateqv 439
vdk a +++ k l + n+ + l +p+d a+++ ++k + + ++ +++ e+pf+ +r+ +++ +++k+ + kG++e++
MMSYN1_0787 419 VDKKA-----DPTLLKYLYI-----NSYYQTG----LKNPMDKAIVDYVNKHNHNFSIQDITKIDEIPFDFNRRKLTIIFDdENEKRFMVTKGSVEEI 502
76654.....4455555554.....5555544....99********************************987776665551566677888******* PP
TIGR01522 440 leyctsylkkdGkteklteeqkekiqeeaaemaseGlrvlalaskt............ekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGd 525
l++ct ++ k +lt+ k +i + ++G r+l++a+k+ e++l+f+G+ + d p+p+ k++++ l + Gv ++++tGd
MMSYN1_0787 503 LNSCTRVIQD-DKVVNLTDTFKRQIIAYYETINQQGKRLLGVAYKKirdnqakfspkdEESLIFMGFASFLDTPKPSTKQTIKLLKKYGVDLKILTGD 599
*****98876.7899***************************9874222222222222568************************************* PP
TIGR01522 526 seetavsiarrlGlavksskeGekldelddqqlsevvdkvavfaraspehklkivkalqkrGdvvamtGdGvndapalkladiGvamGrtGtdvakea 623
se + +i++ + l +k +Ge++d+ ++ +l+++v+ ++f + p +k+ki++ l+++ vv GdG+ndap l+ +d+ +++ + t++ak+a
MMSYN1_0787 600 SEPITRAICKMVNLDIKGLVTGEEIDAASEYELKKIVEDNNIFVKLNPLQKVKIIQVLKQNNHVVGYMGDGINDAPVLRQSDVAISVN-NATEIAKDA 696
**************************************************************************************96.67******* PP
TIGR01522 624 admiltdddfatilsaieeGkGifnniknfitfqlstsva.alslvalatvlklenplnamqilwinilmdGppaqslGvepvdkdvlkkpprkrkdk 720
+d+il + ++ + i +G+ if ni +i+ ++ als+ + tv p+ + qil n++ d + ++ vd+ l+ p r ++++
MMSYN1_0787 697 SDIILLEKSLLVLEKGIIQGRTIFGNILKYIKITTASNFGnALSV-LIGTVWLPFSPMAPAQILLQNLIYDFS-QFGVALDRVDSTFLTSPQRWQSKD 792
********************************9987777526765.5888888889***************75.4567889**********9999998 PP
TIGR01522 721 iltkdllkkvlvsaviivv 739
+l ++ + + + +++
MMSYN1_0787 793 LLPFTTINGSISTIFDLIT 811
8887777766666555554 PP
>> TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 135.1 3.1 2.8e-42 5.7e-40 38 291 .. 154 421 .. 122 431 .. 0.79
2 ! 149.6 0.3 1.2e-46 2.4e-44 369 700 .. 461 828 .. 441 917 .. 0.82
Alignments for each domain:
== domain 1 score: 135.1 bits; conditional E-value: 2.8e-42
TIGR01116 38 vlnaivGvwqernaekaiealkeleseealvlrdark..akdlvpGdivelavGdkvpadvrllelkslkvdqsiltGesvsvekktesvkkekaavq 133
++ ++ +++++n e + lk ++ +++ ++r +++ k+lvpGd++ l Gd +padvr+ ++ l ++qs+ltGes +vek+++ k+ +++
MMSYN1_0787 154 IVKSTTNIIRHKNDEDVEDYLKITKRNQLDLIRLGEEidVKQLVPGDLIYLSSGDMLPADVRIIQSTDLFINQSSLTGESIPVEKHANNK-KNTNNIL 250
677888999999999999*********99999976652279*********************************************9985.5667788 PP
TIGR01116 134 dkknmlfsGtlvvaGkalgvvvrtGvnteiGkirkevkeaeeektPlkkkldefGeklskvialicilvwvin..i......kkflaiy......yfk 217
d +n+ ++Gt vv+G al+vv +t +t +i k++ e+ ++ + k + + +l ++ ++ v+++ i + f +i +
MMSYN1_0787 251 DLENICYTGTSVVSGSALAVVLATANDTYFSTISKAILEKRP-DSSFTKGIKQVTRMLLIFMLVMVPTVYLAKsiIgtissgGSFDSIKdnpwfqAIF 347
88**********************************988754.4445555555555554444333333443321111111114566654222111334 PP
TIGR01116 218 iavalavaaiPeGlPavittclalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkmsvaklvalek 291
ava+av Pe lP ++tt la G+ km+k++ +v++l +++lG v+c+dktGtlt +k+ ++ + ++k
MMSYN1_0787 348 FAVAVAVGLTPEMLPMIVTTNLANGASKMSKQKVVVKQLEAIQSLGAIDVLCTDKTGTLTNDKIELVDYLRVDK 421
69999999*****************************************************9998877766665 PP
== domain 2 score: 149.6 bits; conditional E-value: 1.2e-46
TIGR01116 369 cnslikkkatlefsrdrksmsvlvksnk....lfvkGapeellersthillkgsavPltekakqkilaslkelssealrclalavk............ 450
+ + i k+ + f+ +r+ ++++ ++ + kG++ee+l+ +t++ ++++v lt+ k++i+a + + +++ r l++a+k
MMSYN1_0787 461 SIQDITKIDEIPFDFNRRKLTIIFDDENekrfMVTKGSVEEILNSCTRVIQDDKVVNLTDTFKRQIIAYYETINQQGKRLLGVAYKkirdnqakfspk 558
44556677788899999999988754332333899***********************************************9996333333333322 PP
TIGR01116 451 eesklifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriG..ilssftGkefeelee.......kkalvfsrvePshklklve. 538
+e +lif+G +++d P++ +++i+ ++ G+ + ++tGd ++ai++ + i + tG+e+++ +e ++ +f + +P +k+k+++
MMSYN1_0787 559 DEESLIFMGFASFLDTPKPSTKQTIKLLKKYGVDLKILTGDSEPITRAICKMVNldIKGLVTGEEIDAASEyelkkivEDNNIFVKLNPLQKVKIIQv 656
5889**********************************************987522677899**9997765222112234569*************93 PP
TIGR01116 539 lkeldqivamtGdGvndaPalkkadiGiamGsGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevvsifl.taalgieali 635
lk+ +++v GdG+ndaP l+++d+ i++ te+ak+asd++l + + + k + +Gr+i+ n+ ++i+ +sn G+ s+++ t l + ++
MMSYN1_0787 657 LKQNNHVVGYMGDGINDAPVLRQSDVAISVNNATEIAKDASDIILLEKSLLVLEKGIIQGRTIFGNILKYIKITTASNFGNALSVLIgTVWLPFSPMA 754
577789******************************************************************************99835679****** PP
TIGR01116 636 pvqllWvnlvtdGlPatalgfnppdkdilkkpprkede...p.......litgwlflrylviGvyvGlatvaali 700
p q+l nl+ d +++++ d l+ p+r + + p ++t + ++ + + G y G++t + +
MMSYN1_0787 755 PAQILLQNLIYDF-SQFGVALDRVDSTFLTSPQRWQSKdllPfttingsISTIFDLITFAIAGYYFGFITSYNSA 828
***********96.56788999*******9999966541332111111145566689999999999999988654 PP
>> TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 229.6 10.9 8.5e-71 1.7e-68 52 750 .. 47 783 .. 10 863 .. 0.79
Alignments for each domain:
== domain 1 score: 229.6 bits; conditional E-value: 8.5e-71
TIGR01517 52 lneGvssselerRekvygknelpekkeksflqlvweals..DktlilLsvaavvslvv.....geekeeketgwieGvailvsvl............. 129
++ G+++++ e R k+yg nel +k+ + + +++ + + +++l+l+s ++s ++ ++++++++ +++ + ilv vl
MMSYN1_0787 47 QHFGLTNEQYESRLKKYGTNELKKKRFNLIAEFLHAFFGpfNIVLLLISLYNFISYATngfyqDTNSSDSKFELVGALIILVMVLasglasfiqslrs 144
3569999999***********99999888888887777622455555666678886541111144555555556666666666652221111111111 PP
TIGR01517 130 .........lvvlvtavnDykkelqfreLnekkeekkikviRggqeiqisiadvvvGDivslstGdvvpaDgvlisGlklkiDessltGesdpi.... 214
+v t + +k++ + + + +++ iR g+ +i+++++v GD++ ls Gd++paD +i+ ++l i+ ssltGes p+
MMSYN1_0787 145 hlvtkkissIVKSTTNIIRHKNDEDVEDYLKITKRNQLDLIRLGE--EIDVKQLVPGDLIYLSSGDMLPADVRIIQSTDLFINQSSLTGESIPVekha 240
110000000111111122233333333333444444455555554..5899****************************************8762212 PP
TIGR01517 215 ..kkgkekLl.......sGtkvlegsgrmlvtavGvnsvtGklltelreageeeplqlkLselasligkfGlgsavllllvlvlryviekivedteek 303
kk+++++l +Gt v++gs+ +v a ++ + + + e+ +++ + + ++++ ++ f l++ ++l ++ i+ + +++k
MMSYN1_0787 241 nnKKNTNNILdlenicyTGTSVVSGSALAVVLATANDTYFSTISKAILEKRPDSSFTKGIKQVTRMLLIFMLVMVPTVYLAKSIIGTISSGGSFDSIK 338
224445555444444558********************999999999999999999999999998888776666555555555555555555667778 PP
TIGR01517 304 aktlldlfiiavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvkgyigeeavrnilveaivlnss 401
+ ++ + av + v Pe LP+ vt La + k+ k++ v++L+a +G+ +C+DktGtLt++++ v +++ l++ +++ns
MMSYN1_0787 339 DNPWFQAIFFAVAVAVGLTPEMLPMIVTTNLANGASKMSKQKVVVKQLEAIQSLGAIDVLCTDKTGTLTNDKIELVDYLRVDKKADPTLLKYLYINSY 436
8999********************************************************************************************98 PP
TIGR01517 402 aeeekdkgkeefiGsktetalLelvklllkdvkekrkeekvvkiypfeserkkmsvvvkhseglRlf.ikGaseivlkkcekkldsngeakeisekkd 498
++ + ++ ++a++++v++ +++ ++ ++ +pf+ +r+k++++ ++ R+ +kG+ e +l++c+ +++ + ++ k
MMSYN1_0787 437 YQTG--------LKNPMDKAIVDYVNKH--NHNFSIQDITKIDEIPFDFNRRKLTIIFDDENEKRFMvTKGSVEEILNSCTRVIQDDKVVNLTDTFKR 524
6554........55899*******9865..455556666667789***************999997538************99987766666666788 PP
TIGR01517 499 evedeienlasealRtislayk....delpekdspnkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltagelale 592
++ e + ++ R + +ayk +++++ +++++l++++ + d ++ ++++k ++ G+ ++ tGD +ai + ++ +g ++ e
MMSYN1_0787 525 QIIAYYETINQQGKRLLGVAYKkirdNQAKFSPKDEESLIFMGFASFLDTPKPSTKQTIKLLKKYGVDLKILTGDSEPITRAICKMVNLDIKGLVTGE 622
9999****************98333235556667899**************************************************99998888776 PP
TIGR01517 593 ....gkefrkdkilpklrvlaRssPlDkqlLve.lkklgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRav 685
+e+ +ki++ +++ + +Pl k +++ lk+ +vv GDG nDaP L+++dv +++ a te+ak+asDiill+ + + ++ GR++
MMSYN1_0787 623 eidaASEYELKKIVEDNNIFVKLNPLQKVKIIQvLKQNNHVVGYMGDGINDAPVLRQSDVAISVNNA-TEIAKDASDIILLEKSLLVLEKGIIQGRTI 719
22224788999999999***********888872577789**************************9.****************************** PP
TIGR01517 686 ydsikkflqfqLtvnvvavilafvgalisstspLtavqlLWvnlimDtLaaLaLateePteelld 750
+i k++++ n + +g++ sp+ q+L nli D + +a ++ + l
MMSYN1_0787 720 FGNILKYIKITTASNFGNALSVLIGTVWLPFSPMAPAQILLQNLIYDF-SQFGVALDRVDSTFLT 783
******************999************************994.5555665655555555 PP
>> TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.9 9.2 4.6e-29 9.3e-27 44 369 .. 107 411 .. 32 416 .. 0.72
2 ! 132.4 0.2 1.4e-41 2.8e-39 480 816 .. 462 779 .. 441 853 .. 0.89
3 ? -0.4 1.0 0.17 36 939 994 .. 884 939 .. 855 941 .. 0.91
Alignments for each domain:
== domain 1 score: 90.9 bits; conditional E-value: 4.6e-29
TIGR01523 44 leddskvdakkvllrqvlnamivvlllaail.sf..attdwieggvisavivlnvlvglvqeykaektmdslktlaspnahvirsskseaidskdlvp 138
+ +d++ + k l l +++v la l sf +++ + is + + + +++ e d lk + +ir + e id k+lvp
MMSYN1_0787 107 FYQDTNSSDSKFELVGALIILVMV--LASGLaSFiqSLRSHLVTKKISSI--VKSTTNIIRHKNDEDVEDYLKITKRNQLDLIRLG--EEIDVKQLVP 198
444444444444443333333333..322221331122333334444444..3445566666666777777777777777777765..78******** PP
TIGR01523 139 gdvvllkvgdvvpadlrlvetknfetdealltgeslpvikdanlvfqkeeevsvgdrlnlaysssivvkgrakgiviktalqseigkiakslrqdskl 236
gd++ l gd++pad+r++++ ++ +++ ltges+pv k an k++ ++ d n+ y+ + vv g a +v++ta ++ +i+k++
MMSYN1_0787 199 GDLIYLSSGDMLPADVRIIQSTDLFINQSSLTGESIPVEKHANN---KKNTNNILDLENICYTGTSVVSGSALAVVLATANDTYFSTISKAI------ 287
*****************************************995...56666899*********************************9975...... PP
TIGR01523 237 isrepskrrklnkyiltkkvvqavlglnvgtplqrklsklavllfciavllaiivmaaqkfdvdk.....evaiyaislalsiipeslvvvlsitmav 329
+++ p+ + + +t+ + + l ++ + + +++ +i + +fd k + +a+++a+ + pe l ++++ +a
MMSYN1_0787 288 LEKRPDSSFTKGIKQVTRMLLIFM------------LVMVPTVYLAKSIIGTIS--SGGSFDSIKdnpwfQAIFFAVAVAVGLTPEMLPMIVTTNLAN 371
566788776655443343333222............233333333334444433..3344444331122255678*********************** PP
TIGR01523 330 gakvmvkrrvivrklealealgavtdicsdktgtltqgkm 369
ga +m+k++v+v++lea+++lga++ +c+dktgtlt+ k+
MMSYN1_0787 372 GASKMSKQKVVVKQLEAIQSLGAIDVLCTDKTGTLTNDKI 411
************************************9986 PP
== domain 2 score: 132.4 bits; conditional E-value: 1.4e-41
TIGR01523 480 lksnefvaeypfdsevkrmavvyedqqnetytvyakgaverilercsss....ygstleepdveliikqveslaaeglrvlalaskvidkddvnitln 573
+ + + e pfd + ++++++++d++++ + + +kg+ve+il+ c+ + l+++ + ii+ e++ ++g r+l++a k i +++ + ++
MMSYN1_0787 462 IQDITKIDEIPFDFNRRKLTIIFDDENEKRF-MVTKGSVEEILNSCTRViqddKVVNLTDTFKRQIIAYYETINQQGKRLLGVAYKKIRDNQA-KFSP 557
4667889***************999988855.669***********976222245789*****************************976665.5567 PP
TIGR01523 574 rdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilptnlisdrdeivdsmvmtgsqfdalseeevddlkvlplv 671
+d e +l f+++ d p+ +k ++k++++ g+ +++ltgd ++ai + v + ++tg ++da se e+ ++ +
MMSYN1_0787 558 KD--EESLIFMGFASFLDTPKPSTKQTIKLLKKYGVDLKILTGDSEPITRAICKMVNLDIK------------GLVTGEEIDAASEYELKKIVEDNNI 641
76..899**********************************************98865322............3579********************* PP
TIGR01523 672 iarcapqtkvkmiealhrrkkfvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfvlqllvenvaev 769
+ p kvk+i+ l++ + v gdg+nd+p l+q++v i++ n +++ak+asdi+l + + + + +gr ++ ni k++ ++n +++
MMSYN1_0787 642 FVKLNPLQKVKIIQVLKQNNHVVGYMGDGINDAPVLRQSDVAISV-NNATEIAKDASDIILLEKSLLVLEKGIIQGRTIFGNILKYIKITTASNFGNA 738
*******************************************98.6999************************************************ PP
TIGR01523 770 lllvvglvfrdevgksvfplspvevlwiivvtssfpamglglekaap 816
l +++g v+ + p++p ++l +++ f +g+ l++ +
MMSYN1_0787 739 LSVLIGTVW-----LPFSPMAPAQILLQNLIY-DFSQFGVALDRVDS 779
******987.....6778********999986.58888888877655 PP
== domain 3 score: -0.4 bits; conditional E-value: 0.17
TIGR01523 939 ilaavsvfpvvyipvinddvfkhkyigaewglvivaviayfiyvelyksikrrltk 994
+la + +f +vyi i v + + + i++++ y + ++l k + ++++k
MMSYN1_0787 884 ALATIMAFSIVYISQIGSLVQLQSPGLIYIPISIAIIFSYCLIAQLTKVGYKKVFK 939
68999*****************99988889999999999*********99998887 PP
>> TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 128.7 9.8 2.4e-40 4.8e-38 6 365 .. 152 613 .. 147 614 .. 0.72
2 ! 82.8 0.2 2.1e-26 4.2e-24 357 475 .. 633 756 .. 618 759 .. 0.93
3 ? -5.0 2.4 8.6 1.8e+03 144 192 .. 881 929 .. 866 932 .. 0.64
Alignments for each domain:
== domain 1 score: 128.7 bits; conditional E-value: 2.4e-40
TIGR01494 6 vllfallealakekaedalrslkdkelnskkvtvlregekeisskdlvvGDivlvkkgekvpaDgvlls.gsaevdessLtGEsnpvekkeavfagti 102
++++ + ++++ k ++++++ + ++ ++ +r ++ei++k+lv+GD++++++g+ +paD+++++ +++++++ssLtGEs pvek+ + ++t+
MMSYN1_0787 152 SSIVKSTTNIIRHKNDEDVEDYLK-ITKRNQLDLIR-LGEEIDVKQLVPGDLIYLSSGDMLPADVRIIQsTDLFINQSSLTGESIPVEKHANNKKNTN 247
567778888888888888888888.34444455555.479**************************996257**********************9998 PP
TIGR01494 103 n........fegtlklkvskiavvvktgsek...............tplqrkldklalifllallllallvfllvliel.............ktflki 164
n ++gt ++ s++avv++t++++ + +++ +++++ ++l+++l+++ +v l++ i + + ++++
MMSYN1_0787 248 NildlenicYTGTSVVSGSALAVVLATANDTyfstiskailekrpdSSFTKGIKQVTRMLLIFMLVMVPTVYLAKSIIGtissggsfdsikdNPWFQA 345
85555555568999999999999999998742222211111111112223333445555555555554444333322221121222222222459*** PP
TIGR01494 165 ilralillviaiPiaLpvavtialavgdkrl...ailvrslnaleelgkvdvilsDKTGTLTenkmelkk...............vviggeyqsg..s 242
i+ a++++v ++P+ Lp+ vt+ la+g++++ +++v++l+a+++lg +dv+++DKTGTLT +k+el++ ++i++ yq+g +
MMSYN1_0787 346 IFFAVAVAVGLTPEMLPMIVTTNLANGASKMskqKVVVKQLEAIQSLGAIDVLCTDKTGTLTNDKIELVDylrvdkkadptllkyLYINSYYQTGlkN 443
****************************99955459******************************98762222222222222225677777775449 PP
TIGR01494 243 pdekalvksakk...........ilkvlefeserkrmsvivkkpkgk...yvkGapevilervkkleek.................leelaseglrtl 309
p++ka+v++++k ++++++f+ r+++++i +++++k ++kG++e il+ ++++ + +e+++++g r+l
MMSYN1_0787 444 PMDKAIVDYVNKhnhnfsiqditKIDEIPFDFNRRKLTIIFDDENEKrfmVTKGSVEEILNSCTRVIQDdkvvnltdtfkrqiiayYETINQQGKRLL 541
*********9973333333333358899**************9999766689***********9876532333333333333333378899******* PP
TIGR01494 310 avaske................ellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelgl 365
+va+k+ +++G+ + d +++++k+ti+ lkk g+++++lTGD++ ++ai+k ++l
MMSYN1_0787 542 GVAYKKirdnqakfspkdeeslIFMGFASFLDTPKPSTKQTIKLLKKYGVDLKILTGDSEPITRAICKMVNL 613
****98444444444444444459********************************************9975 PP
== domain 2 score: 82.8 bits; conditional E-value: 2.1e-26
TIGR01494 357 kaiakelglfarvsPeqKaeivellkkkgevvamiGDGvNDapALkaAdVGiais.....AkaaadivllddnlslvvlllkeGrktykrikklilyl 449
k+i + ++f +++P qK +i++ lk++++vv + GDG+NDap L+++dV i+++ Ak a+di+ll+++l +++ + +Gr+++ +i k+i+++
MMSYN1_0787 633 KKIVEDNNIFVKLNPLQKVKIIQVLKQNNHVVGYMGDGINDAPVLRQSDVAISVNnateiAKDASDIILLEKSLLVLEKGIIQGRTIFGNILKYIKIT 730
6899999***********************************************8777779************************************* PP
TIGR01494 450 liknliliilllvlsvlnllltslpa 475
++n+ ++++l+++v + +++pa
MMSYN1_0787 731 TASNFGNALSVLIGTVWLPFSPMAPA 756
*************9998887777776 PP
== domain 3 score: -5.0 bits; conditional E-value: 8.6
TIGR01494 144 lllallvfllvlielktflkiilralillviaiPiaLpvavtialavgd 192
++ al+++++ i + + + +++++ + i iPi++ + + +l+++
MMSYN1_0787 881 VIGALATIMAFSIVYISQIGSLVQLQSPGLIYIPISIAIIFSYCLIAQL 929
3333333333333333346678888888889999999999999988775 PP
>> TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 119.5 7.0 1.3e-37 2.6e-35 20 368 .. 35 420 .. 15 426 .. 0.73
2 ! 38.5 0.1 3.7e-13 7.6e-11 448 620 .. 465 626 .. 457 635 .. 0.86
3 ! 59.1 1.2 2.3e-19 4.8e-17 638 821 .. 618 797 .. 614 839 .. 0.83
Alignments for each domain:
== domain 1 score: 119.5 bits; conditional E-value: 1.3e-37
TIGR01106 20 lsleelerkyetdlskglsearaaellardgpnaltppkttpeyvkfarqlfgglslllwigailcflaygiqaaeeeepsed...nlylgvvlsavv 114
l+++e+ + + + + gl++++ + l++ g n l+ + f++ +fg ++++l + ++ f++y+ + ++++s+d +l ++++ ++v
MMSYN1_0787 35 LEQNEVLEIMQLQ-HFGLTNEQYESRLKKYGTNELKKK-RFNLIAEFLHAFFGPFNIVLLLISLYNFISYATNGFYQDTNSSDskfELVGALIILVMV 130
4555555555543.469******************975.5567899*************************998877766666211344455666667 PP
TIGR01106 115 ivtgvfsyyqeaksskilesfknlvpqqalvirdge........kl.............sinaeevvvgdlvevkggdripadlriisakglkvdnss 191
+ +g+ s+ q +s + + + +v + +ir+ + k+ +i+ +++v gdl+ + gd +pad+rii++ +l +++ss
MMSYN1_0787 131 LASGLASFIQSLRSHLVTKKISSIVKSTTNIIRHKNdedvedylKItkrnqldlirlgeEIDVKQLVPGDLIYLSSGDMLPADVRIIQSTDLFINQSS 228
779*******98886666666666666666665432111111111111111122222224678899******************************** PP
TIGR01106 192 ltgesepqtrspef..thenpletrniaffstncvegtargivvstgdrtvlgrias..lasglesgktpiaieiehfidiitgv...avflgvsff. 281
ltges p + ++ +n l+ ni++ t++v g a +v++t + t + i+ l +s t ++ ++ i v +v+l s++
MMSYN1_0787 229 LTGESIPVEKHANNkkNTNNILDLENICYTGTSVVSGSALAVVLATANDTYFSTISKaiLEKRPDSSFTKGIKQVTRMLLIFMLVmvpTVYLAKSIIg 326
*******988776511456889******************************9996511554555555555555554443333221114455544432 PP
TIGR01106 282 ils......lileytfleavifligiivanvpegllatvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnrmt.vahlwfd 368
+s i + +++a+ f +++ v pe l vt l+ a +++++ +vk+lea+++lg+ v+c+dktgtlt++++ v +l +d
MMSYN1_0787 327 TISsggsfdSIKDNPWFQAIFFAVAVAVGLTPEMLPMIVTTNLANGASKMSKQKVVVKQLEAIQSLGAIDVLCTDKTGTLTNDKIElVDYLRVD 420
222122221356778*******************************************************************998624455555 PP
== domain 2 score: 38.5 bits; conditional E-value: 3.7e-13
TIGR01106 448 ykkvveipfnstnkyqlsihekedasepryllvmkgaperilercssilikgkeqpldeelkeafqnaylelgglgervlgfchlylpeeqypegfkf 545
+k+ eipf+ n+ +l+i +d +e+r ++v kg+ e il+ c+ ++ + k l + +k y + g+r+lg + + ++q kf
MMSYN1_0787 465 ITKIDEIPFDF-NRRKLTIIF-DDENEKR-FMVTKGSVEEILNSCTRVIQDDKVVNLTDTFKRQIIAYYETINQQGKRLLGVAYKKIRDNQA----KF 555
689******85.777888754.4455555.5899************************************************9998888774....45 PP
TIGR01106 546 dvddvnfpvenlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiisegnetvediaa 620
+d e+l f+g+ s++d p+ + ++++ + g+ + ++tgd ++ai k v + +g t e+i a
MMSYN1_0787 556 SPKD----EESLIFMGFASFLDTPKPSTKQTIKLLKKYGVDLKILTGDSEPITRAICKMVNLDIKGLVTGEEIDA 626
5544....479*************************************765569******999999888888865 PP
== domain 3 score: 59.1 bits; conditional E-value: 2.3e-19
TIGR01106 638 vvhgsdlkdltseqldeilkehteivfartspqqkliivegcqrqgaivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtg 735
+v+g ++ ++ +l++i+++ +f + p qk+ i++ ++ + +v gdg+nd+p l+++d+ +++ a ++++k+a+d+ill+ + + g
MMSYN1_0787 618 LVTGEEIDAASEYELKKIVEDN--NIFVKLNPLQKVKIIQVLKQNNHVVGYMGDGINDAPVLRQSDVAISVNNA-TEIAKDASDIILLEKSLLVLEKG 712
5788888888888999999875..5899***************************************9999866.79********************* PP
TIGR01106 736 veegrlifdnlkksiaytltsnipeitpflifiivniplplgtvtilcidlgtdlvpaislayekaesdimkrkprnpkkdklvne 821
+ +gr if n+ k i t +sn + li + p+ il+ +l d+ +a ++ +s + r ++kd l
MMSYN1_0787 713 IIQGRTIFGNILKYIKITTASNFGNALSVLIGTVWLPFSPMAPAQILLQNLIYDF-SQFGVALDRVDSTFLTSPQRWQSKDLLPFT 797
************************999998876554445999999******9995.678999999999999988888888876443 PP
>> TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.9 0.5 6.2e-40 1.3e-37 3 426 .. 127 613 .. 125 622 .. 0.80
2 ! 62.3 1.2 4.5e-20 9.2e-18 427 525 .. 638 735 .. 615 763 .. 0.82
Alignments for each domain:
== domain 1 score: 127.9 bits; conditional E-value: 6.2e-40
TIGR01525 3 lLivlatlaalavslvlegalllvllllgelLeelakskasealsellelapeealllkeddseeevaveelqvgDivkVkpGekipvDGevieges. 99
l +vla +a +++ + ++ + ++ + ++ ++k e++++ l+ ++++ l l ee++v++l +gD + ++ G+ +p+D ++i+ +
MMSYN1_0787 127 LVMVLASGLASFIQSLRSHLVTKKISSIVKSTTNIIRHKNDEDVEDYLKITKRNQLDLIRL--GEEIDVKQLVPGDLIYLSSGDMLPADVRIIQSTDl 222
5799999999999999999999999*********************999988776666544..49***************************997752 PP
TIGR01525 100 evDesllTGEslpvekkegde............ViaGtvnlegsleikvtkvgedstlaqivklveeaqeskakiqrladklasyfvplvlaialltf 185
+++s+lTGEs+pvek+++++ + Gt +gs v ++++d+++++i k + e + +++ ++++++ + +++l++ ++
MMSYN1_0787 223 FINQSSLTGESIPVEKHANNKkntnnildleniCYTGTSVVSGSALAVVLATANDTYFSTISKAILEKR-PDSSFTKGIKQVTRMLLIFMLVMVPTVY 319
68*************987643333333333333689*****************************9965.567788899******************* PP
TIGR01525 186 lvwlalga...........lk.a.ealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdve 270
l+ ++g+ ++ + +a+ avav v +P L + +++ ++ + ++++k+ +++k ea++ l +++++ DKTGTLT+ k++++d
MMSYN1_0787 320 LAKSIIGTissggsfdsikDNpWfQAIFFAVAVAVGLTPEMLPMIVTTNLANGASKMSKQKVVVKQLEAIQSLGAIDVLCTDKTGTLTNDKIELVDYL 417
****9999******98875334479***********************************************************************99 PP
TIGR01525 271 vlkdse..seeellalaaalessseHplakaivkyakekslelkkve........................................veeveevpgkg 326
+++++ + + l + + ++ + p+ kaiv+y+++++ + + + + ++ +++ +
MMSYN1_0787 418 RVDKKAdpTLLKYLYINSYYQTGLKNPMDKAIVDYVNKHNHNFSI-QditkideipfdfnrrkltiifddenekrfmvtkgsveeilNSCTRVIQDDK 514
888777776678888999*******************96666643.3366888888888889999999998888888775555555322333334444 PP
TIGR01525 327 vsakvdgeeevrigneklleeleaeeekvkeeleeeeeqgktvvlvavdd...ellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavA 421
v + +d+ ++ +i+ + +++++ +++ + +++ +++++ + +d+ ++g+ + D+++p++k++i+ Lkk g ++ +ltGD + ++a+
MMSYN1_0787 515 VVNLTDTFKRQIIAYYE---TINQQGKRLLGVAYKKI-RDNQAKFSPKDEeslIFMGFASFLDTPKPSTKQTIKLLKKYGVDLKILTGDSEPITRAIC 608
44444433444444444...23333333333344433.455555655666333356778899***********************************9 PP
TIGR01525 422 kelgi 426
k + +
MMSYN1_0787 609 KMVNL 613
99886 PP
== domain 2 score: 62.3 bits; conditional E-value: 4.5e-20
TIGR01525 427 idevvaellPedKlakvkklqeeegkkvamvGDGiNDApALaaAdvGiamgsgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNlvlalvyn 524
++++ +l P +K+++++ l+++++ +v GDGiNDAp L ++dv+i++++++++a++a+D++ll+++l + + i r+++ +i + + ++++ n
MMSYN1_0787 638 DNNIFVKLNPLQKVKIIQVLKQNNH-VVGYMGDGINDAPVLRQSDVAISVNNATEIAKDASDIILLEKSLLVLEKGIIQGRTIFGNILKYIKITTASN 734
468999***************6554.5********************************************999999999988888887777776666 PP
TIGR01525 525 l 525
+
MMSYN1_0787 735 F 735
5 PP
>> TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 81.7 14.6 2.7e-26 5.4e-24 107 475 .. 16 422 .. 2 436 .. 0.71
2 ! 30.8 0.1 6.6e-11 1.3e-08 552 685 .. 465 601 .. 437 613 .. 0.75
3 ! 39.8 0.0 1.2e-13 2.5e-11 765 887 .. 624 898 .. 604 931 .. 0.77
Alignments for each domain:
== domain 1 score: 81.7 bits; conditional E-value: 2.7e-26
TIGR01657 107 yeekeqkifskleelvkeks...egdylkaagesn.GLtkgeiakrkelyGkneieikvksfleLlveevlkPfyvfqv.fsv...ilWlldeyy... 193
++k+ f + ++k++s + ++l++++ ++ GLt+ + ++r ++yG ne++ k +++ +++ + Pf++ ++ +s i + ++ +y
MMSYN1_0787 16 RHKKKT-HFANER-FIKQVSnleQNEVLEIMQLQHfGLTNEQYESRLKKYGTNELKKKRFNLIAEFLHAFFGPFNIVLLlISLynfISYATNGFYqdt 111
222222.243333.333333354778999999999*********************9999999999********976541443111555666666444 PP
TIGR01657 194 .........yyallilvlsvlsivlsvkeirkq...lkelrdmvaksqsveViRek.....................keetiasdelvpgDivlisrl 258
+ al+ilv++++s +s ++++++ k++ ++v++++++ iR+k e+i+ ++lvpgD++++s
MMSYN1_0787 112 nssdskfelVGALIILVMVLASGLASFIQSLRShlvTKKISSIVKSTTNI--IRHKndedvedylkitkrnqldlirLGEEIDVKQLVPGDLIYLS-- 205
3333333335689**********999999887622257777777777655..4444447777776666554465554457899*************.. PP
TIGR01657 259 eekllpcDavLlegs.civnEsmltGEsvpvlKvpieeeedsdeklqlkekskkhvLfgGTkvlqirpdegdtkvlaiVvrTGFstskGqLvrsilyp 355
+ +lp+D+ +++++ +n s+ltGEs+pv K + ++ ++ +++ +++ + GT v+ + +la+V+ T+ t+ + ++il
MMSYN1_0787 206 SGDMLPADVRIIQSTdLFINQSSLTGESIPVEKHANNK--KNTNNILD----LENICYTGTSVVS-------GSALAVVLATANDTYFSTISKAILEK 290
9*******9888775278***************99874..44343333....3458******984.......56999**********99999999976 PP
TIGR01657 356 kprvf..kf.ykdslkfilflavl........aligfiyvlielikne.rskkklilrsldiitivvPPaLPaelsvgvnvalarLkkkgifciePer 441
+p + k ++ + ++++f++v+ ++ig+i++ + ++ ++ + i+ ++ + + + P LP+ ++ +++ ++++k+++ + e
MMSYN1_0787 291 RPDSSftKGiKQVTRMLLIFMLVMvptvylakSIIGTISSGGSFDSIKdNPWFQAIFFAVAVAVGLTPEMLPMIVTTNLANGASKMSKQKVVVKQLEA 388
6543211221223334444444332223333346666666544444443444455666788888899999**************************** PP
TIGR01657 442 iniaGkidvvcFDKTGTLTedgldllgvqglsna 475
i+ G+idv+c DKTGTLT+d+++l + ++ ++
MMSYN1_0787 389 IQSLGAIDVLCTDKTGTLTNDKIELVDYLRVDKK 422
************************9887776655 PP
== domain 2 score: 30.8 bits; conditional E-value: 6.6e-11
TIGR01657 552 lsiirrfeFssalkrmsvivkteeerkkellafvKGaPEtiaellsk...........etvpsdykevlksytreGfRvlAlaskeLpkltlskaqdl 638
+ i + +F+ + ++ +i +e+e++ ++ +KG+ E i + + + +t + + ++++ ++G R+l++a+k++ + ++ k++
MMSYN1_0787 465 ITKIDEIPFDFNRRKLTIIFDDENEKR---FMVTKGSVEEILNSCTRviqddkvvnltDTFKRQIIAYYETINQQGKRLLGVAYKKIRD-NQAKFS-- 556
444566777777788888888777744...789********9999732222222222234556677789999****************6.444444.. PP
TIGR01657 639 sRdavEsnleflGllvlenklkpdtkevikeLkeasirvvmitGDnl 685
E +l f+G+ + kp+tk++ik Lk+ +++++ tGD+
MMSYN1_0787 557 -PK-DEESLIFMGFASFLDTPKPSTKQTIKLLKKYGVDLKILTGDSE 601
.33.47789************************************84 PP
== domain 3 score: 39.8 bits; conditional E-value: 1.2e-13
TIGR01657 765 llekskellkklllkvkVfARvaPeqKeelvetlkkldytvlmcGDGaNDcgALkqAdvGisLsea................................ 830
+ + s+ +lkk++ ++f ++ P qK ++++ lk+ + +v+ GDG ND L+q dv is +a
MMSYN1_0787 624 IDAASEYELKKIVEDNNIFVKLNPLQKVKIIQVLKQNNHVVGYMGDGINDAPVLRQSDVAISVNNAteiakdasdiilleksllvlekgiiqgrtifg 721
455566789********************************************************999999888888888888888888888888888 PP
TIGR01657 831 .................................................................................................. 830
MMSYN1_0787 722 nilkyikittasnfgnalsvligtvwlpfspmapaqillqnliydfsqfgvaldrvdstfltspqrwqskdllpfttingsistifdlitfaiagyyf 819
88888888888888888888888888888888888888888888888888888888888888888887777777777777777777777777777777 PP
TIGR01657 831 .....................eAsv.aapFtSklasiscVtnvireGRaaLvtslqvFkylalysliqflsvliLylkg 887
A++ a F+ l s V++++r ++s + + +++ +l++ ++++i+y+ +
MMSYN1_0787 820 gfitsynsaiaqnnsllaaqsLAQFhACWFIIGLLSQTFVFQILRTEQLPVIQSRSTWPVYVIGALATIMAFSIVYISQ 898
7777777777777777766654443133456666666777777777777777777777777777777777777777644 PP
>> TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.3 0.6 4.2e-23 8.6e-21 76 323 .. 178 464 .. 151 512 .. 0.73
2 ! 20.5 0.0 2.2e-07 4.4e-05 355 415 .. 558 620 .. 528 637 .. 0.76
3 ! 51.0 0.7 1.2e-16 2.5e-14 409 472 .. 640 705 .. 617 719 .. 0.84
Alignments for each domain:
== domain 1 score: 72.3 bits; conditional E-value: 4.2e-23
TIGR01511 76 klkpeeatllkkdvdveelqvgdilkvkpgekipvDGvvveGes.evdeslltGEslpvkkkvgde............viaGtvngegsllvkvtkvg 160
k ++ + l +++dv++l +gd + + +g+ +p+D ++++ + +++s ltGEs+pv+k+ +++ ++Gt +gs l v +++
MMSYN1_0787 178 KRNQLDLIRLGEEIDVKQLVPGDLIYLSSGDMLPADVRIIQSTDlFINQSSLTGESIPVEKHANNKkntnnildleniCYTGTSVVSGSALAVVLATA 275
444555667889****************************9765279************987654322222222222257999999**99999***** PP
TIGR01511 161 edtllaqivklveeAqqskakiqrlAdkvaslf......vpvviai.avltfvi............WllalevavtvliiaCPcalGLAiplvvlvat 239
+dt+ ++i k + e + + ++ + + l+ vp+v + +++ + W++a+ +av+v + P l + + + ++ ++
MMSYN1_0787 276 NDTYFSTISKAILEKRPDSSFTKGIKQVTRMLLifmlvmVPTVYLAkSIIGTISsggsfdsikdnpWFQAIFFAVAVAVGLTPEMLPMIVTTNLANGA 373
************999988887777655433333111111344432213333322344455556666******************************** PP
TIGR01511 240 glaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevtevkelses....llala...aaleasseHplakaiveyakGkgvegeveg 323
++++k+ v++k+ ea++++ +d+++ DKTGTLT+ k+e+++ ++++ ll+++ + ++ + p+ kaiv+y++ ++ + ++++
MMSYN1_0787 374 SKMSKQKVVVKQLEAIQSLGAIDVLCTDKTGTLTNDKIELVDYLRVDKKadptLLKYLyinSYYQTGLKNPMDKAIVDYVNKHNHNFSIQD 464
****************************************998766554111144432111334566678888888888887776666666 PP
== domain 2 score: 20.5 bits; conditional E-value: 2.2e-07
TIGR01511 355 akkgel..aavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgievlaevl 415
+++++l +++ d++kp++k++i+ Lkk g+ + +ltGD e +a+ k + +++ + v+
MMSYN1_0787 558 KDEESLifMGFASFLDTPKPSTKQTIKLLKKYGVDLKILTGDSEPITRAICKMVNLDIKGLVT 620
3333331145667789*************************************9998876665 PP
== domain 3 score: 51.0 bits; conditional E-value: 1.2e-16
TIGR01511 409 evlaevlPedKaakvkelqek..kvamvGDGiNDapaLaaadvgiaigagtdvaieaadvvllndl 472
+++ ++ P +K++ ++ l+++ +v +GDGiNDap L+++dv+i+++++t++a++a+d++ll++
MMSYN1_0787 640 NIFVKLNPLQKVKIIQVLKQNnhVVGYMGDGINDAPVLRQSDVAISVNNATEIAKDASDIILLEKS 705
4678899*********99875225778***********************************9975 PP
>> TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.1 0.6 8.7e-13 1.8e-10 4 184 .. 128 323 .. 125 329 .. 0.73
2 ! 26.7 0.0 2.6e-09 5.2e-07 185 255 .. 346 416 .. 342 455 .. 0.87
3 ! 47.9 0.4 9.2e-16 1.9e-13 317 471 .. 566 748 .. 561 758 .. 0.76
Alignments for each domain:
== domain 1 score: 38.1 bits; conditional E-value: 8.7e-13
TIGR01512 4 LmvvaalgavavgellegalllllfslgetLeelaskrakealkaLlelaPdt...arrleeeVaveelkvgdvvvVkkGervPvDGevlsges.sld 97
+mv+a a ++++l ++ + s+ ++ ++ ++ e+++ l+ + ++ rl ee++v++l +gd + +++G+ +P+D ++++ + ++
MMSYN1_0787 128 VMVLASGLASFIQSLRSHLVTKKISSIVKSTTNIIRHKNDEDVEDYLKITKRNqldLIRLGEEIDVKQLVPGDLIYLSSGDMLPADVRIIQSTDlFIN 225
67778888888888888888888888888888888888888888766554443111456789***************************99876168* PP
TIGR01512 98 esalTGEsvpvekakgde............vlaGainldgvlkievtkeaedstiakivklveeaqsekaktqrlidrlaekytlvvlliallialvs 183
+s+lTGEs+pvek+++++ + G+ ++g+ v ++a+d+ +++i k + e +++++ i ++ + +++++l+++ ++l++
MMSYN1_0787 226 QSSLTGESIPVEKHANNKkntnnildleniCYTGTSVVSGSALAVVLATANDTYFSTISKAILEKR-PDSSFTKGIKQVTRMLLIFMLVMVPTVYLAK 322
************987654222332222222356777777777777888888888888888887754.4566777888888888888888877777766 PP
TIGR01512 184 s 184
s
MMSYN1_0787 323 S 323
5 PP
== domain 2 score: 26.7 bits; conditional E-value: 2.6e-09
TIGR01512 185 llvalvlLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklkvsdv 255
++a+++ v +P L + v+ l+ + s+ +++ +++k+ +++ +l+ ++ + +DKTGTLT+ k++++d+
MMSYN1_0787 346 IFFAVAVAVGLTPEMLPMIVTTNLANGASKMSKQKVVVKQLEAIQSLGAIDVLCTDKTGTLTNDKIELVDY 416
56777888888888888888899999**************************************9998875 PP
== domain 3 score: 47.9 bits; conditional E-value: 9.2e-16
TIGR01512 317 lglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeel.........Gdevha.................ellPedKveivkelke... 385
+g ++ D+++++++++i+ Lkk gv l +ltGD+e ++++ + + G+e+ a +l P +Kv+i++ lk+
MMSYN1_0787 566 MGFASFLDTPKPSTKQTIKLLKKYGV-DLKILTGDSEPITRAICKMVnldikglvtGEEIDAaseyelkkivednnifvKLNPLQKVKIIQVLKQnnh 662
56777889999999999999999996.6689999999999888876544445444576665423222222222222222689********98876333 PP
TIGR01512 386 .vamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvvlaltiilvlillallgvlpl 471
v +GDGiNDap L ++dv+i++ +++++a +++D++ll+++l l++ i +r++ ++ + + + ++ + l l+g + l
MMSYN1_0787 663 vVGYMGDGINDAPVLRQSDVAISVN-NATEIAKDASDIILLEKSLLVLEKGIIQGRTIFGNILKYIKITTASNFGNALSVLIGTVWL 748
355679*******************.99*********************99999999999998888888888777777777777665 PP
>> TIGR01497 kdpB: K+-transporting ATPase, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.4 6.4 3.7e-25 7.5e-23 117 550 .. 189 703 .. 169 714 .. 0.73
Alignments for each domain:
== domain 1 score: 78.4 bits; conditional E-value: 3.7e-25
TIGR01497 117 kkvpadelkkGdvvlveaGdvipadGevieGva.svdesaitGesapvlkesGg........dfasvt.GGtrivsdwlvvevtadpGesfldrmi.a 203
++++ ++l Gd++++ +Gd++pad +i+ + +++s++tGes pv k + + d+ + Gt +vs v a+ ++++ + a
MMSYN1_0787 189 EEIDVKQLVPGDLIYLSSGDMLPADVRIIQSTDlFINQSSLTGESIPVEKHANNkkntnnilDLENICyTGTSVVSGSALAVVLATANDTYFSTISkA 286
578899***********************9875279************98765422223333555553379****99887778888888877665425 PP
TIGR01497 204 lve...Gaerrktpneia...ltvllvaltlvfll..vvatly...plaayagvkisvsvl..vallvalipttiGGllsaiGiaGmdrvarfnviat 288
++e ++ +k +++ l +lv + v+l ++ t+ ++ + +++ +++ va+ v l p + ++++ G +++ + v+
MMSYN1_0787 287 ILEkrpDSSFTKGIKQVTrmlLIFMLVMVPTVYLAksIIGTISsggSFDSIKDNPWFQAIFfaVAVAVGLTPEMLPMIVTTNLANGASKMSKQKVVVK 384
5552223556666666651114445555556666422344554112456666777655554227778889*****9999999999************* PP
TIGR01497 289 sGraveaaGdvdtlvldktGtitlGnrlaeefipvqGadkkkladvavlaslad...dtpeGksivelakklgiredtkksesaefveftaktrmsGi 383
a+++ G +d+l dktGt+t +++ v+ + +l ++ ++ s + + p k+iv +k + + ++ +++ ++f + r i
MMSYN1_0787 385 QLEAIQSLGAIDVLCTDKTGTLTNDKIELVDYLRVDKKADPTLLKYLYINSYYQtglKNPMDKAIVDYVNKHNHNFSIQDITKIDEIPFDFNRRKLTI 482
***************************************************987333579*******************************9999999 PP
TIGR01497 384 nlengr....avrkGavdai....kk.....rveerkGripkdldeavekvakqGgtplvvv....vdnk............iyGviylkdivksGik 452
+++ + +v kG+v+ i + +v + ++ +++ +e + +qG l v+ dn+ +G + d+ k+ k
MMSYN1_0787 483 IFDDENekrfMVTKGSVEEIlnscTRviqddKVVNLTDTFKRQIIAYYETINQQGKRLLGVAykkiRDNQakfspkdeesliFMGFASFLDTPKPSTK 580
8875432233799****9883332231111133445566778888999*******99998852222455422333333333236888999******** PP
TIGR01497 453 erfeqlrklGiktimltGdn.rltaav.......i...........akeaG....v.d.dfiaeatpedkievikkeqaeGklvamtGdGtndapala 525
+ ++ l+k G+ +ltGd ++t a+ i a e v d +++ + +p +k+++i+ +++ ++v GdG ndap l
MMSYN1_0787 581 QTIKLLKKYGVDLKILTGDSePITRAIckmvnldIkglvtgeeidaASEYElkkiVeDnNIFVKLNPLQKVKIIQVLKQNNHVVGYMGDGINDAPVLR 678
*******************7256655311111110111111111111221111112111244567899****************************** PP
TIGR01497 526 qadvgvamnsGtqaakeaanmvdld 550
q+dv++++n t+ ak+a++++ l+
MMSYN1_0787 679 QSDVAISVNNATEIAKDASDIILLE 703
*******************998776 PP
>> TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.4 0.7 5.2e-05 0.011 11 145 .. 97 233 .. 94 247 .. 0.67
2 ! 20.5 2.6 9.5e-08 1.9e-05 191 378 .. 241 413 .. 236 417 .. 0.82
3 ! 9.0 0.6 0.00028 0.057 516 677 .. 471 616 .. 443 640 .. 0.66
4 ! 10.3 0.4 0.00012 0.024 751 795 .. 644 687 .. 639 708 .. 0.85
Alignments for each domain:
== domain 1 score: 11.4 bits; conditional E-value: 5.2e-05
TIGR01652 11 YtvltflPknlfeqfkrvaniyFLvvallqavpalsvt..nrgtsivpLavvllvtaiKeaieDirrrksDkevNnkkvevlees....akfkeikwk 102
Y+++++ ++++ + + Lv al+ v l+ + + s+ +v ++ i i r+k+D++v + + + +++ +ei k
MMSYN1_0787 97 YNFISYATNGFYQDTNSSDSKFELVGALIILVMVLASGlaSFIQSLRSHLVTKKISSIVKSTTNIIRHKNDEDVEDYLKITKRNQldliRLGEEIDVK 194
66666666666666666666666666666555544332002233333334444566666667778889999988876555444443333566899*** PP
TIGR01652 103 dlkVGdivkvkkdeeiPaDllllssseedGvcyveTknLDGEt 145
+l Gd++ + +++ +PaD+ +++s++ +++ + L GE+
MMSYN1_0787 195 QLVPGDLIYLSSGDMLPADVRIIQSTD----LFINQSSLTGES 233
*************************98....577777777776 PP
== domain 2 score: 20.5 bits; conditional E-value: 9.5e-08
TIGR01652 191 egkakreeplsvdnvllrgctlrntkwvlgvVvytGhdtklmkNatkapsKr..skiekelnlliiilfllllvlclissvaasivsdkeeksrfyle 286
++k + ++ l +n+ ++g+++ + +l+vV+ t +dt +++ Kr s +k + + +l +++lv++ + +a+si+ + ++ +f
MMSYN1_0787 241 NNKKNTNNILDLENICYTGTSVVS-GSALAVVLATANDTYFSTISKAILEKRpdSSFTKGIKQVTRMLLIFMLVMVPTVYLAKSIIGTISSGGSFDSI 337
566667899*************98.889*************999999988886688999999999999999999999999999999875555444443 PP
TIGR01652 287 leksrnaaaegfvslltalilfssliPiSLyvslelvkvvqalfinsDlelydektdtpasvrtsnlneeLGqveyifSDKTGTLTqNkmef 378
k + + +++f+ + +a+ l +++P+ v+ +l+ ++ ++ ++ v++++ + LG ++ + DKTGTLT+ k+e+
MMSYN1_0787 338 --KDNPWFQAIFFAVAVAVGLTPEMLPM--IVTTNLANG--------ASKMSKQ----KVVVKQLEAIQSLGAIDVLCTDKTGTLTNDKIEL 413
..33689999999999999999999995..566666543........3456655....5789999999*******************99987 PP
== domain 3 score: 9.0 bits; conditional E-value: 0.00028
TIGR01652 516 leFnSsrKRmsvivrlpddellLlcKGADsvifkrlseesekvlektkehlekyaseGlRTLviarrelseeeYeewnekyeeAstalkdreekleev 613
++F+ +r+++++i+ +++++ +++KG ++l++ ++ +++ ++ +++ R ++ + +++++ + y+ ++d+++k +
MMSYN1_0787 471 IPFDFNRRKLTIIFDDENEKRFMVTKGSVE---EILNSCTRVIQD---DKVVNLTDTFKRQIIAYYETINQQGKRLLGVAYK----KIRDNQAKFS-- 556
578888888888888888888888888644...444443323333...2333444333455555556666666555555444....4555555544.. PP
TIGR01652 614 aeliEkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigysckLlseeme 677
+ E+ L+ +g + D + ++ti+lL++ g+ + +LTGD ++i ck+++ + +
MMSYN1_0787 557 -PKDEESLIFMGFASFLDTPKPSTKQTIKLLKKYGVDLKILTGDSEPITRAI---CKMVNLDIK 616
.446999*************************************98877777...555555555 PP
== domain 4 score: 10.3 bits; conditional E-value: 0.00012
TIGR01652 751 RvsPsqKaavvklvkkslskvtlaigdGaNDVsmiqeAdvGvGis 795
+ P+qK ++++++k++ ++v+ +gdG ND ++ + dv + ++
MMSYN1_0787 644 KLNPLQKVKIIQVLKQN-NHVVGYMGDGINDAPVLRQSDVAISVN 687
568************99.899999****************99876 PP
>> TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.3 0.1 6.9e-09 1.4e-06 24 174 .. 510 677 .. 499 680 .. 0.81
Alignments for each domain:
== domain 1 score: 26.3 bits; conditional E-value: 6.9e-09
TIGR01488 24 lgtndevkeltrlvlegrisfedrlgrrlkllersl.............leelak.......eflakevairpgarelikwlkekGiklvivSggldf 101
++ d+v +lt++++++ i +++ +++++k+l + + ++++ +fl++ ++p+++++ik lk+ G++l i +g +
MMSYN1_0787 510 IQ-DDKVVNLTDTFKRQIIAYYETINQQGKRLLGVAykkirdnqakfspK-DEESlifmgfaSFLDT---PKPSTKQTIKLLKKYGVDLKILTGDSEP 602
55.489************************99999988888888888852.3333455643333333...46************************** PP
TIGR01488 102 lveklaeklgidk...vfanelelddnGlltgriege....vnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlpll 174
+ +++ + ++d v + e+ ++l i++ v + +K+k ++ +l++++ + ++GD+ nD p l
MMSYN1_0787 603 ITRAICKMVNLDIkglVTGEEIDAASEYELKK-IVEDnnifVKLNPLQKVKIIQ-VLKQNNH---VVGYMGDGINDAPVL 677
************99988888888866656666.444247999************.6777766...47799******9987 PP
>> TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0175-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.2 0.0 0.02 4 24 58 .. 580 614 .. 576 634 .. 0.82
2 ! 17.6 1.3 3e-06 0.00061 135 202 .. 637 700 .. 613 705 .. 0.76
Alignments for each domain:
== domain 1 score: 5.2 bits; conditional E-value: 0.02
TIGR01487 24 ieairklekkGikvvlvtGnevkfvealavligvs 58
+ i+ l+k G+ + ++tG + ++ +a+ ++++++
MMSYN1_0787 580 KQTIKLLKKYGVDLKILTGDSEPITRAICKMVNLD 614
5789***********************98776543 PP
== domain 2 score: 17.6 bits; conditional E-value: 3e-06
TIGR01487 135 sgyavhilkkgvdKgvgvkklkellGlkkeevaaiGDsenDldlFrvagfkvavanAddelKeiaDlv 202
+++ ++ ++ +K + +++lk+ + v +GD+ nD ++ r+ + ++v nA++ K+++D++
MMSYN1_0787 637 EDNNIFVKLNPLQKVKIIQVLKQNN----HVVGYMGDGINDAPVLRQSDVAISVNNATEIAKDASDII 700
5667778888888877777777754....45569********************************98 PP
>> TIGR00338 serB: phosphoserine phosphatase SerB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.8 0.7 2.2e-06 0.00045 90 213 .. 579 707 .. 574 713 .. 0.90
Alignments for each domain:
== domain 1 score: 17.8 bits; conditional E-value: 2.2e-06
TIGR00338 90 veelvkkLkekgykvaviSGgFdlvaeklkekLglda...vfaNrLeve.dgkltGkvegeivdesakaktllkllekegislektvavGDGanDlsm 183
++++k Lk++g+ + ++ G + ++ + + +ld v + +++ + +l ve + + + ++k+++ + + + + +GDG nD ++
MMSYN1_0787 579 TKQTIKLLKKYGVDLKILTGDSEPITRAICKMVNLDIkglVTGEEIDAAsEYELKKIVEDNNIFVKLNPLQKVKIIQVLKQNNHVVGYMGDGINDAPV 676
689*********************************98889999**9998999*9999999999998888888999988888888889********** PP
TIGR00338 184 ikaAglgiaf.nakpvlkekadiviekkdlt 213
+++ ++ i+ na ++ k++ di + +k+l
MMSYN1_0787 677 LRQSDVAISVnNATEIAKDASDIILLEKSLL 707
********97369999999999999888876 PP
>> TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.8 3.1 0.00021 0.042 83 133 .. 652 702 .. 578 705 .. 0.66
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 0.00021
TIGR01670 83 eileklalkdeevafiGddlvdkevlekvGlsvavkdaheelrkvadyvtr 133
+i + l+ +++ v+++Gd ++d +vl++ +++ v++a e ++ d+++
MMSYN1_0787 652 KIIQVLKQNNHVVGYMGDGINDAPVLRQSDVAISVNNATEIAKDASDIILL 702
3445555566679**************************999999999875 PP
>> TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.1 1.4e-05 0.0028 187 225 .. 655 691 .. 645 705 .. 0.76
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 1.4e-05
TIGR01486 187 qlykekekaikvvglGDspnDlpllevvdlavvvkgkdg 225
q +k++ + +v +GD+ nD+p+l+++d+a+ v+++ +
MMSYN1_0787 655 QVLKQN--NHVVGYMGDGINDAPVLRQSDVAISVNNATE 691
444443..4455559*******************97654 PP
>> TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.6 0.0 9.2 1.9e+03 74 101 .. 534 561 .. 526 566 .. 0.72
2 ? 11.5 0.1 0.00022 0.044 181 215 .. 652 686 .. 646 687 .. 0.85
Alignments for each domain:
== domain 1 score: -3.6 bits; conditional E-value: 9.2
TIGR02463 74 eeeprlilGksyeilrlkLeklseelsf 101
+++++ lG y+ +r + k+s + ++
MMSYN1_0787 534 NQQGKRLLGVAYKKIRDNQAKFSPKDEE 561
3568889999999999888877766655 PP
== domain 2 score: 11.5 bits; conditional E-value: 0.00022
TIGR02463 181 alkkalnekdvkvlgLGDspnDlpLLevaDlavvv 215
++++ l++++ v +GD+ nD+p+L +D+a+ v
MMSYN1_0787 652 KIIQVLKQNNHVVGYMGDGINDAPVLRQSDVAISV 686
5778888888777779****************976 PP
>> TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.9 0.0 6.5 1.3e+03 122 162 .. 434 479 .. 407 500 .. 0.66
2 ? -2.3 0.0 4.2 8.6e+02 85 124 .. 490 530 .. 478 551 .. 0.78
3 ? 11.0 0.1 0.00037 0.075 150 221 .] 628 686 .. 601 686 .. 0.78
Alignments for each domain:
== domain 1 score: -2.9 bits; conditional E-value: 6.5
TIGR01484 122 aihysgqkeleqeldskllerlekigir.......kdleleailsrsn 162
+ +y++ +l+ ++d+++ ++++k+ + k+ e+ + ++r++
MMSYN1_0787 434 NSYYQT--GLKNPMDKAIVDYVNKHNHNfsiqditKIDEIPFDFNRRK 479
455554..3788888888888888887776666665555555555544 PP
== domain 2 score: -2.3 bits; conditional E-value: 4.2
TIGR01484 85 aevllseekelkeieailksls.eryvgtfvedkalevaih 124
+++ +++ ++++++++++ + +v+ ++++k + +a++
MMSYN1_0787 490 KRFMVTKGSVEEILNSCTRVIQdDKVVNLTDTFKRQIIAYY 530
56777777888899999999997777788888888887776 PP
== domain 3 score: 11.0 bits; conditional E-value: 0.00037
TIGR01484 150 kdleleailsrsnalqkegetllevlpagvdKgkalqalleelnlkkeeilafGDsgNDeemlevaglavav 221
+ +el+ i++ +++ ++ + p +K k++q l + + + ++GD+ ND+++l++ ++a++v
MMSYN1_0787 628 SEYELKKIVE-------DNNIFVKLNP--LQKVKIIQVLKQNNH----VVGYMGDGINDAPVLRQSDVAISV 686
4445555543.......4666666666..99******9999999....999***************999986 PP
>> TIGR00099 Cof-subfamily: Cof-like hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.9 0.0 9.5 1.9e+03 92 137 .. 130 174 .. 103 184 .. 0.62
2 ? -2.6 0.2 3.7 7.6e+02 77 102 .. 442 463 .. 431 532 .. 0.54
3 ? 3.0 0.0 0.072 15 18 56 .. 576 614 .. 573 645 .. 0.85
4 ? 10.9 0.3 0.00029 0.059 205 243 .. 662 700 .. 646 714 .. 0.85
Alignments for each domain:
== domain 1 score: -3.9 bits; conditional E-value: 9.5
TIGR00099 92 lkklgldvilysddsiyfsknkneifeiekkklaepkkevvknqll 137
+ +gl+ ++ s s ++k+ + i++ ++ + ++++e v++ +l
MMSYN1_0787 130 VLASGLASFIQSLRSHLVTKKISSIVKSTTNIIRHKNDEDVED-YL 174
5555555666666666666666666666666666666666655.44 PP
== domain 2 score: -2.6 bits; conditional E-value: 3.7
TIGR00099 77 kkpldldlveeilnilkklgldvily 102
k+p+d+ +v+ ++++ +++ +
MMSYN1_0787 442 KNPMDKAIVDYVNKHNHNFS----IQ 463
44444444444444444443....32 PP
== domain 3 score: 3.0 bits; conditional E-value: 0.072
TIGR00099 18 spetkealaklrekGikvvlaTGRsykevkeilkelgld 56
+p+tk++++ l++ G+ + ++TG s ++ i k ++ld
MMSYN1_0787 576 KPSTKQTIKLLKKYGVDLKILTGDSEPITRAICKMVNLD 614
589********************9988777777766665 PP
== domain 4 score: 10.9 bits; conditional E-value: 0.00029
TIGR00099 205 enviaiGDseNDieMleaagvgvamgnaneelkaladyv 243
v GD+ ND++ l +v++++ na+e +k+++d +
MMSYN1_0787 662 HVVGYMGDGINDAPVLRQSDVAISVNNATEIAKDASDII 700
455568***************************999876 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (942 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 325 (0.0724153); expected 89.8 (0.02)
Passed bias filter: 116 (0.0258467); expected 89.8 (0.02)
Passed Vit filter: 28 (0.00623886); expected 4.5 (0.001)
Passed Fwd filter: 22 (0.00490196); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 22 [number of targets reported over threshold]
# CPU time: 0.90u 0.17s 00:00:01.07 Elapsed: 00:00:00.83
# Mc/sec: 1629.82
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0787 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0789 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0789.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0789/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0789 [L=99]
Description: atpC 4=Probable Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-13 49.3 0.1 1.3e-13 49.1 0.1 1.0 1 TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit
2.7e-10 38.2 0.0 3.2e-10 38.0 0.0 1.0 1 TIGR03166 alt_F1F0_F1_eps: alternate F1F0 ATPase, F1 subunit
Domain annotation for each model (and alignments):
>> TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.1 0.1 5.6e-17 1.3e-13 2 90 .. 3 91 .. 2 94 .. 0.94
Alignments for each domain:
== domain 1 score: 49.1 bits; conditional E-value: 5.6e-17
TIGR01216 2 lklevvtpeke.iysgevesvilpgseGelGilpgHaplltalkpGvvrirkenkeeeliavsgGflevepdkVtiLadeavrakeidea 90
+kl+++tp+++ + ++ev ++l++ G++G+l + ap +tal++ ++++++n i v +G + + +++ +i+ ++ + +++ d++
MMSYN1_0789 3 IKLKILTPNGTfVENKEVDIINLKTIDGDIGVLANMAPFVTALRNDTLNFKEKNT-YTYIHVDQGLVVISKNQCKIITENLYLVDKQDRE 91
799******9835679***********************************8888.99***************************99976 PP
>> TIGR03166 alt_F1F0_F1_eps: alternate F1F0 ATPase, F1 subunit epsilon
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.0 0.0 1.4e-13 3.2e-10 1 79 [. 4 81 .. 4 89 .. 0.92
Alignments for each domain:
== domain 1 score: 38.0 bits; conditional E-value: 1.4e-13
TIGR03166 1 rlkillPaevvldkekvtkivaEtesGsfgllprrvDlvaalvpgiliyetedggesyvAvdeGiLvkkgaevevsvre 79
+lkil+P+ ++++++v+ i t +G g+l++ + +v+al+ l ++++ ++ +y+ vd+G++v +++ ++ +++
MMSYN1_0789 4 KLKILTPNGTFVENKEVDIINLKTIDGDIGVLANMAPFVTALRNDTLNFKEK-NTYTYIHVDQGLVVISKNQCKIITEN 81
69***********************************************976.6789*********9999998887665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (99 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 160 (0.0356506); expected 89.8 (0.02)
Passed bias filter: 112 (0.0249554); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 646.22
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0789 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0790 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0790.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0790/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0790 [L=475]
Description: atpD 4=Probable Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-240 796.6 2.5 1.9e-240 796.4 2.5 1.0 1 TIGR01039 atpD: ATP synthase F1, beta subunit
1.4e-169 562.5 0.2 1.6e-169 562.3 0.2 1.0 1 TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit
1.4e-71 239.4 1.0 1.8e-71 239.2 1.0 1.0 1 TIGR01026 fliI_yscN: ATPase, FliI/YscN family
6.7e-70 233.8 0.1 8.8e-70 233.5 0.1 1.1 1 TIGR02546 III_secr_ATP: type III secretion apparatus H+-tran
1.3e-68 229.6 0.1 1.7e-68 229.3 0.1 1.1 1 TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
1.2e-67 226.7 0.4 1.5e-67 226.4 0.4 1.0 1 TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
1.2e-66 223.1 0.2 1.6e-66 222.7 0.2 1.1 1 TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
5e-45 151.7 1.4 6.4e-45 151.4 1.4 1.0 1 TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
1.1e-42 144.2 0.6 6.9e-38 128.3 0.0 2.0 2 TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
8.9e-39 131.5 1.0 1.2e-38 131.1 1.0 1.0 1 TIGR00962 atpA: ATP synthase F1, alpha subunit
8.3e-38 128.0 0.4 1.3e-37 127.4 0.4 1.2 1 TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
3e-37 126.4 0.7 3.6e-37 126.1 0.7 1.0 1 TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit
7.4e-36 121.8 0.6 6e-34 115.5 0.0 2.0 2 TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
1.3e-11 41.9 0.0 2.8e-11 40.9 0.0 1.3 1 TIGR00767 rho: transcription termination factor Rho
0.0043 14.6 0.1 0.03 11.8 0.0 2.0 2 TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase
------ inclusion threshold ------
0.015 10.9 0.0 0.022 10.3 0.0 1.1 1 TIGR03928 T7_EssCb_Firm: type VII secretion protein EssC
0.031 11.7 0.3 0.4 8.1 0.0 2.3 2 TIGR00073 hypB: hydrogenase accessory protein HypB
0.51 6.4 3.7 0.21 7.7 0.9 1.6 2 TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer AT
Domain annotation for each model (and alignments):
>> TIGR01039 atpD: ATP synthase F1, beta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 796.4 2.5 7.6e-243 1.9e-240 2 460 .. 15 470 .. 14 472 .. 0.99
Alignments for each domain:
== domain 1 score: 796.4 bits; conditional E-value: 7.6e-243
TIGR01039 2 kGkvvqvigavvdvefeesklpkiydalkvklekeseelvlevaqhlGddlvraialdstdGlvrglevkdtgkpievpvGkevlGrilnvlGepide 99
Gkv+qv+g+vvdv+f+e+++pkiydal v+++ + +lvlev+q++Gd++vr+ia+++t+Gl+rgl+v++t++pi p G evlGr++nvlG+pide
MMSYN1_0790 15 IGKVIQVLGPVVDVKFSENNIPKIYDALIVDNNGK--KLVLEVEQNIGDEIVRTIAMGPTEGLKRGLDVINTNSPITAPTGIEVLGRMFNVLGDPIDE 110
69***************************998876..9************************************************************ PP
TIGR01039 100 kgevkkkeklsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvGktvliqelinniakehsGlsvfaGvGertreGndlylelke 197
k +++ k + +ih++ap++ee+ t++eiletGikvidl+ p++kGGk+glfGGaGvGkt+liqelinniak+h+G+svfaGvGertreGndly+e++e
MMSYN1_0790 111 KPDLDVK-REPIHKDAPKYEELVTTTEILETGIKVIDLMIPFTKGGKVGLFGGAGVGKTILIQELINNIAKAHNGVSVFAGVGERTREGNDLYHEFIE 207
*999865.78**************************************************************************************** PP
TIGR01039 198 sgvldkvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrlpsavGyqptlatemGelqeritstkkgsits 295
+gvl+k++lv+GqmneppGar+rvaltglt+aeyfrd+++ dvllfidnifrftqaGsevsallGr+psavGyqptl+temG+lqeritstk+gsits
MMSYN1_0790 208 AGVLNKTCLVFGQMNEPPGARMRVALTGLTIAEYFRDQKNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKNGSITS 305
************************************************************************************************** PP
TIGR01039 296 vqavyvpaddltdpapattfahldattvlsrkiaelGiypavdpldstsrlldpevvGeehyevarevqeilqrykelqdiiailGldelseedklvv 393
vqavyvpaddltdpapattf+hlda++vl+r+ia+lGiypavdpl+s+sr+ldpe+vG+ehy++a +vq lq+y++lq iiailG+delseedkl+v
MMSYN1_0790 306 VQAVYVPADDLTDPAPATTFTHLDARIVLDRSIASLGIYPAVDPLASSSRVLDPEIVGQEHYDIALRVQIALQKYQDLQSIIAILGMDELSEEDKLIV 403
************************************************************************************************** PP
TIGR01039 394 erarkierflsqpffvaevftGspGkyvklkdtiegfkeileGkyddlpeqafylvGsieevvekak 460
+rarki++flsq+ffv e+ftG pG +vk++dt+++fk+il+G+ d +pe f + +i++v+ek +
MMSYN1_0790 404 QRARKIRNFLSQSFFVGEKFTGRPGVFVKVNDTVRSFKSILDGEVDYIPETYFLYSSTIDDVIEKYN 470
****************************************************************965 PP
>> TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 562.3 0.2 6.5e-172 1.6e-169 1 445 [. 16 461 .. 16 465 .. 0.97
Alignments for each domain:
== domain 1 score: 562.3 bits; conditional E-value: 6.5e-172
TIGR03305 1 gkvvavrgsivdvrf.eeelpalysvlkagre.kevvvevlaqldakkvrgialtateglargmavkdsgaplkapvgkeilsrvfdvfgntidrres 96
gkv+ v g +vdv+f e+++p +y l ++++ k++v+ev +++ + vr+ia+ +tegl rg v ++ +p+ ap g e+l+r+f+v+g++id++ +
MMSYN1_0790 16 GKVIQVLGPVVDVKFsENNIPKIYDALIVDNNgKKLVLEVEQNIGDEIVRTIAMGPTEGLKRGLDVINTNSPITAPTGIEVLGRMFNVLGDPIDEK-P 112
89*************44579****99988875278***********************************************************86.6 PP
TIGR03305 97 lkdvkwrsvhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelihnlvsqeegvslfcgigercregeelyremkeagv 194
dvk +h+ p+ ++ ++++e++etgik+id+++p+ +ggk glfggagvgkt+l+ eli n+ + ++gvs+f g+ger reg++ly e+ eagv
MMSYN1_0790 113 DLDVKREPIHKDAPKYEELVTTTEILETGIKVIDLMIPFTKGGKVGLFGGAGVGKTILIQELINNIAKAHNGVSVFAGVGERTREGNDLYHEFIEAGV 210
779*********************************************************************************************** PP
TIGR03305 195 ldntvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeriattedaaitsiqa 292
l++t +vfgqmneppgar+rv l+ lt+aeyfrd+++ dvll+idnifrf qagsevs llg++ps +gyqptl+te+ +l+eri++t++++its+qa
MMSYN1_0790 211 LNKTCLVFGQMNEPPGARMRVALTGLTIAEYFRDQKNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKNGSITSVQA 308
************************************************************************************************** PP
TIGR03305 293 vyvpaddftdpaavhtfshlsaslvlsrkraseglypaidplkstsklatpsivgerhyklarevrrvlaqyeelkdiiamlgleelskedrrvvara 390
vyvpadd+tdpa tf+hl a +vl r as g+ypa+dpl+s+s+++ p+ivg+ hy++a +v+ l +y++l+ iia+lg++els+ed+ +v+ra
MMSYN1_0790 309 VYVPADDLTDPAPATTFTHLDARIVLDRSIASLGIYPAVDPLASSSRVLDPEIVGQEHYDIALRVQIALQKYQDLQSIIAILGMDELSEEDKLIVQRA 406
************************************************************************************************** PP
TIGR03305 391 rrlerfltqpfftteqftglkgktvsledaldgcerilkdefedypekalymige 445
r++ fl+q ff e+ftg g +v ++d++ + il++e + pe+ + +
MMSYN1_0790 407 RKIRNFLSQSFFVGEKFTGRPGVFVKVNDTVRSFKSILDGEVDYIPETYFLYSST 461
**********************************************987655555 PP
>> TIGR01026 fliI_yscN: ATPase, FliI/YscN family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 239.2 1.0 7.1e-74 1.8e-71 14 423 .. 5 418 .. 1 426 [. 0.90
Alignments for each domain:
== domain 1 score: 239.2 bits; conditional E-value: 7.1e-74
TIGR01026 14 keadleavkvvGrvkkvkgllieakgpqasvGevclierkgsekkevvaevvg.fegekvllmpyeevegveagskvlaknealsvkvgegllGrvld 110
+++d + + +G+v +v g +++ k + ++ ++ +++ k++v ev + +e v ++ +eg++ g v+ +n++++ ++g ++lGr+ +
MMSYN1_0790 5 NTTDKKKNQSIGKVIQVLGPVVDVKFSENNIPKIYDALIVDNNGKKLVLEVEQnIGDEIVRTIAMGPTEGLKRGLDVINTNSPITAPTGIEVLGRMFN 102
5667778899*************9999999988765554456666788888651556778899*********************************** PP
TIGR01026 111 alGkplDekgkaldnvekelitapinPlkrakieevlstGvrsidalltvgkGqrlGifaGsGvGkstLlG.miar..ateadvnvialiGerGrevk 205
lG+p+Dek+ ld +++ + + ++ + + +e+l+tG+++id +++ +kG ++G+f G+GvGk L+ +i +++ v+v a +Ger re +
MMSYN1_0790 103 VLGDPIDEKP-DLDVKREPIHKDAPKYEELVTTTEILETGIKVIDLMIPFTKGGKVGLFGGAGVGKTILIQeLINNiaKAHNGVSVFAGVGERTREGN 199
*********8.89999999999988888889999*********************************9986245442233446*************** PP
TIGR01026 206 efiekdLgeeglkrsvvvvatsDespllrlkgayvataiaeyfrdqG.kdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraGa 302
+ + + + l+++ +v +e+p +r++ a+++ +iaeyfrdq dvll++D + rf +a e++ +G P++ Gy P+ +++ l er +
MMSYN1_0790 200 DLYHEFIEAGVLNKTCLVFGQMNEPPGARMRVALTGLTIAEYFRDQKnMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITS 297
*********************************************86269************************************************ PP
TIGR01026 303 sekGsitafytvLveGDDlnePiaDevrailDGhivLsralaerglyPaidvlasisrllk.aivseekkkavrkfrellskykenedLiriGaYkkG 399
+++Gsit++ +v v DDl++P ++ + lD ivL+r++a+ g+yPa+d las sr+l +iv++e+++++ +++ +l ky++ + +i i +
MMSYN1_0790 298 TKNGSITSVQAVYVPADDLTDPAPATTFTHLDARIVLDRSIASLGIYPAVDPLASSSRVLDpEIVGQEHYDIALRVQIALQKYQDLQSIIAILGMDEL 395
***********************************************************9549****************************9766666 PP
TIGR01026 400 sdkelDk.aikkleklerflkqdie 423
s++ Dk +++ k+ +fl+q
MMSYN1_0790 396 SEE--DKlIVQRARKIRNFLSQSFF 418
654..4415678899******9865 PP
>> TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 233.5 0.1 3.5e-72 8.8e-70 4 405 .. 13 417 .. 10 424 .. 0.91
Alignments for each domain:
== domain 1 score: 233.5 bits; conditional E-value: 3.5e-72
TIGR02546 4 evlgrvtevsgtllkavlpearvgelcl..ikekekeseleaevvgfeede.alLsplgelsglslgseviplgrplsikvgeelLGrvldglGrpld 98
+ +g+v +v g ++ ++ e ++ +++ i +++ ++l ev de + ++g ++gl++g vi++++p g e+LGr+ + lG+p+d
MMSYN1_0790 13 QSIGKVIQVLGPVVDVKFSENNIPKIYDalIV-DNNGKKLVLEVEQNIGDEiVRTIAMGPTEGLKRGLDVINTNSPITAPTGIEVLGRMFNVLGDPID 109
6789******************9999852133.577788888887655555055779***************************************** PP
TIGR02546 99 gkkelkakeikkrpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstLlsmiarg...akadvivlaLiGeRGRevrefiek 193
+k +l+ k + p+++++P++ + + +++l +G+++iD ++ ++G ++G+f++aGvGk+ L+++++++ a+ v v+a +GeR Re ++ +
MMSYN1_0790 110 EKPDLDVK---REPIHKDAPKYEELVTTTEILETGIKVIDLMIPFTKGGKVGLFGGAGVGKTILIQELINNiakAHNGVSVFAGVGERTREGNDLYHE 204
**888877...469*******************************************************99733455799***********9999999 PP
TIGR02546 194 elgeekrkrsvlvvstsdrsslerlkaayvataiaeyfRdqgk.kvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGasekGs 290
++ +++ lv+ +++ r++ a+++ +iaeyfRdq + +vll++D + Rf++a e++ G p++ gy p++ +++ l eR ++++Gs
MMSYN1_0790 205 FIEAGVLNKTCLVFGQMNEPPGARMRVALTGLTIAEYFRDQKNmDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKNGS 302
999999**********************************97538***************************************************** PP
TIGR02546 291 italYtvLvegddmndpiadevrsilDGhivLsrklaernhyPaiDvlaslsRvlk.kvvskehkkaaaklrellakykevellirlGeYkkGsdkea 387
it++ +v v dd +dp + + lD ivL r++a+ + yPa+D las sRvl+ ++v +eh+ +a +++ l+ky++++ +i + + s e
MMSYN1_0790 303 ITSVQAVYVPADDLTDPAPATTFTHLDARIVLDRSIASLGIYPAVDPLASSSRVLDpEIVGQEHYDIALRVQIALQKYQDLQSIIAILGMDELS--EE 398
******************************************************9648***************************985544433..34 PP
TIGR02546 388 Dk.aikkldeikkflrqsl 405
Dk +++ +i++fl+qs
MMSYN1_0790 399 DKlIVQRARKIRNFLSQSF 417
441678999********85 PP
>> TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 229.3 0.1 6.9e-71 1.7e-68 1 398 [. 16 417 .. 16 425 .. 0.89
Alignments for each domain:
== domain 1 score: 229.3 bits; conditional E-value: 6.9e-71
TIGR03496 1 Gkltkvaglvleavglkasvgelve..ieeeegesveaevvg.feeeklllmpleeveglalgakvvlleeekklpvgeellGrvidalgepldgkga 95
Gk+++v g v++++ + ++ ++ i +++g+++ ev + + +e + +++ +egl+ g v+++++ + p+g e+lGr+++ lg+p+d+k+
MMSYN1_0790 16 GKVIQVLGPVVDVKFSENNIPKIYDalIVDNNGKKLVLEVEQnIGDEIVRTIAMGPTEGLKRGLDVINTNSPITAPTGIEVLGRMFNVLGDPIDEKPD 113
67777777787777777776665441145677888888886426777788999********************************************* PP
TIGR03496 96 leaeeevsleaepinplkrerieevldvGvrainalltvgkGqrlglfagsGvGKsvLlgmlara...teadvvvvaLiGERgREvkefieknLgeeg 190
l+ ++e ++++++++ + + +e l++G+++i+ +++ +kG ++glf g+GvGK++L+ l+ + ++ v v a +GER+RE +++ ++ +++ +
MMSYN1_0790 114 LDVKRE-PIHKDAPKYEELVTTTEILETGIKVIDLMIPFTKGGKVGLFGGAGVGKTILIQELINNiakAHNGVSVFAGVGERTREGNDLYHEFIEAGV 210
998765.7888888888888999***********************************998776521134469999********************** PP
TIGR03496 191 lkrsvvvaatadespllrlraaalataiaeyfrdq.gkdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGngkegkGsitaf 287
l+++++v +e+p r+r a + +iaeyfrdq + dvLl++D + Rf +A e++ +G p + gY p+ +++ +L Er + +++Gsit++
MMSYN1_0790 211 LNKTCLVFGQMNEPPGARMRVALTGLTIAEYFRDQkNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITS--TKNGSITSV 306
**********************************84679*********************************************998..59******* PP
TIGR03496 288 ytvLvegddqqdpiadaaraiLDGHivLsRelaeaghyPaidieaSiSRvm.kkvvseehlkaarklkqllsryeenrdlisigaYkkGsdpelDeai 384
+v v dd +dp ++ + LD ivL+R++a+ g+yPa+d +aS SRv+ +++v +eh++ a +++ l +y++ + +i+i + + s+++ +
MMSYN1_0790 307 QAVYVPADDLTDPAPATTFTHLDARIVLDRSIASLGIYPAVDPLASSSRVLdPEIVGQEHYDIALRVQIALQKYQDLQSIIAILGMDELSEED-KLIV 403
*************************************************98469****************************98887766543.3467 PP
TIGR03496 385 klvpklekflqqev 398
++ k+++fl+q++
MMSYN1_0790 404 QRARKIRNFLSQSF 417
88999******985 PP
>> TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 226.4 0.4 5.9e-70 1.5e-67 1 395 [. 16 416 .. 16 425 .. 0.92
Alignments for each domain:
== domain 1 score: 226.4 bits; conditional E-value: 5.9e-70
TIGR03497 1 GkvkkvvglvieakgpkakiGelcs..ikkkeekkvlaevv.gfkeekvlLmPleevegiapgslveatgkklavkvgkellGkvldglGepldekel 95
Gkv++v g v+ k + +i ++ i +++kk++ ev + +e v + ++ +eg+ g v++t+ +++ ++g e+lG++++ lG+p+dek
MMSYN1_0790 16 GKVIQVLGPVVDVKFSENNIPKIYDalIVDNNGKKLVLEVEqNIGDEIVRTIAMGPTEGLKRGLDVINTNSPITAPTGIEVLGRMFNVLGDPIDEKPD 113
89*********999999888877542255699999****9625778888899*******************************************999 PP
TIGR03497 96 vkkkeklpleaeppnplkrkrikdvlevgvkaidglltvGkGqrvGifagsGvGkstllg.miarnaka..dinviaLvGerGrevrefiekdLgeeG 190
++ ++ p+++++p+ + + ++ le+g+k+id ++ kG +vG+f g+GvGk+ l+ +i aka + v a vGer re +++ ++ +
MMSYN1_0790 114 LDV-KREPIHKDAPKYEELVTTTEILETGIKVIDLMIPFTKGGKVGLFGGAGVGKTILIQeLINNIAKAhnGVSVFAGVGERTREGNDLYHEFIEAGV 210
998.7789999999999999************************************998624555455522799**************9998888888 PP
TIGR03497 191 lkksvvvvatsdqpallrlkaalvataiaeyfrdqGk.kvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGksekGsitglyt 287
l+k+ +v ++p r++ al++ +iaeyfrdq + +vll +D + rf +a ev+ g P++ Gy p++ + + l er ++++Gsit++ +
MMSYN1_0790 211 LNKTCLVFGQMNEPPGARMRVALTGLTIAEYFRDQKNmDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKNGSITSVQA 308
9*********************************96539*********************************************************** PP
TIGR03497 288 vLvdgDdlnePiaDavrgilDGhivLsreLaeknhyPaidvlksvsrvme.eivseehkelaeklrellavykeaedlikigaykkgsnkkideaiek 384
v v +Ddl +P + + + lD ivL+r++a+ + yPa+d l+s srv++ eiv +eh + a +++ l+ y++ + +i i + + s++ + ++
MMSYN1_0790 309 VYVPADDLTDPAPATTFTHLDARIVLDRSIASLGIYPAVDPLASSSRVLDpEIVGQEHYDIALRVQIALQKYQDLQSIIAILGMDELSEED-KLIVQR 405
************************************************9659*****************************9999988655.466889 PP
TIGR03497 385 kekinkfLkqk 395
ki++fL q+
MMSYN1_0790 406 ARKIRNFLSQS 416
999*****997 PP
>> TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 222.7 0.2 6.4e-69 1.6e-66 2 400 .. 17 416 .. 16 424 .. 0.88
Alignments for each domain:
== domain 1 score: 222.7 bits; conditional E-value: 6.4e-69
TIGR03498 2 rvsevkgllvevaGlsaav.rlGdlveieaeegkkvlaevv.gleedevllmpfeslegvelgaavvveeealevrpeeswlGRvidalgepiDgkga 97
+v +v g +v+v+ ++++ ++ d + ++gkk++ ev ++ ++ v +++ ++eg + g v+ ++++ + + lGR+ + lg piD+k+
MMSYN1_0790 17 KVIQVLGPVVDVKFSENNIpKIYDALI-VDNNGKKLVLEVEqNIGDEIVRTIAMGPTEGLKRGLDVINTNSPITAPTGIEVLGRMFNVLGDPIDEKPD 113
566666666666655555423444444.44555788889862578888999****************9999**************************9 PP
TIGR03498 98 laegeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstllsmlara...aaaDvvvialvGeRGRevrefleddlgee 192
l +++p++ ++p+ + +e l+tG++vidl+++ ++G ++G+f G+GvGk+ l+ l+++ a+ v+v a vGeR Re +++ ++ + +
MMSYN1_0790 114 LDV--KREPIHKDAPKYEELVTTTEILETGIKVIDLMIPFTKGGKVGLFGGAGVGKTILIQELINNiakAHNGVSVFAGVGERTREGNDLYHEFIEAG 209
976..56688899999999999*************************************99887762214457899***************9999999 PP
TIGR03498 193 glkrsvvvvatsDesplmRrkaayvalaiaeyfRdqgk.dvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGpGaegkGsitg 289
l+++ +v +e+p +R++ a + l+iaeyfRdq + dvll++D + Rf++a e++ g p a GY p+ +e+ L eR ++++Gsit+
MMSYN1_0790 210 VLNKTCLVFGQMNEPPGARMRVALTGLTIAEYFRDQKNmDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERIT--STKNGSITS 305
9**********************************96439*********************************************99..689****** PP
TIGR03498 290 lftvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRla.kkvlspeekklvkrlrallaryeetedlirlGayrkGsdaevDea 386
+ +v v +Dd ++P ++ + lD ivldR+ia g yPa+++l+s sR+ ++++ +e+ ++ r++ +l++y++ + +i + + + s+++
MMSYN1_0790 306 VQAVYVPADDLTDPAPATTFTHLDARIVLDRSIASLGIYPAVDPLASSSRVLdPEIVGQEHYDIALRVQIALQKYQDLQSIIAILGMDELSEED-KLI 402
**************************************************87368999************************987776655443.456 PP
TIGR03498 387 vklvpkieeflkqe 400
v+ ki +fl+q+
MMSYN1_0790 403 VQRARKIRNFLSQS 416
78888999999997 PP
>> TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 151.4 1.4 2.6e-47 6.4e-45 5 413 .. 18 416 .. 14 422 .. 0.86
Alignments for each domain:
== domain 1 score: 151.4 bits; conditional E-value: 2.6e-47
TIGR01041 5 iteikGplvlvekveevaydeiveie..lpdGekrrGqvldssegl..vvvq.vfeg.ttgldkeatkvrflGetlklkvsedllGrilngsGepidg 96
+ ++ Gp+v v+ e+ +i + ++G+k vl++++++ +v+ + g t+gl++ v+ + + + ++lGr++n +G+pid+
MMSYN1_0790 18 VIQVLGPVVDVKFSENNI-PKIYDALivDNNGKK---LVLEVEQNIgdEIVRtIAMGpTEGLKRGLD-VINTNSPITAPTGIEVLGRMFNVLGDPIDE 110
567888888877665432.233332200333433...455555444223444154452777776665.999*************************** PP
TIGR01041 97 GpeivpderrdinGaalnpaareypeefiqtGisaidGlntlvrGqklpifsgsGlphnelalqiarqakvrgeesefavvfaalGitaeeanffkkd 194
p++ +r i+ +a + e ++tGi id + + +G k+ f g+G+ + l ++ ++ + + ++ vfa +G ++ e n + ++
MMSYN1_0790 111 KPDLDV-KREPIHKDAPKYEELVTTTEILETGIKVIDLMIPFTKGGKVGLFGGAGVGKTILIQELINNIA---KAHNGVSVFAGVGERTREGNDLYHE 204
***865.678999999999999999*******************************99988776655433...34455679***************** PP
TIGR01041 195 fektGaleravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvkGkk 292
f ++G l++++++ ++p+ r+ + lt+aey+ +k++ vl + ++ +++a e+sa +p Gy l t++ +l er k+
MMSYN1_0790 205 FIEAGVLNKTCLVFGQMNEPPGARMRVALTGLTIAEYFRDQKNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERIT--STKN 300
******************************************************************************************76..5789 PP
TIGR01041 293 GsitqipiltmpdddithpipdltGyiteGqivlsrelhrkGiyppinvlpslsrlmkdGiGeGktredhkdvsdqlyaayaegrdlrdlvaivGeea 390
Gsit + + +p dd+t p p t + +ivl+r++ + Giyp ++ l s sr+++ i ++h d++ ++ a + +dl++++ai+G +
MMSYN1_0790 301 GSITSVQAVYVPADDLTDPAPATTFTHLDARIVLDRSIASLGIYPAVDPLASSSRVLDPEIV----GQEHYDIALRVQIALQKYQDLQSIIAILGMDE 394
*********************************************************98774....4689**************************** PP
TIGR01041 391 lserdrkylkfadefekkfvkqg 413
lse d+ ++ a + ++f++q+
MMSYN1_0790 395 LSEEDKLIVQRARKI-RNFLSQS 416
******999998876.5677775 PP
>> TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.0 0.7 1.2e-05 0.003 3 91 .. 16 109 .. 14 116 .. 0.84
2 ! 128.3 0.0 2.8e-40 6.9e-38 188 505 .. 117 418 .. 110 441 .. 0.90
Alignments for each domain:
== domain 1 score: 14.0 bits; conditional E-value: 1.2e-05
TIGR01043 3 GeivrvsGplvvaeglkg..akmyevvkvge..ekliGeiiriegdkaviqv.yeetsGikpgepvestGaplsvelGpGllesiydGvqrpld 91
G++++v Gp+v + ++ k+y+ + v + +kl+ e+ + gd+ v + t+G+k g v +t +p++ G +l+++++ + p+d
MMSYN1_0790 16 GKVIQVLGPVVDVKFSENniPKIYDALIVDNngKKLVLEVEQNIGDEIVRTIaMGPTEGLKRGLDVINTNSPITAPTGIEVLGRMFNVLGDPID 109
99********977655442269***8888762368*******99999987762578*******************************9999987 PP
== domain 2 score: 128.3 bits; conditional E-value: 2.8e-40
TIGR01043 188 qkwpvrkkrpvkekl.epeeplvtGqrildtlfpiakGGtaaipGpfGsGktvtqqslak.wsdae..ivvyiGcGerGnemtevleefpeledpktG 281
++ p+ k+ p e l + +e l tG++++d + p +kGG + G+ G Gkt+ q+l + ++a+ + v+ G Ger e + +ef e
MMSYN1_0790 117 KREPIHKDAPKYEELvTTTEILETGIKVIDLMIPFTKGGKVGLFGGAGVGKTILIQELINnIAKAHngVSVFAGVGERTREGNDLYHEFIEA------ 208
56799999997666516677888******************************99988642454433399*******************763...... PP
TIGR01043 282 kpllertvliantsnmpvaareasiytGitiaeyfrdm.GydvalvadstsrwaealreisgrleempgeeGypaylasrlaefyeraGrvktlgsee 378
+l++t+l+ n p ar tG+tiaeyfrd+ dv+l d r+++a e+s+ l mp+ Gy l++ + er s+
MMSYN1_0790 209 -GVLNKTCLVFGQMNEPPGARMRVALTGLTIAEYFRDQkNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERIT------ST- 298
.589*********************************8468******************************************999953......33. PP
TIGR01043 379 regsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainwlqsyslyvdsvedwfaenvdeewrelrdealellqkeaelqeivrlv 476
++gs+t v av p d+++p t + ld ++a+ +pa++ l s s d e v +e+ ++ ++ lqk ++lq i+ ++
MMSYN1_0790 299 KNGSITSVQAVYVPADDLTDPAPATTFTHLDARIVLDRSIASLGIYPAVDPLASSSRVLDP------EIVGQEHYDIALRVQIALQKYQDLQSIIAIL 390
68*****************************************************998884......77888888888888889************** PP
TIGR01043 477 Gsdalpekeklvlevarlireaflkqnaf 505
G d+l+e++kl+++ ar ir+ fl q f
MMSYN1_0790 391 GMDELSEEDKLIVQRARKIRN-FLSQSFF 418
*******************96.7877655 PP
>> TIGR00962 atpA: ATP synthase F1, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 131.1 1.0 4.7e-41 1.2e-38 18 424 .. 6 416 .. 2 423 .. 0.89
Alignments for each domain:
== domain 1 score: 131.1 bits; conditional E-value: 4.7e-41
TIGR00962 18 fekeieaeevGtvvsvadGiakveGlenvl..skeliefeggvkgialnlee....dsvGvvilGdyseikeGsevkrtgevlevpvGdallGrvvna 109
+ + +++ +G+v++v ++ v+ en + ++ + ++++ k ++l++e+ + v + +G+++ +k G +v t++ + +p G ++lGr+ n
MMSYN1_0790 6 TTDKKKNQSIGKVIQVLGPVVDVKFSENNIpkIYDALIVDNNGKKLVLEVEQnigdEIVRTIAMGPTEGLKRGLDVINTNSPITAPTGIEVLGRMFNV 103
566788999*************99888765224566667777776666555511116799999*********************************** PP
TIGR00962 110 lGepidGkGdieseefsavekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavaidtiinqkdskkdvkcvyvaiGqkestva 207
lG+pid k d++ + ++++ k aP e + +e l+tGik id +iP +G + + G Gkt + i +in+ + ++ + v+ +G ++
MMSYN1_0790 104 LGDPIDEKPDLDVK-REPIHKDAPKYEELVTTTEILETGIKVIDLMIPFTKGGKVGLFGGAGVGKTIL-IQELINNIAKAHNGVSVFAGVGERTREGN 199
***********986.689***********************************************965.6777777776778889************* PP
TIGR00962 208 qvvekleekgaleytivvaasasdsaslqylaPyagvalaeyfrdk.gkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhsrlleraak 304
++ +++ e+g l+ t +v + +++ + + +g ++aeyfrd+ +d+l+ d++ + ++a ++s ll r P y + l er +
MMSYN1_0790 200 DLYHEFIEAGVLNKTCLVFGQMNEPPGARMRVALTGLTIAEYFRDQkNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITS 297
********************************************862689*******************************99998888889999875 PP
TIGR00962 305 lsdekGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvsrvGgaaqi.kaikkvaGslrlelaqyreleafsqf.a 400
+Gs+t++ + a+d++ P+ + d +i l+ ++ Gi Pa++ s srv + + ++a ++++l +y++l++ + +
MMSYN1_0790 298 T----KNGSITSVQAVYVPADDLTDPAPATTFTHLDARIVLDRSIASLGIYPAVDPLASSSRVLDPEIVgQEHYDIALRVQIALQKYQDLQSIIAIlG 391
4....469*******************************************************9876662456789999999*********9876524 PP
TIGR00962 401 .sdldeatkkqlerGkrlvellkqe 424
+l e k ++r +++ ++l q+
MMSYN1_0790 392 mDELSEEDKLIVQRARKIRNFLSQS 416
25799999************99986 PP
>> TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 127.4 0.4 5.2e-40 1.3e-37 39 424 .. 50 418 .. 14 425 .. 0.82
Alignments for each domain:
== domain 1 score: 127.4 bits; conditional E-value: 5.2e-40
TIGR01040 39 gqvlevsge...kavvqvfeg.tsgidakkttveftgdilrlpvsedmlgrvfngsgkpidkgpkvlaedyldingqpinpkariype.....emiqt 127
vlev+++ v + g t g+ ++ t + p ++lgr+fn g pid+ p+ ld++ +pi a y e e+++t
MMSYN1_0790 50 KLVLEVEQNigdEIVRTIAMGpTEGLKRGLDVI-NTNSPITAPTGIEVLGRMFNVLGDPIDEKPD------LDVKREPIHKDAPKYEElvtttEILET 140
356666654221344444444255655444444.4667788999********************8......57777777666655543333339**** PP
TIGR01040 128 gisaidvmnsiargqkiplfsaaglphneiaaqicrqaglvkksekdvkdekeenfaivfaamgvnletarffkqdfeengslervtlflnlandpti 225
gi id m ++g k+ lf +ag+ + i q l++ ++ + +n vfa +g + + ++f e+g l++++l + n+p
MMSYN1_0790 141 GIKVIDLMIPFTKGGKVGLFGGAGVGKT-----ILIQE-LIN----NIAK--AHNGVSVFAGVGERTREGNDLYHEFIEAGVLNKTCLVFGQMNEPPG 226
************************8654.....33332.333....3333..4566789******9999999999*********************** PP
TIGR01040 226 eriitprlalttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrvegrngsitqipiltmpnddithpipd 323
r+ lt aey+ +k++ vl+ + ++ +++a evsa +p+ g+ + t++ ++ er + +ngsit + + +p dd+t p p
MMSYN1_0790 227 ARMRVALTGLTIAEYFRDQKNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERIT--STKNGSITSVQAVYVPADDLTDPAPA 322
****999*************************************************************86..578*********************** PP
TIGR01040 324 ltgyitegqiyvdrqlhnrqiyppinvlpslsrlmksaigegmtrkdhsdvsnqlyakyaigkdvaamkavvgeealssedllyleflekfekkfiaq 421
t + +i +dr++ iyp ++ l s sr++ i ++h d++ ++ + +d++++ a++g + ls+ed+l ++ k+ ++f++q
MMSYN1_0790 323 TTFTHLDARIVLDRSIASLGIYPAVDPLASSSRVLDPEI----VGQEHYDIALRVQIALQKYQDLQSIIAILGMDELSEEDKLIVQRARKI-RNFLSQ 415
**999*****************************98765....5689******999999999***********************998887.789999 PP
TIGR01040 422 gay 424
+ +
MMSYN1_0790 416 SFF 418
876 PP
>> TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.1 0.7 1.5e-39 3.6e-37 22 423 .. 9 416 .. 2 469 .. 0.88
Alignments for each domain:
== domain 1 score: 126.1 bits; conditional E-value: 1.5e-39
TIGR03324 22 elalkevGtvesvskGiakvs....GlpgvgveellkfpGdll..GiafnvdedevGvvllgeysklqaGdevertgrvldvpvGdellGrvvdplGr 113
+ + + +G+v +v + v+ +p++ ++ +G l + n+ ++ v ++ +g + l+ G +v t++ + p G e+lGr+ + lG
MMSYN1_0790 9 KKKNQSIGKVIQVLGPVVDVKfsenNIPKIYDALIVDNNGKKLvlEVEQNIGDEIVRTIAMGPTEGLKRGLDVINTNSPITAPTGIEVLGRMFNVLGD 106
55566677777777666666422225677766667777777551145668999999****************************************** PP
TIGR03324 114 pldgkkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrqtGktaiaidtilnq..kdknvlcvycaiGqrasavakvv 209
p+d+k +l+ kr+pi ++ap+ + + t+ l+tG+kv+d +ip +G + ++G Gkt i+ ++n+ k +n + v+ +G+r+ +
MMSYN1_0790 107 PIDEKPDLD-VKREPIHKDAPKYEELVTTTEILETGIKVIDLMIPFTKGGKVGLFGGAGVGKTI-LIQELINNiaKAHNGVSVFAGVGERTREGNDLY 202
***998875.689*************************************************95.56666664347889******************* PP
TIGR03324 210 aelrekgaldytivvvtegndppGlqyiapyaatsiaeyfmeq.GrdvlivyddltkharayrelslllrrppGreafpGdifyvhsrllersthlrk 306
e+ e g l+ t v ++ n+ppG + + +iaeyf +q dvl+ d++ + ++a e+s ll r p + + l er t
MMSYN1_0790 203 HEFIEAGVLNKTCLVFGQMNEPPGARMRVALTGLTIAEYFRDQkNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST-- 298
****************************************987267********************************9999999999****9965.. PP
TIGR03324 307 erGGGsltalpiieteaqnisayiptnlisitdGqiylspelfelGvlpavdvGksvsrvGGk.aqlaayravaGdlklayaqfeeleaf.arfga.r 401
Gs+t++ + a +++ p+ + d +i l ++ +lG+ pavd s srv + +a ++++a ++++l++ a +g
MMSYN1_0790 299 --KNGSITSVQAVYVPADDLTDPAPATTFTHLDARIVLDRSIASLGIYPAVDPLASSSRVLDPeIVGQEHYDIALRVQIALQKYQDLQSIiAILGMdE 394
..469******************************************************9765145567889***************98625666437 PP
TIGR03324 402 ldeetrkvierGrrirailkqt 423
l ee + +++r r+ir+ l q+
MMSYN1_0790 395 LSEEDKLIVQRARKIRNFLSQS 416
9******************997 PP
>> TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 4.5 0.4 0.0098 2.4 2 91 .. 15 109 .. 14 115 .. 0.79
2 ! 115.5 0.0 2.4e-36 6e-34 193 508 .. 120 418 .. 114 439 .. 0.89
Alignments for each domain:
== domain 1 score: 4.5 bits; conditional E-value: 0.0098
TIGR01042 2 ygsvkkvsgpvvvae..emagaamyelvrvgh..eelvgeiirlegdkatiqv.yeetagltvgdpvlrtgkplsvelgpgilgnifdgiqrplk 91
+g+v +v gpvv + e + +y+ + v + ++lv e+ + gd+ + t gl+ g v+ t++p++ g +lg +f+ + p++
MMSYN1_0790 15 IGKVIQVLGPVVDVKfsENNIPKIYDALIVDNngKKLVLEVEQNIGDEIVRTIaMGPTEGLKRGLDVINTNSPITAPTGIEVLGRMFNVLGDPID 109
6999*******9764214455678987666542279*****9999998754441678******************************99888875 PP
== domain 2 score: 115.5 bits; conditional E-value: 2.4e-36
TIGR01042 193 pvrsprpvaeklaadtpll.tgqrvldalfpsvqggttaipgafgcgktvisqslsky...snsdvivyvgcgergnemaevlrdfpeltveldgree 286
p+ + p e+l + t +l tg +v+d + p +gg + + g g gkt++ q l + v v+ g ger e ++ ++f e
MMSYN1_0790 120 PIHKDAPKYEELVTTTEILeTGIKVIDLMIPFTKGGKVGLFGGAGVGKTILIQELINNiakAHNGVSVFAGVGERTREGNDLYHEFIE---------A 208
788888999998887766559*****************************999875431113345789**************999965.........5 PP
TIGR01042 287 simkrttlvantsnmpvaareasiytgitlaeyfrdm.gynvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvkclgsper 383
++ +t+lv n p ar tg+t+aeyfrd+ ++v ++ d r+++a e+s l+ mp+ gy l++ + s+ er +
MMSYN1_0790 209 GVLNKTCLVFGQMNEPPGARMRVALTGLTIAEYFRDQkNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERIT-------STK 299
799*********************************83579999*****************************************975.......457 PP
TIGR01042 384 egsvsivgavsppggdfsdpvtsatlgivqvfwgldkklaqrkhfpsvnwlisyskylkaleefyekeypefvelrtkvkeilqeeeeleeivqlvgk 481
+gs++ v av p d++dp ++t++ + ld+ +a +p+v+ l s s+ +l++ e +e ++ +v+ lq+ ++l+ i+ ++g
MMSYN1_0790 300 NGSITSVQAVYVPADDLTDPAPATTFTHLDARIVLDRSIASLGIYPAVDPLASSSR---VLDP--EIVGQEHYDIALRVQIALQKYQDLQSIIAILGM 392
9**************************************************99986...6665..55556667777788889**************** PP
TIGR01042 482 dalaesdkitlevaklikedflqqngy 508
d l+e+dk++++ a+ i++ fl q +
MMSYN1_0790 393 DELSEEDKLIVQRARKIRN-FLSQSFF 418
*****************96.8888655 PP
>> TIGR00767 rho: transcription termination factor Rho
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.9 0.0 1.1e-13 2.8e-11 145 394 .. 131 387 .. 105 405 .. 0.80
Alignments for each domain:
== domain 1 score: 40.9 bits; conditional E-value: 1.1e-13
TIGR00767 145 lkleteteelttrvldliaPiGkGqralivaPPkaGktvllqeianaitrnnpevelivlliderPeevtdmqrs.vkgevvast......fdepasr 235
l te e +v+dl++P kG + + Gkt+l+qe+ n i++ + v ++ + er e d+ + +++ v+ t ++ep+
MMSYN1_0790 131 LVTTTEILETGIKVIDLMIPFTKGGKVGLFGGAGVGKTILIQELINNIAKAHNGVSVF-AGVGERTREGNDLYHEfIEAGVLNKTclvfgqMNEPPGA 227
4444455555679*************9999**********************999865.689*********97652577776655333222799**** PP
TIGR00767 236 hvqvaelviekakrlvekkk.dvvilldsitrlarayntvsPasGkilsGGvdatalhkPkrflGaarnieeGGsltiiatalvetGskmdevifeef 332
++va + a+ ++k+ dv++++d i r+++a +vs G++ s + +l l + Gs+t + + v + +d f
MMSYN1_0790 228 RMRVALTGLTIAEYFRDQKNmDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKNGSITSVQAVYVPADDLTDPAPATTF 325
*****999999999888775499999********************998766666777776667666677788*******************999999 PP
TIGR00767 333 kgtGnaelkldrklaerrvfPaidikksGtrk.eelllskeelekvwvlrkvlsgldsveaie 394
+a ++ldr++a ++Pa+d s +r + ++ +e++++ ++ +l++ ++ + i
MMSYN1_0790 326 THL-DARIVLDRSIASLGIYPAVDPLASSSRVlDPEIVGQEHYDIALRVQIALQKYQDLQSII 387
765.799*****************999988852556777778887777777777777766654 PP
>> TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.8 0.0 0.00012 0.03 127 177 .. 159 211 .. 124 217 .. 0.85
2 ? 0.1 0.0 0.44 1.1e+02 66 108 .. 379 422 .. 366 446 .. 0.72
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 0.00012
TIGR00157 127 faGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhl..qgGli 177
+ G +GVGK Li l ++ ++ + vs + G T l+h ++G++
MMSYN1_0790 159 LFGGAGVGKTILIQELINNIAKAHNGVSVFAGVGERTREGNDLYHEfiEAGVL 211
56899**************************************9965677766 PP
== domain 2 score: 0.1 bits; conditional E-value: 0.44
TIGR00157 66 eakniepiivlnkkdlleeedae.keqleelknlgYkvllvsvk 108
+ ++++ ii + +d+l+eed +++ + +n+ + ++v +k
MMSYN1_0790 379 KYQDLQSIIAILGMDELSEEDKLiVQRARKIRNFLSQSFFVGEK 422
45788888888888888888766567777777777777776654 PP
>> TIGR03928 T7_EssCb_Firm: type VII secretion protein EssC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.3 0.0 8.8e-05 0.022 803 839 .. 147 183 .. 142 189 .. 0.90
Alignments for each domain:
== domain 1 score: 10.3 bits; conditional E-value: 8.8e-05
TIGR03928 803 ltldlskdghlaifgspgyGkstflqtlildlarkns 839
l++ ++k g++ +fg +g+Gk++++q li ++a+ ++
MMSYN1_0790 147 LMIPFTKGGKVGLFGGAGVGKTILIQELINNIAKAHN 183
6678899**************************9997 PP
>> TIGR00073 hypB: hydrogenase accessory protein HypB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.0 0.1 0.24 60 100 144 .. 27 74 .. 10 79 .. 0.79
2 ? 8.1 0.0 0.0016 0.4 34 62 .. 158 187 .. 151 207 .. 0.82
Alignments for each domain:
== domain 1 score: 1.0 bits; conditional E-value: 0.24
TIGR00073 100 adalkdlelddk.dlllienvGn.LvCPadfdlGek.lrvvllsvteG 144
+ + +++ +++ d l+++n G Lv ++ ++G++ +r + + teG
MMSYN1_0790 27 DVKFSENNIPKIyDALIVDNNGKkLVLEVEQNIGDEiVRTIAMGPTEG 74
5566677788888*******9954999*******87357777777777 PP
== domain 2 score: 8.1 bits; conditional E-value: 0.0016
TIGR00073 34 nllssiGsGktlllekliealkkevk.iav 62
l++ G Gkt+l+++li+++ k ++ ++v
MMSYN1_0790 158 GLFGGAGVGKTILIQELINNIAKAHNgVSV 187
678999**************9886642445 PP
>> TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.7 0.9 0.00084 0.21 438 467 .. 155 185 .. 147 190 .. 0.84
2 ? -1.8 0.1 0.59 1.5e+02 24 61 .. 377 414 .. 371 416 .. 0.87
Alignments for each domain:
== domain 1 score: 7.7 bits; conditional E-value: 0.00084
TIGR00929 438 GhTlIfGptgsGKTvllnfllaqlqkykp.l 467
G + +fG g GKT+l++ l++++ k+ + +
MMSYN1_0790 155 GKVGLFGGAGVGKTILIQELINNIAKAHNgV 185
78889*********************98834 PP
== domain 2 score: -1.8 bits; conditional E-value: 0.59
TIGR00929 24 ltkngsLlaiikleGisfesasdeeleqlsaelnaalk 61
l k ++L +ii + G++ s++d+ + q+ +++ + l+
MMSYN1_0790 377 LQKYQDLQSIIAILGMDELSEEDKLIVQRARKIRNFLS 414
567789999*******************9999988775 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (475 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 241 (0.0536988); expected 89.8 (0.02)
Passed bias filter: 210 (0.0467914); expected 89.8 (0.02)
Passed Vit filter: 53 (0.0118093); expected 4.5 (0.001)
Passed Fwd filter: 18 (0.0040107); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 18 [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.26
# Mc/sec: 2623.54
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0790 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0791 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0791.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0791/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0791 [L=280]
Description: ATPsyn_F1gamma: ATP synthase F1, gamma subunit 5=Equivalog Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.1e-82 273.8 11.2 5.7e-82 273.7 11.2 1.0 1 TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit
7.6e-22 75.9 5.5 1e-21 75.5 5.5 1.2 1 TIGR03323 alt_F1F0_F1_gam: alternate F1F0 ATPase, F1 subunit
Domain annotation for each model (and alignments):
>> TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 273.7 11.2 2.5e-85 5.7e-82 1 285 [. 1 278 [. 1 279 [. 0.96
Alignments for each domain:
== domain 1 score: 273.7 bits; conditional E-value: 2.5e-85
TIGR01146 1 maslkeirkrikSvkntkkITkAmklVaasklrraqerveaarpyaeklaevlknlaaklkevdhplllkkrevkkvlllvvtsdrGLcGgynsnvlk 98
m++lk +++ i Svkn++kIT+Am+lVa++klr+ ++v +++y +++ +++++ +++ + l + e+kk+l++v+ s+ GLcGgynsnv k
MMSYN1_0791 1 MPNLKGLKTEILSVKNISKITNAMQLVASAKLRKISKKVIDTHNYVSEVYSLFNDIISQAD-KSVFLKDSNFETKKTLWIVINSNLGLCGGYNSNVNK 97
89******************************************************99877.44445678889************************* PP
TIGR01146 99 kveeklkelkeegkevklvviGkkgkeffkrreiniaasvtglseqptfeeaqeiadklleafesgevdkveivynkfvsllsqeptvkkllplseke 196
v ++lk+ ++ ++++iG+k+ +ffk+++i+i ++vt+++ + t e+a+ i+++ll+++++ e+d+++ivy+kf++ +++ep + +++p++++e
MMSYN1_0791 98 LVLQNLKT---ND---EIFAIGSKAVSFFKSKKIKIRDQVTNIDINFTNEKAKIISNDLLAMYTNREFDEIKIVYTKFINNVTFEPAIIRIFPIVKSE 189
**999988...44...59*******************************************************************************9 PP
TIGR01146 197 .eekkleeklefepdeeeilesLlprylesqiyrallesaasElaaRmtAMdnAtdNAkdlikkltlsyNraRQaaITqElieivaGasa 285
+ + ++k++fepd+++il++ + y++ iy+ ++es sE+a+R+tAM+nAt+N ++l ++l+l+yNr+RQ aITqE++eiv+Ga+a
MMSYN1_0791 190 lH-FTHKQKIIFEPDADQILNNTISIYINAIIYGTVIESQVSEQASRRTAMENATNNGQNLEHELSLKYNRQRQGAITQEISEIVSGANA 278
54.5799*********************************************************************************98 PP
>> TIGR03323 alt_F1F0_F1_gam: alternate F1F0 ATPase, F1 subunit gamma
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.5 5.5 4.5e-25 1e-21 1 284 [. 7 278 .. 7 279 .. 0.86
Alignments for each domain:
== domain 1 score: 75.5 bits; conditional E-value: 4.5e-25
TIGR03323 1 lrrkiesaadLksvvrtmkalaavsirqYedavraLddYyetveLGLavvlreeelaaasasgkskkesgktgaivlGsDqGlvGqfnevllefvvee 98
l++ i s +++ + +m+ +a++++r+ + v ++Y + v + ++++ +++ ++ s+ e++kt iv+ s+ Gl+G +n + + v+++
MMSYN1_0791 7 LKTEILSVKNISKITNAMQLVASAKLRKISKKVIDTHNYVSEVYSLFNDIISQADKSVFLKD--SNFETKKTLWIVINSNLGLCGGYNSNVNKLVLQN 102
56778899999999****************************99888888888888877777..56677799*******************9999765 PP
TIGR03323 99 laelkgekevwavGervasrledsglkieelf.alP.nsvkaitalvsellievekvreqeelaelllffnrkesgasYeptsqrlLPlDeaWkkqla 194
lk++ e++a+G + s + +++ki+++ ++ n ++ ++++s+ l ++ + re +e +++ + + +++++ep r+ P+ ++ +
MMSYN1_0791 103 ---LKTNDEIFAIGSKAVSFFKSKKIKIRDQVtNIDiNFTNEKAKIISNDLLAMYTNREFDE---IKIVYTKFINNVTFEPAIIRIFPIVKSELHFT- 193
...566778*********99999999998765145425567788899988888888887776...889999999***************87543332. PP
TIGR03323 195 kkkWptkclPellgekeetlsalireylfvsLfraaaesLasenasrlaamqraeknidelldeLnrrfhrlrqsaideeLfdvvsGfea 284
k + + ++ l++ i+ y+ ++ ++ es se asr +am a n ++l +eL+ +++r+rq+ai+ e++++vsG +a
MMSYN1_0791 194 -----HKQKIIFEPDADQILNNTISIYINAIIYGTVIESQVSEQASRRTAMENATNNGQNLEHELSLKYNRQRQGAITQEISEIVSGANA 278
.....2333347789999*********************************************************************876 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (280 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 251 (0.0559269); expected 89.8 (0.02)
Passed bias filter: 53 (0.0118093); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 2116.27
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0791 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0792 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0792.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0792/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0792 [L=525]
Description: atpA: ATP synthase F1, alpha subunit 5=Equivalog Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-230 763.1 6.7 3.7e-230 762.8 6.7 1.0 1 TIGR00962 atpA: ATP synthase F1, alpha subunit
2.2e-185 615.0 2.8 2.5e-185 614.8 2.8 1.0 1 TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit
5.9e-57 191.3 1.1 8.2e-57 190.8 1.1 1.1 1 TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
2.9e-56 188.9 0.5 3.8e-56 188.5 0.5 1.1 1 TIGR02546 III_secr_ATP: type III secretion apparatus H+-tran
3.5e-53 178.9 3.0 4.6e-53 178.5 3.0 1.1 1 TIGR01026 fliI_yscN: ATPase, FliI/YscN family
8.9e-50 167.8 2.0 1.4e-49 167.1 2.0 1.2 1 TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
1.3e-49 166.9 0.4 1.7e-49 166.5 0.4 1.1 1 TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
5.6e-41 138.4 3.7 4.6e-40 135.4 3.7 1.9 1 TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
2.8e-33 113.1 0.9 2.1e-32 110.2 0.9 2.0 1 TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
1.6e-32 110.8 1.9 2.8e-32 110.0 1.3 1.5 2 TIGR01039 atpD: ATP synthase F1, beta subunit
6.4e-24 82.4 0.2 8.2e-24 82.0 0.2 1.1 1 TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit
2.4e-20 70.4 8.2 2.3e-18 63.9 0.1 3.0 3 TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
2.5e-14 50.7 2.7 8.2e-12 42.4 0.1 2.4 2 TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
2.4e-08 31.2 0.1 4.6e-08 30.3 0.1 1.4 1 TIGR00767 rho: transcription termination factor Rho
0.0046 14.6 0.0 0.0085 13.8 0.0 1.5 1 TIGR03881 KaiC_arch_4: KaiC domain protein, PAE1156 family
0.0073 13.8 0.1 0.014 12.9 0.1 1.5 1 TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
Domain annotation for each model (and alignments):
>> TIGR00962 atpA: ATP synthase F1, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 762.8 6.7 1.3e-232 3.7e-230 3 495 .. 4 496 .. 2 504 .. 0.98
Alignments for each domain:
== domain 1 score: 762.8 bits; conditional E-value: 1.3e-232
TIGR00962 3 kleeiselikkeikkfekeieaeevGtvvsvadGiakveGlenvlskeliefeggvkgialnleedsvGvvilGdyseikeGsevkrtgevlevpvGd 100
+ +eise+i+k+i++++kei ++e Gtvvsv+dGia ++Gl+n++++e+++f+++v+g++lnlee++vG+vilGd++ i+eG+ vkrt++v+e+pvGd
MMSYN1_0792 4 NIKEISEMIEKQIRNYNKEIVQTEQGTVVSVGDGIALIYGLDNAIMGEFLKFPNNVYGMVLNLEESAVGAVILGDETLIREGDIVKRTNKVVETPVGD 101
789*********************************************************************************************** PP
TIGR00962 101 allGrvvnalGepidGkGdieseefsavekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavaidtiinqkdskkdvkcvyva 198
allGrv+nal +pid G+i+ ++++++e+ a +v+ rksv++Pl+tGi aid+ iPiG+GqreliiGdrqtGkta+aid+iinq++ k+vkc+yva
MMSYN1_0792 102 ALLGRVINALSKPIDNLGPINFTKTKPIERVATSVMARKSVSQPLETGILAIDSAIPIGKGQRELIIGDRQTGKTAIAIDAIINQRN--KNVKCIYVA 197
***************************************************************************************..78******* PP
TIGR00962 199 iGqkestvaqvvekleekgaleytivvaasasdsaslqylaPyagvalaeyfrdkgkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhs 296
iGqk+st+ qvvekl++ ga+eyt+vv+a as++a lqyl+Py+g+++ae+++++g d+li+yddlsk+av+yrq+slllrrPPGreayPGdvfylhs
MMSYN1_0792 198 IGQKDSTIVQVVEKLKKYGAMEYTVVVNAGASQPAPLQYLSPYVGITIAEEWMENGSDVLIVYDDLSKHAVSYRQMSLLLRRPPGREAYPGDVFYLHS 295
************************************************************************************************** PP
TIGR00962 297 rlleraaklsdekGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvsrvGgaaqikaikkvaGslrlelaqyrele 394
rlleraa+++++ G+Gs+talPiietqagd+sayiPtnvisitdGqifl+s+lfn+GirPa+++G svsrvG++aqik ik+v+G+l+lelaqy ele
MMSYN1_0792 296 RLLERAARVNENYGGGSITALPIIETQAGDISAYIPTNVISITDGQIFLSSELFNQGIRPAVDIGPSVSRVGSSAQIKSIKQVSGTLKLELAQYYELE 393
************************************************************************************************** PP
TIGR00962 395 afsqfasdldeatkkqlerGkrlvellkqeqskPlsveeqvvilyavtkgylddipvekvakfeeelleyldkekk..elleeikkkkklteeleekl 490
+f++f+sdlde+tk++l++G++++++l q+q++Pl +++q+++l ++++ ++ +pve++ +f++e+l++++++k+ el ++++++k+++++l++++
MMSYN1_0792 394 SFAKFGSDLDESTKATLDQGAKIIQMLIQKQHNPLEQVDQAILLLTIKSHLIKWLPVESIYNFKHEILSHFKNDKNafELRKKLDEQKTFDDQLQQQI 491
**********************************************************************988776337889************9987 PP
TIGR00962 491 kevle 495
+ +
MMSYN1_0792 492 LKEAQ 496
55444 PP
>> TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 614.8 2.8 9.1e-188 2.5e-185 5 496 .. 5 498 .. 1 499 [. 0.98
Alignments for each domain:
== domain 1 score: 614.8 bits; conditional E-value: 9.1e-188
TIGR03324 5 ldkaleeleearesaapelalkevGtvesvskGiakvsGlpgvgveellkfpGdllGiafnvdedevGvvllgeysklqaGdevertgrvldvpvGde 102
++++ e +e+ ++ + e++ +e Gtv sv Gia + Gl ++ + e+lkfp +++G+ +n++e+ vG+v+lg+ + ++ Gd v+rt++v+++pvGd
MMSYN1_0792 5 IKEISEMIEKQIRNYNKEIVQTEQGTVVSVGDGIALIYGLDNAIMGEFLKFPNNVYGMVLNLEESAVGAVILGDETLIREGDIVKRTNKVVETPVGDA 102
6778899999**************************************************************************************** PP
TIGR03324 103 llGrvvdplGrpldgkkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrqtGktaiaidtilnqkdknvlcvycaiGq 200
llGrv++ l +p+d+ ++++++k pier a+++m r++v++pl+tG+ +d+ ipiG+Gqreli+GdrqtGktaiaid+i+nq++knv c+y aiGq
MMSYN1_0792 103 LLGRVINALSKPIDNLGPINFTKTKPIERVATSVMARKSVSQPLETGILAIDSAIPIGKGQRELIIGDRQTGKTAIAIDAIINQRNKNVKCIYVAIGQ 200
************************************************************************************************** PP
TIGR03324 201 rasavakvvaelrekgaldytivvvtegndppGlqyiapyaatsiaeyfmeqGrdvlivyddltkharayrelslllrrppGreafpGdifyvhsrll 298
+ s++ +vv++l++ ga++yt+vv + +p+ lqy++py +iae +me+G dvlivyddl+kha +yr++slllrrppGrea+pGd+fy+hsrll
MMSYN1_0792 201 KDSTIVQVVEKLKKYGAMEYTVVVNAGASQPAPLQYLSPYVGITIAEEWMENGSDVLIVYDDLSKHAVSYRQMSLLLRRPPGREAYPGDVFYLHSRLL 298
************************************************************************************************** PP
TIGR03324 299 ersthlrkerGGGsltalpiieteaqnisayiptnlisitdGqiylspelfelGvlpavdvGksvsrvGGkaqlaayravaGdlklayaqfeeleafa 396
er++ ++++ GGGs+talpiiet+a +isayiptn+isitdGqi+ls elf++G+ pavd+G svsrvG aq+ + ++v+G lkl aq+ ele+fa
MMSYN1_0792 299 ERAARVNENYGGGSITALPIIETQAGDISAYIPTNVISITDGQIFLSSELFNQGIRPAVDIGPSVSRVGSSAQIKSIKQVSGTLKLELAQYYELESFA 396
************************************************************************************************** PP
TIGR03324 397 rfgarldeetrkvierGrrirailkqtessplsvaeqivillalseelfdaveldklseaekaisaavte..lpadlveklesakklsdedreaildi 492
+fg+ lde t++++++G +i ++l q++++pl +q ++ll+++++l+ ++++ + + ++ i + ++ + +l++kl+++k+++d+ +++il+
MMSYN1_0792 397 KFGSDLDESTKATLDQGAKIIQMLIQKQHNPLEQVDQAILLLTIKSHLIKWLPVESIYNFKHEILSHFKNdkNAFELRKKLDEQKTFDDQLQQQILKE 494
*************************************************************999988765125679*******************999 PP
TIGR03324 493 akka 496
a+k+
MMSYN1_0792 495 AQKV 498
8876 PP
>> TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 190.8 1.1 2.9e-59 8.2e-57 25 402 .. 54 428 .. 23 439 .. 0.89
Alignments for each domain:
== domain 1 score: 190.8 bits; conditional E-value: 2.9e-59
TIGR03496 25 eieeeegesveaevvgfeeeklllmpleeveglalgakvvlleeekklpvgeellGrvidalgepldgkgaleaeeevsleaepinplkrerieevld 122
++ ++v ++v+++ee+ + + l + + ++ g+ v +++ + pvg++llGrvi+al++p+d+ g+++ +++ ++e+ +++ ++r+ ++++l+
MMSYN1_0792 54 KF----PNNVYGMVLNLEESAVGAVILGDETLIREGDIVKRTNKVVETPVGDALLGRVINALSKPIDNLGPINFTKTKPIERVATSVMARKSVSQPLE 147
44....46789*************************************************************************************** PP
TIGR03496 123 vGvrainalltvgkGqrlglfagsGvGKsvL.lgmlarateadvvvvaL.iGERgREvkefieknLgeeglkrsvvvaatadespllrlraaalatai 218
+G+ ai++ +++gkGqr ++ GK+ + + ++ + + +v+ + + iG + + + +ek + +++ +vvv a a +++ l+ + ++ ++i
MMSYN1_0792 148 TGILAIDSAIPIGKGQRELIIGDRQTGKTAIaIDAIINQRNKNVKCIYVaIGQKDSTIVQVVEKLKKYGAMEYTVVVNAGASQPAPLQYLSPYVGITI 245
****************************86538899888888887664339************9999999**************************** PP
TIGR03496 219 aeyfrdqgkdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGngkeg..kGsitafytvLvegddqqdpiadaaraiLDGHiv 314
ae + ++g+dvL++ D l++ A R+++l + pp +Yp vf ++L+Era + +e+ Gsita+ + ++ d + i ++ +i DG i
MMSYN1_0792 246 AEEWMENGSDVLIVYDDLSKHAVSYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAARVNENygGGSITALPIIETQAGDISAYIPTNVISITDGQIF 343
********************************************************9876554499******************************** PP
TIGR03496 315 LsRelaeaghyPaidieaSiSRvmkkvvseehlkaarklkqllsryeenrdlisigaYkkGsdpelDeaiklvpklekflqqeveekv 402
Ls el ++g+ Pa+di S+SRv +++ ++ +++ +lk l++y e + + + g+ d+++ ++++ k+ ++l q+ ++ +
MMSYN1_0792 344 LSSELFNQGIRPAVDIGPSVSRVGSSAQIKSIKQVSGTLKLELAQYYELESFAKFGS---DLDESTKATLDQGAKIIQMLIQKQHNPL 428
**********************************************99998888775...5555555566666666677777766654 PP
>> TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 188.5 0.5 1.4e-58 3.8e-56 21 409 .. 44 428 .. 24 440 .. 0.91
Alignments for each domain:
== domain 1 score: 188.5 bits; conditional E-value: 1.4e-58
TIGR02546 21 lpearvgelclikekekeseleaevvgfeedealLsplgelsglslgseviplgrplsikvgeelLGrvldglGrpldgkkelkakeikkrpldaepP 118
l +a +ge+ + +++ v+ +ee+ + + lg+ + + +g v +++ + vg++lLGrv+++l +p+d+ ++++ +++k p+ + +
MMSYN1_0792 44 LDNAIMGEFLKFP-----NNVYGMVLNLEESAVGAVILGDETLIREGDIVKRTNKVVETPVGDALLGRVINALSKPIDNLGPINFTKTK--PIERVAT 134
5567777777666.....4677789999999999999************************************************9755..******* PP
TIGR02546 119 dplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstL.lsmiargakadv.ivlaLiGeRGRevrefiekelgeekrkrsvlvvstsdrss 214
+ R+ ++qpl +G+ aiD+ + +g+GqR i ++ +Gk+++ + +i+++ + +v ++ + iG + + +ek + +++ +v+v + + +++
MMSYN1_0792 135 SVMARKSVSQPLETGILAIDSAIPIGKGQRELIIGDRQTGKTAIaIDAIINQRNKNVkCIYVAIGQKDSTIVQVVEKLKKYGAMEYTVVVNAGASQPA 232
*****************************************9874789999987777356688*********************************** PP
TIGR02546 215 lerlkaayvataiaeyfRdqgkkvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGasek....GsitalYtvLvegddmndpi 308
+ + yv+++iae + ++g +vl++ D l+++a r+++L pp r+ yp vf +rlleRa ++ Gsital + ++ d + i
MMSYN1_0792 233 PLQYLSPYVGITIAEEWMENGSDVLIVYDDLSKHAVSYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAARVNEnyggGSITALPIIETQAGDISAYI 330
********************************************************************98654334449******************* PP
TIGR02546 309 adevrsilDGhivLsrklaernhyPaiDvlaslsRvlkkvvskehkkaaaklrellakykevellirlGeYkkGsdkeaDkaikkldeikkflrqsld 406
+v si DG i+Ls +l +++ Pa+D+ s+sRv ++ k k+ ++l+ la+y e+e + + G d+++ +++ +i + l q+++
MMSYN1_0792 331 PTNVISITDGQIFLSSELFNQGIRPAVDIGPSVSRVGSSAQIKSIKQVSGTLKLELAQYYELESFAKFGS---DLDESTKATLDQGAKIIQMLIQKQH 425
*****************************************************************99996...5788999999999999999999988 PP
TIGR02546 407 eks 409
+
MMSYN1_0792 426 NPL 428
754 PP
>> TIGR01026 fliI_yscN: ATPase, FliI/YscN family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 178.5 3.0 1.7e-55 4.6e-53 51 424 .. 56 426 .. 6 440 .. 0.89
Alignments for each domain:
== domain 1 score: 178.5 bits; conditional E-value: 1.7e-55
TIGR01026 51 erkgsekkevvaevvgfegekvllmpyeevegveagskvlaknealsvkvgegllGrvldalGkplDekgkaldnveke.litapinPlkrakieevl 147
++v ++v+ +e++ v + + + + +++g+ v +n+ ++++vg++llGrv++al kp+D+ g +++++++ + + + + r+ +++ l
MMSYN1_0792 56 P------NNVYGMVLNLEESAVGAVILGDETLIREGDIVKRTNKVVETPVGDALLGRVINALSKPIDNLG-PINFTKTKpIERVATSVMARKSVSQPL 146
3......4699**********************************************************9.999999999****************** PP
TIGR01026 148 stGvrsidalltvgkGqrlGifaGsGvGkstL.lGmiarateadvnvial.iGerGrevkefiekdLgeeglkrsvvvvatsDespllrlkgayvata 243
+tG+ +id+ +++gkGqr i Gk ++ + i + + +v+ i + iG + + + +ek + ++ +vvv a + +++ l++ + yv+++
MMSYN1_0792 147 ETGILAIDSAIPIGKGQRELIIGDRQTGKTAIaIDAIINQRNKNVKCIYVaIGQKDSTIVQVVEKLKKYGAMEYTVVVNAGASQPAPLQYLSPYVGIT 244
*****************************98747889999999999886449************9999999*************************** PP
TIGR01026 244 iaeyfrdqGkdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraG....asekGsitafytvLveGDDlnePiaDevrailDGhi 337
iae++ ++G dvl+++D + + a + r ++L + pP ++ y+ vf l ++llera + Gsita+ + ++ D++ i +v +i DG i
MMSYN1_0792 245 IAEEWMENGSDVLIVYDDLSKHAVSYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAArvneNYGGGSITALPIIETQAGDISAYIPTNVISITDGQI 342
*********************************************************9753223457******************************* PP
TIGR01026 338 vLsralaerglyPaidvlasisrllkaivseekkkavrkfrellskykenedLiriGaYkkGsdkelDkaikkleklerflkqdiee 424
Ls +l+++g+ Pa+d+ s+sr+ ++ ++ k++ +++ l++y e e + G+ s k ++++ +k+++ l q++++
MMSYN1_0792 343 FLSSELFNQGIRPAVDIGPSVSRVGSSAQIKSIKQVSGTLKLELAQYYELESFAKFGSDLDESTK---ATLDQGAKIIQMLIQKQHN 426
*****************************9*************************9987765554...4566667777777777665 PP
>> TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 167.1 2.0 4.9e-52 1.4e-49 32 401 .. 57 429 .. 23 440 .. 0.89
Alignments for each domain:
== domain 1 score: 167.1 bits; conditional E-value: 4.9e-52
TIGR03497 32 kkvlaevvgfkeekvlLmPleevegiapgslveatgkklavkvgkellGkvldglGepldekelvkkkeklpleaeppnplkrkrikdvlevgvkaid 129
++v v+ ++e+ v + l++ + i g++v+ t+k ++ +vg++llG+v+++l +p+d+ ++++ +++ p+e+ + + ++rk ++++le+g+ aid
MMSYN1_0792 57 NNVYGMVLNLEESAVGAVILGDETLIREGDIVKRTNKVVETPVGDALLGRVINALSKPIDNLGPINFTKTKPIERVATSVMARKSVSQPLETGILAID 154
567888999999999999999***************************************************************************** PP
TIGR03497 130 glltvGkGqrvGifagsGvGkstl.lgmiarnakadinviaL.vGerGrevrefiekdLgeeGlkksvvvvatsdqpallrlkaalvataiaeyfrdq 225
+ + +GkGqr i Gk+++ + i + + ++ i + +G++ + + +ek ++ +vvv a + qpa l+ + +v+++iae + ++
MMSYN1_0792 155 SAIPIGKGQRELIIGDRQTGKTAIaIDAIINQRNKNVKCIYVaIGQKDSTIVQVVEKLKKYGAMEYTVVVNAGASQPAPLQYLSPYVGITIAEEWMEN 252
*********************98646778888888888875449***********996666678999******************************* PP
TIGR03497 226 GkkvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGk.sek...GsitglytvLvdgDdlnePiaDavrgilDGhivLsreLae 319
G +vl++ D + + a + r+++l + pP ++ y vf l +llera + +e+ Gsit+l + +++ d+ i+ v +i DG i Ls+eL +
MMSYN1_0792 253 GSDVLIVYDDLSKHAVSYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAARvNENyggGSITALPIIETQAGDISAYIPTNVISITDGQIFLSSELFN 350
*************************************************9753323449*************************************** PP
TIGR03497 320 knhyPaidvlksvsrvmeeivseehkelaeklrellavykeaedlikigaykkgsnkkideaiekkekinkfLkqkidekvt 401
++ Pa+d+ svsrv ++ + k+++++l+ la y e e + k g+ + + ++++++ ki + L qk+++ ++
MMSYN1_0792 351 QGIRPAVDIGPSVSRVGSSAQIKSIKQVSGTLKLELAQYYELESFAKFGSDLDE---STKATLDQGAKIIQMLIQKQHNPLE 429
*********************************************999975444...4445666677788888888776554 PP
>> TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 166.5 0.4 6.2e-52 1.7e-49 2 408 .. 30 431 .. 29 440 .. 0.89
Alignments for each domain:
== domain 1 score: 166.5 bits; conditional E-value: 6.2e-52
TIGR03498 2 rvsevkgllvevaGlsaavrlGdlveieaeegkkvlaevvgleedevllmpfeslegvelgaavvveeealevrpeeswlGRvidalgepiDgkgala 99
+v++v + + + Gl +a +G+++++ + +v + v++lee+ v ++ + + ++ g+ v +++ +e + +++lGRvi+al++piD+ g+++
MMSYN1_0792 30 TVVSVGDGIALIYGLDNA-IMGEFLKFPN----NVYGMVLNLEESAVGAVILGDETLIREGDIVKRTNKVVETPVGDALLGRVINALSKPIDNLGPIN 122
666666666666777666.5677766653....46899**********************************************************98 PP
TIGR03498 100 egeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstl.lsmlaraaaaDvvvi.alvGeRGRevrefleddlgeeglk 195
+++ +p++ +++ ++Rk v+++l+tG+ +id+ +++++GqR i Gk+++ + ++++ + +v i +G + + +++e+ ++
MMSYN1_0792 123 FTKT-KPIERVATSVMARKSVSQPLETGILAIDSAIPIGKGQRELIIGDRQTGKTAIaIDAIINQRNKNVKCIyVAIGQKDSTIVQVVEKLKKYGAME 219
7765.799999*******************************************98734555555555554441569***********988888889* PP
TIGR03498 196 rsvvvvatsDesplmRrkaayvalaiaeyfRdqgkdvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGpG..aegkGsitglf 291
+vvv a + +++ +++ ++yv ++iae + ++g+dvl++ D + ++a + R+++l pp Y+ vf rLLeRa + g Gsit+l
MMSYN1_0792 220 YTVVVNAGASQPAPLQYLSPYVGITIAEEWMENGSDVLIVYDDLSKHAVSYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAARVneNYGGGSITALP 317
**********************************************************************************98722446789***** PP
TIGR03498 292 tvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRlakkvlspeekklvkrlrallaryeetedlirlGayrkGsdaevDeavkl 389
+ ++ d + +v +i DG i l+ +++++g Pa+++ svsR+ + ++ + k++ l+ la+y e e + + G+ d++ +++
MMSYN1_0792 318 IIETQAGDISAYIPTNVISITDGQIFLSSELFNQGIRPAVDIGPSVSRVGSSAQIKSIKQVSGTLKLELAQYYELESFAKFGS---DLDESTKATLDQ 412
**************************************************************************999999986...567777777888 PP
TIGR03498 390 vpkieeflkqekeeatsle 408
+ki ++l q+++++ +
MMSYN1_0792 413 GAKIIQMLIQKQHNPLEQV 431
8999999999999887654 PP
>> TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 135.4 3.7 1.6e-42 4.6e-40 39 351 .. 61 369 .. 53 467 .. 0.87
Alignments for each domain:
== domain 1 score: 135.4 bits; conditional E-value: 1.6e-42
TIGR01041 39 GqvldsseglvvvqvfegttgldkeatkvrflGetlklkvsedllGrilngsGepidgGpeivpderrdinGaalnpaareypeefiqtGisaidGln 136
G vl+ +e +v v+ g + l +e+ v+ + + ++ +v llGr++n++ +pid+ i + + i+ a +ar+ ++ ++tGi aid
MMSYN1_0792 61 GMVLNLEE-SAVGAVILGDETLIREGDIVKRTNKVVETPVGDALLGRVINALSKPIDNLGPINFTKTKPIERVATSVMARKSVSQPLETGILAIDSAI 157
66666554.4566778888999999999******************************999************************************* PP
TIGR01041 137 tlvrGqklpifsgsGlphnelalqiarqakvrgeesefavvfaalGitaeeanffkkdfektGaleravvflnladdpaverivtprlaltvaeylaf 234
+ +Gq+ i+ + ia a +++ +++ ++ a+G + + + ++++k Ga+e +vv+ + a +pa + ++p + +t+ae
MMSYN1_0792 158 PIGKGQRELIIGDRQTGKTA----IAIDAIINQRNKNVKCIYVAIGQKDSTIVQVVEKLKKYGAMEYTVVVNAGASQPAPLQYLSPYVGITIAEEW-M 250
*******9999876655544....66689999*************************************************************975.6 PP
TIGR01041 235 ekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvkGkk..GsitqipiltmpdddithpipdltGyiteGqivlsrel 330
e++ vl++ dl+ ++ + r++s pGr+ ypG ++ + l era rv+ + Gsit +pi+ di+ ip it+Gqi+ls el
MMSYN1_0792 251 ENGSDVLIVYDDLSKHAVSYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAARVNENYggGSITALPIIETQAGDISAYIPTNVISITDGQIFLSSEL 348
9999**************************************************9875227************************************* PP
TIGR01041 331 hrkGiyppinvlpslsrlmkd 351
+++Gi+p +++ ps+sr+ ++
MMSYN1_0792 349 FNQGIRPAVDIGPSVSRVGSS 369
*****************8654 PP
>> TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.2 0.9 7.3e-35 2.1e-32 39 362 .. 61 371 .. 52 382 .. 0.91
Alignments for each domain:
== domain 1 score: 110.2 bits; conditional E-value: 7.3e-35
TIGR01040 39 gqvlevsgekavvqvfegtsgidakkttveftgdilrlpvsedmlgrvfngsgkpidkgpkvlaedyldingqpinpkariypeemiqtgisaidvmn 136
g vl+++ e av v+ g + + v+ t +++++pv + +lgrv+n kpid+ ++ + i+ + +ar + ++tgi aid+
MMSYN1_0792 61 GMVLNLE-ESAVGAVILGDETLIREGDIVKRTNKVVETPVGDALLGRVINALSKPIDNLGPINFTKTKPIERVATSVMARKSVSQPLETGILAIDSAI 157
5566654.5678888888888888889999****************************999999999******************************* PP
TIGR01040 137 siargqkiplfsaaglphneiaaqicrqaglvkksekdvkdekeenfaivfaamgvnletarffkqdfeengslervtlflnlandptieriitprla 234
i +gq+ ++ rq+g + +++ +++++n ++ a+g t +++++ g++e +++ a +p+ + ++p +
MMSYN1_0792 158 PIGKGQRELIIGD-------------RQTGKTAIAIDAIINQRNKNVKCIYVAIGQKDSTIVQVVEKLKKYGAMEYTVVVNAGASQPAPLQYLSPYVG 242
******9887654.............6666666666778889999**********************************999**************** PP
TIGR01040 235 lttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrvegr..ngsitqipiltmpnddithpipdltgyite 330
+t ae e + vl++ d+s +a + r++s pgr +pg ++ + + era rv+ gsit +pi+ di+ ip it+
MMSYN1_0792 243 ITIAEEW-MENGSDVLIVYDDLSKHAVSYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAARVNENygGGSITALPIIETQAGDISAYIPTNVISITD 339
****976.58899**************************************************9862258**************************** PP
TIGR01040 331 gqiyvdrqlhnrqiyppinvlpslsrlmksai 362
gqi++ +l+n+ i p +++ ps+sr+ sa
MMSYN1_0792 340 GQIFLSSELFNQGIRPAVDIGPSVSRVGSSAQ 371
**************************998875 PP
>> TIGR01039 atpD: ATP synthase F1, beta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.4 0.0 0.19 52 412 456 .. 23 70 .. 14 76 .. 0.81
2 ! 110.0 1.3 1e-34 2.8e-32 47 407 .. 65 424 .. 46 432 .. 0.90
Alignments for each domain:
== domain 1 score: 0.4 bits; conditional E-value: 0.19
TIGR01039 412 vftGspGkyvklkdtie...gfkeileGkyddlpeqafylvGsieevv 456
+G +v++ d i g+++ + G++ ++p++ + +v ++ee +
MMSYN1_0792 23 IVQTEQGTVVSVGDGIAliyGLDNAIMGEFLKFPNNVYGMVLNLEESA 70
5566789999999976433389999****************9999865 PP
== domain 2 score: 110.0 bits; conditional E-value: 1e-34
TIGR01039 47 hlGddlvraialdstdGlvrglevkdtgkpievpvGkevlGrilnvlGepidekgevkkkeklsihrkapsfeeqstkveiletGikvidllapyakG 144
+l + v a+ l+ ++ g vk t+k +e pvG++ lGr++n+l +pid+ g+++ +++++i r a s +++ ++ letGi id p+ kG
MMSYN1_0792 65 NLEESAVGAVILGDETLIREGDIVKRTNKVVETPVGDALLGRVINALSKPIDNLGPINFTKTKPIERVATSVMARKSVSQPLETGILAIDSAIPIGKG 162
5677888888888766666677788999********************************************************************** PP
TIGR01039 145 GkiglfGGaGvGktvliqelinniakehsGlsvfaGvGertreGndlylelkesgvldkvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvll 242
+ + G Gkt + + i n ++ + ++++ +G++ ++ +lk+ g ++++++v +p + + g+t+ae + ++ g dvl+
MMSYN1_0792 163 QRELIIGDRQTGKTAIAIDAIINQ-RNKNVKCIYVAIGQKDSTIVQVVEKLKKYGAMEYTVVVNAGASQPAPLQYLSPYVGITIAEEWMEN-GSDVLI 258
**************8877766553.4556678889999999999*******************************************9875.56**** PP
TIGR01039 243 fidnifrftqaGsevsallGrlpsavGyqptlatemGelqeritstkk....gsitsvqavyvpaddltdpapattfahldattvlsrkiaelGiypa 336
d++ +++ + ++s ll r p y + +l er + ++ gsit++ + a d++ p+ + + d+++ ls +++++Gi pa
MMSYN1_0792 259 VYDDLSKHAVSYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAARVNEnyggGSITALPIIETQAGDISAYIPTNVISITDGQIFLSSELFNQGIRPA 356
****************************9999999999999998876544448********************************************* PP
TIGR01039 337 vdpldstsrlldpevvGeehyevarevqeilqrykelqdiiailGldelseedklvverarkierflsqpf 407
vd s sr+ +++ + +v+ ++ l +y el+ a +G d l e k+++++ ki ++l q+
MMSYN1_0792 357 VDIGPSVSRVGSSAQIK-SIKQVSGTLKLELAQYYELES-FAKFGSD-LDESTKATLDQGAKIIQMLIQKQ 424
*********99888875.456899999999*******87.5888965.999*******9999999998865 PP
>> TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.0 0.2 2.9e-26 8.2e-24 37 369 .. 61 394 .. 29 426 .. 0.90
Alignments for each domain:
== domain 1 score: 82.0 bits; conditional E-value: 2.9e-26
TIGR03305 37 evlaqldakkvrgialtateglargmavkdsgaplkapvgkeilsrvfdvfgntidrreslkdvkwrsvhqappaltrrssksevfetgikaidvlvp 134
++++l++ v ++ l + g+ vk + + +++pvg ++l+rv++ + ++id+ + + +k + + + ++++ r s s+ +etgi aid +p
MMSYN1_0792 61 GMVLNLEESAVGAVILGDETLIREGDIVKRTNKVVETPVGDALLGRVINALSKPIDNLGPINFTKTKPIERVATSVMARKSVSQPLETGILAIDSAIP 158
578899999999999999999999************************************************************************** PP
TIGR03305 135 lerggkaglfggagvgktvlltelihnlvsqeegvslfcgigercregeelyremkeagvldntvmvfgqmneppgarfrvglaaltmaeyfrddekk 232
+ +g + ++g gkt + + i n + ++ ++ ig++ ++ ++k+ g ++ tv+v +p ++ + +t+ae + + +
MMSYN1_0792 159 IGKGQRELIIGDRQTGKTAIAIDAIINQRN-KNVKCIYVAIGQKDSTIVQVVEKLKKYGAMEYTVVVNAGASQPAPLQYLSPYVGITIAEEWME-NGS 254
*******************99999988654.455689******************************************************986.578 PP
TIGR03305 233 dvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeriatted....aaitsiqavyvpaddftdpaavhtfshlsaslvlsrkraseg 326
dvl++ d++ + + ++s ll + p r y + + l er a ++ ++it++ + a d++ +s + ls ++g
MMSYN1_0792 255 DVLIVYDDLSKHAVSYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAARVNEnyggGSITALPIIETQAGDISAYIPTNVISITDGQIFLSSELFNQG 352
********************************99888777888887776554222378999999999999999988899999999************* PP
TIGR03305 327 lypaidplkstsklatpsivgerhyklarevrrvlaqyeelkd 369
+ pa+d s s++ + + + + +++ ++ laqy el
MMSYN1_0792 353 IRPAVDIGPSVSRVGSSAQIKS-IKQVSGTLKLELAQYYELES 394
*************998887755.56899999*********975 PP
>> TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.7 0.5 0.00021 0.059 2 93 .. 28 118 .. 27 123 .. 0.94
2 ! 63.9 0.1 8.1e-21 2.3e-18 190 429 .. 127 359 .. 118 371 .. 0.86
3 ? 0.4 0.2 0.13 38 457 511 .. 468 520 .. 443 525 .] 0.72
Alignments for each domain:
== domain 1 score: 9.7 bits; conditional E-value: 0.00021
TIGR01043 2 kGeivrvsGplvvaeglkgakmyevvkvgeekliGeiiriegdkaviqvyeetsGikpgepvestGaplsvelGpGllesiydGvqrpldvl 93
+G++v+v + + gl++a m e +k + ++ G ++++e+ + + + + i+ g+ v++t + + +G ll+++ + + +p+d+l
MMSYN1_0792 28 QGTVVSVGDGIALIYGLDNAIMGEFLKFPN-NVYGMVLNLEESAVGAVILGDETLIREGDIVKRTNKVVETPVGDALLGRVINALSKPIDNL 118
79999**999*****************987.589********9999999999999**********************************987 PP
== domain 2 score: 63.9 bits; conditional E-value: 8.1e-21
TIGR01043 190 wpv.rkkrpvkeklepeeplvtGqrildtlfpiakGGtaaipGpfGsGktv.tqqslakwsdaei.vvyiGcGerGnemtevleefpeledpktGkpl 284
p+ r++ v +++ ++pl tG+ +d+ pi kG i G +Gkt + + + + + ++ +y+ G++ + +v+e++ ++
MMSYN1_0792 127 KPIeRVATSVMARKSVSQPLETGILAIDSAIPIGKGQRELIIGDRQTGKTAiAIDAIINQRNKNVkCIYVAIGQKDSTIVQVVEKLKKYG-------A 217
55536667788899999********************************9615566666666665479***************9987764.......5 PP
TIGR01043 285 lertvliantsnmpvaareasiytGitiaeyfrdmGydvalvadstsrwaealreisgrleempgeeGypa...ylasrlaefyeraGrvktlgseer 379
+e tv++ + p + s y+Gitiae + + G dv++v d s+ a + r++s l pg e yp yl srl era rv+ +
MMSYN1_0792 218 MEYTVVVNAGASQPAPLQYLSPYVGITIAEEWMENGSDVLIVYDDLSKHAVSYRQMSLLLRRPPGREAYPGdvfYLHSRL---LERAARVNENYGG-- 310
9*********************************************************************8444666665...79***99876666.. PP
TIGR01043 380 egsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainw 429
gs+t + + Gd+s + n + i l ++l ++ pa++
MMSYN1_0792 311 -GSITALPIIETQAGDISAYIPTNVISITDGQIFLSSELFNQGIRPAVDI 359
.9**********************99999888888888888888888776 PP
== domain 3 score: 0.4 bits; conditional E-value: 0.13
TIGR01043 457 dealellqkeaelqeivrlvGsdalpekeklvlevarlireaflkqnafdevdty 511
++a el +k +e + + ++ l+e +k+vl++++ i e k ++f ++ y
MMSYN1_0792 468 KNAFELRKKLDEQKTFDDQLQQQILKEAQKVVLKITKNINEY--KPETFGNISEY 520
456666677777777777778899**************9984..55666666655 PP
>> TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.2 0.3 0.00067 0.19 3 93 .. 29 118 .. 27 123 .. 0.88
2 ! 42.4 0.1 2.9e-14 8.2e-12 191 418 .. 126 344 .. 119 373 .. 0.85
Alignments for each domain:
== domain 1 score: 8.2 bits; conditional E-value: 0.00067
TIGR01042 3 gsvkkvsgpvvvaeemagaamyelvrvgheelvgeiirlegdkatiqvyeetagltvgdpvlrtgkplsvelgpgilgnifdgiqrplkai 93
g+v +v + + a m e+++ +++ g ++ le+ + + + + + gd v+rt+k + +g +lg + + + +p++++
MMSYN1_0792 29 GTVVSVGDGIALIYGLDNAIMGEFLKFP-NNVYGMVLNLEESAVGAVILGDETLIREGDIVKRTNKVVETPVGDALLGRVINALSKPIDNL 118
7788888888888888889999999985.6899*******99999888888889*********************************9875 PP
== domain 2 score: 42.4 bits; conditional E-value: 2.9e-14
TIGR01042 191 vwpv.rsprpvaeklaadtplltgqrvldalfpsvqggttaipgafgcgktvis.qslskysnsdv.ivyvgcgergnemaevlrdfpeltveldgre 285
+ p+ r++ v+ + + ++pl tg +d+ p +g i g gkt i+ +++ n +v +yv g++ + +v+ ++ ++
MMSYN1_0792 126 TKPIeRVATSVMARKSVSQPLETGILAIDSAIPIGKGQRELIIGDRQTGKTAIAiDAIINQRNKNVkCIYVAIGQKDSTIVQVVEKL---------KK 214
55654778899999*************************************99745777777766538*********9999998765.........45 PP
TIGR01042 286 esimkrttlvantsnmpvaareasiytgitlaeyfrdmgynvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvkclgsper 383
m t +v + p + s y git+ae + + g +v ++ d s+ a + r++s l p + yp + + + era rv+
MMSYN1_0792 215 YGAMEYTVVVNAGASQPAPLQYLSPYVGITIAEEWMENGSDVLIVYDDLSKHAVSYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAARVNE---NYG 309
66799999999999***********************************************************86666666678*****974...445 PP
TIGR01042 384 egsvsivgavsppggdfsdpvtsatlgivqvfwgl 418
gs++ + + gd+s + + ++i++ l
MMSYN1_0792 310 GGSITALPIIETQAGDISAYIPTNVISITDGQIFL 344
799****************9999999998544444 PP
>> TIGR00767 rho: transcription termination factor Rho
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.3 0.1 1.6e-10 4.6e-08 158 363 .. 152 365 .. 105 385 .. 0.75
Alignments for each domain:
== domain 1 score: 30.3 bits; conditional E-value: 1.6e-10
TIGR00767 158 vldliaPiGkGqralivaPPkaGktvllqeianaitrnnpevelivlliderPeevtdmqrsvk......gevvastf.depasrhvqvaelviekak 248
+d ++PiGkGqr li+ ++Gkt + i i + n +v+ i + i ++ + ++ ++k vv + +pa + i a+
MMSYN1_0792 152 AIDSAIPIGKGQRELIIGDRQTGKTAIA--IDAIINQRNKNVKCIYVAIGQKDSTIVQVVEKLKkygameYTVVVNAGaSQPAPLQYLSPYVGITIAE 247
368899*******************995..5566778888999999999888877766655553121111345544440444444444456779**** PP
TIGR00767 249 rlvekkkdvvilldsitrlarayntvs.....PasGkilsGGvdatalhkPkrflG.aarnieeGGsltiiatalvetGs.kmdevifeefkgtGnae 339
+e++ dv+i+ d +++ a +y ++s P G ++ r+l aar e+ G +i a ++et + i + + + +
MMSYN1_0792 248 EWMENGSDVLIVYDDLSKHAVSYRQMSlllrrPPGREAYPG----DVFYLHSRLLErAARVNENYGGGSITALPIIETQAgDISAYIPTNVISITDGQ 341
***********************998622222333333444....45676778775377877877777788889999965256677889999999*** PP
TIGR00767 340 lkldrklaerrvfPaidikksGtr 363
+ l+ +l ++ + Pa+di +s +r
MMSYN1_0792 342 IFLSSELFNQGIRPAVDIGPSVSR 365
******************999877 PP
>> TIGR03881 KaiC_arch_4: KaiC domain protein, PAE1156 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.8 0.0 3e-05 0.0085 3 71 .. 146 212 .. 144 269 .. 0.86
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 3e-05
TIGR03881 3 lstGveeldklleGGiPrGffvavvGePGvGktilclhfiakGlregdkviyvtteesresivrqarqf 71
l+tG+ ++d+++ i +G ++G+ +Gkt +++ i++ +++ k+iyv+ ++ iv+ +++
MMSYN1_0792 146 LETGILAIDSAIP--IGKGQRELIIGDRQTGKTAIAIDAIINQRNKNVKCIYVAIGQKDSTIVQVVEKL 212
5799999999996..66999999*******************************999988888765544 PP
>> TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.9 0.1 5.1e-05 0.014 19 65 .. 165 211 .. 149 224 .. 0.83
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 5.1e-05
TIGR03880 19 ivviGeaGtGkttlslqflyeGLknGekalyisleereeeilgsaks 65
+iG+ tGkt +++ + + ++ k++y+++ ++ ++i++ +++
MMSYN1_0792 165 ELIIGDRQTGKTAIAIDAIINQRNKNVKCIYVAIGQKDSTIVQVVEK 211
468**************************************998775 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (525 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 394 (0.0877897); expected 89.8 (0.02)
Passed bias filter: 170 (0.0378788); expected 89.8 (0.02)
Passed Vit filter: 30 (0.00668449); expected 4.5 (0.001)
Passed Fwd filter: 16 (0.00356506); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 16 [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.25
# Mc/sec: 3015.69
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0792 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0793 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0793.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0793/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0793 [L=181]
Description: ATP_synt_delta: ATP synthase F1, delta subunit 5=Equivalog Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-24 84.2 13.7 3.5e-24 84.0 13.7 1.0 1 TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit
4.1e-05 21.4 0.2 4.7e-05 21.3 0.2 1.3 1 TIGR03321 alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B
Domain annotation for each model (and alignments):
>> TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.0 13.7 1.5e-27 3.5e-24 3 171 .. 9 178 .. 8 179 .. 0.90
Alignments for each domain:
== domain 1 score: 84.0 bits; conditional E-value: 1.5e-27
TIGR01145 3 rpYakAlfelAeekssleevkeelnfvkevlknekelkkllsnPlisaekkkel..ikkvlge.qldesslnllllLverkRlaalpdileeFlklsk 97
+ Ya Alf++A +++ ++ ++ + + lk+++e++kl+s + ++ek+ ++ i++ ++ d + n l++Lve++ + + il+ +k
MMSYN1_0793 9 NNYATALFNIAVKEKLVDDYIIQVDALIKSLKDKDEFNKLVSF-SNKQEKQDAIliIENTFSSfGFDIYLINALKILVENQLFINTRMILKVLYKKLL 105
57**********************9999999999*******98.666666655411455555323788899*********************999999 PP
TIGR01145 98 eaeqtaevevisavalteeqqakiaeklekklkakkvklalkvdksligGviikigdkviDgsvrgqLkrlsrq 171
++++++ ev+s +lt++q+++i++k+ +k+++ kv+l +k+d++ligG+++ ++dkv+Dgs++ +L+ l++q
MMSYN1_0793 106 AYKNIVLGEVYSTEKLTKTQLNAIKKKISNKVNK-KVELVNKIDPTLIGGIKVSVEDKVFDGSIKAKLEALKKQ 178
9*********************************.**********************************99987 PP
>> TIGR03321 alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.3 0.2 2.1e-08 4.7e-05 181 245 .. 115 179 .. 9 180 .. 0.80
Alignments for each domain:
== domain 1 score: 21.3 bits; conditional E-value: 2.1e-08
TIGR03321 181 vrsafeLpeeqrekikktiretlkeeiklrfetepdlisGieltagGqklaWsvedyLesleedv 245
v s+ +L++ q ++ikk i + ++++++l ++ p li+Gi+++++ + s++ +Le+l++++
MMSYN1_0793 115 VYSTEKLTKTQLNAIKKKISNKVNKKVELVNKIDPTLIGGIKVSVEDKVFDGSIKAKLEALKKQM 179
7899*********************************************************9976 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (181 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 398 (0.0886809); expected 89.8 (0.02)
Passed bias filter: 72 (0.0160428); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 1368.02
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0793 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0794 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0794.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0794/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0794 [L=181]
Description: ATP_synt_b: ATP synthase F0, B subunit 5=Equivalog Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.4e-25 86.3 25.0 5.1e-25 86.0 25.0 1.0 1 TIGR01144 ATP_synt_b: ATP synthase F0, B subunit
1.4e-14 52.5 13.4 1.7e-14 52.2 13.4 1.0 1 TIGR03321 alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B
0.0028 15.7 6.6 0.0028 15.7 6.6 1.4 1 TIGR02499 HrpE_YscL_not: type III secretion apparatus protei
------ inclusion threshold ------
0.17 8.7 3.2 0.097 9.5 1.5 1.4 1 TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporte
Domain annotation for each model (and alignments):
>> TIGR01144 ATP_synt_b: ATP synthase F0, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 86.0 25.0 4.6e-28 5.1e-25 2 147 .] 35 180 .. 34 180 .. 0.98
Alignments for each domain:
== domain 1 score: 86.0 bits; conditional E-value: 4.6e-28
TIGR01144 2 lisfillvlllkKyvwpplikvletRqekIaddlasaekakkelalaqkkaqellkeakeeaaeiienAnkrkseikeeikkeAeeerekilakaeae 99
l++ i+lv+ l K v++p +++e+ ++kI + l++a +++ ++++ k+a+ ll++ak+e+ +i++ A ++ +k++i+++A+ +++ i a+
MMSYN1_0794 35 LLATIILVIVLTKLVYKPYKQMIEKQRQKITEVLSDAIEKQTQANIKIKQANTLLEDAKTESVSILKTARMDAEIQKNKIIDNANLQAKNIQSYAQNS 132
6789********************************************************************************************** PP
TIGR01144 100 ieaekerareelrkevadLavalaekiiekeidekaqkdlidklvael 147
i++ek +a+ e+++ +++La++ aeki++keid+k++k+li++++++l
MMSYN1_0794 133 IKQEKIKAQLEIKNTIVNLAINSAEKILNKEIDKKTNKQLIEEFIKDL 180
*********************************************976 PP
>> TIGR03321 alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.2 13.4 1.5e-17 1.7e-14 8 157 .. 31 180 .. 29 181 .] 0.98
Alignments for each domain:
== domain 1 score: 52.2 bits; conditional E-value: 1.5e-17
TIGR03321 8 vvAQviNFLiLvwLLkrFlYkpildaldeREkkiaseladAdekkkeAeqereeyeekneeldqqreellekakeeveaerqrlldeareeadeirkk 105
++A ++ +iLv +L + +Ykp + +++ +ki++ l+dA ek+++A+ + ++ + +e + + ++l++a+ ++e ++++++d+a +a++i++
MMSYN1_0794 31 FIAHLLATIILVIVLTKLVYKPYKQMIEKQRQKITEVLSDAIEKQTQANIKIKQANTLLEDAKTESVSILKTARMDAEIQKNKIIDNANLQAKNIQSY 128
78999999****************************************************************************************** PP
TIGR03321 106 raealreeqaelkeeierrtqaevfaiarkvltdLadtdleekmveafvkrl 157
++++++e+ + + ei++ + + + a+k+l++ d++ +++++e+f+k l
MMSYN1_0794 129 AQNSIKQEKIKAQLEIKNTIVNLAINSAEKILNKEIDKKTNKQLIEEFIKDL 180
************************************************9977 PP
>> TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.7 6.6 2.5e-06 0.0028 3 109 .. 71 179 .. 69 181 .] 0.89
Alignments for each domain:
== domain 1 score: 15.7 bits; conditional E-value: 2.5e-06
TIGR02499 3 vlraeelaala..qAeailaaArqkaekliadaeeeaeasrqegyeqgleqawqeaaaqlvewlqeaeqleasleerlaelvlealeqildevdesel 98
+++ + +a + qA+++l++A+ + ++++a+ ae ++ + + ++ qa ++ qe+ + + ++++++ l +++ e+il+++ ++++
MMSYN1_0794 71 AIEKQTQANIKikQANTLLEDAKTESVSILKTARMDAEIQKNKIIDNANLQAKNIQSYAQNSIKQEKIKAQLEIKNTIVNLAINSAEKILNKEIDKKT 168
5666666666688****************************************9999999999999999999*********************88888 PP
TIGR02499 99 lvrllrellra 109
++l+ e +++
MMSYN1_0794 169 NKQLIEEFIKD 179
88887776665 PP
>> TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.5 1.5 8.7e-05 0.097 179 249 .. 36 106 .. 23 114 .. 0.75
Alignments for each domain:
== domain 1 score: 9.5 bits; conditional E-value: 8.7e-05
TIGR00895 179 iiplllllllikvLpEsikflvekkpekvrkiln.aiapslqaeaqselaeekseekkkrsvvkllfkgkla 249
+++++l+++l+k + ++k ++ek+ +k+ ++l+ ai++++qa+ + + a++ e+ k+++v++l+++++
MMSYN1_0794 36 LATIILVIVLTKLVYKPYKQMIEKQRQKITEVLSdAIEKQTQANIKIKQANT-LLEDAKTESVSILKTARMD 106
6899********************9999999998246666555555433333.3345677778877777765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (181 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 918 (0.204545); expected 89.8 (0.02)
Passed bias filter: 147 (0.032754); expected 89.8 (0.02)
Passed Vit filter: 16 (0.00356506); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1299.62
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0794 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0795 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0795.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0795/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0795 [L=101]
Description: ATP_synt_c: ATP synthase F0, C subunit 5=Equivalog Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-12 44.8 4.1 4.2e-12 43.9 4.1 1.5 1 TIGR01260 ATP_synt_c: ATP synthase F0, C subunit
1.1e-07 30.4 4.9 1.1e-07 30.3 4.5 1.3 1 TIGR03322 alt_F1F0_F0_C: alternate F1F0 ATPase, F0 subunit C
Domain annotation for each model (and alignments):
>> TIGR01260 ATP_synt_c: ATP synthase F0, C subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.9 4.1 1.9e-15 4.2e-12 3 57 .. 45 99 .. 36 100 .. 0.98
Alignments for each domain:
== domain 1 score: 43.9 bits; conditional E-value: 1.9e-15
TIGR01260 3 iGaaiGigilggKflEsaARQPelagllrtkmfivaglvdaipiiavviaLlllf 57
+G+++G+g++g + ++ R Pe+a+++ ++m++ ag+ ++ +i+++via+ll+f
MMSYN1_0795 45 LGTGVGQGLIGQGACLAIGRNPEMASKVTSTMIVSAGISESGAIYSLVIAILLIF 99
7*****************************************************9 PP
>> TIGR03322 alt_F1F0_F0_C: alternate F1F0 ATPase, F0 subunit C
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.3 4.5 5e-11 1.1e-07 12 78 .. 35 100 .. 20 101 .] 0.91
Alignments for each domain:
== domain 1 score: 30.3 bits; conditional E-value: 5e-11
TIGR03322 12 vtaGltiaiGsiGpalgeGravaqalealaqqpdasatitrtlfvGlamiesvaiycfvvsmilifa 78
+ aGl+ ++G +G +g+G + a a+ ++p+ ++ +t t+ v + es aiy +v++++lif
MMSYN1_0795 35 IGAGLA-SVGILGTGVGQGLIGQGACLAIGRNPEMASKVTSTMIVSAGISESGAIYSLVIAILLIFV 100
567775.79********************************************************95 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (101 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 211 (0.0470143); expected 89.8 (0.02)
Passed bias filter: 78 (0.0173797); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 763.37
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0795 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0796 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0796.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0796/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0796 [L=287]
Description: atpB 4=Probable Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.5e-15 53.6 24.5 2e-11 42.2 16.9 2.8 2 TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit
3.8e-13 47.5 12.7 1.5e-11 42.3 8.4 2.1 2 TIGR03306 altF1_A: alternate F1F0 ATPase, F0 subunit A
Domain annotation for each model (and alignments):
>> TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.2 16.9 9e-15 2e-11 13 181 .. 22 181 .. 5 193 .. 0.77
2 ! 14.5 0.8 2.6e-06 0.0059 195 226 .. 232 263 .. 215 264 .. 0.77
Alignments for each domain:
== domain 1 score: 42.2 bits; conditional E-value: 9e-15
TIGR01131 13 lsltllllilllallillilsals........klvpsrlqlllesiletvlsivkeqigskklkffpliltlflfilisNllglipyvftpTshlsvt 102
+ +t+ll+++++ ++ +++ + + + +l+++++++v +iv + +g+k +k++p i+ lf +i+i ll+++ + + T ++ vt
MMSYN1_0796 22 ILITILLVVIIVCTISIIY----NkkvrnyniDDKMPGFLVLVNVFVASVENIVVSILGKKYQKLTPYIMYLFAYIFIGCLLSILGLEAQGT-SFTVT 114
3444444444444444444....24555976633444578999*******************99******************9987766655.6999* PP
TIGR01131 103 lglallvwlgltisglakkkkkflallvpsgtpllLipllvlielisllarplsLslRLfaNilAGhlllkllssllvs 181
l+++++ ++++++ g++ +k f++ + p +el + ++ +s+s+RLf+N+++G ++l ll +ll+
MMSYN1_0796 115 LSMGMVTFIMIYYFGIKYQKLAFFKRF---RNP---------VELFTQFTPLISISFRLFGNLIGGSIILGLLYGLLIG 181
**********99999999777777544...445.........5******************************998875 PP
== domain 2 score: 14.5 bits; conditional E-value: 2.6e-06
TIGR01131 195 lilvalvileiavaliQAyVFtlLtslYlsda 226
++ ++ + ++++ ++iQ+ VF++Lt +Y s +
MMSYN1_0796 232 IMPFLHMYFDLFSGVIQSTVFAMLTLSYWSAQ 263
33456688********************9876 PP
>> TIGR03306 altF1_A: alternate F1F0 ATPase, F0 subunit A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.3 8.4 6.7e-15 1.5e-11 15 178 .. 18 176 .. 10 183 .. 0.81
2 ! 7.3 0.1 0.00033 0.74 181 214 .. 229 262 .. 222 265 .. 0.84
Alignments for each domain:
== domain 1 score: 42.3 bits; conditional E-value: 6.7e-15
TIGR03306 15 klnativltwllmlllvig.sklit...rklskglelsrwqnllevlvtgikeqiedvglkkprkylpflgtlflfiavanllsvipGyeaptGslst 108
k+n + +t ll++++v + s + r+ + + +++ + l++v+v+++++ + + kk +k p++ lf +i + lls++ G ea s++
MMSYN1_0796 18 KFNGIL-ITILLVVIIVCTiSIIYNkkvRNYNIDDKMPGFLVLVNVFVASVENIVVSILGKKYQKLTPYIMYLFAYIFIGCLLSIL-GLEAQGTSFTV 113
455544.44444444444404444411144556788999999****************99***********************987.9********** PP
TIGR03306 109 taalavcvfvavplfGikerglkeylksylkptvlllpfniigelsrtlalavrlfGnlmsGamilaill 178
t ++ + f+ + +fGik + l ++k++ +p+ l+ ++++ ++++ rlfGnl+ G++il++l
MMSYN1_0796 114 TLSMGMVTFIMIYYFGIKYQKLA-FFKRFRNPVELF------TQFTPLISISFRLFGNLIGGSIILGLLY 176
********************996.789999988766......5567778899**************9985 PP
== domain 2 score: 7.3 bits; conditional E-value: 0.00033
TIGR03306 181 splifpvlmqvlglltGmvqayifsvlatvyiaa 214
+ i+p l ++l+ G++q+ +f++l+ y +a
MMSYN1_0796 229 TTPIMPFLHMYFDLFSGVIQSTVFAMLTLSYWSA 262
44478999999*****************999876 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (287 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 311 (0.0692959); expected 89.8 (0.02)
Passed bias filter: 79 (0.0176025); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 2060.72
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0796 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0797 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0797.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0797/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0797 [L=78]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (78 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 156 (0.0347594); expected 89.8 (0.02)
Passed bias filter: 62 (0.0138146); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.18
# Mc/sec: 622.29
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0797 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0798 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0798.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0798/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0798 [L=207]
Description: upp: uracil phosphoribosyltransferase 5=Equivalog Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.6e-83 276.3 0.3 4e-83 276.1 0.3 1.0 1 TIGR01091 upp: uracil phosphoribosyltransferase
5e-08 30.2 0.1 7e-08 29.7 0.1 1.2 1 TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
3.1e-06 25.4 0.1 6e-06 24.4 0.1 1.3 1 TIGR01090 apt: adenine phosphoribosyltransferase
4.8e-05 21.0 0.0 6.6e-05 20.6 0.0 1.2 1 TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
0.00025 18.7 0.0 0.00031 18.4 0.0 1.3 1 TIGR01744 XPRTase: xanthine phosphoribosyltransferase
0.0021 15.8 0.0 0.0033 15.2 0.0 1.3 1 TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
0.0025 15.8 0.0 0.0044 14.9 0.0 1.4 1 TIGR00201 comF: comF family protein
------ inclusion threshold ------
0.013 13.2 0.1 0.023 12.4 0.1 1.4 1 TIGR00336 pyrE: orotate phosphoribosyltransferase
Domain annotation for each model (and alignments):
>> TIGR01091 upp: uracil phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 276.1 0.3 7.2e-86 4e-83 3 207 .] 4 207 .] 2 207 .] 0.97
Alignments for each domain:
== domain 1 score: 276.1 bits; conditional E-value: 7.2e-86
TIGR01091 3 kviehpLikhkltvlRdketetkefrellkelgsllayeatkdleleevevetplgeakakelkdkkvvlvpiLrAglglvegvlkllpeakvglvgl 100
++i+hpLi +klt++R++et++k+fre l+e+++l++ye+ +dl+le ve+ tp++++++ + ++ vvlvpiLrAg+g+++g++kl+p+a++++vgl
MMSYN1_0798 4 TEIKHPLIIDKLTRMRKTETSSKDFRENLNEIAQLMVYEIFRDLKLEPVEITTPVAKTTG-YTINQPVVLVPILRAGIGMLDGIQKLIPTARIAHVGL 100
689*****************************************************9955.555678******************************* PP
TIGR01091 101 kRdeetlkievyysklpedieerevivlDPmlAtGgtvvealellkekgakkikvlsivaapeglekvekahpdveiyvaaidekLnekgYIvPGLGD 198
+Rdeetl+i+ y+ k +di+++ viv+DPmlAtGg++++a++++k+ gak++k++++va g+++++++hpdveiy a+ dekLnekgYIvPGLGD
MMSYN1_0798 101 YRDEETLEIHQYFAKTTKDIDKSYVIVVDPMLATGGSACKAIDIVKQWGAKEVKFVCLVAVEPGIKRLQEQHPDVEIYAASKDEKLNEKGYIVPGLGD 198
************************************************************************************************** PP
TIGR01091 199 aGDrafgtk 207
aGDr+fgtk
MMSYN1_0798 199 AGDRIFGTK 207
*******96 PP
>> TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.7 0.1 1.2e-10 7e-08 202 260 .. 114 170 .. 77 180 .. 0.84
Alignments for each domain:
== domain 1 score: 29.7 bits; conditional E-value: 1.2e-10
TIGR01251 202 tnllgdvegkdvvivDDiisTggTlvkaaelLkekGAkkvivaathgvfsgdAlerlae 260
+ + d++ v++vD +++Tgg+ +ka++++k+ GAk+v ++ +v ++ ++rl+e
MMSYN1_0798 114 AKTTKDIDKSYVIVVDPMLATGGSACKAIDIVKQWGAKEVKFVCLVAV--EPGIKRLQE 170
5778899999******************************99998775..666777666 PP
>> TIGR01090 apt: adenine phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.4 0.1 1.1e-08 6e-06 94 149 .. 101 162 .. 87 179 .. 0.78
Alignments for each domain:
== domain 1 score: 24.4 bits; conditional E-value: 1.1e-08
TIGR01090 94 Ygkd.kleihkdalk.....kgkrvlivDDllAtgGtveAaleLikklgaevveaaflielk 149
Y+++ +leih+ k +++ v++vD +lAtgG++ a++++k+ ga+ v+++ l+ ++
MMSYN1_0798 101 YRDEeTLEIHQYFAKttkdiDKSYVIVVDPMLATGGSACKAIDIVKQWGAKEVKFVCLVAVE 162
544448999987666455556778******************************99999775 PP
>> TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.6 0.0 1.2e-07 6.6e-05 107 144 .. 124 161 .. 88 182 .. 0.84
Alignments for each domain:
== domain 1 score: 20.6 bits; conditional E-value: 1.2e-07
TIGR01367 107 kvvvveDvvttGgsakeaikiieelGgqvvglaaiidr 144
v+vv+ +++tGgsa +ai i+++ G++ v + +++
MMSYN1_0798 124 YVIVVDPMLATGGSACKAIDIVKQWGAKEVKFVCLVAV 161
4899999***************************9865 PP
>> TIGR01744 XPRTase: xanthine phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.4 0.0 5.5e-07 0.00031 116 176 .. 121 179 .. 59 194 .. 0.85
Alignments for each domain:
== domain 1 score: 18.4 bits; conditional E-value: 5.5e-07
TIGR01744 116 dedrvliiddflanGdaarglvdivkqagakivGlGivieksfqnGreeleelglrvesla 176
d+ v+++d +la+G++a +divkq gak v + +++ + ++G ++l+e+ ve a
MMSYN1_0798 121 DKSYVIVVDPMLATGGSACKAIDIVKQWGAKEVKFVCLV--AVEPGIKRLQEQHPDVEIYA 179
55679**************************99887777..6899*****99987777655 PP
>> TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.2 0.0 5.9e-06 0.0033 23 123 .. 64 160 .. 53 175 .. 0.81
Alignments for each domain:
== domain 1 score: 15.2 bits; conditional E-value: 5.9e-06
TIGR01203 23 yagkkelvvvgvLkGsilFladliralkvpvkvdfiavsSYgnsvessgevkilkdldedikdkdvLlveDivdtgltlkellellkarkpkslkivt 120
y+ ++++v+v +L+ +i l + + + + +++ +v Y ++ e+ + + + +di v++v+ +++tg + + ++++k+ ++k++k v
MMSYN1_0798 64 YTINQPVVLVPILRAGIGMLDGIQKLIPT-ARIA--HVGLYRDE-ETLEIHQYFAKTTKDIDKSYVIVVDPMLATGGSACKAIDIVKQWGAKEVKFVC 157
66667799999999999877666555554.5554..55668877.66666677788999**************************************9 PP
TIGR01203 121 lle 123
l+
MMSYN1_0798 158 LVA 160
985 PP
>> TIGR00201 comF: comF family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.9 0.0 7.8e-06 0.0044 141 189 .. 111 159 .. 95 160 .. 0.88
Alignments for each domain:
== domain 1 score: 14.9 bits; conditional E-value: 7.8e-06
TIGR00201 141 nafklkvkevqgrkivlvDDvvttGatlaeiaklllklgaaevqvlsLa 189
f +k+++ +++vD ++ tG + + + +++ + ga+ev+ +L+
MMSYN1_0798 111 QYFAKTTKDIDKSYVIVVDPMLATGGSACKAIDIVKQWGAKEVKFVCLV 159
55667778899999*******************************9996 PP
>> TIGR00336 pyrE: orotate phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.4 0.1 4.1e-05 0.023 110 147 .. 124 161 .. 116 180 .. 0.83
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 4.1e-05
TIGR00336 110 kvvvveDvittGtsileaveaiqeagaevagvivvldr 147
v+vv+ +++tG+s+ +a+ ++++ ga+ ++ + ++
MMSYN1_0798 124 YVIVVDPMLATGGSACKAIDIVKQWGAKEVKFVCLVAV 161
599**********************9998887777654 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (207 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 199 (0.0443405); expected 89.8 (0.02)
Passed bias filter: 170 (0.0378788); expected 89.8 (0.02)
Passed Vit filter: 19 (0.00423351); expected 4.5 (0.001)
Passed Fwd filter: 8 (0.00178253); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1415.53
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0798 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0799 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0799.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0799/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0799 [L=413]
Description: glyA, transferase 3=Putative Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.2e-30 103.0 0.0 5.6e-30 102.6 0.0 1.2 1 TIGR04506 F_threo_transal: fluorothreonine transaldolase
8e-09 32.6 0.1 1.1e-08 32.1 0.1 1.3 1 TIGR00858 bioF: 8-amino-7-oxononanoate synthase
4.5e-08 30.4 0.1 6e-08 29.9 0.1 1.1 1 TIGR01822 2am3keto_CoA: glycine C-acetyltransferase
1.8e-06 25.1 0.0 0.00013 19.0 0.1 2.2 2 TIGR03588 PseC: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altr
8.4e-06 23.1 0.1 1.3e-05 22.4 0.1 1.4 1 TIGR03576 pyridox_MJ0158: pyridoxal phosphate enzyme, MJ0158
3.7e-05 20.7 0.3 6.1e-05 20.0 0.3 1.3 1 TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase
0.00013 19.0 0.0 0.00022 18.3 0.0 1.2 1 TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protei
0.0007 16.4 0.0 0.0012 15.6 0.0 1.3 1 TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypro
0.0009 16.4 0.0 0.0013 15.9 0.0 1.2 1 TIGR04427 PLP_DesI: dTDP-4-dehydro-6-deoxyglucose aminotrans
0.0019 14.8 0.0 0.0029 14.2 0.0 1.2 1 TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
0.0026 15.0 0.0 0.0062 13.8 0.0 1.6 2 TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protei
------ inclusion threshold ------
0.015 12.5 0.1 0.032 11.4 0.1 1.5 1 TIGR03275 methan_mark_8: putative methanogenesis marker prot
Domain annotation for each model (and alignments):
>> TIGR04506 F_threo_transal: fluorothreonine transaldolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 102.6 0.0 1.5e-32 5.6e-30 65 399 .. 58 403 .. 6 413 .] 0.78
Alignments for each domain:
== domain 1 score: 102.6 bits; conditional E-value: 1.5e-32
TIGR04506 65 llrgldrinaieesatevcrrlfgaeyaefrclsglhamqttfaalsqpgdkvmrvatkdgghfltelicrsfgrrsctyvy....ddlstidlertr 158
+ g + i+ ie + ++lf ae+a+++ sg a ++++ al +p d+v+ ++ ggh+ t f ++ + + +d+ ++d +
MMSYN1_0799 58 YYGGCEFIDEIESLGIKTAKELFNAEHANIQPHSGSQANDAAYKALLEPKDRVVAMSLDAGGHL-THGYHINFSGNTYDFRFygvnKDTEQLDYQEIE 154
688999*****************************************************99995.5555666766655543323337999******** PP
TIGR04506 159 evlererpsllyvdamnylfpfplaelkeiagdvp..lvfdashtlgliaggqfqdplaegadilqanthktlfgpqkgiilgkdrslmerigytl.. 252
+++ +p+l+ a y + ++++eia +v l+ d +h gl+a g +p+ e adi+ + thktl g + g+il k+ + +++ ++
MMSYN1_0799 155 KIILEHKPKLIVAGASAYSRIIDFKKFREIADKVGayLMVDMAHIAGLVAAGVHPNPM-EYADIVTTTTHKTLRGSRGGLILCKQE-FAKKVDSAVfp 250
*******************************99754499******************7.78*********************9975.45555555411 PP
TIGR04506 253 .sng.lvssqhtastlalfialhemyedgreyaarvvenarylaealkdrgvpvlaadrgftanhmffvdtrp.lgagpallerllra.nisvnrs.v 345
s+g + + t al+ a + +ey ++v+n++ la+ l++ g+ ++a g + nh++ vd ++ l +e++l++ +i +n+ +
MMSYN1_0799 251 gSQGgPLENLIAGKTQALLEASTDE---FKEYGKQIVKNTKALANVLQENGLRLVA---GGSDNHLINVDVKStLQITGKKAEKILESiGIICNKNmI 342
1443134444445566666555443...489************************9...7789*******9873666777788888643888887527 PP
TIGR04506 346 afeh.....ldtlrlgvqevtrrgydkadldeiadllaalllr..daeperiarrvaelva 399
f+ + +rlg +t rg+++++++++ ++ + l + +++ e++a++va l
MMSYN1_0799 343 PFDTekpfyTSGIRLGTPAMTTRGFKEEEFKQVGLIIVNALKDpsEENLEKLAKQVASLCE 403
7986223225689********************9988888764336788999999998865 PP
>> TIGR00858 bioF: 8-amino-7-oxononanoate synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.1 0.1 3e-11 1.1e-08 81 239 .. 83 242 .. 6 328 .. 0.72
Alignments for each domain:
== domain 1 score: 32.1 bits; conditional E-value: 3e-11
TIGR00858 81 teaallfssGylaNlgvisalvekedlvlsDklnH.AslidgarL..skakvlrykH....ndveale.rlLekerg.errklivtdgvFSmDGdvap 169
+ a + sG +aN ++ +al+e +d v++ l l++g ++ s+ ++ ++ +d+e+l+ + +ek ++ kliv+ + S +++
MMSYN1_0799 83 EHANIQPHSGSQANDAAYKALLEPKDRVVAMSLDAgGHLTHGYHInfSGN-TYDFRFygvnKDTEQLDyQEIEKIILeHKPKLIVAGA--SAYSRIID 177
33445568***************999999866543134667765511543.4444431111566666523455555457889999876..77789*** PP
TIGR00858 170 lkelvalaeryealllvDdAHgtGvlGedGrGlleefglkkeevdilvgTlsKal.gslGavvvgsealid 239
k+ ++a++ +a+l+vD AH G +++ G+ +++ di+++T K l gs G+++++++++++
MMSYN1_0799 178 FKKFREIADKVGAYLMVDMAHIAGLVAA---GVHP-NPME--YADIVTTTTHKTLrGSRGGLILCKQEFAK 242
**************************99...6544.4443..4589999999998799********99875 PP
>> TIGR01822 2am3keto_CoA: glycine C-acetyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.9 0.1 1.6e-10 6e-08 95 343 .. 79 331 .. 52 343 .. 0.74
Alignments for each domain:
== domain 1 score: 29.9 bits; conditional E-value: 1.6e-10
TIGR01822 95 flgteda.ilyascfdangGlfeallgeedaiisdalnha.siidGvrlc...kakryrye..nadledleaklkearaagarlrliatdGvfsmdGt 185
++ e a i s +an ++all ++d +++ +l+ + G + + +r+ n+d e+l+ + e + +li++ s
MMSYN1_0799 79 LFNAEHAnIQPHSGSQANDAAYKALLEPKDRVVAMSLDAGgHLTHGYHINfsgNTYDFRFYgvNKDTEQLDYQEIEKIILEHKPKLIVAG--ASAYSR 174
55556551455678899**************99987765413455655431113445565422667777776655544445677777764..356678 PP
TIGR01822 186 iapldeicalaekydalvlvdechatGflGatGrGsaelldvldkvdiitgtlGkalGGasGGfttakkevvellrqrsrpylfsnslapavvgasik 283
i ++++ +++a+k +a ++vd +h +G++ a G++ + ++ di+t+t k+l G+ GG +k+e + + p l + g + +
MMSYN1_0799 175 IIDFKKFREIADKVGAYLMVDMAHIAGLVAA---GVHP--NPMEYADIVTTTTHKTLRGSRGGLILCKQEFAKKVDSAVFPGSQGGPLENLIAGKTQA 267
99**************************976...6654..679999*************************999999999999889999888888888 PP
TIGR01822 284 vlell.easnelrdklventryfrekleaaGfdvkpa..ehaiipvmlyda.klaqklaerlle 343
le ++ +e +++v+nt+ + + l+ G+ + ++ ++ +i v + + +++ k ae++le
MMSYN1_0799 268 LLEAStDEFKEYGKQIVKNTKALANVLQENGLRLVAGgsDNHLINVDVKSTlQITGKKAEKILE 331
8886415567888999999999999999999987543114556666555432556666666665 PP
>> TIGR03588 PseC: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.0 0.1 3.4e-07 0.00013 93 200 .. 135 238 .. 79 246 .. 0.86
2 ? 3.9 0.0 0.013 4.8 289 340 .. 303 355 .. 270 371 .. 0.81
Alignments for each domain:
== domain 1 score: 19.0 bits; conditional E-value: 3.4e-07
TIGR03588 93 kvvfvdvdkkdgnldekalekklaaaekkkikvivpVdfa.GksvdleaiaalakkhglklieDasHalGaeykgkkvGkcryaditvfSFHpvKiit 189
+ f v+k++ ld +++ek++ +++ +k+iv+ a + +d+++ +++a+k g+ l+ D +H G ++ g + +yadi H K++
MMSYN1_0799 135 DFRFYGVNKDTEQLDYQEIEKIILEHK---PKLIVAGASAySRIIDFKKFREIADKVGAYLMVDMAHIAGLVAAGVHPNPMEYADIVTTTTH--KTLR 227
557899******************555...888887665526789*************************9999988888899999988888..8899 PP
TIGR03588 190 taEGGavttnd 200
+ GG+++ ++
MMSYN1_0799 228 GSRGGLILCKQ 238
99999988765 PP
== domain 2 score: 3.9 bits; conditional E-value: 0.013
TIGR03588 289 ksksalHLyvillkaelklerkevfealreagigvqvhYiPvh.lqplykklf 340
s +HL+ + +k +l+++ k+ + l++ gi+++ + iP + p+y++++
MMSYN1_0799 303 AGGSDNHLINVDVKSTLQITGKKAEKILESIGIICNKNMIPFDtEKPFYTSGI 355
456889***********************************972568888765 PP
>> TIGR03576 pyridox_MJ0158: pyridoxal phosphate enzyme, MJ0158 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.4 0.1 3.6e-08 1.3e-05 121 229 .. 149 249 .. 130 336 .. 0.76
Alignments for each domain:
== domain 1 score: 22.4 bits; conditional E-value: 3.6e-08
TIGR03576 121 eyeeseeleelkkidetslvvitGstmdlkvvseedlkkvietakekeaivlvDDasGarvrklynqkpalelGaDlvvtstDkLmeGPrgGllaGkk 218
+y+e e++ ++++ +++G+ ++++ +++++++ + +a +vD a a + + +++ +e+ aD+v t+t k + G rgGl+ k+
MMSYN1_0799 149 DYQEIEKII----LEHKPKLIVAGASAYSRIIDFKKFREIA---DKVGAYLMVDMAHIAGLVAAGVHPNPMEY-ADIVTTTTHKTLRGSRGGLILCKQ 238
455555444....3455556899*********999998887...678999******99999876666666665.9*********************** PP
TIGR03576 219 elvdkikseae 229
e+ k+ s +
MMSYN1_0799 239 EFAKKVDSAVF 249
*****988653 PP
>> TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.0 0.3 1.6e-07 6.1e-05 164 353 .. 151 335 .. 47 348 .. 0.70
Alignments for each domain:
== domain 1 score: 20.0 bits; conditional E-value: 1.6e-07
TIGR01821 164 aelekllesadkkaPkliaf.esvysmdGdiapikeicdladkygaltyldevhavGlyGprGaGiaerdgvmdridiieGtlakaf.GvlGGyiaas 259
+e + + +++Pkli+ s+ys i + k++ ++adk ga +d h Gl aG+ + + m+ di++ t k+ G+ GG i ++
MMSYN1_0799 151 QE---IEKIILEHKPKLIVAgASAYS---RIIDFKKFREIADKVGAYLMVDMAHIAGLV---AAGV--HPNPMEYADIVTTTTHKTLrGSRGGLILCK 237
22...223334578998754168888...699999********************9997...5788..5678*************9769********* PP
TIGR01821 260 aklidavrslapgfifttslpPavaagalasirhlkes..qklreaqqekvkklkklleelglPvlk..neshivPvliGdaak.akkvsdlllekyg 352
+++ v s l ++ag ++++ ++ ++ ++ +++k l ++l+e gl ++ ++ h++ v + + + + k ++ +le+ g
MMSYN1_0799 238 QEFAKKVDSAVFPGSQGGPLE-NLIAGKTQALLEASTDefKEYGKQIVKNTKALANVLQENGLRLVAggSDNHLINVDVKSTLQiTGKKAEKILESIG 334
**9998877543333334444.5667777776666665334444555689999*********999973356799999887664413455566666665 PP
TIGR01821 353 i 353
i
MMSYN1_0799 335 I 335
5 PP
>> TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.3 0.0 5.8e-07 0.00022 122 210 .. 145 235 .. 138 256 .. 0.77
Alignments for each domain:
== domain 1 score: 18.3 bits; conditional E-value: 5.8e-07
TIGR01977 122 eglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaGvleidveklai...dllaftGHKgLlgpqGiggl 210
+ ++d ++i+k i ++ ++++ aS i++ ++ e+a + g ++vD+a aG++ v+ + + d++ t HK+L g G l
MMSYN1_0799 145 TEQLDYQEIEKIILEHKPKLIVAGASAY-SRIIDFKKFREIADKVGAYLMVDMAHIAGLVAAGVHPNPMeyaDIVTTTTHKTLRGSRGGLIL 235
5678889999988776555556667765.57889**************************99998765522267899********9984444 PP
>> TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.6 0.0 3.2e-06 0.0012 76 217 .. 87 235 .. 78 251 .. 0.72
Alignments for each domain:
== domain 1 score: 15.6 bits; conditional E-value: 3.2e-06
TIGR01326 76 lavasGqaaillallnlaeaGdnivsssklYGGtynl.fkvtlkrlGievrf......vdkddleelekaidentkavfletignPkldvlDiekvae 166
+ sG a +a +l e d++v+ s GG + +++ + ++rf +++ d +e+ek+i e+ + + + +++D++k+ e
MMSYN1_0799 87 IQPHSGSQANDAAYKALLEPKDRVVAMSLDAGGHLTHgYHINFSGNTYDFRFygvnkdTEQLDYQEIEKIILEHKPKLIVAG-ASAYSRIIDFKKFRE 183
5667999999999999999999999999888887765366666666666666321111333346678888766554444433.455789********* PP
TIGR01326 167 vakkagvplivDnt.....vatpylvrPlehGadivvhsatkylgGhgtaigGviv 217
+a k g l+vD + va+++ +P+e+ adiv+ + k l G gG+i+
MMSYN1_0799 184 IADKVGAYLMVDMAhiaglVAAGVHPNPMEY-ADIVTTTTHKTLRGSR---GGLIL 235
************7633333667788899998.8*********999853...55555 PP
>> TIGR04427 PLP_DesI: dTDP-4-dehydro-6-deoxyglucose aminotransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.9 0.0 3.5e-06 0.0013 116 220 .. 138 243 .. 132 296 .. 0.88
Alignments for each domain:
== domain 1 score: 15.9 bits; conditional E-value: 3.5e-06
TIGR04427 116 fcdvdpetGlldpekvaaaitprtsaiv..GvhlwGrlaaveeleklaaehglklffdaahalGctadgrpvGsfGdaevfsfhatkvvnsfeGGavv 211
f v+ +t ld +++++ i ++ ++ G + r+ ++++++a++ g l+ d ah G a g + a++++ + k++++ GG +
MMSYN1_0799 138 FYGVNKDTEQLDYQEIEKIILEHKPKLIvaGASAYSRIIDFKKFREIADKVGAYLMVDMAHIAGLVAAGVHPNPMEYADIVTTTTHKTLRGSRGGLIL 235
6678999************9987654322499**************************************999********************99988 PP
TIGR04427 212 tddaelaer 220
+ e a++
MMSYN1_0799 236 CKQ-EFAKK 243
754.45555 PP
>> TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.2 0.0 7.8e-06 0.0029 76 225 .. 90 246 .. 75 264 .. 0.67
Alignments for each domain:
== domain 1 score: 14.2 bits; conditional E-value: 7.8e-06
TIGR01325 76 asGmaailaallallsaGdhvva......srslfGstvvlvsei..lkrfGvevsfvdatdlkaWeaalkantkllfletPsnPlaelvdiaalaela 165
sG a aa all+ d+vva + G + + + ++ +Gv+ + ++ d ++ e+ + l++ + + ++d + e+a
MMSYN1_0799 90 HSGSQANDAAYKALLEPKDRVVAmsldagGHLTHGYHINFSGNTydFRFYGVNKDT-EQLDYQEIEKIILEHKPKLIVAG-ASAYSRIIDFKKFREIA 185
46777777777777777777776222211122344455555443224456777664.45567777776655544455544.446789*********** PP
TIGR01325 166 havGaklvvdnvfatPvlqqplk....lGadvvvysatkaidGqGrvlGGvilgseelieevak 225
vGa l+vd + ++ ++ +++ ad+v ++ k + G GG il ++e+ ++v +
MMSYN1_0799 186 DKVGAYLMVDMAHIAGLVAAGVHpnpmEYADIVTTTTHKTLRGS---RGGLILCKQEFAKKVDS 246
**********98877666554431111249****9999999995...599******99998765 PP
>> TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.0 0.61 2.3e+02 146 166 .. 95 115 .. 84 122 .. 0.81
2 ! 13.8 0.0 1.6e-05 0.0062 104 250 .. 105 255 .. 95 283 .. 0.72
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 0.61
TIGR01976 146 leeadlaallsdrTRLVAvta 166
+ a+++all ++ R VA+
MMSYN1_0799 95 ANDAAYKALLEPKDRVVAMSL 115
5678899***********875 PP
== domain 2 score: 13.8 bits; conditional E-value: 1.6e-05
TIGR01976 104 gpgdEvivtrldheaNisp.Wlqaaedagakvkwaevdeadgeleeadlaall.sdrTRLVAvtaasnllGsivdlaaltelvhaaGalvvvDavhya 199
+p+d v+ +ld + + + +++++ v++++ +l+ ++++ ++ ++ +L+ v as i d + e++ ++Ga ++vD+ h a
MMSYN1_0799 105 EPKDRVVAMSLDAGGHLTHgYHINFSGNTYDFRFYGVNKDTEQLDYQEIEKIIlEHKPKLI-VAGAS-AYSRIIDFKKFREIADKVGAYLMVDMAHIA 200
566666666666666655413334445667899999*************997625666776.44444.456899************************ PP
TIGR01976 200 phaliDvqal...gaDllvcsaykff.gPhlGilvvraellkslkpsklefsede 250
v+ aD+++ ++k + g G++ ++e k++ + s+ +
MMSYN1_0799 201 GLVAAGVHPNpmeYADIVTTTTHKTLrGSRGGLILCKQEFAKKVDSAVFPGSQGG 255
9999999754222699*******98734555555667777777666655555555 PP
>> TIGR03275 methan_mark_8: putative methanogenesis marker protein 8
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.4 0.1 8.5e-05 0.032 172 230 .. 174 233 .. 139 248 .. 0.72
Alignments for each domain:
== domain 1 score: 11.4 bits; conditional E-value: 8.5e-05
TIGR03275 172 daedakeirelekeldldvliiavhvtGideedae.elvkyaDivtsCaskairelakkk 230
d k+ re+ +++ +++ +h++G+ + + + ++yaDivt+ k++r + +
MMSYN1_0799 174 RIIDFKKFREIADKVGAYLMVDMAHIAGLVAAGVHpNPMEYADIVTTTTHKTLRGSRGGL 233
3457899*********************99988763789**************9877655 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (413 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 264 (0.0588235); expected 89.8 (0.02)
Passed bias filter: 197 (0.0438948); expected 89.8 (0.02)
Passed Vit filter: 29 (0.00646168); expected 4.5 (0.001)
Passed Fwd filter: 12 (0.0026738); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 12 [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.23
# Mc/sec: 2578.63
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0799 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0800 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0800.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0800/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0800 [L=147]
Description: rpiB: ribose 5-phosphate isomerase B 5=Equivalog Metabolic process
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.4e-51 170.3 3.1 6e-51 170.1 3.1 1.0 1 TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/La
3.6e-45 151.4 2.4 4.1e-45 151.2 2.4 1.0 1 TIGR01120 rpiB: ribose 5-phosphate isomerase B
1.6e-42 142.8 2.7 1.8e-42 142.7 2.7 1.0 1 TIGR02133 RPI_actino: ribose 5-phosphate isomerase
2.1e-26 90.6 1.7 2.5e-26 90.3 1.7 1.0 1 TIGR01119 lacB: galactose-6-phosphate isomerase, LacB subuni
5.4e-23 79.7 2.6 6.3e-23 79.4 2.6 1.0 1 TIGR01118 lacA: galactose-6-phosphate isomerase, LacA subuni
0.0059 13.2 0.1 0.0069 13.0 0.1 1.0 1 TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subun
Domain annotation for each model (and alignments):
>> TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 170.1 3.1 8e-54 6e-51 1 143 [. 5 146 .. 5 147 .] 0.99
Alignments for each domain:
== domain 1 score: 170.1 bits; conditional E-value: 8e-54
TIGR00689 1 iaiasDHaGlelkekikefleekkleviDlgtleldesvdYPdyakkvaekvveneaslGilicgtGiGvsiaAnkvkgiraalvvdektAklareHn 98
i+i+ DH+ +e+k+ i+++l+ek++eviDlg ++ +s +Y + + vae+vv++++s+Gi+icgtGiG+siaAnkvk +raalv ++ tA+lar Hn
MMSYN1_0800 5 IYIGNDHSAVEMKQAIVKHLQEKNYEVIDLGNND-GKSCNYAKIGQVVAEHVVSDTNSRGIVICGTGIGISIAANKVKTARAALVYEKETAELARIHN 101
89********************************.99************************************************************* PP
TIGR00689 99 danvlalgervvgvelalkivdaflttefeggRHqkRiekiseye 143
dan+lalg+r++ ++ a+++vd fl+t+feggRH +R++ ++ey+
MMSYN1_0800 102 DANILALGARIIAISKAINLVDVFLNTPFEGGRHIERVNTLNEYK 146
******************************************996 PP
>> TIGR01120 rpiB: ribose 5-phosphate isomerase B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 151.2 2.4 5.4e-48 4.1e-45 1 141 [. 4 144 .. 4 146 .. 0.99
Alignments for each domain:
== domain 1 score: 151.2 bits; conditional E-value: 5.4e-48
TIGR01120 1 kiaiGsdhaGlilkekikeflkekgvkvidvgtlasertdypdyakevvravaegeaerGilicgtGiGlsiaankfkGiraalcseeymaklsrlhn 98
+i+iG dh +++k+ i+++l+ek+++vid g ++ +y + + v++ v ++ ++rGi+icgtGiG+siaank k raal e+ +a+l+r+hn
MMSYN1_0800 4 RIYIGNDHSAVEMKQAIVKHLQEKNYEVIDLGNNDGKSCNYAKIGQVVAEHVVSDTNSRGIVICGTGIGISIAANKVKTARAALVYEKETAELARIHN 101
699*********************************************************************************************** PP
TIGR01120 99 danvlalGervvGvelaksiveafletefegGrhlkrvekide 141
dan+lalG r++ + a +v++fl+t+fegGrh++rv++++e
MMSYN1_0800 102 DANILALGARIIAISKAINLVDVFLNTPFEGGRHIERVNTLNE 144
***************************************9987 PP
>> TIGR02133 RPI_actino: ribose 5-phosphate isomerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 142.7 2.7 2.4e-45 1.8e-42 2 146 .. 4 146 .. 3 147 .] 0.97
Alignments for each domain:
== domain 1 score: 142.7 bits; conditional E-value: 2.4e-45
TIGR02133 2 rvvlgsDdaGfelkealkedLkaedaevvdvGveiaDeeddYPkvaiaaaekvardeadlalvigGsGnGeqiaankvkGiraalawdeetaelarls 99
r+++g D++ e+k+a++++L+++++ev+d G + ++ +Y k+ ae+v+ d++++++vi+G+G G iaankvk +raal +++etaelar +
MMSYN1_0800 4 RIYIGNDHSAVEMKQAIVKHLQEKNYEVIDLGNN-DGKSCNYAKIGQVVAEHVVSDTNSRGIVICGTGIGISIAANKVKTARAALVYEKETAELARIH 100
9*******************************99.556789********************************************************* PP
TIGR02133 100 nnanvlaiGarvvgleearrlveefLeeefsedsrsarridalsaYe 146
n+an+la+Gar+ + +a +lv+ fL+++f++ r+++r+++l +Y
MMSYN1_0800 101 NDANILALGARIIAISKAINLVDVFLNTPFEG-GRHIERVNTLNEYK 146
******************************86.69*********996 PP
>> TIGR01119 lacB: galactose-6-phosphate isomerase, LacB subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 90.3 1.7 3.4e-29 2.5e-26 2 129 .. 4 131 .. 3 143 .. 0.96
Alignments for each domain:
== domain 1 score: 90.3 bits; conditional E-value: 3.4e-29
TIGR01119 2 kiaigcdhivtdvkmevseflkskgyevldvgtydftrthypifgkkvgeavvsgeadlgvcicgtgvginnavnkvpgvrsalvrdmtsalyakeel 99
+i ig dh ++k ++ ++l++k yev+d+g d y g+ v e vvs g++icgtg+gi+ a+nkv r+alv + +a a+
MMSYN1_0800 4 RIYIGNDHSAVEMKQAIVKHLQEKNYEVIDLGNNDGKSCNYAKIGQVVAEHVVSDTNSRGIVICGTGIGISIAANKVKTARAALVYEKETAELARIHN 101
799*********************************************************************************************** PP
TIGR01119 100 nanvigfggaiigelllldiidafieaeyk 129
+an++++g +ii ++++d f+++ +
MMSYN1_0800 102 DANILALGARIIAISKAINLVDVFLNTPFE 131
*************************98765 PP
>> TIGR01118 lacA: galactose-6-phosphate isomerase, LacA subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 79.4 2.6 8.5e-26 6.3e-23 3 140 .. 5 144 .. 3 145 .. 0.95
Alignments for each domain:
== domain 1 score: 79.4 bits; conditional E-value: 8.5e-26
TIGR01118 3 iiigsdeagkrlkdviksflvdnkyevvdvterk..eldfvdatlavakevqkdeknlgividaygagsfmvatkikgmiaaevsdersaymtrghnn 98
i ig d++ +k+ i ++l++++yev+d+ +++ ++ va++v +d + givi g g + a k+k aa v ++ +a ++r hn+
MMSYN1_0800 5 IYIGNDHSAVEMKQAIVKHLQEKNYEVIDLGNNDgkSCNYAKIGQVVAEHVVSDTNSRGIVICGTGIGISIAANKVKTARAALVYEKETAELARIHND 102
789**************************98765115678899999**************************************************** PP
TIGR01118 99 arlitlgaeivgdelaknivkafvegkydggrhqirvdmlnk 140
a +++lga i+ a n+v f+++ ++ggrh rv+ ln
MMSYN1_0800 103 ANILALGARIIAISKAINLVDVFLNTPFEGGRHIERVNTLNE 144
***************************************996 PP
>> TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.0 0.1 9.2e-06 0.0069 168 263 .. 15 113 .. 3 129 .. 0.69
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 9.2e-06
TIGR02963 168 aereaiveeLkalraketaeleskeerviaPttl.delaa.lkaaePkarlvaGstdvglwvtkkl..relekliyvgqvaelkrieeteeaieigAa 261
+ ++aiv++L++ + +e ++l +++ + + +++ + +a+ + +++ + +v+ +t +g+ + ++ + l+y + ael ri+++++ + +gA
MMSYN1_0800 15 EMKQAIVKHLQEKN-YEVIDLGNNDGKSCNYAKIgQVVAEhVVSDTNSRGIVICGTGIGISIAANKvkTARAALVYEKETAELARIHNDANILALGAR 111
44566778887655.6667776666555444444044443256666677799*******9987554005567899**********************8 PP
TIGR02963 262 vs 263
+
MMSYN1_0800 112 II 113
64 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (147 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 282 (0.0628342); expected 89.8 (0.02)
Passed bias filter: 126 (0.0280749); expected 89.8 (0.02)
Passed Vit filter: 15 (0.00334225); expected 4.5 (0.001)
Passed Fwd filter: 6 (0.0013369); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1111.04
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0800 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0803 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0803.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0803/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0803 [L=1255]
Description: rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 5=Equivalog Transcription
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0 1813.4 17.3 0 1813.2 17.3 1.0 1 TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subu
1.5e-202 672.5 3.8 6.7e-156 518.4 0.4 2.4 2 TIGR02387 rpoC1_cyan: DNA-directed RNA polymerase, gamma sub
2.9e-170 566.2 16.5 4.7e-117 389.9 2.8 3.0 3 TIGR02388 rpoC2_cyan: DNA-directed RNA polymerase, beta'' su
7.3e-87 290.3 13.3 8.7e-45 151.1 2.3 5.2 3 TIGR02390 RNA_pol_rpoA1: DNA-directed RNA polymerase subunit
7e-27 92.3 9.6 8e-18 62.5 0.1 3.9 4 TIGR02389 RNA_pol_rpoA2: DNA-directed RNA polymerase, subuni
Domain annotation for each model (and alignments):
>> TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1813.2 17.3 0 0 1 1146 [. 9 1241 .. 9 1242 .. 0.97
Alignments for each domain:
== domain 1 score: 1813.2 bits; conditional E-value: 0
TIGR02386 1 kikiklaspekireWskGevkkpetinyrtlkpekdGlfcekifGptkdyeClCGkykkvk..ykGvvCerCgvevteskvrrermghielaaPva 94
+iki+la+p++ir+Ws+Gev kpetiny+tlk+ekdGlf+e+ifGptk+yeC+CG+ykk++ +kG++Ce+Cgve+tes+vrrermghiel++Pv+
MMSYN1_0803 9 AIKIELANPDTIRSWSHGEVLKPETINYKTLKAEKDGLFDERIFGPTKNYECVCGRYKKANpmNKGKKCEKCGVELTESIVRRERMGHIELEEPVT 104
59**********************************************************9889******************************** PP
TIGR02386 95 hiWylkevPsriglllditakelekvlyfekyvvvdegetkl.ekkevldeee.........................................yk 148
hiW+lk +P+ri+++ld++akele+v+yf++++v+++g++k+ +kevld +
MMSYN1_0803 105 HIWMLKVAPYRIAAILDLKAKELEEVVYFVSHIVLEQGNQKHfIEKEVLDLGSsritktreklqltildvidlindpnhrdtkkanrlleelknT- 199
**************************************987625799999999899999999999999999999999988888888854444440. PP
TIGR02386 149 evleeyg...............dkfkakiGaeaikellekidlekeaeklkeelkeak.ekqkrkkllkrlevleafkesgnkPewmvleviPviP 228
+ +++k++iGa+a++ llek+dl+ke+e++k +l+++k + ++r+kllkrle+++a+k+s+++Pewmv++viPviP
MMSYN1_0803 200 ------AvpfsideatsliskyTGAKFGIGARAVEYLLEKVDLKKEIEAIKVQLENSKkTPNERTKLLKRLETFDALKRSNQRPEWMVMRVIPVIP 289
......3566666666777788999*******************************98578999******************************** PP
TIGR02386 229 pelrPlvqldggrfatsdlndlyrrvinrnnrlkrllelkaPeiivrnekrllqeavdalfdngrrkkpvkgknkrplkslsdmlkGkqGrfrqnl 324
p++rP++qldggrf+ts++ndlyrr+i+rn+rlk+++e++aP+iiv+nekr+lqeavdalfdn+r+ kpv+gknkrplksl+++lkGkqG frqnl
MMSYN1_0803 290 PDIRPIIQLDGGRFTTSEINDLYRRIIIRNERLKKVKEMGAPSIIVNNEKRMLQEAVDALFDNERKPKPVQGKNKRPLKSLTSVLKGKQGCFRQNL 385
************************************************************************************************ PP
TIGR02386 325 lGkrvdysgrsvivvGPelklyqvGlPkkmalelfkPfiikrlvekelaaniksakkliereddevwdvleevikerPvllnraPtlhrlgiqafe 420
lGkrvdys+rsvi +GP+lk+yq+GlP++ma++lfkPf+i++l+++e+a+n+k+a+k++ ++d++vw+ le+vik+rPvllnraPtlhrlgiqafe
MMSYN1_0803 386 LGKRVDYSARSVIAIGPDLKMYQAGLPREMAITLFKPFVIQWLQDHEYAENVKIAEKMLLQNDPKVWEALEQVIKDRPVLLNRAPTLHRLGIQAFE 481
************************************************************************************************ PP
TIGR02386 421 PklveGkairlhPlvcaafnadfdGdqmavhvplskeaqaearvlllasknilnpkdGkpivvPsqdivlGlyyltkekkeekgegkkifsdleev 516
Pklv+GkairlhPlv++afnadfdGdqmavhvp++kea+ae+r+l+l+s++il+pkdGk+iv+P+qdi+lG+yylt+e+k +kg+g +ifs+l+e+
MMSYN1_0803 482 PKLVKGKAIRLHPLVTTAFNADFDGDQMAVHVPITKEAVAESRALMLGSSAILGPKDGKAIVTPGQDIILGNYYLTTEEKYAKGQG-MIFSSLDEA 576
**************************************************************************************.9******** PP
TIGR02386 517 ilayengkvelnakikvklkal..kkfske....gellettvGrvifneilpeelpyinks................................lsk 574
++ay++++ +ln+ i+++l+al +kfs++ +++l ttvG+++fn+i+++++p+in++ ++k
MMSYN1_0803 577 FMAYKSNQADLNSLIGIALSALpeQKFSDKnqrlNSYLLTTVGKLYFNQIFDDNFPWINSNniwnakeavkefiydfsqdidkvienvqvqqpIKK 672
**********************9999999877788899********************************************************** PP
TIGR02386 575 keiselieklykklgikevaelldkikelGfkyatkagvtvsiedivvpdekkeilkeadkkvekvkkeyekGllteeerkkkvveiWsevkdkvt 670
ke+s +ie++++++g++++ae+ldk+k+lGf+++tk+g+t+s+ d+v++++k++ +k+ad+kve+++++y++G+lt++e+k++++e+Ws+vkdk++
MMSYN1_0803 673 KELSLIIERYFETHGARKTAEMLDKMKDLGFSFSTKSGTTISAGDVVAFTHKYDEFKQADQKVEQITDFYNMGMLTNSEKKRRIIEVWSDVKDKIQ 768
************************************************************************************************ PP
TIGR02386 671 delakllkkdkkkknpifvmadsGarGnasqlrqlagmrGlmakpkgeiielpikssfreGlsvleyfisthGarkGladtalktadsGyltrrlv 766
+ela++l+kd knpifvm+dsGarGn+s+++ql+gmrGlm+++kg+i+e+pikssfreGl+v+eyf+sthGarkG+ad+alktadsGyltrrlv
MMSYN1_0803 769 NELATVLRKD--VKNPIFVMVDSGARGNVSNFTQLVGMRGLMNDTKGDIKEIPIKSSFREGLTVSEYFVSTHGARKGMADIALKTADSGYLTRRLV 862
********99..99********************************************************************************** PP
TIGR02386 767 dvaqdvvvkeedCgteegieveaiveged.evieslkdrvvgrvsaedvvdpekdklvveaneliteelaekieelgiekvkvrsvltCeskkGvC 861
dv+q++vv++edC+ ++g+ev+ai+++++ +vi++lkdr+vgr+++ed++d++k +l+v+an+li++++a+ki ++gi++v +rsvltC++k+GvC
MMSYN1_0803 863 DVSQEIVVVNEDCEPTKGFEVSAIIDTKHdNVIVPLKDRLVGRFTFEDIYDDNK-NLIVSANTLIDKNIADKIIMAGISSVIIRSVLTCDNKRGVC 957
****************************999********************866.9**************************************** PP
TIGR02386 862 qkCyGldlatgklveiGeavGviaaqsiGePGtqltmrtfhtGGvasasdditqGlprvkelfearkPkd.aaviaevdGvveikeekkkekrvvv 956
qkCyGl+lat++ v+iGe+vGviaaqsiGePGtqltmr+fhtGGva++ ditqGlpr+kel+++++Pk+ +a i+evdGvv+ + e+ ++ v++
MMSYN1_0803 958 QKCYGLNLATASVVNIGEPVGVIAAQSIGEPGTQLTMRNFHTGGVAGNV-DITQGLPRIKELLDVTTPKGaVAIISEVDGVVSEI-EDYNGVFVIN 1051
************************************************7.*******************9899************.69******** PP
TIGR02386 957 ikdekeeekeyliplgkqlrvkeGdkvsaGdklteGsidpkdllrvkgieavqeylvkevqkvyrlqGveindkhievivrqllrkvkitdsGdss 1052
i +e+ee k+y+++++++lrv++G++v+aG+klteG+id+++ll++ gi++vq+y++kevqkvyrlqG+ei+dk+ie+i++q+l+kvkitdsGds+
MMSYN1_0803 1052 IVTENEEVKKYKTEFNSVLRVEQGSSVVAGQKLTEGAIDLHQLLEFGGIQDVQNYILKEVQKVYRLQGIEISDKYIEIIIKQMLNKVKITDSGDSD 1147
************************************************************************************************ PP
TIGR02386 1053 llvgekvdkkefeeenkkvlaegkkpakakpvllGitkasletesflsaasfqettkvltdaaikgkkdkllGlkenvilGkliPaGtGlkkyk 1146
ll+ge++++++ +e+++++++++ +p+ +k++++Gi+ka+le++s+ls+asfq+t++vlt+a+ikgk+dkl+Glken++lG+liPaGtGl+ ++
MMSYN1_0803 1148 LLPGEVITIQNCKEVVQDCIVKSIRPPLSKAQIFGIKKAPLESSSWLSSASFQDTARVLTRAIIKGKEDKLEGLKENIMLGNLIPAGTGLTGTQ 1241
******************************************************************************************9766 PP
>> TIGR02387 rpoC1_cyan: DNA-directed RNA polymerase, gamma subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 154.7 0.2 9.2e-49 8.3e-46 5 155 .. 10 153 .. 6 157 .. 0.94
2 ! 518.4 0.4 7.5e-159 6.7e-156 142 555 .. 180 596 .. 162 624 .. 0.92
Alignments for each domain:
== domain 1 score: 154.7 bits; conditional E-value: 9.2e-49
TIGR02387 5 vkiaiaspervmewgqrtlpngqvvgevtkpetinyrtlkpemdglfcekifgpskdwecycgkykrvr..hrgivcercgvevtesrvrrhrmgyik 100
+ki +a p+ +++w + gev kpetiny+tlk e dglf e+ifgp+k++ec cg+yk+ +g ce+cgve+tes vrr rmg+i
MMSYN1_0803 10 IKIELANPDTIRSWSH---------GEVLKPETINYKTLKAEKDGLFDERIFGPTKNYECVCGRYKKANpmNKGKKCEKCGVELTESIVRRERMGHIE 98
8999999999999975.........9****************************************9864489************************* PP
TIGR02387 101 laapvthvwylkgipsyvsilldmalrdveqivyfnayvvlnpgnaeelkykqll 155
l pvth+w lk p ++ +ld+ +++e++vyf +++vl+ gn++++ k++l
MMSYN1_0803 99 LEEPVTHIWMLKVAPYRIAAILDLKAKELEEVVYFVSHIVLEQGNQKHFIEKEVL 153
***********************************************99888776 PP
== domain 2 score: 518.4 bits; conditional E-value: 7.5e-159
TIGR02387 142 npgnaeelkykqlltedqyleiedqiyaedselelee..vvgigaealkellaeleleevaeklreeileskg..qkraklikrlrvidnfiatssra 235
+p + + k ++ll e + + i s + + giga a++ ll++++l+++ e ++ ++++sk + r+kl+krl +d + ++ r+
MMSYN1_0803 180 DPNHRDTKKANRLLEELKNTAVPFSIDEATSLISKYTgaKFGIGARAVEYLLEKVDLKKEIEAIKVQLENSKKtpNERTKLLKRLETFDALKRSNQRP 277
444444455666777777777777766666666655433579****************************9963369********************* PP
TIGR02387 236 ewmvldvipvippdlrpmvqldggrfatsdlndlyrrvinrnnrlarlqeilapeiivrnekrmlqeavdalidngrrgrtvvgannralkslsdiie 333
ewmv+ vipvippd+rp++qldggrf+ts++ndlyrr+i rn+rl +++e+ ap iiv nekrmlqeavdal dn r+ + v g n+r+lksl+ +++
MMSYN1_0803 278 EWMVMRVIPVIPPDIRPIIQLDGGRFTTSEINDLYRRIIIRNERLKKVKEMGAPSIIVNNEKRMLQEAVDALFDNERKPKPVQGKNKRPLKSLTSVLK 375
************************************************************************************************** PP
TIGR02387 334 gkqgrfrqnllgkrvdysgrsvivvgpklklyqcglpkemaielfqpfvihrlikrgivnnikaakkliqradaeilsvleevitghpvllnraptlh 431
gkqg frqnllgkrvdys rsvi +gp+lk+yq+glp+emai lf+pfvi+ l ++ +n+k a k+++++d+++++ le+vi+ pvllnraptlh
MMSYN1_0803 376 GKQGCFRQNLLGKRVDYSARSVIAIGPDLKMYQAGLPREMAITLFKPFVIQWLQDHEYAENVKIAEKMLLQNDPKVWEALEQVIKDRPVLLNRAPTLH 473
************************************************************************************************** PP
TIGR02387 432 rlgiqafepilvegraiqlhplvcpafnadfdgdqmavhvplsleaqaearllmlasnnvlspatgkpivtpsqdmvlgsyyltaenpdaekgagryf 529
rlgiqafep+lv+g+ai+lhplv +afnadfdgdqmavhvp++ ea ae+r lml s +l p gk ivtp qd++lg yylt+e+ a kg+g f
MMSYN1_0803 474 RLGIQAFEPKLVKGKAIRLHPLVTTAFNADFDGDQMAVHVPITKEAVAESRALMLGSSAILGPKDGKAIVTPGQDIILGNYYLTTEEKYA-KGQGMIF 570
*************************************************************************************98776.79***** PP
TIGR02387 530 asledavrayedgridlhakiwvrle 555
+sl++a +ay++++ dl + i + l
MMSYN1_0803 571 SSLDEAFMAYKSNQADLNSLIGIALS 596
*******************9998775 PP
>> TIGR02388 rpoC2_cyan: DNA-directed RNA polymerase, beta'' subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.2 0.0 0.25 2.3e+02 665 692 .. 305 332 .. 295 350 .. 0.71
2 ! 389.9 2.8 5.2e-120 4.7e-117 6 338 .. 669 1003 .. 664 1006 .. 0.97
3 ! 183.5 3.1 1.1e-57 9.9e-55 979 1229 .. 1007 1241 .. 1003 1242 .. 0.93
Alignments for each domain:
== domain 1 score: -3.2 bits; conditional E-value: 0.25
TIGR02388 665 vvqkndilreiivkpGelyevddpeavk 692
+ nd+ r ii+++ l +v++ +a +
MMSYN1_0803 305 TSEINDLYRRIIIRNERLKKVKEMGAPS 332
56679************99998866533 PP
== domain 2 score: 389.9 bits; conditional E-value: 5.2e-120
TIGR02388 6 vvdkkalknliawaykkyGtartaeladklkdlGfkyatragvsisvddllvppekkelleaaekeirateeryrrGeiteverfqkvidtwnets 101
+ kk+l +i ++++G+ +tae+ dk+kdlGf ++t++g +is d++ +k + +++a+++++ + y+ G +t+ e+ +++i+ w++ +
MMSYN1_0803 669 PIKKKELSLIIERYFETHGARKTAEMLDKMKDLGFSFSTKSGTTISAGDVVAFTHKYDEFKQADQKVEQITDFYNMGMLTNSEKKRRIIEVWSDVK 764
5899******************************************************************************************** PP
TIGR02388 102 eelkdevvtnfrktdplnsvymmafsGarGnlsqvrqlvGmrGlmadpqGeiidlpiktnfreGltvteyvissyGarkGlvdtalrtadsGyltr 197
+++++e+ t +rk d+ n +++m sGarGn+s+ qlvGmrGlm d +G+i ++pik+ freGltv+ey +s++GarkG+ d al+tadsGyltr
MMSYN1_0803 765 DKIQNELATVLRK-DVKNPIFVMVDSGARGNVSNFTQLVGMRGLMNDTKGDIKEIPIKSSFREGLTVSEYFVSTHGARKGMADIALKTADSGYLTR 859
*******999876.99******************************************************************************** PP
TIGR02388 198 rlvdvsqdvivreedcgtersivvram..tegdk.likladrllGrlvaedvldpegevivkkntaidedlakkiekagieevvvrspltceaars 290
rlvdvsq+++v +edc+ +++ +v a+ t+ d+ ++ l+drl+Gr + ed+ d ++++iv+ nt id+++a+ki agi+ v++rs ltc+ +r
MMSYN1_0803 860 RLVDVSQEIVVVNEDCEPTKGFEVSAIidTKHDNvIVPLKDRLVGRFTFEDIYDDNKNLIVSANTLIDKNIADKIIMAGISSVIIRSVLTCDNKRG 955
*************************9833445555789********************************************************** PP
TIGR02388 291 vcrkcyGwslahaklvdlGeavGiiaaqsiGepGtqltmrtfhtGGvf 338
vc+kcyG la a +v++Ge vG+iaaqsiGepGtqltmr fhtGGv
MMSYN1_0803 956 VCQKCYGLNLATASVVNIGEPVGVIAAQSIGEPGTQLTMRNFHTGGVA 1003
**********************************************96 PP
== domain 3 score: 183.5 bits; conditional E-value: 1.1e-57
TIGR02388 979 divqGlprieellearkpkea.cvlakksGvvqvkygeddesveikvieedgtvseypllpGqnllvsdGqkvdvgealtdGpvnphdildvffsy 1073
di qGlpri+ell+ pk a +++++ Gvv + + i+++ e++ v++y+ l v +G+ v +g++lt+G ++ h++l+
MMSYN1_0803 1007 DITQGLPRIKELLDVTTPKGAvAIISEVDGVVSEIEDY-NGVFVINIVTENEEVKKYKTEFNSVLRVEQGSSVVAGQKLTEGAIDLHQLLEF---- 1097
9******************9835777788887644433.677889********************************************984.... PP
TIGR02388 1074 lkdkdglleaaqeslekvqkflvnevqsvyksqGvdiadkhievivrqmtskvriddaGdttllpGelvelrqveqvneamaitGgapaqytpvll 1169
+++ vq++++ evq+vy+ qG++i+dk+ie+i++qm +kv+i d+Gd+ llpGe++++++ ++v + + p ++
MMSYN1_0803 1098 ------------GGIQDVQNYILKEVQKVYRLQGIEISDKYIEIIIKQMLNKVKITDSGDSDLLPGEVITIQNCKEVVQDCIVKSIRPPLSKAQIF 1181
............36889**************************************************************999999999999999** PP
TIGR02388 1170 GitkaslntdsfisaasfqettrvlteaaieGksdwlrGlkenviiGrlipaGtGfssye 1229
Gi ka l++ s++s+asfq+t+rvlt a i+Gk d l Glken+++G lipaGtG ++ +
MMSYN1_0803 1182 GIKKAPLESSSWLSSASFQDTARVLTRAIIKGKEDKLEGLKENIMLGNLIPAGTGLTGTQ 1241
*******************************************************98766 PP
>> TIGR02390 RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.6 0.0 0.00011 0.1 5 86 .. 8 110 .. 4 126 .. 0.70
2 ! 129.1 1.5 4.2e-41 3.8e-38 170 351 .. 249 425 .. 225 461 .. 0.84
3 ! 151.1 2.3 9.7e-48 8.7e-45 407 830 .. 457 873 .. 438 899 .. 0.76
Alignments for each domain:
== domain 1 score: 8.6 bits; conditional E-value: 0.00011
TIGR02390 5 ksikfgllsPeeirklsvvevvtadtydedGlPie.gGlmdprl........Gv.........iePglrCktCggkvdeCp...GhfGkielarPvvh 81
k ik+ l +P++ir s+ ev +++t + l e Gl d+r+ v ++ g++C+ Cg + e +G+iel +Pv h
MMSYN1_0803 8 KAIKIELANPDTIRSWSHGEVLKPETINYKTLKAEkDGLFDERIfgptknyeCVcgrykkanpMNKGKKCEKCGVELTESIvrrERMGHIELEEPVTH 105
67899999999999999999999999888887765258888775433222221122222222245699******9998875222689*********** PP
TIGR02390 82 vgfak 86
+ k
MMSYN1_0803 106 IWMLK 110
97766 PP
== domain 2 score: 129.1 bits; conditional E-value: 4.2e-41
TIGR02390 170 kvkltpsevrerlekipdedlkllGinpkvarPewlvltvlpvPPvtvrPsitletGerseddlthklvdiirinerlkesieagaPeliiedlWell 267
+ k tp+e + l+++ d ++ ++ rPew+v++v+pv P +rP i+l+ G+ + ++ ii nerlk++ e+gaP i+++ +l
MMSYN1_0803 249 NSKKTPNERTKLLKRLETFD----ALKRSNQRPEWMVMRVIPVIPPDIRPIIQLDGGRFTTSEINDLYRRIIIRNERLKKVKEMGAPSIIVNNEKRML 342
44556666666666665433....4677889***************************9999999999999999************************ PP
TIGR02390 268 qyhvatyfdnelpgipkarhrsgrplktlaqrlkGkeGrlrsnlsGkrvnfsartvispdPrisinevGvPeeiakeltvperv 351
q+ v + fdne ++++ +++rplk+l+ lkGk+G +r+nl Gkrv++sar+vi+ P + + + G+P+e+a +l p ++
MMSYN1_0803 343 QEAVDALFDNERKP-KPVQGKNKRPLKSLTSVLKGKQGCFRQNLLGKRVDYSARSVIAIGPDLKMYQAGLPREMAITLFKPFVI 425
***********876.567899******************************************************999877655 PP
== domain 3 score: 151.1 bits; conditional E-value: 9.7e-48
TIGR02390 407 hlidGdivlfnrqPslhrmsimghkvkvlPgktfrlnlavcpPynadfdGdemnlhvlqteearaeakelmkvekhilsPryGgpiiGgiqdyisgay 504
++i+ vl nr P+lhr+ i + + k++ gk+ rl+++v++ +nadfdGd+m +hv+ t+ea ae ++lm+ il P+ G +i+ qd+i g y
MMSYN1_0803 457 QVIKDRPVLLNRAPTLHRLGIQAFEPKLVKGKAIRLHPLVTTAFNADFDGDQMAVHVPITKEAVAESRALMLGSSAILGPKDGKAIVTPGQDIILGNY 554
45555679****************************************************************************************** PP
TIGR02390 505 lltvksklltkeev........akilkkak..lkeeleepaiekakk..............yytGkeifsallPedlnlelkakvsk.keackk..ee 575
lt+++k + + + k+ + l++ ++ ++ +++ Gk f +++ +++ + ++ + kea k+ ++
MMSYN1_0803 555 YLTTEEKYAKGQGMifssldeaFMAYKSNQadLNSLIGIALSALPEQkfsdknqrlnsyllTTVGKLYFNQIFDDNFPWINSNNIWNaKEAVKEfiYD 652
***99886554433111111002222222200222222221111122344445557776544569999999999999998888887723444431123 PP
TIGR02390 576 cesdayvviknGkllkGvidkkaigaekg.klldkivkeygseaarkfldsvtklairllelrgltislddidiPeeakeeieeliekaekkveklie 672
+d vi+n + ++ i +++ ++++ ++ +g+ +++++ld++ l + ++ g tis d+ a+++ + ++a +kve++ +
MMSYN1_0803 653 FSQDIDKVIENVQ------VQQPIKKKELsLIIERYFETHGARKTAEMLDKMKDLGFSFSTKSGTTISAGDVV----AFTHKYDEFKQADQKVEQITD 740
4455555555554......44444444332799************************************9986....55555667899********** PP
TIGR02390 673 eyrkgeleplPGrtveetleikilevldkvrdeagevaekyl..dkeneavilartGargsllnitqvaalvGqqsvrGerikrGykertlphfkkgd 768
y+ g l +i+ev ++v+d+ ++ l d +n +++ +Garg++ n tq++++ rG+++ t kgd
MMSYN1_0803 741 FYNMGMLTN-------SEKKRRIIEVWSDVKDKIQNELATVLrkDVKNPIFVMVDSGARGNVSNFTQLVGM------------RGLMNDT-----KGD 814
****99965.......3345677777777777776665555522558999****************99986............6777766.....777 PP
TIGR02390 769 ieakarGfvrssfkkGlePieyffhaagGreglvdtavrtsqsGylqrrlvnalqdlkveed 830
i+ ++ssf++Gl+ eyf + g r+g+ d a++t+ sGyl rrlv++ q++ v ++
MMSYN1_0803 815 IKEI---PIKSSFREGLTVSEYFVSTHGARKGMADIALKTADSGYLTRRLVDVSQEIVVVNE 873
7654...489**********************************************987554 PP
>> TIGR02389 RNA_pol_rpoA2: DNA-directed RNA polymerase, subunit A''
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.7 0.2 0.58 5.2e+02 343 356 .. 658 671 .. 645 779 .. 0.61
2 ! 62.5 0.1 8.9e-21 8e-18 37 90 .. 967 1021 .. 935 1036 .. 0.90
3 ! 8.2 0.3 0.00029 0.26 252 302 .. 1090 1140 .. 1059 1147 .. 0.86
4 ! 25.3 0.0 1.8e-09 1.7e-06 314 361 .. 1190 1237 .. 1177 1241 .. 0.93
Alignments for each domain:
== domain 1 score: -2.7 bits; conditional E-value: 0.58
TIGR02389 343 kgvveniivgkpir 356
+ v+en+ v +pi+
MMSYN1_0803 658 DKVIENVQVQQPIK 671
33444444444432 PP
== domain 2 score: 62.5 bits; conditional E-value: 8.9e-21
TIGR02389 37 leslidpgeavGivaaqsiGePgtqmtlrtFhyaGva.elnvtlGLPRlieivda 90
+ s+++ ge+vG++aaqsiGePgtq+t+r Fh Gva ++++t+GLPR+ e++d
MMSYN1_0803 967 TASVVNIGEPVGVIAAQSIGEPGTQLTMRNFHTGGVAgNVDITQGLPRIKELLDV 1021
578999******************************8679************996 PP
== domain 3 score: 8.2 bits; conditional E-value: 0.00029
TIGR02389 252 dikeieevlGieaaReaiieeikkvleeqGLdvdiRhlllvaDlmtadGev 302
d++ + e Gi+ + i++e++kv + qG+++ +++ ++ m ++ ++
MMSYN1_0803 1090 DLHQLLEFGGIQDVQNYILKEVQKVYRLQGIEISDKYIEIIIKQMLNKVKI 1140
788888888*****************************9999988776655 PP
== domain 4 score: 25.3 bits; conditional E-value: 1.8e-09
TIGR02389 314 kasvlaRaaFevtvkhLldaavrGevdelkgvveniivgkpirlGtGs 361
+s l a+F t + L +a ++G++d+l+g+ eni++g+ i+ GtG
MMSYN1_0803 1190 SSSWLSSASFQDTARVLTRAIIKGKEDKLEGLKENIMLGNLIPAGTGL 1237
578999****************************************95 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1255 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 293 (0.0652852); expected 89.8 (0.02)
Passed bias filter: 115 (0.0256239); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 5 (0.00111408); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 4191.24
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0803 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0804 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0804.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0804/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0804 [L=1291]
Description: rpoB: DNA-directed RNA polymerase, beta subunit 5=Equivalog Transcription
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0 1470.5 30.4 4.3e-261 867.3 16.5 4.5 4 TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit
3.1e-82 274.7 6.7 1.2e-73 246.3 3.0 2.2 2 TIGR03670 rpoB_arch: DNA-directed RNA polymerase subunit B
Domain annotation for each model (and alignments):
>> TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.0 0.0 1e-14 2.3e-11 2 111 .. 11 107 .. 10 117 .. 0.92
2 ! 117.1 0.0 5.5e-38 1.2e-34 110 221 .. 179 295 .. 155 313 .. 0.82
3 ! 867.3 16.5 1.9e-264 4.3e-261 310 892 .. 312 967 .. 292 973 .. 0.97
4 ! 452.4 2.2 3.3e-139 7.3e-136 988 1236 .. 973 1218 .. 966 1220 .. 0.98
Alignments for each domain:
== domain 1 score: 40.0 bits; conditional E-value: 1e-14
TIGR02013 2 kreridfakikealelPnllevqlksyekflqkdteaekrkeeGleevfkeifPiedssgkleLeylsyeleepkysveeckergltysvplkvklrl 99
+ er+d++k++ l+lPnl+ +q++ +e+f + +G++ev+ e+fPi ++ g+ +L+ ++ ++ep+ sv+ + e y++p++++l+l
MMSYN1_0804 11 NVERRDYTKVSMNLSLPNLIGIQTETFEWFKT----------KGIQEVLDEFFPILSFDGSSVLTLENWGFKEPRLSVRQAREESKIYDAPIYANLKL 98
56899*************************66..........8******************************************************* PP
TIGR02013 100 ilkeeegvkeik 111
++++ ++ei+
MMSYN1_0804 99 SVNK---TEEIQ 107
*977...44444 PP
== domain 2 score: 117.1 bits; conditional E-value: 5.5e-38
TIGR02013 110 ikeqdvylgeiPlmtdkgtfiinGaervvvsqlhrsPgvvfseekdtskkgkklfsakiiPsrGsWlefetDkk.......dllyvridrkrkllvtv 200
k+ +v+lg++Plmt+ gtfiinG+ +v+vsql+rsPg +f++e + k+g+ ++ a iiPsrG+Wle+etD+k + lyv+id+ rk ++t
MMSYN1_0804 179 YKSGEVFLGDFPLMTEAGTFIINGSQKVIVSQLVRSPGAYFNKEL-NRKTGEMIYFADIIPSRGTWLEYETDSKktgadaiNPLYVKIDKSRKTTATS 275
47789****************************************.8888**********************873444333459************** PP
TIGR02013 201 llralgyekdedilelfelve 221
ll a+g +kd dil++f+ e
MMSYN1_0804 276 LLLAFGISKD-DILDIFDNDE 295
*******955.5666776544 PP
== domain 3 score: 867.3 bits; conditional E-value: 1.9e-264
TIGR02013 310 eseeealleiykklrpgepptveaakslleklffdekrYdLgkvGryklnkklkleeael...................................... 369
+ + + eiykk+r+ge +t e a ++++++ fd+++YdL+k Gr+kl++kl+++++ l
MMSYN1_0804 312 IDWSNQVQEIYKKIRQGETATSEGASKFINSILFDKRKYDLTKAGRFKLKQKLSIKNRILnrviaedivdannnvlvakdtevnkhnikqiseildqd 409
44456899**********************************************99988899************************************ PP
TIGR02013 370 ............................................alvltkediiavikyliklkngkaevDDiDhlgnrrvrsvGellenqlrvglar 423
+ +t di++++ yl++lk + +e+DDiD+lgnrrvr+vGell+nq+r+gl+r
MMSYN1_0804 410 vmsvdlnylsdilgtrkvqkikvykdselktdttcligltsssnEEFITVADILSTVSYLLNLKYNIGEIDDIDNLGNRRVRTVGELLQNQFRMGLNR 507
*******************************************999**************************************************** PP
TIGR02013 424 mervvrerlsvkdtdtltPqdlinakpvvaaikeffgssqLsqfmDqtnPlaelthkrrlsaLGpGGLtreraGfevrDvhpthYGriCPietPeGpn 521
++++v+e+l+++d+ +++ +++inakp++a+i eff sqLsqfmDq nPl+elt+krrl+aLGpGGL+r+raG+evrDvhp+hYGriCPietPeGpn
MMSYN1_0804 508 IDKNVKEKLATSDLYKVKTSTIINAKPLTAIIGEFFNLSQLSQFMDQINPLSELTNKRRLTALGPGGLSRDRAGLEVRDVHPSHYGRICPIETPEGPN 605
************************************************************************************************** PP
TIGR02013 522 iGLinslstyakvneyGfietPyrkvkdgkvkvedevkyltadeedekviaqanakldeegkivedlvearvkgevtlvekeevdymdvspkqvvsva 619
iGLin lstya+vneyGfi+tPyrkv +g ++++ +v+yltad+e++++iaq+n++ de+gki+++ +++r++g+ +++ ee+dy+dvspkq+vsva
MMSYN1_0804 606 IGLINNLSTYARVNEYGFITTPYRKVINGIIQND-QVEYLTADQEKNFIIAQSNVNQDENGKILDEIIVSRFNGDDYMAKVEEIDYIDVSPKQIVSVA 702
*****************************77766.59************************************************************* PP
TIGR02013 620 aaliPfLehDDanraLmGsnmqrqavPllkseaplvGtGlekkvakDsgavvvakraGvvekvdakkivvrkkeeeeeekeslvdvYkllkfkrsnqd 717
++ iPfLe+DDanraLmG+nmqrqavPl+k+e+p+v tG+e ++a+Dsg+++vak++ +v++vd+k+i++ es++++Y l+ ++rsn++
MMSYN1_0804 703 TSGIPFLENDDANRALMGANMQRQAVPLIKPESPIVATGIEFEAARDSGEAIVAKEDAIVKYVDSKTIITD--------GESGIRTYILSDYERSNNG 792
********************************************************************982........34689************** PP
TIGR02013 718 tcinqrpivsvGdrveaGdvladgpstekGelaLGknvlvafmpWeGynyeDailiserlvkdDvftsihieefeveardtklGeeeitrdipnvsee 815
t++ q piv+vGd v++G+++adgps+++Gela+G+nv+vaf +++Gyn+eDai++ser+v dD ftsihi+e+++e+r+tk+G+ee+tr+ipn+se+
MMSYN1_0804 793 TSLTQSPIVKVGDVVKKGEIIADGPSMDQGELAIGQNVVVAFSTYNGYNFEDAIVMSERIVIDDRFTSIHIDEYTLEVRNTKQGQEEVTREIPNMSEQ 890
************************************************************************************************** PP
TIGR02013 816 alrnLdeeGivriGaevkagdiLvGkvtPkgeseltpeekLLraifGekardvrdaslrvpegveGvvidvkvfsre 892
a r+Ld eGiv+iG+evk gd+LvGkvtPkg+ +l+pe+kLL+aifGek+r+v+d+slrvp+g eG+v +k+f+ +
MMSYN1_0804 891 AKRHLDAEGIVAIGTEVKVGDVLVGKVTPKGQVQLSPEDKLLHAIFGEKSRNVKDNSLRVPNGGEGIVQSIKRFKAK 967
**************************************************************************875 PP
== domain 4 score: 452.4 bits; conditional E-value: 3.3e-139
TIGR02013 988 egdeLppGvnklvkvyvaqkrkiqvGDkmaGrhGnkGvvskilpieDmPfledGtpvdivLnPLgvPsrmniGqvlelhlglaakklgekgvkiat 1083
+g eLp+ +++++kvyv+qkrkiq+GDkm+GrhGnkG++s+ilpieDmP+ledGtpvdi+LnP gvPsrmniGq+le+hlg+aakkl+ k+ t
MMSYN1_0804 973 DGIELPADIIEVIKVYVVQKRKIQEGDKMSGRHGNKGIISRILPIEDMPHLEDGTPVDIILNPQGVPSRMNIGQILEIHLGMAAKKLN---QKVIT 1065
6789************************************************************************************...899** PP
TIGR02013 1084 pvfdgaseeevkellekaglprdgkvklyDGrtGekfdekvtvGviYmlkLahlvddklharsiGpYslvtqqPlGGkaqfGGqrfGemevWaLea 1179
pvf+g +e+e++e++ +ag+++ gkv+l DG+tGe+fd++++vGv+YmlkL+h+vddk+har +GpYsl+tqqPlGGkaq GGqrfGemevWaLea
MMSYN1_0804 1066 PVFEGLNEKELEEIMAEAGMTNYGKVTLIDGQTGEPFDKPIAVGVMYMLKLSHMVDDKIHARNVGPYSLITQQPLGGKAQNGGQRFGEMEVWALEA 1161
************************************************************************************************ PP
TIGR02013 1180 yGaayiLqelLtvksDDvaGrtkvyeaivkGenvpepgiPesfkvLikelqsLgldi 1236
yGaa++L+e+Lt+ksDD++Gr+k+yeaiv+ +++pepgiPesf+vL ke+ +Lg+++
MMSYN1_0804 1162 YGAAHTLREILTIKSDDIKGRSKTYEAIVRSKRIPEPGIPESFNVLSKEIMGLGFNM 1218
******************************************************997 PP
>> TIGR03670 rpoB_arch: DNA-directed RNA polymerase subunit B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.7 0.1 2.1e-11 4.7e-08 84 160 .. 633 732 .. 628 746 .. 0.93
2 ! 246.3 3.0 5.4e-77 1.2e-73 194 536 .. 823 1179 .. 815 1182 .. 0.87
Alignments for each domain:
== domain 1 score: 29.7 bits; conditional E-value: 2.1e-11
TIGR03670 84 edlvkeGvieyldaeeeenayialseee.......................lteehthleidpsailGivaslipyaehnssprntmeaamakqslGl 158
+ ++++ +eyl a++e+n ia+s+ + ee ++++ p++i+ +++s ip+ e +++ r m+a+m++q++ l
MMSYN1_0804 633 NGIIQNDQVEYLTADQEKNFIIAQSNVNqdengkildeiivsrfngddymaKVEEIDYIDVSPKQIVSVATSGIPFLENDDANRALMGANMQRQAVPL 730
56789999***************99988899*******************999999***************************************987 PP
TIGR03670 159 ya 160
+
MMSYN1_0804 731 IK 732
65 PP
== domain 2 score: 246.3 bits; conditional E-value: 5.4e-77
TIGR03670 194 erPagqnlvvavlsyeGyniedalvlnkasierglarsvffrtyeaeerrypgGqedkf.eiPekevrgyrseeaykkldedGivapeaevkgkdv 288
e gqn+vva +y+Gyn eda+v+ + + s++ y+ e r+ Gqe+ eiP+ se+a ++ld++Giva +evk +dv
MMSYN1_0804 823 ELAIGQNVVVAFSTYNGYNFEDAIVMSERIVIDDRFTSIHIDEYTLEVRNTKQGQEEVTrEIPN------MSEQAKRHLDAEGIVAIGTEVKVGDV 912
5668**********************99888777888*************99999875426665......478999******************** PP
TIGR03670 289 ligktsPPrfle...elee....lglaaekrrdssvtvrsgekGivdkvlltese............egsklvkvrvrderipelGdkfasrhGqk 365
l+gk++P ++ e + +g + ++ +d s+ v +g +Giv ++ +++ + ++kv v ++r + Gdk++ rhG k
MMSYN1_0804 913 LVGKVTPKGQVQlspEDKLlhaiFGEKSRNVKDNSLRVPNGGEGIVQSIKRFKAKsalnpdgielpaDIIEVIKVYVVQKRKIQEGDKMSGRHGNK 1008
*******8776643333221111345556669***************98644433111111111111456789*********************** PP
TIGR03670 366 GviGlivpqedmPfteeGivPdlilnPhalPsrmtvgqlleaiagkvaalegrrvdatafeeekeeelrkelkklGfkedgkevlydgitGeklea 461
G+i i+p edmP+ e+G d+ilnP ++Psrm +gq+le+ g +a ++v + +fe+ +e+el + + + G ++ gk +l dg+tGe ++
MMSYN1_0804 1009 GIISRILPIEDMPHLEDGTPVDIILNPQGVPSRMNIGQILEIHLGMAAKKLNQKVITPVFEGLNEKELEEIMAEAGMTNYGKVTLIDGQTGEPFDK 1104
************************************************999********************************************* PP
TIGR03670 462 eifiGvvyyqklhhlvadklharsrGpvqvltrqPteGrareGGlrfGemerdvlvghGaalllkerlldesdkv 536
i +Gv+y kl h+v dk+har Gp ++t+qP G+a++GG rfGeme +l ++Gaa +l+e l +sd +
MMSYN1_0804 1105 PIAVGVMYMLKLSHMVDDKIHARNVGPYSLITQQPLGGKAQNGGQRFGEMEVWALEAYGAAHTLREILTIKSDDI 1179
********************************************************************9999975 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1291 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 264 (0.0588235); expected 89.8 (0.02)
Passed bias filter: 97 (0.0216132); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.27
# Mc/sec: 6866.41
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0804 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0805 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0805.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0805/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0805 [L=391]
Description: transcription factor 2=Generic Regulation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.0098 14.0 1.3 0.024 12.8 1.3 1.6 1 TIGR00686 phnA: putative alkylphosphonate utilization operon
Domain annotation for each model (and alignments):
>> TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.8 1.3 5.3e-06 0.024 12 82 .. 230 300 .. 226 309 .. 0.88
Alignments for each domain:
== domain 1 score: 12.8 bits; conditional E-value: 5.3e-06
TIGR00686 12 ytyedstqlicpecayewnenevaeeddelivkdangnllaegdsvllikdlkvkgssevlkkgtkvknir 82
+ y++s +l+ p c + n+ne e ++l+ d n++ l + ++ +k++ + + ++ + k k + r
MMSYN1_0805 230 FQYNNSYKLVIPICHFLKNQNEYMYELENLLNNDFNADKLINLFNIDYLKNINMYNHASCIYKWVKKDKKR 300
789**************************************************999887777666655555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (391 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 267 (0.059492); expected 89.8 (0.02)
Passed bias filter: 69 (0.0153743); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 2955.23
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0805 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0806 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0806.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0806/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0806 [L=122]
Description: L12: ribosomal protein L7/L12 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-36 121.7 13.3 6.2e-36 121.5 13.3 1.0 1 TIGR00855 L12: ribosomal protein bL12
Domain annotation for each model (and alignments):
>> TIGR00855 L12: ribosomal protein bL12
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 121.5 13.3 1.4e-39 6.2e-36 4 125 .] 3 122 .] 1 122 [] 0.94
Alignments for each domain:
== domain 1 score: 121.5 bits; conditional E-value: 1.4e-39
TIGR00855 4 lskeeiiealkeltvlelselvkalEekfgvsAaaavaaaaaaaaaaeaaeektEfdvilkaaadkkiavikvvreitGlgLkEAkelveka.Pkalk 100
++k+eii+al+e+++ el+elvka+E++fgv A++ vaaaa a +++++ tE++v++++++++k+avikvv+e+tG+gL++Ak++v+++ P ++k
MMSYN1_0806 3 ITKDEIIKALEEMKLNELNELVKAIEDHFGVVASVGVAAAAPA---EATNAAPTEVSVVMTSVGQQKVAVIKVVKELTGVGLMDAKKIVDGTmPVTIK 97
789*******************************999988874...5678899*************************************755***** PP
TIGR00855 101 ekvskeeAeelkkkleeaGakvevk 125
e+v++eeAee+k+kl eaGa++++k
MMSYN1_0806 98 EHVKPEEAEEMKAKLVEAGASIDLK 122
*********************9987 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (122 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 393 (0.0875668); expected 89.8 (0.02)
Passed bias filter: 146 (0.0325312); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 922.09
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0806 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0807 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0807.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0807/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0807 [L=165]
Description: rplJ 4=Probable Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (165 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 237 (0.0528075); expected 89.8 (0.02)
Passed bias filter: 106 (0.0236185); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1184.74
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0807 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0809 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0809.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0809/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0809 [L=226]
Description: rplA_bact: ribosomal protein L1 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-99 330.0 6.0 1.6e-99 329.8 6.0 1.0 1 TIGR01169 rplA_bact: ribosomal protein uL1
2.8e-24 83.5 0.1 4e-24 83.0 0.1 1.2 1 TIGR01170 rplA_mito: ribosomal protein uL1, mitochondrial
Domain annotation for each model (and alignments):
>> TIGR01169 rplA_bact: ribosomal protein uL1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 329.8 6.0 7.3e-103 1.6e-99 1 223 [. 3 225 .. 3 226 .] 0.99
Alignments for each domain:
== domain 1 score: 329.8 bits; conditional E-value: 7.3e-103
TIGR01169 1 kkskrlkeiaekvdknklysleeaiellkelstakfdetvevaiklgvdprksdqqvRgsvvLPngtgksvrvlvfakgekaeeAkeaGAdlvGsedl 98
k+skr+ke+ +kv+knk y l++a++l k++st+kfd+tveva++l++dprk+dqq+Rg+vvLP+gtgk+ rvlv+++ k++eA++a Ad+vG+e+l
MMSYN1_0809 3 KISKRFKEALSKVEKNKVYPLTQALDLAKQTSTTKFDSTVEVAFNLNIDPRKADQQIRGAVVLPAGTGKTQRVLVLTNT-KTKEAEQAKADIVGGEEL 99
789*************************************************************************987.899*************** PP
TIGR01169 99 iekikkg.eldfDvviatpdmmkkvgklgkvLGprgLmPnpktgtvtadvakavkelkkGkvefradkagiihvsigkvsfeeeklkenlealleaik 195
i++ik++ ++dfD+++atp+mm+k+g +gk+LGp+gLmPnpktgtvt dvakav ++kkGkve+radk+g+ih+ igkvsfe ekl+en++a++++i
MMSYN1_0809 100 INRIKNEnWFDFDIIVATPEMMAKLGAIGKILGPKGLMPNPKTGTVTLDVAKAVDDIKKGKVEYRADKEGNIHLIIGKVSFEIEKLEENFKAVIDEIR 197
*****988****************************************************************************************** PP
TIGR01169 196 kakPsaaKgkylkkialsstmgpgikvd 223
+ kP+++Kg y+k+++ls+tmgpgikv+
MMSYN1_0809 198 RVKPQTVKGDYIKNVTLSTTMGPGIKVE 225
**************************97 PP
>> TIGR01170 rplA_mito: ribosomal protein uL1, mitochondrial
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 83.0 0.1 1.8e-27 4e-24 1 140 [] 21 159 .. 21 159 .. 0.88
Alignments for each domain:
== domain 1 score: 83.0 bits; conditional E-value: 1.8e-27
TIGR01170 1 ykvekavkylkeasislvspkqsvnldielkmelgkes..vqgvlslPkpfakeikiavFtkgaseveearekaslvGgedLikkIkdgeiklfdyvi 96
y+ ++a+ + k++s + +v++ +l+ + +k+ ++g + lP +k +++ v t+ + ++ e ka+ vGge+Li+ Ik+++ fd ++
MMSYN1_0809 21 YPLTQALDLAKQTSTT--KFDSTVEVAFNLNIDPRKADqqIRGAVVLPAGTGKTQRVLVLTNTKTKEAEQ-AKADIVGGEELINRIKNENWFDFDIIV 115
5678999999999988..66666677777777666666336********************998776665.56*****************999***** PP
TIGR01170 97 alpdiveeLaklaklLgkkgllPsvkrgtvsddlaslieklkkG 140
a+p+++++L ++ k+Lg+kgl+P++k gtv d+a+ ++ +kkG
MMSYN1_0809 116 ATPEMMAKLGAIGKILGPKGLMPNPKTGTVTLDVAKAVDDIKKG 159
**************************************999987 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (226 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 234 (0.052139); expected 89.8 (0.02)
Passed bias filter: 126 (0.0280749); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1545.46
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0809 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0810 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0810.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0810/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0810 [L=142]
Description: L11_bact: ribosomal protein L11 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-47 158.6 3.2 2.4e-47 158.4 3.2 1.0 1 TIGR01632 L11_bact: ribosomal protein uL11
Domain annotation for each model (and alignments):
>> TIGR01632 L11_bact: ribosomal protein uL11
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 158.4 3.2 5.4e-51 2.4e-47 1 139 [. 3 136 .. 3 137 .. 0.99
Alignments for each domain:
== domain 1 score: 158.4 bits; conditional E-value: 5.4e-51
TIGR01632 1 kkikaiiklqveagkAkPsppvGpalgqkgvnimeFckefNartkdlekgvvvpvvitvyeDksftfivktppvsvllkkaagvekgskkpkkekvgk 98
kki+++ kl+ a +AkP G l++ g+n+ +F++efN++tkd ++g vvpvvit+y+Dksf+f++kt+p++++lkk+a++ekg++++++++v++
MMSYN1_0810 3 KKITRVAKLEFMAMQAKP----GAELASLGINMPAFTREFNDATKD-RAGDVVPVVITAYDDKSFDFVLKTTPTAYMLKKVAKIEKGASNSRTQTVAT 95
799***************....88**********************.*************************************************** PP
TIGR01632 99 itlkqvreiAklKlsDlnaleleaavkiiaGtAksmGieve 139
+tl+++r iA++K+ Dlna+++eaa+k ++GtAk+mGi+v+
MMSYN1_0810 96 VTLDDIRSIAEYKMPDLNANTIEAAMKQVIGTAKNMGIKVT 136
***************************************97 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (142 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 178 (0.0396613); expected 89.8 (0.02)
Passed bias filter: 91 (0.0202763); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 971.04
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0810 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0813 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0813.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0813/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0813 [L=332]
Description: galE: UDP-glucose 4-epimerase GalE 5=Equivalog Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.6e-104 345.1 0.6 8.4e-104 344.9 0.6 1.0 1 TIGR01179 galE: UDP-glucose 4-epimerase GalE
1.3e-31 107.8 1.5 3.8e-31 106.3 1.5 1.6 1 TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
6e-24 82.7 3.6 1.6e-23 81.3 3.5 1.6 1 TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
4.3e-19 66.6 0.5 1.9e-17 61.2 0.3 2.0 2 TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LL
3.1e-14 50.8 0.1 6.5e-13 46.5 0.1 2.0 2 TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
4.2e-10 37.1 0.0 5.9e-10 36.6 0.0 1.1 1 TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
5.1e-10 36.7 0.0 7.4e-10 36.2 0.0 1.2 1 TIGR03466 HpnA: hopanoid-associated sugar epimerase
5.3e-07 26.8 0.7 2.8e-06 24.5 0.7 1.9 1 TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase (inv
5.2e-05 20.6 0.4 0.00088 16.5 0.4 2.2 1 TIGR01472 gmd: GDP-mannose 4,6-dehydratase
7.1e-05 20.1 0.0 0.00022 18.5 0.0 1.8 2 TIGR01746 Thioester-redct: thioester reductase domain
0.0001 19.3 0.5 0.00016 18.6 0.5 1.2 1 TIGR04130 FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-ep
0.0034 15.0 0.0 0.0061 14.1 0.0 1.4 1 TIGR01777 yfcH: TIGR01777 family protein
------ inclusion threshold ------
0.015 12.7 0.1 0.026 12.0 0.1 1.4 1 TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, A
Domain annotation for each model (and alignments):
>> TIGR01179 galE: UDP-glucose 4-epimerase GalE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 344.9 0.6 2.4e-106 8.4e-104 3 328 .. 4 328 .. 2 332 .] 0.95
Alignments for each domain:
== domain 1 score: 344.9 bits; conditional E-value: 2.4e-106
TIGR01179 3 LvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekitevklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvn 100
L+ GgaGyiGshv+ + +++ +v+++Dnls+gs++++++ + ++++gd+ d kl++v++++kid vi++a+li+vgEsv++Pl YY+ n+ +
MMSYN1_0813 4 LLIGGAGYIGSHVAEIINKTDNKVIIYDNLSSGSSDFIEQKS-----TFIQGDILDFDKLNDVFSSNKIDVVIYLAGLIKVGESVQKPLDYYQTNILG 96
889************************************999.....7************************************************** PP
TIGR01179 101 tleLleamqkagvkkliFsssaavYgesekvp..isEesplnpinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiG...easknat 193
++ l+ mq ++v+ ++FsssaavYg++++ + E+ p +p +pYGr+k E+i+kd++ a+++++++ LRYFnvaGA+++++iG +++++ t
MMSYN1_0813 97 LVNTLKIMQIHNVNYFVFSSSAAVYGNNSRHNgfFYEDDPKEPCSPYGRTKYFGEEIIKDFAIANPNFHYTFLRYFNVAGASKSKRIGyltQNNNKPT 194
**************************9987643389***************************************************94423334455 PP
TIGR01179 194 hliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDp 291
hli+ + a g ++k++ifG dy+t+DGtc+RDy++v++lae Hl + +++ +++ yn+G+g+gfs +e+i+++++ g ++ + +a+rR+GDp
MMSYN1_0813 195 HLIPAISYFAFGLTDKFSIFGSDYNTNDGTCIRDYVYVCELAELHLLTAQKMVKENRNLYYNIGSGKGFSNLEIIKEFERQLGYKLDIDIAQRRSGDP 292
************************************************************************************************** PP
TIGR01179 292 aslvadaskikrelgwkpkyddLeeiiksawdWekkl 328
lva++ k +el+++ k + +++i++s +++k +
MMSYN1_0813 293 DILVASNTKLCQELNYEIKTN-IKDIVESEIAFRKAH 328
*******************99.******998887766 PP
>> TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 106.3 1.5 1.1e-33 3.8e-31 2 309 .. 3 323 .. 2 331 .. 0.81
Alignments for each domain:
== domain 1 score: 106.3 bits; conditional E-value: 1.1e-33
TIGR01181 2 lLvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafiet 99
+L+ GGaG+iGs v i+++t d++v+ +D+L+ ++ +e+ + +f++gdi d ++++++++ +++d+v+ +a v +s+++p ++ +t
MMSYN1_0813 3 YLLIGGAGYIGSH-VAEIINKT-DNKVIIYDNLSSGSSD----FIEQ--KSTFIQGDILDFDKLNDVFSSNKIDVVIYLAGLIKVGESVQKPLDYYQT 92
7999*******96.78899999.889*******977753....2444..789********************************************** PP
TIGR01181 100 nvvGtytlleavrkelkevr.llhistDevyGdlekddaeftettplaPssPysaskaasdllvrayarty.glpvlitrcsnnyGp.......y... 185
n++G l ++ ++v+ ++ s vyG+ ++++ f e +p +P sPy +k ++ +++ +a + +++++ r n G+ y
MMSYN1_0813 93 NILGLVNTLKIMQI--HNVNyFVFSSSAAVYGNNSRHNGFFYEDDPKEPCSPYGRTKYFGEEIIKDFAIANpNFHYTFLRYFNVAGAskskrigYltq 188
********998876..566658899999********9988*************************987653245555555555544422222122221 PP
TIGR01181 186 ..qfpekliPllitnal.agkklpvyG......dGqqvrDwlyveDhcraielv...lekgrvgevyniggeeertnlevvkiilelldkdedlieyv 271
+ p liP ++ a k ++G dG+ +rD++yv + ++ l + k ++ ynig+++ +nle++k ++l+ ++ +i+
MMSYN1_0813 189 nnNKPTHLIPAISYFAFgLTDKFSIFGsdyntnDGTCIRDYVYVCELAELHLLTaqkMVKENRNLYYNIGSGKGFSNLEIIKEFERQLG-YKLDIDIA 285
11346779**9988765368899***97777777999*******9877644333111334455668***********************.8899**** PP
TIGR01181 272 edrpGhDrryaldaskikreLgwkpkvtfeeglrktvk 309
+ r G+ +k+ +eL ++ k+++++ +++ +
MMSYN1_0813 286 QRRSGDPDILVASNTKLCQELNYEIKTNIKDIVESEIA 323
*****98888888899********99999988877765 PP
>> TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 81.3 3.5 4.6e-26 1.6e-23 3 263 .. 5 279 .. 3 287 .. 0.77
Alignments for each domain:
== domain 1 score: 81.3 bits; conditional E-value: 4.6e-26
TIGR02197 3 vTGgaGfiGsnlvaalnekgetdilvvDklrkge.kllnlkdeeiadyidkeellerlekeelkkveavfHegAisdTteldgell..menNyeyske 97
+ GgaG+iGs ++ +n++ +++++ D+l++g+ +++ k + i+++i + + l+ + + +k+++v+ + + + e ++ l ++N+ +
MMSYN1_0813 5 LIGGAGYIGSHVAEIINKTD-NKVIIYDNLSSGSsDFIEQKSTFIQGDILDFDKLNDVFS--SNKIDVVIYLAGLIKVGESVQKPLdyYQTNILGLVN 99
67*********999888876.89*********9999*********999888777777766..389******999888877777655447899888888 PP
TIGR02197 98 llelcaekevk.liYASSAavYGdsee..efreekelerPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehK........gkmaSv 184
l++ + ++v+ +++ SSAavYG++++ +f e++ ++P Yg K + +e++++ + + + + + lryFNV G + + +k + +
MMSYN1_0813 100 TLKIMQIHNVNyFVFSSSAAVYGNNSRhnGFFYEDDPKEPCSPYGRTKYFGEEIIKDF-AIANPNFHYTFLRYFNVAGASKSKRigyltqnnNKPTHL 196
88888877775389*********9875115677888889**********999999855.5677777************87653321111111222223 PP
TIGR02197 185 v.fklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllek...keksGifnvGtgkarsfndlaaavvkalgkd 263
+ + + + ++k +F s +++dG +RD+vyv + +++ ll +k ++++ +n+G+gk s ++++ ++lg +
MMSYN1_0813 197 IpAISYFAFGLTDKFSIFGSDYNTNDGTCIRDYVYVCELAELHLLTAQKmvkENRNLYYNIGSGKGFSNLEIIKEFERQLGYK 279
313344556678999**************************99876554111567889*******999999998888777755 PP
>> TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 61.2 0.3 5.6e-20 1.9e-17 2 183 .. 4 182 .. 3 191 .. 0.84
2 ? 3.8 0.0 0.017 6 207 292 .. 225 308 .. 213 313 .. 0.73
Alignments for each domain:
== domain 1 score: 61.2 bits; conditional E-value: 5.6e-20
TIGR04180 2 lvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkav..kgvdvvfhlaaliaiPysyvapesyvetn 97
l+ G G+iGsh++e + ++ +v + y+ ++ G d +e ++ ++Gdi d + ++++ +++dvv++la li + s + p y +tn
MMSYN1_0813 4 LLIGGAGYIGSHVAEIINKTDNKV---IIYDNLS-SGSSDFIE----QKSTFIQGDILDFDKLNDVFssNKIDVVIYLAGLIKVGESVQKPLDYYQTN 93
567889*********988887776...3454443.24444444....555899**********9987225689************************* PP
TIGR04180 98 vkGtlnvlqaardlevekvvhtstsevyGtaqy..vPidekhplqaqsPysaskigadqlalsfyrs.felPvaivrPfntyGPrqsar 183
+ G +n l+ + ++v+ +v +s++ vyG e+ p ++ sPy +k +++ + f + + + +r fn G +s r
MMSYN1_0813 94 ILGLVNTLKIMQIHNVNYFVFSSSAAVYGNNSRhnGFFYEDDPKEPCSPYGRTKYFGEEIIKDFAIAnPNFHYTFLRYFNVAGASKSKR 182
*****************************8654114589*************************865268999**********999988 PP
== domain 2 score: 3.8 bits; conditional E-value: 0.017
TIGR04180 207 Ptrdfnyvkdtvegfiavae..sdkavGevinigsnfeisigdtvkliaeilgkeveivtdeerlrPekseverlladnskikeltgw 292
rd+ yv + +e + a+ ++ nigs++ s +++k+ ++ lg +++i ++r + + l+a+n+k+++ +++
MMSYN1_0813 225 CIRDYVYVCELAELHLLTAQkmVKENRNLYYNIGSGKGFSNLEIIKEFERQLGYKLDIDIAQRRSG----DPDILVASNTKLCQELNY 308
56999999999886554443113444455689**************************99888753....334466666666665555 PP
>> TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.5 0.1 1.9e-15 6.5e-13 9 167 .. 5 156 .. 2 179 .. 0.80
2 ? 2.5 0.0 0.045 16 223 331 .. 225 326 .. 218 332 .] 0.73
Alignments for each domain:
== domain 1 score: 46.5 bits; conditional E-value: 1.9e-15
TIGR02622 9 vtGhtGfkGsWlslwLkelGaevaGysldpetkpnlfellklakklkdssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvl 106
+ G G+ Gs ++ +++ +v+ y + + + ++ +++ + gdi d++kl++++++ k ++v++la v +s ++Pl+ ++tn+l
MMSYN1_0813 5 LIGGAGYIGSHVAEIINKTDNKVIIYDNLSSGSSDF---IEQKST----FIQGDILDFDKLNDVFSSNKIDVVIYLAGLIKVGESVQKPLDYYQTNIL 95
566677777777777777777777665444433333...333333....478********************************************** PP
TIGR02622 107 GtvnlleavralesvkavvlvtsDkvYenkewvwgy.retdalGGhDpYsaskaaaelvvas 167
G vn l++++ +++v+ v s vY n+++ +g+ e+d+ pY k e +++
MMSYN1_0813 96 GLVNTLKIMQ-IHNVNYFVFSSSAAVYGNNSRHNGFfYEDDPKEPCSPYGRTKYFGEEIIKD 156
******9875.66799**************99887527999998899998888777766665 PP
== domain 2 score: 2.5 bits; conditional E-value: 0.045
TIGR02622 223 avrPWqhvLepLsGYlllaeklledeaelaeafnfGPeaeenkkvvelvkkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsle 320
+r + +v e + +ll a+k+++++ +l +n+G + + e++k+ +++l g k i+ +++++ + ++L + +k ++l+++ + +++
MMSYN1_0813 225 CIRDYVYVCELAELHLLTAQKMVKENRNLY--YNIGSGK--GFSNLEIIKEFERQL-GYKLDID--IAQRRSGDPDILVASNTKLCQELNYEIKTNIK 315
577777888888888999999999988765..9999877..556667776665555.4444444..44556778889999999999999999999999 PP
TIGR02622 321 eaveatveWyk 331
+ ve + + k
MMSYN1_0813 316 DIVESEIAFRK 326
88888887766 PP
>> TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.6 0.0 1.7e-12 5.9e-10 3 138 .. 4 157 .. 2 165 .. 0.89
Alignments for each domain:
== domain 1 score: 36.6 bits; conditional E-value: 1.7e-12
TIGR01214 3 litGakgqlgreLveqlskegsevvaltrs...............qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlA 85
l++G++g +g++ +e + k++ +v+ +++ q d+ d ++l+ ++ + k dvv+ a +V ++ +++ y+ N l+ n
MMSYN1_0813 4 LLIGGAGYIGSHVAEIINKTDNKVIIYDNLssgssdfieqkstfiQGDILDFDKLNDVFSSNKIDVVIYLAGLIKVGESVQKPLDYYQTNILGLVNTL 101
799****************88888888776799***************************************************************99 PP
TIGR01214 86 raaarvgal.lvhiSTDYvFDG..ekkrpYreedetnPlnvYgqsKlaGEvavraa 138
++ + +++ +v+ S v+ +++ + e+d+ P + Yg++K+ GE ++++
MMSYN1_0813 102 KIMQIHNVNyFVFSSSAAVYGNnsRHNGFFYEDDPKEPCSPYGRTKYFGEEIIKDF 157
9999999861566666666644334556799********************99875 PP
>> TIGR03466 HpnA: hopanoid-associated sugar epimerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.2 0.0 2.2e-12 7.4e-10 2 157 .. 2 159 .. 1 164 [. 0.88
Alignments for each domain:
== domain 1 score: 36.2 bits; conditional E-value: 2.2e-12
TIGR03466 2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdeaslkkalkG..cealfHvAAdyrl..wakdpeelykanvegtra 95
+ l+ G++G++Gs+v++++ ++ ++v + +s ++++ e + ++Gd+ d ++l++ + +++++++A ++ +++p + y++n+ g +
MMSYN1_0813 2 NYLLIGGAGYIGSHVAEIINKTDNKVIIYDNLSSGSSDFIEQKSTFIQGDILDFDKLNDVFSSnkIDVVIYLAGLIKVgeSVQKPLDYYQTNILGLVN 99
56899*****************************************************9876523889*****999883357888999********** PP
TIGR03466 96 vleaAleagvervvytssvatlgvkedgkeadettpsklekmiGhYkrskflAEqaveelaa 157
l+ + ++v+ v++ss a+ g+++ + + + ++ + +Y r+k+ E++++++a
MMSYN1_0813 100 TLKIMQIHNVNYFVFSSSAAVYGNNSR--HNGFFYEDDPKEPCSPYGRTKYFGEEIIKDFAI 159
**********************96554..444456666778899*************99875 PP
>> TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase (inverting)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.5 0.7 8e-09 2.8e-06 8 122 .. 4 114 .. 1 202 [. 0.78
Alignments for each domain:
== domain 1 score: 24.5 bits; conditional E-value: 8e-09
TIGR03589 8 litGgtGsfGkkfikkllekykvkkiiiysrdelkqfelqqkfeedklrffiGdvrdkerleral..edvdlvvhaaalkqvpaaeynPleciktnie 103
l+ Gg+G G + ++++++k + +k+iiy d+l + ++f e+k f Gd+ d ++l+ + +++d+v++ a l +v + Pl+ +tni
MMSYN1_0813 4 LLIGGAGYIGSH-VAEIINKTD-NKVIIY--DNLS--SGSSDFIEQKSTFIQGDILDFDKLNDVFssNKIDVVIYLAGLIKVGESVQKPLDYYQTNIL 95
778999*99976.667777765.689999..5564..456789999999************99763378***************************** PP
TIGR03589 104 Gaenvidaaldkgvkkvva 122
G n ++ ++v+ v
MMSYN1_0813 96 GLVNTLKIMQIHNVNYFVF 114
****999888888877664 PP
>> TIGR01472 gmd: GDP-mannose 4,6-dehydratase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.5 0.4 2.6e-06 0.00088 59 234 .. 48 232 .. 29 326 .. 0.61
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 2.6e-06
TIGR01472 59 hyGdltdsssllklieeikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeip..qkektpfnprsp 154
Gd+ d l+ + ++ k + + la +v s + p +++ l l+++++i++ ++ f +s++ +yG+ e+ p +p sp
MMSYN1_0813 48 IQGDILDFDKLNDVFSSNKIDVVIYLAGLIKVGESVQKPLDYYQTN---ILGLVNTLKIMQIHNVNYFVFSSSAAVYGNNSRHNgfFYEDDPKEPCSP 142
4699999999999999999999999999999998888875444444...45566666766665555666778889***8766542268********** PP
TIGR01472 155 yaaaklyayyivvnyreay.glfavnGilfnhe..sprrGetfvtr...kitr...avakialgleeklylGnld.akrdwGyakdyvea 234
y+ +k + i++++ a +++ + fn s+ + ++t+ k t+ a++ a+gl++k+++ d d +dyv +
MMSYN1_0813 143 YGRTKYFGEEIIKDFAIANpNFHYTFLRYFNVAgaSKSKRIGYLTQnnnKPTHlipAISYFAFGLTDKFSIFGSDyNTNDGTCIRDYVYV 232
*******99999999877623333334456643113333333444311133331114445556677766654333133444455666654 PP
>> TIGR01746 Thioester-redct: thioester reductase domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.1 0.0 0.6 2.1e+02 3 28 .. 4 27 .. 2 30 .. 0.71
2 ! 18.5 0.0 6.4e-07 0.00022 110 200 .. 91 179 .. 38 188 .. 0.76
Alignments for each domain:
== domain 1 score: -1.1 bits; conditional E-value: 0.6
TIGR01746 3 lLTGAtGfLGaylleeLlrrsteakv 28
lL G G++G + +e + ++ t+ kv
MMSYN1_0813 4 LLIGGAGYIGSHVAEII-NK-TDNKV 27
899*********77644.44.34455 PP
== domain 2 score: 18.5 bits; conditional E-value: 6.4e-07
TIGR01746 110 aaNVegtvevlrlaasgkakpliyvStlsvlaaielsa.kvevddatetkkpglatGYaqSKwvaEllvreasdr..glpvtivRpGrilgdse 200
++N+ g+v+ l++ + ++ +++ S+++v+ ++ +dd+ e + +Y+++K+ +E +++ + + t +R +++g+s+
MMSYN1_0813 91 QTNILGLVNTLKIMQIHNVNYFVFSSSAAVYGNNSRHNgFFYEDDPKEPCS-----PYGRTKYFGEEIIKDFAIAnpNFHYTFLRYFNVAGASK 179
79*****************************99888885555555554444.....5************8743332466667777777777665 PP
>> TIGR04130 FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.6 0.5 4.6e-07 0.00016 8 132 .. 4 124 .. 2 128 .. 0.81
Alignments for each domain:
== domain 1 score: 18.6 bits; conditional E-value: 4.6e-07
TIGR04130 8 litggtgsfgnavlrrfldtdikeirifsrdekkqddmrkkynnkklkfyigdvrdyrsiln..atrgvdfiyhaaalkqvpscefhpleavktnvlg 103
l+ gg+g +g v + + +td k i i+ ++ ++k f gd+ d+ + + ++ +d + + a l +v +pl+ +tn+lg
MMSYN1_0813 4 LLIGGAGYIGSHVAEIINKTDNKVI-IYDNLSSGS----SDFIEQKSTFIQGDILDFDKLNDvfSSNKIDVVIYLAGLIKVGESVQKPLDYYQTNILG 96
5678999999999999999997765.554444333....45778999**********987552267889*9999999999*9999************* PP
TIGR04130 104 tenvleaaianevkrvvclstdkavypin 132
n l+ +v+ v +s+ avy n
MMSYN1_0813 97 LVNTLKIMQIHNVNYFV-FSSSAAVYGNN 124
******99999998877.56778999766 PP
>> TIGR01777 yfcH: TIGR01777 family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.1 0.0 1.8e-05 0.0061 2 68 .. 4 77 .. 3 141 .. 0.62
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 1.8e-05
TIGR01777 2 litGgtGliGralveelekkghevviltrskekekeekkesakevaee........aeee..alegvdavinLaGep 68
l+ Gg G iG++++e ++k +++v+i ++ +++ +++ ++++ + + + +++d+vi LaG
MMSYN1_0813 4 LLIGGAGYIGSHVAEIINKTDNKVIIYDNLSSGSSDFIEQKS-TFIQGdildfdklN--DvfSSNKIDVVIYLAGLI 77
789**********************99888885555554444.44444466654433..155899*********964 PP
>> TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.0 0.1 7.6e-05 0.026 3 62 .. 4 66 .. 2 125 .. 0.75
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 7.6e-05
TIGR03649 3 LllgGtGkvasriarllaaasvpllvasrssssaaledekavkF...dwldedtyenvfssdd 62
Ll+gG G ++s++a+++++++ +++ ss ++ e++ +F d ld d ++vfss++
MMSYN1_0813 4 LLIGGAGYIGSHVAEIINKTDNKVIIYDNLSSGSSDFIEQKSTFiqgDILDFDKLNDVFSSNK 66
99*******************999997665555444444444443449999999999996543 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (332 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 226 (0.0503565); expected 89.8 (0.02)
Passed bias filter: 159 (0.0354278); expected 89.8 (0.02)
Passed Vit filter: 32 (0.00713012); expected 4.5 (0.001)
Passed Fwd filter: 13 (0.00289661); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 13 [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.23
# Mc/sec: 2072.90
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0813 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0814 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0814.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0814/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0814 [L=395]
Description: glf: UDP-GALP_mutase: UDP-galactopyranose mutase 5=Equivalog Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.5e-117 388.6 13.6 7.4e-117 388.4 13.6 1.0 1 TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
1.3e-05 22.0 0.0 2e-05 21.3 0.0 1.2 1 TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
------ inclusion threshold ------
0.022 11.7 0.2 0.034 11.1 0.2 1.3 1 TIGR02668 moaA_archaeal: probable molybdenum cofactor biosyn
Domain annotation for each model (and alignments):
>> TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 388.4 13.6 5e-120 7.4e-117 1 377 [. 13 390 .. 13 391 .. 0.96
Alignments for each domain:
== domain 1 score: 388.4 bits; conditional E-value: 5e-120
TIGR00031 1 kfdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdekgllvhkyGphifhtdnkkvldyisdfvelneyqhrvlklknnldltlPfdl 98
++dyi +G+Gls + ++ l ++kr+l++ekr+hiGGn+yd+ ++ +lvh+yGphifht++k+v+d++++f+ +n y++ v + +++ ++lP ++
MMSYN1_0814 13 SYDYIFIGCGLSTATVCAKLP-KDKRILIIEKREHIGGNVYDHKKND-ILVHQYGPHIFHTNDKEVFDFLNQFTTFNSYKNVVQAKIDDELIPLPVNV 108
59*********9876655555.479*****************99887.***********************************9999999******** PP
TIGR00031 99 nqlrkllgvkdaekleeilkerfklekkvpllelqeiddpdiellaeflyrkvykpytvkqWGlkleeldeevikrvkvvlsedssyfsdriqglPkg 196
++++ l++ ++ae+ +++lke+f+ +++v++lel +id + +++++ +y++++ +yt k+W k+e+ld +v rv++ l++ ++yf+d + glP +
MMSYN1_0814 109 DSIKILFP-NEAEDFINYLKEKFPNQEQVTILELSQID--KYQHIYQTIYTRIFASYTGKMWDKKIEDLDVSVFARVPIYLTKRNTYFTDTYEGLPTK 203
********.99**************************9..89******************************************************** PP
TIGR00031 197 Gytklvekmldhplidlkln.skaellklkdekllfankeirkkvvytGlidqlfdyrfGeleyrslkfeferaevkkfqevavvnfpldksitrive 293
Gyt++v mld id+ ln ++ l+ kd++++++++ i+k+v+ + +id++f+y++ +l+yrsl+++fe + ++ q++avvn+p ++++tri+e
MMSYN1_0814 204 GYTQMVLNMLDSSNIDIVLNiNITKHLQIKDNQIYINDELITKPVINCAPIDEIFGYKYDKLPYRSLNIKFEELNNPNLQTTAVVNYPEHPKMTRITE 301
********************556789************************************************************************ PP
TIGR00031 294 ykqltqee..skqtivskeyPleykegd...nepyyPvnddknkalfkkylelasklenlillGrlaeykyidmdkvilaalkkveell 377
yk++ +e k+ti+ske+P++++++ e yyP+ +d ++++++ky+e ++k++nl+ lGrla+y+yi+md+++ al ++el+
MMSYN1_0814 302 YKNFYPEIsnDKNTIISKEFPGAFEQNSkefSERYYPIPNDVSRDQYNKYVEESKKISNLYQLGRLAQYRYINMDQAVRSALDFADELI 390
****987544899*************9988899*************************************************9999987 PP
>> TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.3 0.0 1.3e-08 2e-05 13 73 .. 21 82 .. 15 110 .. 0.87
Alignments for each domain:
== domain 1 score: 21.3 bits; conditional E-value: 1.3e-08
TIGR00562 13 sGLciayalekerpdvelvlvEakdRvGGkiyTrkesGyll.EkGprtlleskegildllkd 73
GL++a + +k+ +d + ++E+++ +GG++y k++ +l+ Gp+ ++ +++ + d+l +
MMSYN1_0814 21 CGLSTATVCAKLPKDKRILIIEKREHIGGNVYDHKKNDILVhQYGPHIFHTNDKEVFDFLNQ 82
4899********99*******************99999877256**********9***9976 PP
>> TIGR02668 moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.1 0.2 2.3e-05 0.034 116 202 .. 69 157 .. 68 234 .. 0.78
Alignments for each domain:
== domain 1 score: 11.1 bits; conditional E-value: 2.3e-05
TIGR02668 116 ldtldeekykkitsrdaleevlegiekAvdvgltPvKlnmvvlkglneeevkellelaae..eegailqliElepeeegekelkkyaid 202
++t d+e + + + +++++ + +++ +d l P+ +n+ +k l +e ++++++++e ++ ++ ++El + ++ ++ +++ ++
MMSYN1_0814 69 FHTNDKEVFDFLNQFTTFNSYKNVVQAKIDDELIPLPVNVDSIKILFPNEAEDFINYLKEkfPNQEQVTILELSQIDKYQHIYQTIYTR 157
699*****************************************9999*********99944477888899999888776555554433 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (395 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 239 (0.0532531); expected 89.8 (0.02)
Passed bias filter: 112 (0.0249554); expected 89.8 (0.02)
Passed Vit filter: 18 (0.0040107); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.21
# Mc/sec: 2701.13
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0814 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0817 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0817.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0817/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0817 [L=309]
Description: transcription factor, WhiA like 2=Generic Regulation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.4e-56 188.3 9.6 5e-56 188.2 9.6 1.0 1 TIGR00647 DNA_bind_WhiA: DNA-binding protein WhiA
Domain annotation for each model (and alignments):
>> TIGR00647 DNA_bind_WhiA: DNA-binding protein WhiA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 188.2 9.6 1.1e-59 5e-56 2 302 .. 5 308 .. 4 309 .] 0.95
Alignments for each domain:
== domain 1 score: 188.2 bits; conditional E-value: 1.1e-59
TIGR00647 2 sevKkEltqlevikkelakaelsAllrmngllslsnrqlslkvqtenaaiarrlykllkelyeievellvkkksklkknnrYlvrvkekvqelleelg 99
evK+E++ + + e+++a ls ++r + + +sn+ + +t + +iar l ++ +++++ +ve+ + ++ lkk + +++ ++ + ++ l++l
MMSYN1_0817 5 LEVKEEIVMHSF-NDEQKLAYLSGFIRYSSDIIFSNNTSKIRFSTISNKIARTLLSFCRHIFDGQVEISIIQSQVLKKHKSFVLTLIGDTNKFLQKLR 101
58*******888.5566********************************************************************************* PP
TIGR00647 100 lldeekglvrglde.evvsseladkkaylrGAFLagGSvsdpesssyhLeissnneeqaeaLvkllnrfglkakalerr.kglivylkeaekIgdfLk 195
+ d++++ v g + + +++++++ +ay+ G F a GSv+ p++s+yhL++ +n+ a+ ++l n +g + k ler + +i y+k+ ++dfLk
MMSYN1_0817 102 IYDQNNQKVYGFKVsSEIKDKTSILRAYIAGIFTAIGSVNSPKTSNYHLDLQFKNKIDANYFIDLTNDLGFEFKLLERNaNRFICYIKKSIMVSDFLK 199
******999977641346777777****************************************************99736789************** PP
TIGR00647 196 ligAhdallafEekrierevrnsvnRlvNletANLrktvraavkqaeqikliekelgldklpekLqevaklrlehpdasLeelgelletk..pitksg 291
li+A +++++fE+ ri r+v ns+nR +N+++ N kt+ + kq+e i++++++ + l++k q +a+lrle+pd+s +el e +++ +itksg
MMSYN1_0817 200 LIDASNSVMQFENERISRDVYNSINRVNNFDISNQTKTLVTGQKQIETINYLKQTNQFHLLSKKAQVLANLRLEYPDYSYNELVEEMKKVgyEITKSG 297
************************************************************************************99988779****** PP
TIGR00647 292 vnhrlrklkkl 302
+ +++ ++kl
MMSYN1_0817 298 ISNLFKTIEKL 308
********997 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (309 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 262 (0.0583779); expected 89.8 (0.02)
Passed bias filter: 86 (0.0191622); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 2113.03
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0817 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0818 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0818.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0818/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0818 [L=476]
Description: lgt 3=Putative Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-27 93.6 18.8 7.2e-25 85.9 9.6 2.7 3 TIGR00544 lgt: prolipoprotein diacylglyceryl transferase
Domain annotation for each model (and alignments):
>> TIGR00544 lgt: prolipoprotein diacylglyceryl transferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -4.3 0.2 0.48 2.2e+03 256 270 .. 19 33 .. 13 44 .. 0.49
2 ! 85.9 9.6 1.6e-28 7.2e-25 21 191 .. 70 282 .. 62 326 .. 0.68
3 ! 13.7 0.1 1.6e-06 0.0073 209 262 .. 393 450 .. 371 461 .. 0.80
Alignments for each domain:
== domain 1 score: -4.3 bits; conditional E-value: 0.48
TIGR00544 256 lllivgilillvlak 270
l +i++ili+ ++
MMSYN1_0818 19 LWVILSILIISLIVL 33
344444444444333 PP
== domain 2 score: 85.9 bits; conditional E-value: 1.6e-28
TIGR00544 21 airWYglivalgiiiaillivrklqkknvgiqkdefesllfiavlgvvlgaRlgyvlieek...gdylseplnifkvfdgGlaihGgllgaiiagliy 115
+r Y+l ++lg+++ai + +++ +kk ++ e + +++ + +lga l + + ++ +f++++gGlaihGg+ +i+gli
MMSYN1_0818 70 GLRVYALTMTLGMLVAIGFSLYNFNKK--DLSISELAIGVIFIIPCSLLGASFFGKLNADGigrHANGATFWGLFAFWEGGLAIHGGVYVGSIVGLII 165
6888***********************..555555666666666666666655554444433225556789****************97777777776 PP
TIGR00544 116 s....rekkksflkllDliapavllGqaiGRlgNFlNaElyGrvlkgs...................tpwglliplvkk................... 171
+ r++k s+l+++D i p +llGqaiGR+gNF+N+E+ G ++++ + +
MMSYN1_0818 166 FyiigRKTKVSLLVYADCIIPNILLGQAIGRWGNFFNHEVLGTPVAKIadnisahtdkaidqifstyL----------Qthsrplflpdfilknclsi 253
66999**************************************9998555555544433332222220..........12333344444444444444 PP
TIGR00544 172 .........vsdldlidglfriPsfLiEs 191
++ l+ ++ + P f++Es
MMSYN1_0818 254 ysgetqtinNITLENGNVVLLSPIFIYES 282
44444443333333334445556666665 PP
== domain 3 score: 13.7 bits; conditional E-value: 1.6e-06
TIGR00544 209 irkdgtiavvYllgygifRliiEylRepd....lklsealflaismsqiLilllivgi 262
i k g ++ Y+l+ i+R+++E +R d ++l++ + i +s+i+ l+++++
MMSYN1_0818 393 ITKAGVQMFAYFLVWNIVRYVLESQRPSDhlfiMHLKNLSLFVIGFSAIIGLIGMIVC 450
44579999*******************9977776777777888888888888877765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (476 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 210 (0.0467914); expected 89.8 (0.02)
Passed bias filter: 92 (0.0204991); expected 89.8 (0.02)
Passed Vit filter: 6 (0.0013369); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 3597.67
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0818 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0819 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0819.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0819/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0819 [L=310]
Description: TRX_reduct: thioredoxin-disulfide reductase 5=Equivalog Redox homeostasis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7e-107 354.6 1.8 7.9e-107 354.4 1.8 1.0 1 TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
8.1e-76 253.7 3.8 9.3e-76 253.5 3.8 1.0 1 TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reducta
8.5e-71 237.0 2.4 1e-70 236.7 2.4 1.0 1 TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F
5.8e-23 79.1 2.5 2.4e-16 57.4 0.4 2.1 2 TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidored
1.7e-21 74.4 5.4 4e-13 46.8 0.8 2.1 2 TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
9.7e-19 65.6 3.9 5.1e-15 53.3 0.5 2.0 2 TIGR02053 MerA: mercury(II) reductase
1.6e-14 51.9 2.0 9.9e-11 39.4 0.3 2.1 2 TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
3.9e-14 50.2 2.1 6e-14 49.6 0.3 1.9 2 TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
9.2e-13 45.7 1.9 6.6e-05 19.8 0.0 3.6 4 TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
5.8e-10 36.8 0.3 5.7e-08 30.2 0.0 2.4 2 TIGR00292 TIGR00292: thiazole biosynthesis enzyme
7.2e-10 34.9 0.7 2.4e-09 33.2 0.7 1.8 1 TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
9.3e-10 34.9 0.1 5.9e-09 32.2 0.1 1.9 1 TIGR01372 soxA: sarcosine oxidase, alpha subunit family
1e-09 35.8 3.8 8e-07 26.2 1.0 2.0 2 TIGR01438 TGR: thioredoxin and glutathione reductase
1.1e-09 35.4 1.6 3.2e-06 24.0 0.3 2.1 2 TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
7.4e-09 32.9 0.6 2.3e-05 21.4 0.1 2.6 2 TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, smal
8.7e-09 32.6 2.5 3.3e-05 20.8 0.3 3.5 4 TIGR00275 TIGR00275: flavoprotein, HI0933 family
7.3e-08 30.4 0.5 3e-07 28.4 0.1 2.2 2 TIGR02032 GG-red-SF: geranylgeranyl reductase family
8.7e-08 28.9 0.1 1.7e-06 24.7 0.1 2.2 1 TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE famil
2e-06 24.9 0.4 4.9e-05 20.3 0.0 2.3 3 TIGR03452 mycothione_red: mycothione reductase
1.2e-05 21.8 0.8 0.017 11.4 0.0 3.5 4 TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modi
1.5e-05 21.7 0.1 0.00037 17.1 0.0 2.6 3 TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
1.5e-05 22.4 0.0 3.6e-05 21.2 0.0 1.5 2 TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxido
1.6e-05 22.0 0.3 0.013 12.4 0.0 2.5 2 TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase,
3.6e-05 20.9 0.0 5.6e-05 20.3 0.0 1.3 1 TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenas
4.7e-05 20.8 1.1 0.001 16.4 0.2 3.1 4 TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
6.3e-05 19.8 0.0 0.00014 18.7 0.0 1.5 1 TIGR02734 crtI_fam: phytoene desaturase
9.5e-05 19.5 0.1 0.00094 16.2 0.0 2.1 2 TIGR02023 BchP-ChlP: geranylgeranyl reductase
0.0001 19.5 0.1 0.058 10.4 0.2 2.6 3 TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiour
0.00019 18.3 1.6 0.00031 17.6 0.1 2.1 3 TIGR01813 flavo_cyto_c: flavocytochrome c
0.00026 17.2 0.2 0.00089 15.4 0.0 1.9 2 TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotei
0.00059 16.6 1.9 0.1 9.2 0.0 3.5 4 TIGR00551 nadB: L-aspartate oxidase
0.0011 15.9 0.6 0.017 11.9 0.1 2.6 3 TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, U
0.0015 15.2 0.7 0.0024 14.6 0.1 1.6 1 TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
0.0017 14.9 0.0 0.0023 14.4 0.0 1.1 1 TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE famil
0.0021 14.6 0.7 0.014 11.9 0.1 2.3 2 TIGR01423 trypano_reduc: trypanothione-disulfide reductase
0.0025 15.0 0.1 0.011 12.8 0.1 2.0 2 TIGR01790 carotene-cycl: lycopene cyclase family protein
0.0056 13.4 0.1 0.016 12.0 0.0 1.7 2 TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
0.0065 13.5 0.6 0.02 11.9 0.1 2.0 2 TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03
0.0094 12.7 0.0 0.016 12.0 0.0 1.4 1 TIGR01373 soxB: sarcosine oxidase, beta subunit family
------ inclusion threshold ------
0.01 12.4 0.1 1.2 5.6 0.0 2.2 2 TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
0.012 12.0 1.4 0.02 11.3 0.1 2.0 4 TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarat
0.017 11.9 2.0 0.056 10.2 0.1 2.6 4 TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
0.021 11.9 3.3 0.42 7.6 0.0 2.7 3 TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein Py
0.022 11.6 0.0 0.038 10.7 0.0 1.3 1 TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
0.022 11.3 0.5 1.7 5.0 0.0 2.5 3 TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprot
0.024 11.3 0.7 0.29 7.7 0.1 2.6 3 TIGR02731 phytoene_desat: phytoene desaturase
0.029 11.1 1.0 0.046 10.5 0.2 1.7 2 TIGR02730 carot_isom: carotene isomerase
Domain annotation for each model (and alignments):
>> TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 354.4 1.8 8.3e-109 7.9e-107 1 299 [. 9 305 .. 9 306 .. 0.97
Alignments for each domain:
== domain 1 score: 354.4 bits; conditional E-value: 8.3e-109
TIGR01292 1 ydviiiGaGpaGltaaiYaaranlktlliegkeaggqlttttevenyPGfkegisgselmekmkeqakkfgaeiileevkkvdkker.pfkvltedek 97
ydviiiG+GpaGlt+aiY+ara+lkt+++e++++gg+l +t+ +enyPGf+ +i+g++l++km+ qa +++a++ + v+++ k+ + +f + +++++
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPGGKLIKTDLIENYPGFE-TIQGPDLASKMYLQALSLNASVEFVGVNSIFKNADdIFEISLANGE 105
79************************************************6.5****************************9765544********** PP
TIGR01292 98 eykakaviiAtGakarklgikgeeeflgrGvsyCavCDgalfknkevavvGggdsAveealyLskiakkVtlvhrrdklraekillerlkknekievl 195
+ ka avi+AtG+++ klgikge+e++g+GvsyCavCDga++knk+vavvGgg sAv+ea+yLs++++kV+l++rrd +ra++ + +lk+++++e+l
MMSYN1_0819 106 TKKAYAVILATGTQENKLGIKGEDELYGKGVSYCAVCDGAFYKNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVRRDVFRADANKVAKLKAQPNVEFL 203
************************************************************************************************** PP
TIGR01292 196 lnstveeikGdekvesvkikntktkeeeelkvdgvFiaiGhepntellkelleldeegyivvdeemrTsveGvfaaGDvrdkslrQvvtaagdGaiAa 293
l+s+v+ei+G+ekves++i+ + + e++l+v+++F +iG++p + +k+l+ +e+gyi ++++m+T+++G+f aGDvrd lrQ++ a+gdGaiA
MMSYN1_0819 204 LKSQVKEIHGTEKVESLTIT--TPNGEKKLEVSAIFPYIGSTPLIDSVKHLCIENEKGYIPTNDKMQTEIKGLFVAGDVRDVPLRQIAIACGDGAIAG 299
*******************8..6677889**********************99999*****************************************9 PP
TIGR01292 294 lsveky 299
+ + +y
MMSYN1_0819 300 QMAVEY 305
988877 PP
>> TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 253.5 3.8 9.7e-78 9.3e-76 1 312 [. 5 310 .] 5 310 .] 0.92
Alignments for each domain:
== domain 1 score: 253.5 bits; conditional E-value: 9.7e-78
TIGR03143 1 teelydlvviGgGpaglsaGiyagraklkvliiekdelGGqititsevvnyPgireitGeelmqemrkqaqdfgvkflqaevldv.dlegdiktvkta 97
t+e+yd+++iG+Gpagl++ iy++ra lk++i e+ GG++ +t ++nyPg i+G++l+++m qa +++ v ++ ++di ++ a
MMSYN1_0819 5 TNEIYDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPGGKLIKTDLIENYPGFETIQGPDLASKMYLQALSLNASVEFVGVNSIfKNADDIFEISLA 102
689*******************************************************************988766555556554266899*****99 PP
TIGR03143 98 kgdl.kalavliatGasprklGfeGeeeftGrGvaycatcdGefftGldvlviGgGfaaaeeavfltkyakkvtvivrepdftcakaiaekvkanPki 194
+g+ ka+av++atG+ klG +Ge+e G+Gv+yca cdG f++ + v v+GgG++a +ea++l++ kv +ivr + f ++ +k ka+P +
MMSYN1_0819 103 NGETkKAYAVILATGTQENKLGIKGEDELYGKGVSYCAVCDGAFYKNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVRRDVFRADANKVAKLKAQPNV 200
9875279******************************************************************************************* PP
TIGR03143 195 evkfnvelkevtGddvlreakfvnnatGeeteykakkdegtfGvfvfvGyvPsselfkgkvelderGyvvtnedletnveGvyaaGdlrvkelrqvvt 292
e + ++ke+ G +++++ ++ Ge++ + +f ++G +P + +k+ +e+Gy++tn++++t+++G+++aGd+r lrq+
MMSYN1_0819 201 EFLLKSQVKEIHGTEKVESLTITTP-NGEKK---LE----VSAIFPYIGSTPLIDSVKHLCIENEKGYIPTNDKMQTEIKGLFVAGDVRDVPLRQIAI 290
*****************99887654.44432...22....346***************9999999********************************* PP
TIGR03143 293 avadGaiaateleryvkelk 312
a dGaia + yv+e k
MMSYN1_0819 291 ACGDGAIAGQMAVEYVQEIK 310
****************9875 PP
>> TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 236.7 2.4 1e-72 1e-70 209 512 .. 5 306 .. 1 308 [. 0.93
Alignments for each domain:
== domain 1 score: 236.7 bits; conditional E-value: 1e-72
TIGR03140 209 ekekydvlvvGgGPagaaaaiyaarkGlkvalvaeri.GGqvkdtvgienlisvkettGsklaanleehikeynidvleeqkvkkie.teeeakevel 304
+ e ydv+++G+GPag ++aiy+ar Glk+ + + GG+ t ien+ + ++++G+ la+++ + n +v e + v++i ++++ e++l
MMSYN1_0819 5 TNEIYDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSApGGKLIKTDLIENYPGFETIQGPDLASKMYLQALSLNASV-EFVGVNSIFkNADDIFEISL 101
5688**************************998776449*************************9876665555554.5667777753789999**** PP
TIGR03140 305 esGevlkaksvivatGakWrelgvpGekeylgkGvayCphCdGPlfkgkkvaviGGGnsGieaaidlaGivehvtvlefadelkadkvlveklkslsn 402
++Ge+ ka +vi+atG + +lg++Ge+e gkGv+yC+ CdG ++k+k vav+GGG s ++ a+ l+ +v++v ++ d ++ad+ v klk ++n
MMSYN1_0819 102 ANGETKKAYAVILATGTQENKLGIKGEDELYGKGVSYCAVCDGAFYKNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVRRDVFRADANKVAKLKAQPN 199
************************************************************************************************** PP
TIGR03140 403 vdiltsaktkeivgdgdkvtglkykdrsseeekkleldGvfvqiGlvpnteflkdavelnrrGeividergrtsvkGifaaGdvttvpykqiiiamGe 500
v+ l++++ kei g+ +kv++l+++ + ekkle++ +f iG p + +k++ n++G i ++ + +t++kG+f aGdv +vp +qi ia G+
MMSYN1_0819 200 VEFLLKSQVKEIHGT-EKVESLTITT--PNGEKKLEVSAIFPYIGSTPLIDSVKHLCIENEKGYIPTNDKMQTEIKGLFVAGDVRDVPLRQIAIACGD 294
**************9.9*****9975..567899**********************99**************************************** PP
TIGR03140 501 Gakaalsafdyl 512
Ga a a +y+
MMSYN1_0819 295 GAIAGQMAVEYV 306
****99999985 PP
>> TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.9 0.1 1.6e-07 1.5e-05 1 32 [. 10 41 .. 10 62 .. 0.84
2 ! 57.4 0.4 2.5e-18 2.4e-16 89 289 .. 82 281 .. 70 308 .. 0.80
Alignments for each domain:
== domain 1 score: 21.9 bits; conditional E-value: 1.6e-07
TIGR04018 1 dviiiGaGPiGlaaaieakkaglsyliiekga 32
dviiiG+GP Gl++ai + +agl+++i e++a
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKTVIYEQSA 41
89**************************9864 PP
== domain 2 score: 57.4 bits; conditional E-value: 2.5e-18
TIGR04018 89 lyeevekvkkke.ekfevkt.ekeeyeakkvvvatGyydipnllnvpGedl..pkvshyyk..eahpyvkqkvvvvGgknsavdaalelyrkgaevtl 180
+ v+++ k++ + fe++ + e+ +a +v++atG + n+l+++Ged k y + y ++ v+vvGg sav+ a+ l + +v l
MMSYN1_0819 82 EFVGVNSIFKNAdDIFEISLaNGETKKAYAVILATGT--QENKLGIKGEDElyGKGVSYCAvcDGAFYKNKPVAVVGGGYSAVQEAMYLSQLVDKVYL 177
477888888877589***984667899*********7..7799******963345556653338999******************************* PP
TIGR04018 181 vvrgeelsekvkyWvkpdlenrikegkikalfesevkeiee....esvtletpegeveeiendfvlaltGyrpdlelleklgveleedekipvydeet 274
+vr++ +++ + + ++ ++++l++s+vkei+ es+t++tp+ge+ ++e ++ +G +p ++ +++l +e e+ ip+ +++
MMSYN1_0819 178 IVRRDVFRADANK-----VAKLKAQPNVEFLLKSQVKEIHGtekvESLTITTPNGEK-KLEVSAIFPYIGSTPLIDSVKHLCIENEKG-YIPT--NDK 266
*****99998654.....455556778999999999999752122578999****99.***********************9998777.4665..456 PP
TIGR04018 275 mEtnveglylaGvva 289
m t+++gl++aG v
MMSYN1_0819 267 MQTEIKGLFVAGDVR 281
99**********986 PP
>> TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.0 0.3 5.3e-10 5.1e-08 2 38 .. 9 45 .. 8 50 .. 0.95
2 ! 46.8 0.8 4.2e-15 4e-13 120 312 .. 98 284 .. 72 308 .. 0.73
Alignments for each domain:
== domain 1 score: 30.0 bits; conditional E-value: 5.3e-10
TIGR01350 2 ydvvviGgGpgGYvaAiraaqlglkvalvekeklGGt 38
ydv++iG+Gp+G ++Ai +a++glk+++ e++ GG
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPGGK 45
9**********************************96 PP
== domain 2 score: 46.8 bits; conditional E-value: 4.2e-15
TIGR01350 120 evkkekkekkleakniiiAtGseprelplk.....leedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldae 212
e++ ++ ++ +a ++i+AtG++ ++l +k + ++ ++a+ + + +++vGgG+ v a+ +++l kv +i d + a ++
MMSYN1_0819 98 EISLANG-ETKKAYAVILATGTQENKLGIKgedelYGKGVSYCAVCDGAFY---KNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVRRD-VFRADANK 190
3444443.477999*************999765533333334445555554...445689**********************9997665.44444333 PP
TIGR01350 213 vskvlkkklkkkgvkiltnakvtevekeed..evvveakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDv 308
v +k + +v++l +++v+e++ +e+ ++++++ ++ +++le+ +++ +G +p ++ +++l +e ++ g+i+++++++t+++g+++ GDv
MMSYN1_0819 191 V----AKLKAQPNVEFLLKSQVKEIHGTEKveSLTITTPNG-EKKLEVSAIFPYIGSTPLID--SVKHLCIENEK-GYIPTNDKMQTEIKGLFVAGDV 280
3....34445678**********887666511555665555.59******************..9*******655.********************** PP
TIGR01350 309 igkl 312
+ +
MMSYN1_0819 281 RDVP 284
8754 PP
>> TIGR02053 MerA: mercury(II) reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.6 0.2 5.9e-05 0.0057 1 36 [. 9 44 .. 9 49 .. 0.93
2 ! 53.3 0.5 5.3e-17 5.1e-15 93 329 .. 70 303 .. 61 309 .. 0.79
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 5.9e-05
TIGR02053 1 ydlviiGsGaaafaaaikaaelgakvvlverGilGG 36
yd++iiGsG a++++ai a+ g k v+ e+ GG
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPGG 44
9***************************99998888 PP
== domain 2 score: 53.3 bits; conditional E-value: 5.3e-17
TIGR02053 93 KYedvlesydavdllegkakfkdek.tvkvdl.gkevvgakrvliAtGarpavPeipGLkeae.....yltseelleldkip..eslvviGggaiavE 181
Y + l+ +v+++ ++ fk++ + ++ l + e+ +a +v++AtG++ ++ i G +e+ y ++ + ++v+Ggg+ av
MMSYN1_0819 70 MYLQALSLNASVEFVGVNSIFKNADdIFEISLaNGETKKAYAVILATGTQENKLGIKGEDELYgkgvsY----CAVCDGAFYknKPVAVVGGGYSAVQ 163
577777777778888888889876524455554444555555*****************9997654442....33332222222679*********** PP
TIGR02053 182 laqlfarlGsevtllqrserllkeeepeisaaveellaeeGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLnLekvg 279
a + +l +v l+ r + ++ + ++ v +l a+ ve++ +++vk+++ + ++ + +t+++++++k++e+++++ G +p +d ++++
MMSYN1_0819 164 EAMYLSQLVDKVYLIVRRD-VFRAD----ANKVAKLKAQPNVEFLLKSQVKEIHGT-EKVESLTITTPNGEKKLEVSAIFPYIGSTPLID--SVKHLC 253
******************8.44443....445777788999************996.79999****************************..556666 PP
TIGR02053 280 vklderGeilvdeklrtsnpkiyAAGDvikg.lqlesvAakeGvvaAenal 329
+ +e+G i ++k++t+ ++++ AGDv + l+ +A +G +a + a+
MMSYN1_0819 254 I-ENEKGYIPTNDKMQTEIKGLFVAGDVRDVpLRQIAIACGDGAIAGQMAV 303
6.579***********************98756778888999999987766 PP
>> TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.2 0.1 0.00019 0.018 3 41 .. 9 47 .. 7 53 .. 0.92
2 ! 39.4 0.3 1e-12 9.9e-11 106 318 .. 81 293 .. 65 300 .. 0.77
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 0.00019
TIGR01421 3 ydylviGGGsGGiasarraaeyGakallveekklGGtcv 41
yd+++iG G G++sa +a+ G k+++ e+ + GG +
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPGGKLI 47
********************************9999765 PP
== domain 2 score: 39.4 bits; conditional E-value: 1e-12
TIGR01421 106 velieGyaeftkde...tvev.ngkeytakhiliatGgkpsip.....eni..PGaelgldsdgffaleelPkrvvivGaGyiavelaGvlhglGskt 192
ve + + f++ + +++ ng++ +a +++atG++ +++ +++ G ++ dg f k v++vG Gy av+ a l+ l k
MMSYN1_0819 81 VEFVGVNSIFKNADdifEISLaNGETKKAYAVILATGTQENKLgikgeDELygKGVSYCAVCDGAFYK---NKPVAVVGGGYSAVQEAMYLSQLVDKV 175
55555555555444223333327888999**********99993333222211234566677777753...46799********************** PP
TIGR01421 193 dlvirrervlrsfdelisekvveelekaglevhklskvvkvektveg.klvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvde 289
l++rr+ v+r d ++kv++ + ++e + +s+v++++ t + l+it +g++ +v+++ iG p + ++ ++ +ekgyi ++
MMSYN1_0819 176 YLIVRRD-VFRA-D---ANKVAKLKAQPNVEFLLKSQVKEIHGTEKVeSLTITTPNGEKKLEVSAIFPYIGSTPLIDSVK--HLC-IENEKGYIPTND 265
*****98.5564.3...57888889999**************998875789999*******************9887654..344.459*****9999 PP
TIGR01421 290 yqntnvegiyalGdvvGkveltPvaiaaG 318
t ++g++ Gdv +v l +aia G
MMSYN1_0819 266 KMQTEIKGLFVAGDVR-DVPLRQIAIACG 293
999***********95.799999999988 PP
>> TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.4 0.1 0.96 92 2 20 .. 11 29 .. 6 41 .. 0.77
2 ! 49.6 0.3 6.3e-16 6e-14 89 285 .. 99 283 .. 78 289 .. 0.83
Alignments for each domain:
== domain 1 score: -0.4 bits; conditional E-value: 0.96
TIGR03385 2 ivivGgvaaGasaAsrvrR 20
++i+G++ aG + A R
MMSYN1_0819 11 VIIIGSGPAGLTSAIYTAR 29
7999999999998866555 PP
== domain 2 score: 49.6 bits; conditional E-value: 6.3e-16
TIGR03385 89 vvvknnktnekyeesyDkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergkevtliersekiln 186
+++ n +t++ y +il+tG + ++l i+g + + + + + + k + v+v+GgGy ++ + l + +v li r +
MMSYN1_0819 99 ISLANGETKKAYA-----VILATGTQENKLGIKG---EDELYGKGVSYCAVCDGAF--YKNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVRRD---- 182
5666777777777.....89**************...6667778888888888888..566679**********999999999999**998754.... PP
TIGR03385 187 kllDeeiakiveeelekkeielrlneevksvegeekve..vlt..s.gkvyqaDlvilavGvkPnselikssqlklgkkGaikvnekfqtsveniyai 279
++ ++ +k+ + + + ++e+ l+ +vk+++g ekve ++t + +k+ ++ ++ +G P ++ +k++ + ++kG+i++n+k+qt+++ ++++
MMSYN1_0819 183 -VFRADANKVAKLKAQP-NVEFLLKSQVKEIHGTEKVEslTITtpNgEKKLEVSAIFPYIGSTPLIDSVKHL-CIENEKGYIPTNDKMQTEIKGLFVA 277
.4677877776666555.5******************966665332245678999999*************4.44589******************** PP
TIGR03385 280 GDvaes 285
GDv ++
MMSYN1_0819 278 GDVRDV 283
**9765 PP
>> TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.8 0.0 6.9e-07 6.6e-05 135 172 .. 10 46 .. 3 53 .. 0.88
2 ? -0.8 0.0 1.3 1.2e+02 375 394 .. 108 127 .. 91 136 .. 0.71
3 ! 6.9 0.1 0.0057 0.54 268 340 .. 145 216 .. 134 219 .. 0.73
4 ! 17.4 0.0 3.7e-06 0.00035 353 448 .. 210 305 .. 196 306 .. 0.78
Alignments for each domain:
== domain 1 score: 19.8 bits; conditional E-value: 6.9e-07
TIGR01316 135 kvaviGaGpaGlavaselakkGhevtvfealhkpGGvl 172
v +iG+GpaGl+ a +a++G + ++e pGG l
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKTVIYEQ-SAPGGKL 46
5899*************************7.5688765 PP
== domain 2 score: -0.8 bits; conditional E-value: 1.3
TIGR01316 375 eadavivaiGqeankiiaed 394
+a avi+a G++ nk+ ++
MMSYN1_0819 108 KAYAVILATGTQENKLGIKG 127
56778888888888876554 PP
== domain 3 score: 6.9 bits; conditional E-value: 0.0057
TIGR01316 268 pvevgkkvvviGgGntavdaartalrlGaevhvvyrrtredmtareeeikhae.eeGvkfefllqpveviGdee 340
+ k v v+GgG+ av a+ +l +v ++ rr a +++++++ + v+f q e+ G e+
MMSYN1_0819 145 AFYKNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVRRDVF--RADANKVAKLKaQPNVEFLLKSQVKEIHGTEK 216
5677899**************9999999999999987644..34444455444134566666667777777776 PP
== domain 4 score: 17.4 bits; conditional E-value: 3.7e-06
TIGR01316 353 lqeerdsgekrkvpvtdeevkleadavivaiGqeankiiaedsslkt.skrGtivvdedletsieGvfaGGdvirGe.atvilalgdGkraakaidey 448
++ e ++++++ e kle+ a+ iG ++i +l + +++G i +++++t+i+G+f Gdv ++ +a gdG a ++ ey
MMSYN1_0819 210 EIHGTEKVESLTITTPNGEKKLEVSAIFPYIGS--TPLIDSVKHLCIeNEKGYIPTNDKMQTEIKGLFVAGDVRDVPlRQIAIACGDGAIAGQMAVEY 305
44445666778899**************99*96..5788777766652789*********************98765145668999999998887777 PP
>> TIGR00292 TIGR00292: thiazole biosynthesis enzyme
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.2 0.0 6e-10 5.7e-08 22 58 .. 9 44 .. 2 51 .. 0.89
2 ? 4.1 0.0 0.058 5.5 19 53 .. 147 181 .. 138 185 .. 0.86
Alignments for each domain:
== domain 1 score: 30.2 bits; conditional E-value: 6e-10
TIGR00292 22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGG 58
Dvii+G+Gp+GLt+a y a++glk+v+ e++ a+GG
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQS-APGG 44
6****************************987.6666 PP
== domain 2 score: 4.1 bits; conditional E-value: 0.058
TIGR00292 19 yaesDviivGaGpsGLtaayylakeglkvvvlerk 53
y + v++vG+G s + a yl++ kv ++ r+
MMSYN1_0819 147 YKNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVRR 181
556779*****************999999887665 PP
>> TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.2 0.7 2.5e-11 2.4e-09 535 831 .. 6 298 .. 1 306 [. 0.72
Alignments for each domain:
== domain 1 score: 33.2 bits; conditional E-value: 2.5e-11
TIGR03315 535 sekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvkn.ii...Pefr......isaeviqkdlel...vkkkGvefklGvsed...ltvde 616
+e v +iG+GPaGl+++ + araGl+ ++e+++ g +k+ +i P f +++++ + l l v++ Gv+ + +d +++++
MMSYN1_0819 6 NEIYDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPGGKLIKTdLIenyPGFEtiqgpdLASKMYLQALSLnasVEFVGVNSIFKNADDifeISLAN 103
5667899*********************9999999988888875255333555322222244455555555544467778875555444411145555 PP
TIGR03315 617 lkkegykyvvlaiGadkssklklkegnervlksleflkefkedktklklGkrvvvvGgGntamdaaraalrvpGvekvtvvyrrtkkemPaskeelee 714
+ v+la+G++ ++kl +k+++e k +++ + + k v+vvGgG a+ a + v+kv ++ rr a+k +
MMSYN1_0819 104 GETKKAYAVILATGTQ-ENKLGIKGEDELYGKGVSYCAVCDG---AFYKNKPVAVVGGGYSAVQEAMYLSQ--LVDKVYLIVRRDVFRADANKVAKLK 195
55555567999*9986.5789*****99999****9987654...4667899**********998776655..59*********98887777654444 PP
TIGR03315 715 aledGvefkellsPekfedgklvcekmklgekdasGrrrpvetgelveleadaviaavGeqvdtellkklgieldekgkvvvneetketsvtnvfviG 812
+ vef l+s +k +g+ ++e +++ ++ G + +le+ a+ +G + +k+l ie ekg++ n++ +t+++++fv+G
MMSYN1_0819 196 -AQPNVEFL-LKSQVKEIHGTEKVESLTITTPN--GEK---------KLEVSAIFPYIGSTPLIDSVKHLCIEN-EKGYIPTNDK-MQTEIKGLFVAG 278
.44567775.44444444677777777776664..433.........58999********************96.5666667766.79********** PP
TIGR03315 813 dakkGPa.tiveaiadgrka 831
d++ P i a +dg a
MMSYN1_0819 279 DVRDVPLrQIAIACGDGAIA 298
***99962566677776555 PP
>> TIGR01372 soxA: sarcosine oxidase, alpha subunit family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.2 0.1 6.2e-11 5.9e-09 166 424 .. 6 246 .. 2 306 .. 0.71
Alignments for each domain:
== domain 1 score: 32.2 bits; conditional E-value: 6.2e-11
TIGR01372 166 nahcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllseaetidGkpaaewiaetvaeLealdevtlltrttvfgyydenllgllervtdhl 263
n Dv+++G+GpaGL++A araG++ ++ eq++ GG+l + ++ i+ p+ e i+ +L+++ l+ ++++ + + + + d +
MMSYN1_0819 6 NEIYDVIIIGSGPAGLTSAIYTARAGLKTVIY-EQSAPGGKLIK-TDLIENYPGFETIQG--PDLASKM---YLQALSLNASVEFVGVNSIFKNADDI 96
5667************************9987.67899**9976.578999999998875..5666655...45555555554433333333444444 PP
TIGR01372 264 depa.kgvprerlwrvrakrvvlAtGAlErplvfannDrPGvmlAgAartY..lnrygvavgkrivvatnndsayevaadlkeaGlavvaiv..DaRe 356
e + ++ + +a v+lAtG E +l ++ D + g +Y + + k ++v+ sa + a+ l++ +v iv D+ +
MMSYN1_0819 97 FEISlANGETK-----KAYAVILATGTQENKLGIKGEDE---LY-GKGVSYcaVCDGAFYKNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVrrDVFR 185
44442222222.....56779***************997...33.333333114455667788899999999*******9999987888887555544 PP
TIGR01372 357 kvspelaaeareagvevikgsavaategkkrvesvkvarvdlstaesgaeeeleaDallvsgGwsPvv 424
+++a+ ++ +ve + +s v + +g ++ves+++++ ++e++le+ a+ G +P +
MMSYN1_0819 186 ADANKVAKLKAQPNVEFLLKSQVKEIHGTEKVESLTITT-------PNGEKKLEVSAIFPYIGSTPLI 246
444455555556899*********************993.......3344677777777777777766 PP
>> TIGR01438 TGR: thioredoxin and glutathione reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.4 0.1 0.00053 0.051 3 36 .. 9 42 .. 7 49 .. 0.89
2 ! 26.2 1.0 8.4e-09 8e-07 119 334 .. 78 292 .. 67 304 .. 0.70
Alignments for each domain:
== domain 1 score: 10.4 bits; conditional E-value: 0.00053
TIGR01438 3 ydliviGgGsGGlaaakeaaklgakvllldfvkp 36
yd+i+iG+G+ Gl++a +a g k ++ + p
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAP 42
9**********************99999887766 PP
== domain 2 score: 26.2 bits; conditional E-value: 8.4e-09
TIGR01438 119 nayaelvdkdvikatdk......kkkeeilsakrvliatGlrpkypddieGakel...sitsddlfslkkvpGk.tlvvGasyvalecaGflaalgld 206
na e+v+ + i + + + e+ a v++atG++ + ++ i+G+ el +++ + + k vvG++y a++ a +l+ l +
MMSYN1_0819 78 NASVEFVGVNSIFKNADdifeisLANGETKKAYAVILATGTQENKLG-IKGEDELygkGVSYCAVCDGAFYKNKpVAVVGGGYSAVQEAMYLSQLVDK 174
5555555555443322223333356677888999***********97.***999644434444444333333331579******************** PP
TIGR01438 207 vtvlvrsillrGfdqdcavkvkeylkeqGvkfkeqvlpkkvekveakvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkilad 304
v ++vr ++r d a+kv + + v f + ++k ++ e+ + t + + e +++ iG ++ +++++ + +++++g i+++
MMSYN1_0819 175 VYLIVRRDVFRA-D---ANKVAKLKAQPNVEFLLKSQVKEIHGTEKVESLTITTPNGEKKLEVSAIFPYIGSTPLIDSVK----HLCIENEKGYIPTN 264
******988875.4...5566655566677777766666666666655555564444456677788889*******9986....57789999****** PP
TIGR01438 305 elertnvpsiyavGdivedkleltpvaika 334
+ +t++++++ Gd+ + l +ai +
MMSYN1_0819 265 DKMQTEIKGLFVAGDVRDVP--LRQIAIAC 292
***************97654..44444444 PP
>> TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.6 0.1 0.00037 0.036 3 39 .. 9 45 .. 8 50 .. 0.94
2 ! 24.0 0.3 3.3e-08 3.2e-06 94 314 .. 69 291 .. 65 305 .. 0.74
Alignments for each domain:
== domain 1 score: 10.6 bits; conditional E-value: 0.00037
TIGR01424 3 ydlfviGaGsGGvraarlaaalGakvaiaeedlvGGt 39
yd+ +iG+G G+ +a ++a G k i e+ GG
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPGGK 45
9******************************999996 PP
== domain 2 score: 24.0 bits; conditional E-value: 3.3e-08
TIGR01424 94 glykklla.kagvellegraelvdantv.evle.dgktytaekiliavGgrpvkpelPGae........laitsdeafdletlPksilvvGgGyiave 180
++y + l +a+ve++ ++ +a+++ e+ +g+t a +++a+G++ k + G + ++ d af k ++vvGgGy av+
MMSYN1_0819 69 KMYLQALSlNASVEFVGVNSIFKNADDIfEISLaNGETKKAYAVILATGTQENKLGIKGEDelygkgvsYCAVCDGAFY---KNKPVAVVGGGYSAVQ 163
5666666447888888777777666654255434799999*********999876655432221111227777888885...34679*********** PP
TIGR01424 181 fagifrGlGvkvtllyrgekilrgfdddvraelaeeleerGirillktvlksiekvddG..lkvtls.kdeeivadvvllatGrvPnvkglgleaaGv 275
a + l kv l++r++ + d + ++a+ + ++ llk+ +k+i+ +++ l +t+ +++++ +++ +G +P ++ + + +
MMSYN1_0819 164 EAMYLSQLVDKVYLIVRRDVF--RADAN---KVAKLKAQPNVEFLLKSQVKEIHGTEKVesLTITTPnGEKKLEVSAIFPYIGSTPLIDSVK--HLCI 254
*****************9853..33444...34444456789999999999998777554366766624567899999999*****999764..4455 PP
TIGR01424 276 elndagaiavdeysrtsvpsiyavGdvtdrinltPvaik 314
e n++g i ++ +t++++++ Gdv d + l +ai
MMSYN1_0819 255 E-NEKGYIPTNDKMQTEIKGLFVAGDVRD-VPLRQIAIA 291
4.899**********************98.667777765 PP
>> TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.4 0.1 2.4e-07 2.3e-05 145 249 .. 10 128 .. 4 141 .. 0.59
2 ! 9.3 0.0 0.0011 0.11 356 455 .. 176 282 .. 159 305 .. 0.64
Alignments for each domain:
== domain 1 score: 21.4 bits; conditional E-value: 2.4e-07
TIGR01317 145 kvavvGsGPaGlaaadqlnraGhtvtvferedrvGGllryGi....Pnlkldke.iverr..idlle.aeGvdfvtnveiG........kdisaeelk 226
v ++GsGPaGl++a +raG + ++e++ G l++ + P + + + + ++ l+ + v+fv i +++ e k
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPGGKLIKTDLienyPGFETIQGpDLASKmyLQALSlNASVEFVGVNSIFknaddifeISLANGETK 107
5889**************************99988888765411113333222112222201333331234555544444455554432333333444 PP
TIGR01317 227 edfdavvlatGatkprdlpieGr 249
+ + av+latG++++ +l i+G
MMSYN1_0819 108 KAY-AVILATGTQEN-KLGIKGE 128
443.67777776543.4666665 PP
== domain 2 score: 9.3 bits; conditional E-value: 0.0011
TIGR01317 356 ysiatkelvgddeGkvkavrtv.eve.....lkkdedGkyeleev....pgseevleadlvllalGfvgpeqallddlgvdkdergnikaeldesets 443
y+i +++ d kv ++++ +ve ++k+ +G ++e + p+ e+ le ++ +G + p +++l ++ +e+g i ++d+ +t+
MMSYN1_0819 176 YLIVRRDVFRADANKVAKLKAQpNVEfllksQVKEIHGTEKVESLtittPNGEKKLEVSAIFPYIGST-PLIDSVKHLCIE-NEKGYI-PTNDKMQTE 270
55555555555555666555532333111112344455544443311225667777777777777754.555666777787.789999.7889999** PP
TIGR01317 444 idGvfaaGdarr 455
i+G f+aGd+r
MMSYN1_0819 271 IKGLFVAGDVRD 282
*********984 PP
>> TIGR00275 TIGR00275: flavoprotein, HI0933 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.8 0.3 3.5e-07 3.3e-05 1 35 [. 11 45 .. 11 49 .. 0.88
2 ! 9.1 0.0 0.0013 0.13 128 159 .. 85 118 .. 69 130 .. 0.85
3 ? -1.1 0.0 1.6 1.5e+02 118 148 .. 197 231 .. 185 246 .. 0.68
4 ? -1.3 0.0 1.8 1.7e+02 365 380 .. 269 283 .. 264 284 .. 0.79
Alignments for each domain:
== domain 1 score: 20.8 bits; conditional E-value: 3.5e-07
TIGR00275 1 viiiGgGaaGlmaAitaaeegakVlllEknkkigk 35
viiiG G+aGl++Ai a++g+k +++E++ gk
MMSYN1_0819 11 VIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPGGK 45
79**************************9876555 PP
== domain 2 score: 9.1 bits; conditional E-value: 0.0013
TIGR00275 128 kvksi.kkeeekfevet.ekkeleakkvilatGg 159
v+si k+ +++fe+++ ++++ +a +vilatG
MMSYN1_0819 85 GVNSIfKNADDIFEISLaNGETKKAYAVILATGT 118
5899999**********99**************8 PP
== domain 3 score: -1.1 bits; conditional E-value: 1.6
TIGR00275 118 elgvevlteskvksikkeeek..fevet..ekkel 148
+ +ve+l++s+vk+i+ +e+ ++++t ++k+l
MMSYN1_0819 197 QPNVEFLLKSQVKEIHGTEKVesLTITTpnGEKKL 231
45799999999999955554411566665444444 PP
== domain 4 score: -1.3 bits; conditional E-value: 1.8
TIGR00275 365 sklvkglYfaGEvlDv 380
+ +kgl++aG v Dv
MMSYN1_0819 269 TE-IKGLFVAGDVRDV 283
44.59*******9887 PP
>> TIGR02032 GG-red-SF: geranylgeranyl reductase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.4 0.1 3.1e-09 3e-07 1 44 [. 9 52 .. 9 92 .. 0.89
2 ? -1.4 0.0 3.8 3.6e+02 5 37 .. 154 186 .. 151 237 .. 0.50
Alignments for each domain:
== domain 1 score: 28.4 bits; conditional E-value: 3.1e-09
TIGR02032 1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelprekeCggal 44
yDv+++G GpaG + A ++a++Gl++++ e+++ +++ ++++
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPGGKLIKTDLI 52
9******************************9887776666666 PP
== domain 2 score: -1.4 bits; conditional E-value: 3.8
TIGR02032 5 vvGaGpaGssaAlrlakkGlrVlllekkelpre 37
vvG+G + A +l++ +V l+ +++ r+
MMSYN1_0819 154 VVGGGYSAVQEAMYLSQLVDKVYLIVRRDVFRA 186
555555555555555555555555444444333 PP
>> TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.7 0.1 1.8e-08 1.7e-06 381 536 .. 10 181 .. 3 223 .. 0.66
Alignments for each domain:
== domain 1 score: 24.7 bits; conditional E-value: 1.8e-08
TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtllereeelGGqvkl...aaklpgreela..elvrdlaselkelgvevk.lGvea...daelv........la 461
v+++G+GPaGl++a+ ar G + +++e+ ++GG++ + + pg e ++ +l ++++ + +l +v+ +Gv++ +a+++ +
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKTVIYEQS-APGGKLIKtdlIENYPGFETIQgpDLASKMYLQALSLNASVEfVGVNSifkNADDIfeislangET 106
69*************************9975.789988650114455555544433344444444433333333234332111122221112222245 PP
TIGR03997 462 ekPDavvlatGsrparpdlagadse..rvvtvrevltgeaevggrvlvvDelGfhqatsvaellaargkkveiitsa 536
+k av+latG++ ++ + g+d+ + v+ v +g+ ++ v vv G + a + a +l + + kv++i
MMSYN1_0819 107 KKAYAVILATGTQENKLGIKGEDELygKGVSYCAVCDGAFYKNKPVAVVG--GGYSAVQEAMYLSQLVDKVYLIVRR 181
67789999999999999999966532255677888888888888888874..7788888888888888888877654 PP
>> TIGR03452 mycothione_red: mycothione reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.9 0.1 0.2 19 2 44 .. 8 52 .. 7 96 .. 0.68
2 ? 0.3 0.0 0.61 58 237 267 .. 92 122 .. 65 138 .. 0.84
3 ! 20.3 0.0 5.1e-07 4.9e-05 127 305 .. 104 281 .. 95 293 .. 0.78
Alignments for each domain:
== domain 1 score: 1.9 bits; conditional E-value: 0.2
TIGR03452 2 hydliiiGtGsG..nsilderfedkriaivekGtfGGtclnvGci 44
yd+iiiG+G s + + + + i e+ + GG + i
MMSYN1_0819 8 IYDVIIIGSGPAglTSAIYTARAGLKTVIYEQSAPGGKLIKTDLI 52
59*******964133444445555667799999999987776555 PP
== domain 2 score: 0.3 bits; conditional E-value: 0.61
TIGR03452 237 qdddgvtlelddGstveadvllvatGrvpng 267
+ dd ++l +G+t +a +++atG ++n
MMSYN1_0819 92 NADDIFEISLANGETKKAYAVILATGTQENK 122
4566678999****************99885 PP
== domain 3 score: 20.3 bits; conditional E-value: 5.1e-07
TIGR03452 127 geeitadqvviaaGsrpv...i..peaiaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserftel 219
ge+ a v++a+G++ i ++ + gv+y + d ++ p + +vGgGy a++ a +s l kv l++r + + ++d++ +++++ +
MMSYN1_0819 104 GETKKAYAVILATGTQENklgIkgEDELYGKGVSYCAVCDGAFYKNKP--VAVVGGGYSAVQEAMYLSQLVDKVYLIVRRD--VFRADANKVAKLKAQ 197
555556666666665543111222355566666666666655555555..6799**************************9..45789999999**** PP
TIGR03452 220 akkkfdvrlgrnvtaaeqdddgvtlelddGs.tveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvs 305
+ +f ++++ + + ++++ + +t+++ +G+ ++e ++ +G +p d + ++ +e e+g + ++ +t ++g+f Gdv
MMSYN1_0819 198 PNVEFLLKSQVKEIHGTEKVESLTITTPNGEkKLEVSAIFPYIGSTPLIDSV--KHLCIEN-EKGYIPTNDKMQTEIKGLFVAGDVR 281
*********99999999999*******9996268899999999999998876..5667998.9999***9999************95 PP
>> TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.4 0.0 0.00018 0.017 1 28 [. 9 36 .. 9 41 .. 0.92
2 ? 2.0 0.0 0.13 12 121 152 .. 87 118 .. 72 133 .. 0.85
3 ? 4.5 0.0 0.022 2.1 3 56 .. 152 210 .. 150 219 .. 0.80
4 ? -2.0 0.0 2 1.9e+02 354 389 .. 269 306 .. 263 309 .. 0.66
Alignments for each domain:
== domain 1 score: 11.4 bits; conditional E-value: 0.00018
TIGR00136 1 fdviviGaGhaGieaalaaarlgaktll 28
+dvi+iG+G aG+ +a+ +ar g+kt +
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVI 36
69***********************987 PP
== domain 2 score: 2.0 bits; conditional E-value: 0.13
TIGR00136 121 dliledndevkGvvtkdgaklrakavilttGt 152
+ i ++ d + +++++g++ +a avil+tGt
MMSYN1_0819 87 NSIFKNADDIFEISLANGETKKAYAVILATGT 118
45677789999********************9 PP
== domain 3 score: 4.5 bits; conditional E-value: 0.022
TIGR00136 3 viviGaGhaGieaalaaarlgaktlllt......lnldtigklsCnPaiGGlakgilvke 56
v v+G+G++ + a+ ++l k+ l++ + ++++kl P + l k+++ ke
MMSYN1_0819 152 VAVVGGGYSAVQEAMYLSQLVDKVYLIVrrdvfrADANKVAKLKAQPNVEFLLKSQV-KE 210
78***********************99833333246788999998888888888774.55 PP
== domain 4 score: -2.0 bits; conditional E-value: 2
TIGR00136 354 kkikgLflaGqinGtt..GYeeaaaqGllaGinaalkl 389
+ikgLf+aG + a + G +aG a+ ++
MMSYN1_0819 269 TEIKGLFVAGDVRDVPlrQIAIACGDGAIAGQMAVEYV 306
5799******9987651133445567777777666655 PP
>> TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.1 0.0 3.9e-06 0.00037 138 177 .. 5 44 .. 1 53 [. 0.83
2 ? 0.7 0.0 0.37 35 282 357 .. 149 222 .. 142 233 .. 0.72
3 ? -0.4 0.0 0.83 79 415 459 .. 259 298 .. 244 307 .. 0.68
Alignments for each domain:
== domain 1 score: 17.1 bits; conditional E-value: 3.9e-06
TIGR01318 138 kktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiG 177
+++ v +iG+GpaGl+ a araG k+v++++ G
MMSYN1_0819 5 TNEIYDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPGG 44
55666799*************************9876555 PP
== domain 2 score: 0.7 bits; conditional E-value: 0.37
TIGR01318 282 GkrvvvlGGGdtamdcvrtairlgakkvtcvyrrdeanmpGsrrevanareeGvefkfnvqpleievdedgkvsgv 357
k v v+GGG +a++ + + kv + rrd + + + vef+++ q ei+ e+ ++ ++
MMSYN1_0819 149 NKPVAVVGGGYSAVQEA-MYLSQLVDKVYLIVRRDVFRADANKV-AKLKAQPNVEFLLKSQVKEIHGTEKVESLTI 222
57788999998887643.35677788999999999776554443.3333456799999999999988887766655 PP
== domain 3 score: -0.4 bits; conditional E-value: 0.83
TIGR01318 415 GrivaaeeselayqtsnpkifaGGdivrGadlvvtavaeGrkaae 459
G i ++ ++qt+ + +f Gd+ r l a+a G a
MMSYN1_0819 259 GYIPTN----DKMQTEIKGLFVAGDV-RDVPLRQIAIACGDGAIA 298
555544....6899***********6.556676667766655543 PP
>> TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.0 2.5 2.4e+02 145 178 .. 8 50 .. 2 126 .. 0.57
2 ! 21.2 0.0 3.8e-07 3.6e-05 135 282 .. 138 281 .. 98 287 .. 0.77
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 2.5
TIGR03169 145 kakvaviGgGvaGvElalamahr.lkealke........aevt 178
++v +iG+G aG a+ +a + lk++ e ++
MMSYN1_0819 8 IYDVIIIGSGPAGLTSAIYTARAgLKTVIYEqsapggklIKTD 50
5678899999888776665544335554433344444444444 PP
== domain 2 score: 21.2 bits; conditional E-value: 3.8e-07
TIGR03169 135 llekakqe.kqkakvaviGgGvaGvElalamahrlkealkeaevtliergeellsglnakvrkklekalkekgvelleeaevaevteeavrledgeel 231
+++ + +++ vav+GgG ++v a+ +++ + +++ ++ +++++++ +++ k++ ++e lk++ e++ ++v ++t ++ +++++l
MMSYN1_0819 138 YCAVCDGAfYKNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVRRDVFRADANKVAK--LKAQPNVEFLLKSQVKEIHGTEKVESLTITT--PNGEKKL 231
555444444677889********************************999887555..5667778888888888888888887777654..4566788 PP
TIGR03169 232 eadlvlgvagaraq.kwlaesgleldekGfievdetLqslsdpeifAaGDvA 282
e+++++ g+++ + +++ +e + kG+i ++++q+ + + +f aGDv
MMSYN1_0819 232 EVSAIFPYIGSTPLiDSVKHLCIENE-KGYIPTNDKMQT-EIKGLFVAGDVR 281
88889888888875267888888877.************.8899******96 PP
>> TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.4 0.0 0.00014 0.013 1 33 [. 9 41 .. 9 49 .. 0.92
2 ! 7.1 0.1 0.0059 0.56 92 191 .. 81 179 .. 69 193 .. 0.74
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 0.00014
TIGR04046 1 lpvviiGaGqaGlsvsyllkkkgvdhvvlekkt 33
++v+iiG+G aGl+ + + ++g++ v+ e++
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSA 41
68****************************976 PP
== domain 2 score: 7.1 bits; conditional E-value: 0.0059
TIGR04046 92 regveveklkkaeaggfavetsagel.tadqvvvatggyhtpaipklaerlpadvkqlhseeyrnaeqlpdGavlvvGsGqsGaqiaedlhlagrkvh 188
+e v v+++ k++ + f+++ ++ge+ +a +v++atg+ ++ k ++l + + + + + + +v vvG G s +q a l kv+
MMSYN1_0819 81 VEFVGVNSIFKNADDIFEISLANGETkKAYAVILATGTQENKLGIKGEDELYGK--GVSYCAVCDGAFYKNKPVAVVGGGYSAVQEAMYLSQLVDKVY 176
4778999**9998889***97777652688999999998877655555555432..3333444555666677899*******9999888888888999 PP
TIGR04046 189 lav 191
l v
MMSYN1_0819 177 LIV 179
887 PP
>> TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.3 0.0 5.9e-07 5.6e-05 1 31 [. 9 39 .. 9 73 .. 0.90
Alignments for each domain:
== domain 1 score: 20.3 bits; conditional E-value: 5.9e-07
TIGR03378 1 fDviiiGgGlaGlscalrlaeaGkktaiiaa 31
+DviiiG+G aGl++a+ a+aG kt+i +
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQ 39
9**************************9764 PP
>> TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.4 0.2 1.1e-05 0.001 1 35 [. 11 44 .. 11 47 .. 0.89
2 ? 0.2 0.0 0.92 88 230 265 .. 85 120 .. 71 128 .. 0.80
3 ? -1.1 0.1 2.3 2.2e+02 1 20 [. 152 171 .. 152 183 .. 0.79
4 ? -1.1 0.0 2.2 2.1e+02 392 405 .. 267 280 .. 265 285 .. 0.85
Alignments for each domain:
== domain 1 score: 16.4 bits; conditional E-value: 1.1e-05
TIGR03467 1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGG 35
v+++G G AGL+ A+ araG+++ ++E + GG
MMSYN1_0819 11 VIIIGSGPAGLTSAIYTARAGLKTVIYEQSA-PGG 44
89**************************874.444 PP
== domain 2 score: 0.2 bits; conditional E-value: 0.92
TIGR03467 230 rvreleasaggiralveaaeetlaadavvlAvpper 265
v+++ +a+ i + a++et +a av+lA+ ++
MMSYN1_0819 85 GVNSIFKNADDIFEISLANGETKKAYAVILATGTQE 120
56777777776666566799***********98776 PP
== domain 3 score: -1.1 bits; conditional E-value: 2.3
TIGR03467 1 vvvvGgGlAGLaAAveLara 20
v+vvGgG++ + A+ L++
MMSYN1_0819 152 VAVVGGGYSAVQEAMYLSQL 171
89******999888888775 PP
== domain 4 score: -1.1 bits; conditional E-value: 2.2
TIGR03467 392 artplpnlfLAGDw 405
+t++++lf+AGD
MMSYN1_0819 267 MQTEIKGLFVAGDV 280
589**********6 PP
>> TIGR02734 crtI_fam: phytoene desaturase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.7 0.0 1.4e-06 0.00014 1 38 [. 11 47 .. 11 69 .. 0.76
Alignments for each domain:
== domain 1 score: 18.7 bits; conditional E-value: 1.4e-06
TIGR02734 1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRag 38
+++iG+G +GL +Ai a+aG ++ + e+ +pGG+
MMSYN1_0819 11 VIIIGSGPAGLTSAIYTARAGLKTVIYEQS-APGGKLI 47
689********************9999975.7999754 PP
>> TIGR02023 BchP-ChlP: geranylgeranyl reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.2 0.0 9.9e-06 0.00094 1 49 [. 9 53 .. 9 58 .. 0.86
2 ? 0.8 0.0 0.47 45 3 32 .. 152 181 .. 150 189 .. 0.86
Alignments for each domain:
== domain 1 score: 16.2 bits; conditional E-value: 9.9e-06
TIGR02023 1 ydvlviGggpsGaaaaetLakagievillerelarikPCGGaiPlalie 49
ydv++iG+gp+G ++a+ a+ag ++++ e+ P G i lie
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQS----APGGKLIKTDLIE 53
89**************************9998....5666666666666 PP
== domain 2 score: 0.8 bits; conditional E-value: 0.47
TIGR02023 3 vlviGggpsGaaaaetLakagievillere 32
v+v+Ggg s a L + +v l+ r+
MMSYN1_0819 152 VAVVGGGYSAVQEAMYLSQLVDKVYLIVRR 181
99*****************99999887654 PP
>> TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.4 0.2 0.00061 0.058 1 34 [. 10 42 .. 10 45 .. 0.92
2 ? 6.0 0.0 0.013 1.2 170 206 .. 86 123 .. 55 132 .. 0.78
3 ? -1.5 0.0 2.5 2.4e+02 2 31 .. 152 181 .. 151 212 .. 0.77
Alignments for each domain:
== domain 1 score: 10.4 bits; conditional E-value: 0.00061
TIGR03197 1 kvavIGaGiAgaalalsLarrGvqvtllekdekl 34
+v++IG G Ag++ a ar+G++ ++e++ ++
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKTVIYEQS-AP 42
69***************************98.44 PP
== domain 2 score: 6.0 bits; conditional E-value: 0.013
TIGR03197 170 itslerdaeg.WqllsengevlaasvvVlAngaqakql 206
++s+ ++a+ ++++ +nge+ +a +v+lA+g q ++l
MMSYN1_0819 86 VNSIFKNADDiFEISLANGETKKAYAVILATGTQENKL 123
667777777779**********************9987 PP
== domain 3 score: -1.5 bits; conditional E-value: 2.5
TIGR03197 2 vavIGaGiAgaalalsLarrGvqvtllekd 31
vav+G+G + + a L++ +v l+ ++
MMSYN1_0819 152 VAVVGGGYSAVQEAMYLSQLVDKVYLIVRR 181
899999999998888888766666666555 PP
>> TIGR01813 flavo_cyto_c: flavocytochrome c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.6 0.1 3.2e-06 0.00031 1 30 [. 10 38 .. 10 50 .. 0.82
2 ? -3.4 0.0 7.2 6.8e+02 177 189 .. 105 117 .. 100 131 .. 0.82
3 ? -2.8 0.0 4.7 4.5e+02 404 417 .. 267 280 .. 263 281 .. 0.80
Alignments for each domain:
== domain 1 score: 17.6 bits; conditional E-value: 3.2e-06
TIGR01813 1 dvvvvGsGlAGlsaaleakkaglaevvvle 30
dv+++GsG AGl++a+ +agl+ v+ e
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKT-VIYE 38
8*********************555.5555 PP
== domain 2 score: -3.4 bits; conditional E-value: 7.2
TIGR01813 177 kikaakaVvlatG 189
++k+a aV+latG
MMSYN1_0819 105 ETKKAYAVILATG 117
5788999999998 PP
== domain 3 score: -2.8 bits; conditional E-value: 4.7
TIGR01813 404 sekpikgLfAaGEv 417
++ ikgLf aG+v
MMSYN1_0819 267 MQTEIKGLFVAGDV 280
45789*******98 PP
>> TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.4 0.0 9.3e-06 0.00089 3 30 .. 9 36 .. 7 43 .. 0.91
2 ? -1.9 0.0 1.7 1.6e+02 158 198 .. 82 118 .. 66 123 .. 0.72
Alignments for each domain:
== domain 1 score: 15.4 bits; conditional E-value: 9.3e-06
TIGR01816 3 fdvvvvGaGGaGlraalelakeglktav 30
+dv+++G+G aGl +a++ a++glkt +
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVI 36
9************************986 PP
== domain 2 score: -1.9 bits; conditional E-value: 1.7
TIGR01816 158 eyfaldliledgevrGvialeletGeihvfrakavvlatGG 198
e++ ++ i +++ + ++l++Ge++ +a av+latG
MMSYN1_0819 82 EFVGVNSIFKNA--DDIFEISLANGETK--KAYAVILATGT 118
555555555544..35677888889876..79999***996 PP
>> TIGR00551 nadB: L-aspartate oxidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.2 0.0 0.0011 0.1 3 32 .. 9 38 .. 7 45 .. 0.86
2 ? -1.5 0.0 1.9 1.8e+02 174 189 .. 105 120 .. 85 142 .. 0.80
3 ? 0.8 0.1 0.37 36 3 35 .. 150 183 .. 148 193 .. 0.83
4 ? 3.4 0.0 0.06 5.8 334 355 .. 259 280 .. 214 285 .. 0.85
Alignments for each domain:
== domain 1 score: 9.2 bits; conditional E-value: 0.0011
TIGR00551 3 advvviGsGaagLsaalalaekyrvvvlsk 32
dv++iGsG agL+ a+ a+++ +v+ +
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYE 38
59*****************99998777765 PP
== domain 2 score: -1.5 bits; conditional E-value: 1.9
TIGR00551 174 evlhakavvlatGGlg 189
e+ +a av+latG
MMSYN1_0819 105 ETKKAYAVILATGTQE 120
788999******9765 PP
== domain 3 score: 0.8 bits; conditional E-value: 0.37
TIGR00551 3 advvviGsGaagLsaalalaekyr.vvvlskaev 35
+ v+v+G+G +++ a+ l++ v ++ +++v
MMSYN1_0819 150 KPVAVVGGGYSAVQEAMYLSQLVDkVYLIVRRDV 183
579****************998777999988866 PP
== domain 4 score: 3.4 bits; conditional E-value: 0.06
TIGR00551 334 GGisvdaygrtevkGLYaiGev 355
G i +++ ++te+kGL+ +G+v
MMSYN1_0819 259 GYIPTNDKMQTEIKGLFVAGDV 280
77999***************87 PP
>> TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.9 0.1 0.00018 0.017 1 33 [. 10 41 .. 10 54 .. 0.88
2 ? -0.0 0.0 0.77 73 136 164 .. 91 119 .. 67 133 .. 0.83
3 ? 0.1 0.0 0.68 65 2 37 .. 152 187 .. 151 224 .. 0.77
Alignments for each domain:
== domain 1 score: 11.9 bits; conditional E-value: 0.00018
TIGR01988 1 divIvGgGlvGlalAlaLassadlkvalveaka 33
d++I+G+G++Gl+ A+ a+ + lk+ + e++a
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAG-LKTVIYEQSA 41
9******************777.9999988875 PP
== domain 2 score: -0.0 bits; conditional E-value: 0.77
TIGR01988 136 eresdaveltlsdgetleakLlvgADGan 164
++ +d e+ l++get +a ++ A G++
MMSYN1_0819 91 KNADDIFEISLANGETKKAYAVILATGTQ 119
44588999*****************9987 PP
== domain 3 score: 0.1 bits; conditional E-value: 0.68
TIGR01988 2 ivIvGgGlvGlalAlaLassadlkvalveakaaeka 37
+++vGgG+ A+ L++ d+ ++v + + ++
MMSYN1_0819 152 VAVVGGGYSAVQEAMYLSQLVDKVYLIVRRDVFRAD 187
899999999999999999877666666655555543 PP
>> TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.1 2.5e-05 0.0024 3 36 .. 10 43 .. 8 49 .. 0.90
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 2.5e-05
TIGR02733 3 svvviGaGiaGltaaallakrGlevtlleaaaqv 36
+v++iG+G aGlt+a a+ Gl+ ++e+ a
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPG 43
69***************************98754 PP
>> TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 0.0 2.4e-05 0.0023 374 534 .. 10 183 .. 3 224 .. 0.72
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 2.4e-05
TIGR03996 374 dvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvri..........aargdG.lsrlaaladwledecrrlGvelrlgaavdaeel..daar.a 457
dv+++G GpaGl +a +a +G + + e+sa G ++++ +++g+ +s++ + a l++ + +Gv+ a d e+ + + +
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKTVIYEQSAPGGKLIKTdlienypgfeTIQGPDlASKMYLQALSLNASVEFVGVNSIFKNADDIFEIslANGEtK 107
89*******************************99999973322222222234443245666667778888888888755555544444411443315 PP
TIGR03996 458 aGevvvlatGsvarplpapvdatvrvldaaevleadda.laeGpvvvidplGGpvgvavaealaarGrdvsivtpdsv 534
+ v+latG+ + l + ++ +++ d a + pv+v+ GG +v a +l+++ +v ++ + v
MMSYN1_0819 108 KAYAVILATGTQENKLGIKGEDELYGKGVSYCAVCDGAfYKNKPVAVVG--GGYSAVQEAMYLSQLVDKVYLIVRRDV 183
6678999***999999999999998888888777777757788888875..788888888888888888776555444 PP
>> TIGR01423 trypano_reduc: trypanothione-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.5 0.0 0.4 38 3 23 .. 8 28 .. 6 38 .. 0.78
2 ! 11.9 0.1 0.00014 0.014 148 206 .. 105 168 .. 89 302 .. 0.69
Alignments for each domain:
== domain 1 score: 0.5 bits; conditional E-value: 0.4
TIGR01423 3 aydlvvigagsggleagwnaa 23
yd+++ig+g gl + +a
MMSYN1_0819 8 IYDVIIIGSGPAGLTSAIYTA 28
69***********98765554 PP
== domain 2 score: 11.9 bits; conditional E-value: 0.00014
TIGR01423 148 erldaeyillatgswpqmlkiegie........lcissneafyleeapkrvltvgggyisvefagif 206
e+ +a ++latg+ ++l+i+g++ +c + afy +++ v +vgggy +v+ a +
MMSYN1_0819 105 ETKKAYAVILATGTQENKLGIKGEDelygkgvsYCAVCDGAFYKNKP---VAVVGGGYSAVQEAMYL 168
67788899*************9876333333337999999***8754...789******99877554 PP
>> TIGR01790 carotene-cycl: lycopene cyclase family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.8 0.1 0.00012 0.011 1 30 [. 10 39 .. 10 45 .. 0.88
2 ? -1.5 0.0 2.7 2.6e+02 114 140 .. 94 120 .. 66 129 .. 0.79
Alignments for each domain:
== domain 1 score: 12.8 bits; conditional E-value: 0.00012
TIGR01790 1 DliviGgGlAglaiAlelakpglrvqliea 30
D+i+iG+G+Agl A a++gl+ ++ e
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKTVIYEQ 39
9**********************9887764 PP
== domain 2 score: -1.5 bits; conditional E-value: 2.7
TIGR01790 114 vslslvecaggqriqarlVidargfka 140
+ + a+g++ +a +Vi a+g +
MMSYN1_0819 94 DDIFEISLANGETKKAYAVILATGTQE 120
455557789999***********9986 PP
>> TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.0 0.0 0.00016 0.016 3 34 .. 10 42 .. 8 46 .. 0.83
2 ? -2.9 0.0 5.5 5.2e+02 151 188 .. 86 120 .. 69 123 .. 0.68
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 0.00016
TIGR02485 3 dvlviGgGlaglCaaiearraGasvllle.aaP 34
dv++iG+G agl +ai ++raG + e +aP
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKTVIYEqSAP 42
8*********************87666652666 PP
== domain 2 score: -2.9 bits; conditional E-value: 5.5
TIGR02485 151 veriereedgratiaarlaaaderiatkavvlaaGGlg 188
v++i +++d+ i+ a++e ++ av+la+G +
MMSYN1_0819 86 VNSIFKNADDIFEIS---LANGETKKAYAVILATGTQE 120
566666555544443...36788888999999998765 PP
>> TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.9 0.1 0.00021 0.02 1 33 [. 9 41 .. 9 47 .. 0.93
2 ? -1.6 0.0 2.6 2.5e+02 155 177 .. 194 217 .. 185 229 .. 0.73
Alignments for each domain:
== domain 1 score: 11.9 bits; conditional E-value: 0.00021
TIGR03364 1 tdvvvvGaGivGlahAlaaarrGlkVtvierss 33
+dv+++G+G Gl A+ ar Glk ++ e+s+
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQSA 41
79***********************99999875 PP
== domain 2 score: -1.6 bits; conditional E-value: 2.6
TIGR03364 155 Laeekgveflwntavtev.etstv 177
L+++ +vefl++ +v+e+ t++v
MMSYN1_0819 194 LKAQPNVEFLLKSQVKEIhGTEKV 217
788999999999999999434444 PP
>> TIGR01373 soxB: sarcosine oxidase, beta subunit family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.0 0.0 0.00017 0.016 29 54 .. 7 31 .. 3 103 .. 0.85
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 0.00017
TIGR01373 29 peydviivGgGGhGlatayylakehG 54
+ ydvii+G+G Gl++a y a+ G
MMSYN1_0819 7 EIYDVIIIGSGPAGLTSAIYTARA-G 31
57******************9974.4 PP
>> TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.6 0.0 0.012 1.2 4 45 .. 10 49 .. 7 71 .. 0.81
2 ? 4.9 0.0 0.02 1.9 3 32 .. 150 179 .. 148 216 .. 0.92
Alignments for each domain:
== domain 1 score: 5.6 bits; conditional E-value: 0.012
TIGR00562 4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyT 45
+v+++G+G +GL+ a + ++ ++ v++E++ G i+T
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARA--GLKTVIYEQSAPGGKLIKT 49
89************9998877..9******998765555555 PP
== domain 2 score: 4.9 bits; conditional E-value: 0.02
TIGR00562 3 kkvvvvGgGisGLciayalekerpdvelvl 32
k v+vvGgG s + a +l+++ +v l++
MMSYN1_0819 150 KPVAVVGGGYSAVQEAMYLSQLVDKVYLIV 179
679*******************99999987 PP
>> TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.1 0.00021 0.02 1 27 [. 10 36 .. 10 42 .. 0.92
2 ? -3.2 0.0 5.4 5.1e+02 168 189 .. 99 118 .. 91 121 .. 0.71
3 ? -3.7 0.1 7.4 7.1e+02 2 29 .. 152 179 .. 152 188 .. 0.73
4 ? -3.8 0.0 8 7.6e+02 347 370 .. 263 280 .. 257 283 .. 0.67
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 0.00021
TIGR01812 1 DvvivGaGlAGlraAveaakkglkvav 27
Dv+i+G+G AGl +A+ +a++glk+++
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKTVI 36
9*********************99987 PP
== domain 2 score: -3.2 bits; conditional E-value: 5.4
TIGR01812 168 idlktgevvvlrakavvlatGG 189
i+l++ge + +a av+latG
MMSYN1_0819 99 ISLANGE--TKKAYAVILATGT 118
4455554..458999*****95 PP
== domain 3 score: -3.7 bits; conditional E-value: 7.4
TIGR01812 2 vvivGaGlAGlraAveaakkglkvavis 29
v +vG+G ++ A+ + + kv +i
MMSYN1_0819 152 VAVVGGGYSAVQEAMYLSQLVDKVYLIV 179
5799999999999998888766666665 PP
== domain 4 score: -3.8 bits; conditional E-value: 8
TIGR01812 347 tdkkGevilenesivkGlfaaGEa 370
t+ + ++ +kGlf aG++
MMSYN1_0819 263 TND------KMQTEIKGLFVAGDV 280
442......3345599****9986 PP
>> TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.2 0.1 0.00059 0.056 1 34 [. 10 42 .. 10 50 .. 0.91
2 ? -0.7 0.0 1.2 1.1e+02 109 162 .. 69 120 .. 65 130 .. 0.76
3 ? -1.9 0.0 2.7 2.6e+02 2 34 .. 152 183 .. 152 198 .. 0.77
4 ? -2.5 0.0 4.2 4e+02 113 143 .. 192 222 .. 179 235 .. 0.73
Alignments for each domain:
== domain 1 score: 10.2 bits; conditional E-value: 0.00059
TIGR01984 1 dviivGgglvGlslAlaLsrksklkialieaksa 34
dvii+G+g++Gl+ A+ +r + lk+ + e+ ++
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAG-LKTVIYEQSAP 42
8*********************.*****999876 PP
== domain 2 score: -0.7 bits; conditional E-value: 1.2
TIGR01984 109 qallkrlaekkkiklyapaelkeierekdeaevkldneqkleakLlvaAdGans 162
+++l++l + +++ + +++ ++ +d e+ l+n+++ +a +++A G++
MMSYN1_0819 69 KMYLQALSLNASVEFVGVNSI--FKNADDIFEISLANGETKKAYAVILATGTQE 120
667777777777777744443..33455668999*****99********99875 PP
== domain 3 score: -1.9 bits; conditional E-value: 2.7
TIGR01984 2 viivGgglvGlslAlaLsrksklkialieaksa 34
v++vGgg + + A+ Ls+ k+ li +++
MMSYN1_0819 152 VAVVGGGYSAVQEAMYLSQLV-DKVYLIVRRDV 183
7899***99999999999988.56666655554 PP
== domain 4 score: -2.5 bits; conditional E-value: 4.2
TIGR01984 113 krlaekkkiklyapaelkeierekdeaevkl 143
++l+ + +++ + +++kei+ +++ + +++
MMSYN1_0819 192 AKLKAQPNVEFLLKSQVKEIHGTEKVESLTI 222
5688889999999999999988777655554 PP
>> TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.6 0.0 0.0044 0.42 147 178 .. 10 41 .. 3 62 .. 0.84
2 ? 3.3 1.1 0.095 9.1 69 174 .. 76 178 .. 72 228 .. 0.64
3 ? -2.2 0.0 4.3 4.1e+02 43 65 .. 281 299 .. 264 307 .. 0.72
Alignments for each domain:
== domain 1 score: 7.6 bits; conditional E-value: 0.0044
TIGR03911 147 dvlviGlGkvGtaaavalvkkGakvyvydkek 178
dv++iG G+ G ++a++ G k y++
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKTVIYEQSA 41
9***********************99998765 PP
== domain 2 score: 3.3 bits; conditional E-value: 0.095
TIGR03911 69 svaaileflGleafvtdspdvkG..yaeavekGaeiilladderfiavnlktGkiadnseatGkiyaealdllkaglkekdvlviGlGkvGtaaaval 164
s++a +ef+G+++ + d+ +a+ k a ++la + i +e Gk+ + + a k+k v v+G G + a++l
MMSYN1_0819 76 SLNASVEFVGVNSIFKNADDIFEisLANGETKKAYAVILATGTQENKLG-----IKGEDELYGKGVSYCAVCDGAFYKNKPVAVVGGGYSAVQEAMYL 168
5666666666666666666664311333344445555555443322222.....3334444455555544555677889******************9 PP
TIGR03911 165 vkkGakvyvy 174
++ kvy
MMSYN1_0819 169 SQLVDKVYLI 178
9999999964 PP
== domain 3 score: -2.2 bits; conditional E-value: 4.3
TIGR03911 43 adiPasekvavvPitaGeGiigg 65
+d+P + + i++G+G i+g
MMSYN1_0819 281 RDVP----LRQIAIACGDGAIAG 299
6677....334668999999976 PP
>> TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.7 0.0 0.0004 0.038 4 35 .. 10 41 .. 8 51 .. 0.92
Alignments for each domain:
== domain 1 score: 10.7 bits; conditional E-value: 0.0004
TIGR02360 4 qvaiigaGpsGlllgqllhkaGidavilerks 35
+v iig+Gp+Gl + +aG+++vi e+ +
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARAGLKTVIYEQSA 41
589**************************976 PP
>> TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.9 0.1 0.042 4 5 25 .. 10 30 .. 6 37 .. 0.88
2 ? -3.2 0.0 5.6 5.3e+02 173 193 .. 100 118 .. 96 124 .. 0.75
3 ? 5.0 0.0 0.018 1.7 357 385 .. 258 286 .. 238 307 .. 0.84
Alignments for each domain:
== domain 1 score: 3.9 bits; conditional E-value: 0.042
TIGR01176 5 diavigaggaglraaiaaaea 25
d+++ig+g agl +ai a+a
MMSYN1_0819 10 DVIIIGSGPAGLTSAIYTARA 30
89**************99987 PP
== domain 2 score: -3.2 bits; conditional E-value: 5.6
TIGR01176 173 elaegelvtikadavvlatgg 193
la+g +t ka av+latg
MMSYN1_0819 100 SLANG--ETKKAYAVILATGT 118
44555..577999******96 PP
== domain 3 score: 5.0 bits; conditional E-value: 0.018
TIGR01176 357 mggietdincetrikglfavgecasvglh 385
g i t+ + +t ikglf +g++ v l+
MMSYN1_0819 258 KGYIPTNDKMQTEIKGLFVAGDVRDVPLR 286
58899*****************9988775 PP
>> TIGR02731 phytoene_desat: phytoene desaturase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.7 0.1 0.0031 0.29 2 32 .. 11 41 .. 10 51 .. 0.86
2 ? 0.4 0.1 0.53 50 2 35 .. 152 185 .. 151 200 .. 0.86
3 ? -0.7 0.0 1.1 1e+02 229 281 .. 201 253 .. 189 276 .. 0.78
Alignments for each domain:
== domain 1 score: 7.7 bits; conditional E-value: 0.0031
TIGR02731 2 vaiagaglaglsaakyladaghtpivleard 32
v+i g+g agl++a y a ag + ++ e+
MMSYN1_0819 11 VIIIGSGPAGLTSAIYTARAGLKTVIYEQSA 41
899*********************9999764 PP
== domain 2 score: 0.4 bits; conditional E-value: 0.53
TIGR02731 2 vaiagaglaglsaakyladaghtpivleardvlg 35
va+ g+g + + a yl++ + ++ +rdv+
MMSYN1_0819 152 VAVVGGGYSAVQEAMYLSQLVDKVYLIVRRDVFR 185
899********************99999***974 PP
== domain 3 score: -0.7 bits; conditional E-value: 1.1
TIGR02731 229 evrlnarlkeivlnedgsvkafaladlegkesfevtada.yvsala.vdilklll 281
e l++++kei+ + v++++++ +g+++ ev+a + y+ +++ +d +k l
MMSYN1_0819 201 EFLLKSQVKEIHGT--EKVESLTITTPNGEKKLEVSAIFpYIGSTPlIDSVKHLC 253
55677888888655..579999999999999999999765888877468888775 PP
>> TIGR02730 carot_isom: carotene isomerase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.5 0.2 0.00048 0.046 1 37 [. 9 44 .. 9 48 .. 0.91
2 ? -2.2 0.0 3.5 3.3e+02 252 280 .. 86 114 .. 81 125 .. 0.84
Alignments for each domain:
== domain 1 score: 10.5 bits; conditional E-value: 0.00048
TIGR02730 1 ydaivigsgigglvtatqlaakgakvlvlekylipgg 37
yd+i+igsg gl +a a g+k+++ e+ pgg
MMSYN1_0819 9 YDVIIIGSGPAGLTSAIYTARAGLKTVIYEQS-APGG 44
9**************************99985.4666 PP
== domain 2 score: -2.2 bits; conditional E-value: 3.5
TIGR02730 252 vtkiilendkavgvkladgekirakrivs 280
v +i ++ d + la+ge+ +a ++
MMSYN1_0819 86 VNSIFKNADDIFEISLANGETKKAYAVIL 114
7789999999999*******999988764 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (310 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 218 (0.048574); expected 89.8 (0.02)
Passed bias filter: 181 (0.0403298); expected 89.8 (0.02)
Passed Vit filter: 70 (0.0155971); expected 4.5 (0.001)
Passed Fwd filter: 47 (0.0104724); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 47 [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 1309.33
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0819 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0820 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0820.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0820/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0820 [L=526]
Description: lgt 3=Putative Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.8e-31 105.8 18.2 5.6e-25 86.2 9.0 2.5 2 TIGR00544 lgt: prolipoprotein diacylglyceryl transferase
Domain annotation for each model (and alignments):
>> TIGR00544 lgt: prolipoprotein diacylglyceryl transferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 86.2 9.0 1.2e-28 5.6e-25 33 207 .. 39 258 .. 24 265 .. 0.77
2 ! 24.3 1.7 9.7e-10 4.4e-06 188 276 .. 425 515 .. 387 519 .. 0.60
Alignments for each domain:
== domain 1 score: 86.2 bits; conditional E-value: 1.2e-28
TIGR00544 33 iiiaillivrklqkknvgiqkdefesllfiavlgvvlgaRlgyvlieekgdylseplnifkvfdgGlaihGgllgaiiagliys....rekkksflkl 126
+iia +i++kl+ i +efe+ +fi v +lga + ++ + + + + if +++ G+++ G ll i+ag+ ++ +++ +s++++
MMSYN1_0820 39 VIIA-SIICLKLK----AIPLKEFEISIFIIVPFGILGATIFGKVFLPFYQHSNTWYRIFFFWEPGMSLFGSLLFGILAGIAWFlkrsKTTMISLWVY 131
3333.44444443....457789*******************999998889999999************************999676667789***** PP
TIGR00544 127 lDliapavllGqaiGRlgNFlNaElyGrvlkgs....................................tpwglliplvkk................. 171
+D i p +llGq+iGR+gNF N+E+ G+++ +
MMSYN1_0820 132 ADCIIPNILLGQVIGRWGNFYNHEILGQIVDYNslywlpesiknnlfyfpnfiefhhlnnptdllvshtN----------Wwdfnsntwsevqnfvnn 219
****************************999888999998887777777777666666666666666552..........044444444456667666 PP
TIGR00544 172 ....vsdldlidglfriPsfLiEsffegvvlilllmllik 207
++d + + P+fL+Es+ +++ ++ +m++i+
MMSYN1_0820 220 nnqtIKDVLNQKITYHQPLFLYESIANLFLWLI-IMFIIN 258
77545566666678999**********976544.444444 PP
== domain 2 score: 24.3 bits; conditional E-value: 9.7e-10
TIGR00544 188 LiEsffegvvlilllm.....llikkirkdgtiavvYllgygifRliiEylRepdlklsealflaismsqiLilllivgilillvlakklsk.ki 276
ff++ v+ + +k ir+ g ++ Y+lgy i+R+i+E++R++ + ++ + ai +iL+ +l ++++++++l++ +s+ k+
MMSYN1_0820 425 FWNLFFNVNVFSKEIEklnnpNQFKVIRS-GVATGCYVLGYLIIRIILETFRQNHELFIQNHR-AIN-FIILSAIL-LSGIFIILLTQFISPyKW 515
55555555555443331111135778888.************************877666332.222.24444443.455555555554444455 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (526 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 427 (0.0951426); expected 89.8 (0.02)
Passed bias filter: 96 (0.0213904); expected 89.8 (0.02)
Passed Vit filter: 20 (0.00445633); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.21
# Mc/sec: 3596.95
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0820 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0821 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0821.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0821/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0821 [L=313]
Description: hpr-ser: HPr(Ser) kinase/phosphatase 5=Equivalog Glucose transport & catabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.1e-85 283.0 2.4 7e-85 282.8 2.4 1.0 1 TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase
5.2e-08 30.3 0.1 1.6e-07 28.7 0.0 1.7 2 TIGR04355 HprK_rel_B: HprK-related kinase B
8.8e-05 19.9 0.0 0.00014 19.3 0.0 1.3 1 TIGR04249 SCM_chp_ScmC: SynChlorMet cassette protein ScmC
0.00054 17.1 0.0 0.001 16.2 0.0 1.3 1 TIGR04352 HprK_rel_A: HprK-related kinase A
Domain annotation for each model (and alignments):
>> TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 282.8 2.4 6.2e-88 7e-85 1 285 [. 4 292 .. 4 308 .. 0.95
Alignments for each domain:
== domain 1 score: 282.8 bits; conditional E-value: 6.2e-88
TIGR00679 1 itvkelveklklelvageeglereieepeinrpglelaGylelfakk...rvqvlGktEleylesleeeerkerlekllkekvpllivtkglelpeel 95
+t+k+l ++lk+e+++g+++l++ei+++ inr glela+y++ f+++ r +++++E+ y+ +++e+++ +++++l+k +p+li+t+++ +++l
MMSYN1_0821 4 FTIKDLTDNLKFEIISGQDKLDTEIKSYGINRAGLELADYFKPFKDQsewRATLMSTKESGYMLQFDEKTKIRKYTQLMKCGIPVLIITNKF-KDKTL 100
589***************************************999866669*****************************************.57899 PP
TIGR00679 96 lelaeeenvpllktkls.tseliselttfLeeelapettvhGvlvdvfGvGvLitGesGiGKSElaleLikrghrLvaDDaveikriaeeeliGrape 192
+++a++ n+pllk++++ t +l+++++++ + ++p+++vh+ l+++fG+GvLi G+sGiGKSEl+leLik++h++v+DD++ +++ ++++iGr +
MMSYN1_0821 101 IKVAKRLNFPLLKSDYPiTVQLVQKIQDIYDIYFSPTSEVHAALMNIFGTGVLIKGKSGIGKSELCLELIKHNHLFVGDDRIILTNK-SNKIIGRVHP 197
****************9789*******************************************************************.********** PP
TIGR00679 193 llkhflevRGlGiidikelfGasavreekkielvveLeewdeek..eydrlgleektkeilgvkipkitipvkpGrnlavlievaarnlklkksG 285
+lk+++e+RG+Gi di + G + +++e+ +elv+eL+e++e++ + drlg++ ++++ilgv+i++i+ipv++Gr+l ++ie+a+ ++k++ks
MMSYN1_0821 198 ILKNLIEIRGIGIFDIVKSNGYQVIMNESPVELVIELVEYKEKNidNSDRLGNDWQKTKILGVEIEHIQIPVSAGRSLVNIIESAVAQFKINKSK 292
******************************************9999*******************************************998764 PP
>> TIGR04355 HprK_rel_B: HprK-related kinase B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.3 0.0 0.39 4.4e+02 40 61 .. 39 60 .. 20 74 .. 0.71
2 ! 28.7 0.0 1.4e-10 1.6e-07 147 196 .. 140 189 .. 135 200 .. 0.92
Alignments for each domain:
== domain 1 score: -2.3 bits; conditional E-value: 0.39
TIGR04355 40 klaeyfkeflaeagkavievta 61
+la+yfk f ++ + + +
MMSYN1_0821 39 ELADYFKPFKDQSEWRATLMST 60
6999999999877655554444 PP
== domain 2 score: 28.7 bits; conditional E-value: 1.4e-10
TIGR04355 147 ghaagvaeagrGlalaGfsGmGkstlalhlmskGvtfvsndrilverdae 196
+haa + g+G+ + G sG Gks l+l+l+++ fv +dri++ ++++
MMSYN1_0821 140 VHAALMNIFGTGVLIKGKSGIGKSELCLELIKHNHLFVGDDRIILTNKSN 189
6******************************************9987765 PP
>> TIGR04249 SCM_chp_ScmC: SynChlorMet cassette protein ScmC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.3 0.0 1.2e-07 0.00014 101 184 .. 117 198 .. 93 201 .. 0.77
Alignments for each domain:
== domain 1 score: 19.3 bits; conditional E-value: 1.2e-07
TIGR04249 101 pleveivsmwyllyPvyrralerGGlPlhaalvekdGkgvllaasggtGkstcCrrisdpWrarcddealvvrdaekgy..rahPf 184
p v++v+ +y +y +haal++ G gvl+ +++g Gks C + + + + d+ ++++++ + r+hP+
MMSYN1_0821 117 PITVQLVQKIQDIYDIYFSPTS----EVHAALMNIFGTGVLIKGKSGIGKSELCLELIKHNHLFVGDDRIILTNKSNKIigRVHPI 198
5556666666666655554433....59**************************99998888888888887776654423388886 PP
>> TIGR04352 HprK_rel_A: HprK-related kinase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.2 0.0 8.9e-07 0.001 99 161 .. 140 201 .. 136 213 .. 0.94
Alignments for each domain:
== domain 1 score: 16.2 bits; conditional E-value: 8.9e-07
TIGR04352 99 lHaavlerdgralilpaaPGsGKStLcaalalrGwRLlsDElalldledglllplprpislKN 161
+Haa ++ g ++++ + G GKS Lc l+ + + ++ D+ +l ++ ++++ ++pi lKN
MMSYN1_0821 140 VHAALMNIFGTGVLIKGKSGIGKSELCLELIKHNHLFVGDDRIILTNKSNKIIGRVHPI-LKN 201
7*****************************************************99999.777 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (313 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 256 (0.057041); expected 89.8 (0.02)
Passed bias filter: 131 (0.0291889); expected 89.8 (0.02)
Passed Vit filter: 19 (0.00423351); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 2140.39
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0821 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0822 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0822.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0822/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0822 [L=224]
Description: ecfS 2=Generic Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-37 125.7 21.6 5.2e-37 125.1 21.6 1.3 1 TIGR04518 ECF_S_folT_fam: ECF transporter S component, folat
Domain annotation for each model (and alignments):
>> TIGR04518 ECF_S_folT_fam: ECF transporter S component, folate family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.1 21.6 1.2e-40 5.2e-37 2 161 .. 38 207 .. 37 209 .. 0.98
Alignments for each domain:
== domain 1 score: 125.1 bits; conditional E-value: 1.2e-40
TIGR04518 2 sdvksLtllalliaLsiiLkrl...lslqtfslrisievipvllagiilGpvagaivglaaDlvgliltptgfpflgftlsavlqglipglvyykkkk 96
+++k++++++ l+aLs+iL+++ +lq++ +ri++++++++l+g+i+Gp+ag+++g+a+Dl+g++++++g +++gf++++ ++g++ +lv+ +k +
MMSYN1_0822 38 FTIKNIAIIGTLVALSVILSYVvnrNFLQILGTRITLGYFVNFLIGMIFGPLAGILAGIATDLIGTMIVGSGGWHIGFVFAKSMLGFLGSLVFLFK-N 134
89********************999999********************************************************************.* PP
TIGR04518 97 ekklfllllisvvlvevvitlvltpl........wLqvlygipltlllaiRvikeiimipvdiiliylllkvl 161
+k ++ l+++s++++ +++ ++++p+ +L+++y+i+++++++++++ + ++++++i +iy+l+k++
MMSYN1_0822 135 NKYWVALMIWSYAIGLFLVIFIIHPIsfvtvggpSLAIAYSITKFIVYPVELVLYSLLTYASIRVIYILIKKD 207
*********************************************************************9975 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (224 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 281 (0.0626114); expected 89.8 (0.02)
Passed bias filter: 51 (0.0113636); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.18
# Mc/sec: 1787.08
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0822 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0823 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0823.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0823/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0823 [L=371]
Description: folC 4=Probable Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-67 226.2 0.1 1.5e-51 174.0 0.0 2.0 2 TIGR01499 folC: bifunctional protein FolC
9.7e-12 42.5 0.0 3.5e-06 24.1 0.0 2.9 3 TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase
7.3e-05 18.9 0.1 0.0055 12.7 0.0 2.7 3 TIGR02068 cya_phycin_syn: cyanophycin synthetase
0.0033 14.2 0.1 0.0093 12.7 0.0 1.7 2 TIGR04012 poly_gGlu_PgsB: poly-gamma-glutamate synthase PgsB
Domain annotation for each model (and alignments):
>> TIGR01499 folC: bifunctional protein FolC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 174.0 0.0 1.3e-54 1.5e-51 5 195 .. 22 210 .. 20 237 .. 0.92
2 ! 50.1 0.0 5.7e-17 6.4e-14 269 399 .. 251 365 .. 242 366 .. 0.91
Alignments for each domain:
== domain 1 score: 174.0 bits; conditional E-value: 1.3e-54
TIGR01499 5 kkllealgnpekklrvihvaGTnGKGStaaflesiLeaaglkvglftSPHlvsfrERirvngepiseeelaqlveeveealkklspskptfFelltll 102
k+l++l++pe+ l+vi v+GTnGKGSt+ +l++ L ++ kvglf SP +ERi++n++pis+++l++++ ++ +kk ++ fFe+ tl+
MMSYN1_0823 22 DKVLDELNHPEEFLKVINVVGTNGKGSTSFYLSKGLLKKYQKVGLFISPAFLYQNERIQINNTPISDNDLKSYLHKIDYLIKKY---QLLFFEIWTLI 116
5899********************************9999*******************************************6...7********** PP
TIGR01499 103 aflyFaeeqvdvavlEvGlGGrlDaTnvie.pevsvitsiglDHteiLGdtleeIAkeKagIikegvpivtaeqepealevlkkkAeekgaell 195
++lyF++++vd++v E+G+GG D+T ++ + +s++tsi++DH++iLG+++ eI ++K I k+ ++++++ ++ + + ++++ +k++el+
MMSYN1_0823 117 MILYFKDQKVDIVVCEAGIGGIKDTTSFLTnQLFSLCTSISYDHMDILGNSIDEIIYNKINIAKPNTKLFISYDNLKYKDKINEQLINKNVELI 210
******************************9999*************************************99887777777777666666655 PP
== domain 2 score: 50.1 bits; conditional E-value: 5.7e-17
TIGR01499 269 GRleileednpnillDgAHnpesaealvewlkkeankrkivllfgllkdkdaaallkalkelvkkevlvtevespraesaadlekaaesqgeeelvss 366
GR+ +++ i++DgAHn +++++l++ +k +++ ++l++ +++k++ + l+ l +++++ v++ e++ ++ s ++++ +++ +++
MMSYN1_0823 251 GRFTTIRTFPNHIIIDGAHNVDGINKLIQSVK--MLNKEFIVLYASITTKEYLKSLELLDQNFNE-VYICEFNFIKSWSIDNIDHKNK-------IKD 338
9999999987889*******************..6777777**********************96.********99999999998755.......789 PP
TIGR01499 367 wrealeeakekaeeeekvlVtGSlylvgevlkl 399
w+++l++ + ++++++GSly++ v+++
MMSYN1_0823 339 WKKFLKN------NTKNIIICGSLYFIPLVYNY 365
*******......789***********988877 PP
>> TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.1 0.0 3.1e-09 3.5e-06 79 150 .. 29 97 .. 7 113 .. 0.78
2 ? 0.8 0.0 0.037 42 153 215 .. 123 186 .. 114 231 .. 0.65
3 ! 13.9 0.0 4.1e-06 0.0046 307 362 .. 237 290 .. 224 294 .. 0.83
Alignments for each domain:
== domain 1 score: 24.1 bits; conditional E-value: 3.1e-09
TIGR01085 79 depskklkviGvtGTnGKttttsliaqlleklgkktgligTvglelggeelikeeakltTpealelqkllae 150
++p++ lkvi v GTnGK +t+ ++ + l k+ +k+gl + +e++ + ++t + +l+++l++
MMSYN1_0823 29 NHPEEFLKVINVVGTNGKGSTSFYLSKGLLKKYQKVGLFISPAFLYQNERI---QINNTPISDNDLKSYLHK 97
78*************************999999999987666665554555...445666666777777766 PP
== domain 2 score: 0.8 bits; conditional E-value: 0.037
TIGR01085 153 eagaeyavlEvSShaLaqgRvegvefdvavftnlsrdHLdfH.gtlenYlaaKaklfkelslkk 215
+++++++v E+ +++ ++ ++t++s dH+d +++++ + K ++ k +++
MMSYN1_0823 123 DQKVDIVVCEAGIGGIKDTTSFLTNQLFSLCTSISYDHMDILgNSIDEIIYNKINIAKPNTKLF 186
5666666666666666666555566667899*********751589999988888887655443 PP
== domain 3 score: 13.9 bits; conditional E-value: 4.1e-06
TIGR01085 307 ealvealeklkgvkGRlelvdsgqkfevivDYAHtpdalekvletlrklkkgrliv 362
+ ++ ++ +l++ GR+ ++++ + ++i+D AH d+++k++++++ l+ ++ iv
MMSYN1_0823 237 NIFQTNIFQLQPPLGRFTTIRTFP-NHIIIDGAHNVDGINKLIQSVKMLN-KEFIV 290
556778899*************87.89******************98655.45554 PP
>> TIGR02068 cya_phycin_syn: cyanophycin synthetase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1.9 0.0 0.0089 10 479 515 .. 35 71 .. 16 87 .. 0.71
2 ? 0.5 0.0 0.023 26 538 589 .. 121 171 .. 117 233 .. 0.83
3 ! 12.7 0.0 4.9e-06 0.0055 709 792 .. 236 318 .. 224 326 .. 0.73
Alignments for each domain:
== domain 1 score: 1.9 bits; conditional E-value: 0.0089
TIGR02068 479 iPivavtGtnGkttvtrlvahilkltGkvvGltttdG 515
+ ++ v GtnGk ++ +++ l ++ ++vGl +
MMSYN1_0823 35 LKVINVVGTNGKGSTSFYLSKGLLKKYQKVGLFISPA 71
6689********9998877776666667788766654 PP
== domain 2 score: 0.5 bits; conditional E-value: 0.023
TIGR02068 538 LkdktvdaavletarGgiLreGLafdradvgvvtniaaDhLGlgdintiedl 589
+kd++vd+ v e+ Ggi + ++ t i+ Dh+ + + n i+++
MMSYN1_0823 121 FKDQKVDIVVCEAGIGGIKDTTSFLTNQLFSLCTSISYDHMDILG-NSIDEI 171
5799*************987777677778899********98765.455554 PP
== domain 3 score: 12.7 bits; conditional E-value: 4.9e-06
TIGR02068 709 lktfkadaaq..aP.grfnlfnlggatvlvDyahnpealkavveaveklkarrrigvvggpgDrrDedlvklgkllgeafDqiilke 792
l++f+++ q P grf+ ++++D ahn+++++++++ v+ l+ + i+ +++ + ++ +k +ll + f+++++ e
MMSYN1_0823 236 LNIFQTNIFQlqPPlGRFTTIRTFPNHIIIDGAHNVDGINKLIQSVKMLN-KEFIVLYASIT---TKEYLKSLELLDQNFNEVYICE 318
55666554321133599999999999*********************998.55555555443...3455666677777777777765 PP
>> TIGR04012 poly_gGlu_PgsB: poly-gamma-glutamate synthase PgsB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.2 0.0 0.27 3e+02 31 51 .. 37 57 .. 19 64 .. 0.67
2 ! 12.7 0.0 8.3e-06 0.0093 131 192 .. 152 218 .. 143 242 .. 0.79
Alignments for each domain:
== domain 1 score: -2.2 bits; conditional E-value: 0.27
TIGR04012 31 rihvNGiRGKssvtRLiaail 51
i+v G+ GK s + + +l
MMSYN1_0823 37 VINVVGTNGKGSTSFYLSKGL 57
49999*****88775544444 PP
== domain 2 score: 12.7 bits; conditional E-value: 8.3e-06
TIGR04012 131 vivNvreDHldvmGptldevaea.lsatiPkkgklvtaed.eyldffkeaakdrntkliva...dae 192
+ + + DH+d++G++ de++ ++ + P+ ++ ++ +y d ++e+ ++n +li + + +
MMSYN1_0823 152 LCTSISYDHMDILGNSIDEIIYNkINIAKPNTKLFISYDNlKYKDKINEQLINKNVELIYTdlyEDQ 218
5688999************98651666677666666666689*****************99444344 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (371 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 291 (0.0648396); expected 89.8 (0.02)
Passed bias filter: 118 (0.0262923); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.23
# Mc/sec: 2316.40
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0823 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0824 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0824.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0824/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0824 [L=946]
Description: uvra: excinuclease ABC subunit A 5=Equivalog DNA repair
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0 1339.9 10.0 0 1339.7 10.0 1.0 1 TIGR00630 uvra: excinuclease ABC subunit A
6.1e-37 125.0 14.1 2.4e-14 51.3 0.3 4.8 4 TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC tr
8.8e-35 118.6 1.4 2.2e-12 44.7 0.0 4.1 4 TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
2.2e-32 110.2 1.5 5e-10 36.9 0.0 4.2 4 TIGR04521 ECF_ATPase_2: energy-coupling factor transporter A
1.6e-31 107.6 1.8 6e-10 37.1 0.0 4.5 4 TIGR02673 FtsE: cell division ATP-binding protein FtsE
5.2e-28 96.2 1.9 1.1e-08 32.8 0.0 4.3 4 TIGR04520 ECF_ATPase_1: energy-coupling factor transporter A
6.5e-28 95.7 2.8 1e-08 32.8 0.0 4.3 4 TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-bindin
3.2e-26 90.2 2.5 8.8e-07 26.5 0.0 4.4 4 TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding
9.9e-26 88.5 0.1 7.9e-11 39.6 0.0 4.1 4 TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, A
1.1e-25 88.2 2.9 2.6e-09 34.2 0.1 4.1 4 TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
2.9e-24 83.5 1.8 5.7e-09 33.7 0.0 4.4 4 TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
3.5e-24 83.6 1.0 1.7e-07 29.0 0.0 4.4 4 TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit,
1e-23 82.0 0.6 2.6e-06 25.0 0.0 4.3 4 TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein
1.3e-23 81.4 8.3 4.6e-08 30.0 0.0 4.2 4 TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
2.3e-23 81.1 1.0 5.6e-10 37.2 0.0 4.0 4 TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding
2.2e-22 77.6 2.7 2.2e-06 25.3 0.0 4.4 4 TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-bi
9.3e-22 75.2 4.4 2.8e-07 27.4 0.0 4.1 4 TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
4.1e-21 72.9 1.2 1.6e-07 28.0 0.0 4.3 4 TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
4.2e-21 73.5 0.1 2.4e-06 24.9 0.0 4.3 4 TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transp
8e-21 72.1 1.3 1.1e-08 32.1 0.0 4.1 4 TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding p
1.1e-20 71.5 4.9 1.1e-09 35.2 0.0 4.1 4 TIGR03375 type_I_sec_LssB: type I secretion system ATPase
6.4e-20 69.6 0.0 9.7e-05 19.9 0.0 4.2 4 TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding pr
8.2e-19 65.6 0.7 2.2e-08 31.2 0.0 4.0 4 TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding pr
9.1e-19 65.7 0.2 2.4e-07 28.3 0.0 4.3 4 TIGR02770 nickel_nikD: nickel import ATP-binding protein Nik
1.1e-18 65.5 9.7 2.7e-06 24.7 0.0 5.2 5 TIGR01186 proV: glycine betaine/L-proline transport ATP bind
1.2e-18 65.4 0.5 1e-07 29.6 0.0 4.3 4 TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit,
1.1e-17 62.3 0.1 1.4e-05 22.5 0.0 4.2 4 TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding p
1.6e-17 61.8 1.4 1.2e-06 26.4 0.0 4.3 4 TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
9.6e-17 58.7 3.4 2.9e-07 27.4 0.0 4.1 4 TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD f
1.1e-16 58.1 0.9 3.8e-06 23.3 0.0 4.1 4 TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC trans
1.3e-16 59.0 0.1 1.5e-07 29.3 0.0 2.9 3 TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter
2.1e-16 57.6 2.5 5.3e-07 26.5 0.0 3.8 4 TIGR00955 3a01204: pigment precursor permease
4.6e-16 56.9 3.6 4.4e-07 27.4 0.0 4.1 4 TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP
6.5e-16 55.9 0.4 0.0003 17.4 0.0 4.3 4 TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC trans
7.6e-16 56.3 2.3 3.6e-05 21.3 0.1 4.4 4 TIGR02769 nickel_nikE: nickel import ATP-binding protein Nik
4.3e-15 53.5 1.3 0.0004 17.4 0.0 4.2 4 TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-bindin
5e-15 53.3 0.0 6.2e-08 30.0 0.0 3.3 3 TIGR01187 potA: polyamine ABC transporter, ATP-binding prote
6.9e-15 53.1 3.5 1.9e-05 22.2 0.1 4.3 4 TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding
7.6e-15 52.7 1.4 0.0001 19.4 0.0 4.2 4 TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-bindi
1.8e-14 51.6 7.8 4.4e-08 30.6 0.0 3.7 3 TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-bi
6.8e-14 49.2 2.0 7.5e-05 19.4 0.0 4.4 4 TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system
6.9e-14 49.1 3.9 8.7e-06 22.4 0.1 4.2 4 TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protei
2e-13 48.3 7.3 6.9e-05 20.3 0.1 4.6 4 TIGR01978 sufC: FeS assembly ATPase SufC
1.3e-12 45.7 0.5 0.0007 17.2 0.0 4.0 4 TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protei
2.5e-12 44.8 2.6 0.0096 13.5 0.0 4.4 4 TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding protei
1.4e-11 42.0 0.9 3.9e-06 24.2 0.0 4.4 5 TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transport
9.9e-11 39.2 0.8 0.0028 14.7 0.0 3.9 4 TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system
1.6e-10 38.8 0.1 0.0057 14.1 0.0 3.9 4 TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein
2.7e-10 38.3 11.7 0.0015 16.2 0.2 4.5 4 TIGR03740 galliderm_ABC: lantibiotic protection ABC transpor
3.8e-10 36.9 0.2 0.00025 17.7 0.0 2.9 3 TIGR01192 chvA: glucan exporter ATP-binding protein
2.8e-09 33.7 0.3 8.3e-06 22.3 0.0 3.7 4 TIGR00958 3a01208: antigen peptide transporter 2
6.4e-09 33.2 0.1 0.00016 18.7 0.0 2.5 2 TIGR01288 nodI: nodulation ABC transporter NodI
7.6e-07 24.9 0.7 0.083 8.2 0.0 4.0 4 TIGR01271 CFTR_protein: cystic fibrosis transmembrane conduc
1.5e-05 20.8 0.2 0.0026 13.3 0.0 2.9 3 TIGR00956 3a01205: pleiotropic drug resistance family protei
9.4e-05 17.9 0.4 0.3 6.3 0.0 3.6 4 TIGR00957 MRP_assoc_pro: multi drug resistance-associated pr
0.00018 19.2 0.0 0.052 11.2 0.0 2.6 2 TIGR00041 DTMP_kinase: dTMP kinase
0.00021 18.9 0.0 0.33 8.5 0.0 2.5 2 TIGR00455 apsK: adenylyl-sulfate kinase
0.00025 17.4 0.1 0.016 11.5 0.0 2.5 3 TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
0.00058 15.8 0.7 0.024 10.5 0.0 3.2 4 TIGR00618 sbcc: exonuclease SbcC
0.00077 17.0 0.0 0.022 12.2 0.0 2.6 2 TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
0.0011 15.7 0.5 0.051 10.2 0.0 2.8 3 TIGR04435 restrict_AAA_1: restriction system-associated AAA
0.0012 15.3 0.7 0.046 10.1 0.0 2.9 4 TIGR00954 3a01203: peroxysomal long chain fatty acyl transpo
0.0013 16.2 0.6 0.19 9.2 0.0 2.4 2 TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase
0.0017 14.9 1.8 2.3 4.6 0.0 3.7 4 TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
0.0025 15.0 0.0 0.14 9.3 0.0 2.8 3 TIGR02524 dot_icm_DotB: Dot/Icm secretion system ATPase DotB
0.0058 14.2 0.1 2.4 5.7 0.1 2.6 2 TIGR03263 guanyl_kin: guanylate kinase
0.0059 13.7 0.0 0.39 7.7 0.0 2.3 2 TIGR04355 HprK_rel_B: HprK-related kinase B
------ inclusion threshold ------
0.013 12.6 0.0 0.17 9.0 0.0 2.3 2 TIGR00750 lao: LAO/AO transport system ATPase
0.028 12.1 0.2 1.1 6.9 0.0 2.9 3 TIGR03881 KaiC_arch_4: KaiC domain protein, PAE1156 family
0.049 9.7 0.1 0.62 6.1 0.0 2.1 2 TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
0.053 10.9 2.3 0.36 8.1 0.8 2.4 2 TIGR02349 DnaJ_bact: chaperone protein DnaJ
Domain annotation for each model (and alignments):
>> TIGR00630 uvra: excinuclease ABC subunit A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 1339.7 10.0 0 0 1 924 [] 5 928 .. 5 928 .. 0.98
Alignments for each domain:
== domain 1 score: 1339.7 bits; conditional E-value: 0
TIGR00630 1 kivvkGarehnLknidvelprdklvvitGlsGsGkssLafdtiyaeGqrrYveslsayarqfLgkldkPdvdsieGLsPaisidqkttsknprstvGt 98
ki++kGarehnLknid+elp++kl+v+tGlsGsGkssLaf tiy eG+rrY+eslsayarqfLg +kPdvdsieGLsPaisidqktts+nprstvGt
MMSYN1_0824 5 KIIIKGAREHNLKNIDLELPKNKLIVFTGLSGSGKSSLAFSTIYQEGRRRYIESLSAYARQFLGGNEKPDVDSIEGLSPAISIDQKTTSHNPRSTVGT 102
69************************************************************************************************ PP
TIGR00630 99 vteiydYlrllfarvGkaycpecgekiekqsaeqivdeile.lpegkrvillaPvvrerkgefkklleklkkqGfarvrvdgevveleeelklekqkk 195
vteiydYlrll+ar+G++yc +++ +i++ s+++iv++i + +++g+++ +l+Pv+r++kg++ ++lekl+++Gf+rv vd+++ l+++++lek+++
MMSYN1_0824 103 VTEIYDYLRLLYARIGQPYCINNHGQIKAVSIKEIVENIKQsTSDGEQIHILSPVIRDKKGTHIDILEKLRNDGFIRVIVDDQLRMLDDQINLEKNQR 200
***************************************8725789**************************************************** PP
TIGR00630 196 htidvvidrlkvk..eeerkrlaesvetalklseGlleveledeeesakkeelfskkaaleeaglsleeleprlfsfnsplgaCpeCkGlGvkleldp 291
h+id+v+dr++ + +e ++r+ +ve+ lk+s+ l+++++ ++++ +e+lfs++++++ ++++++eleprlfsfn+plgaC+ C+GlGv+le d+
MMSYN1_0824 201 HNIDIVVDRIIYHnnDEINSRIFTAVEMGLKYSNNLIKIAFPNSNK---QEKLFSTSFSCKVCDFVVPELEPRLFSFNAPLGACELCNGLGVSLEPDI 295
**********987446789***********************9986...78999******************************************** PP
TIGR00630 292 ekivdeeelsleeaaivalkks..assyylqilkslaeklgfdldtplkdlseeakkavLyGsdeeveevkrekekekarlkkefeGvleelerryke 387
++i+++ +ls++++ +v +k+ +++ +q+++ l++ + +dl+tplkdl++++++++L Gsd+e+ ++ +++++k++ eG + ++rry e
MMSYN1_0824 296 NLILPDLKLSINQGGVVYYKNFmhTKNIEWQKFRILCDYYYIDLNTPLKDLTQKQRDIILWGSDREIDIKIVTENNNKYEKYDFIEGNAALIKRRYFE 393
*************99999998777999*****************************************99999999999999999************* PP
TIGR00630 388 teseaarealekflsekaCpsCkgtrlkkealavkvegksiadvselsveealeffeellkleeeekkiaeevlkeikerlkfLvdvGLdYLsleraa 485
++se+ar++++kf+s+k+C++Ckg+rl++ al+vk+++ksi d +++s++e l+f+ + +l+ ++++ia+ vl ei++r +fL +vGL YL+l+r+a
MMSYN1_0824 394 SKSEEARKWYSKFMSSKICKQCKGSRLNDIALSVKINEKSIFDYTNMSISEQLDFLLN-IDLTPTQATIAKLVLDEIISRTNFLNEVGLGYLNLSRTA 490
*********************************************************9.89************************************* PP
TIGR00630 486 etlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeetireaDyvvdiGPgaGehGGevvasgsleellk 583
+tlsGGe+qrirla+qiGs+L+G+lYvlDePsiGLhq+Dn++Li+tlk+lrdlGntlivvehDe+t++++D++vdiGP+aGe+GGe+ +sg+++++lk
MMSYN1_0824 491 TTLSGGESQRIRLAKQIGSQLTGILYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDEDTMKSSDWIVDIGPRAGEYGGEITFSGTYQDILK 588
************************************************************************************************97 PP
TIGR00630 584 kkesltgqYlsgkkkievPkerrkaegkvltlkgakennlkdidvsiplglltvitGvsgsGkstLindiLvkaleerlnkaktekgkvkeieGlekl 681
++ +tg+Yls k+ i vPk+rr ++gk +++ ga ennlk+i+v+ipl+++++itGvsgsGkstL++di++k ++++l+k+ gkvkei+G+e++
MMSYN1_0824 589 -SDTITGRYLSRKEGIVVPKTRRGGNGKKIEIIGASENNLKNINVTIPLNKFITITGVSGSGKSTLLEDIVYKGIHNNLSKEYLPIGKVKEIKGIENI 685
.578********************************************************************************************** PP
TIGR00630 682 dkvieidqspiGrtprsnPatYtgvfdeireLfaetpeakarGykagrfsfnvkgGrCeaCkGdGvikiemnflpdvyvpCevCkGkrynretLevky 779
+k i+i+q+piG+tprsnPatYt+vfd+ir+Lf++ peak rGyk+grfsfnv gGrCe+C+GdGvi+i m+f+p v v Ce+C+Gkryn etL vky
MMSYN1_0824 686 NKAIYISQEPIGKTPRSNPATYTSVFDDIRDLFTNLPEAKIRGYKKGRFSFNVSGGRCEHCQGDGVITISMQFMPSVEVVCEICEGKRYNDETLTVKY 783
************************************************************************************************** PP
TIGR00630 780 kgkniadvLdmtveeakeffeavpkisrklellvdvGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrl 877
k+k+iadvL+m+v+ea+ ffe++p+i++kle++++vGLgYiklGq+attLsGGe+qr+kL++ L k++tg+t+++lDePttGLh+dD+k+L+ vl++l
MMSYN1_0824 784 KNKSIADVLNMSVSEAYVFFENIPQIKQKLETILEVGLGYIKLGQNATTLSGGESQRIKLSTYLLKKQTGNTMFLLDEPTTGLHVDDVKRLIGVLNKL 881
************************************************************************************************** PP
TIGR00630 878 vdkGntvvviehnldviksaDyiidlGPeGGekGGkvvasgtPeeva 924
vd Gntv+ iehnld ik++D+iidlGP+GGe GG+vv++gtPe+++
MMSYN1_0824 882 VDLGNTVLCIEHNLDFIKVSDHIIDLGPDGGEYGGQVVVTGTPEQII 928
********************************************985 PP
>> TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.0 0.1 0.0016 0.1 7 40 .. 9 42 .. 4 49 .. 0.86
2 ! 50.8 0.5 5.4e-16 3.4e-14 86 206 .] 441 566 .. 408 566 .. 0.79
3 ! 19.6 0.5 1.9e-06 0.00012 6 43 .. 619 656 .. 615 687 .. 0.85
4 ! 51.3 0.3 3.7e-16 2.4e-14 103 206 .] 800 907 .. 782 907 .. 0.87
Alignments for each domain:
== domain 1 score: 10.0 bits; conditional E-value: 0.0016
TIGR03608 7 kfkdkeilkklslkiekGelvaivGesGsGKstl 40
k ++ lk+++l++ k +l+ +G sGsGKs l
MMSYN1_0824 9 KGAREHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
45566789************************87 PP
== domain 2 score: 50.8 bits; conditional E-value: 5.4e-16
TIGR03608 86 aLlenetveenlelalklkkkskk..ekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselil..ADEPtgsLDkknreevlellk 178
++ e+ n++l+ + + k ++ ++ l++vgl + +l+++ +lsgGe qR+ la+ + + + il DEP L +k+++++++ lk
MMSYN1_0824 441 SISEQLDFLLNIDLTPTQATIAKLvlDEIISRTNFLNEVGLgYLNLSRTATTLSGGESQRIRLAKQIGSQLTGILyvLDEPSIGLHQKDNDKLIKTLK 538
55555555556666555555544411334455789********************************98877555237******************** PP
TIGR03608 179 elkeegktiiivtHdpevaekadrviel 206
+l++ g+t+i+v Hd+ ++ +d ++++
MMSYN1_0824 539 HLRDLGNTLIVVEHDEDTMKSSDWIVDI 566
**********************999875 PP
== domain 3 score: 19.6 bits; conditional E-value: 1.9e-06
TIGR03608 6 kkfkdkeilkklslkiekGelvaivGesGsGKstlLni 43
+++ lk+++++i ++++i+G sGsGKstlL
MMSYN1_0824 619 IIGASENNLKNINVTIPLNKFITITGVSGSGKSTLLED 656
555677889***************************74 PP
== domain 4 score: 51.3 bits; conditional E-value: 3.7e-16
TIGR03608 103 lkkkskkekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkes...elilADEPtgsLDkknreevlellkelkeegktiiivtHdpev 196
++ ++ + k+k e++ +vgl + kl ++ +lsgGe qR+ l llk+ ++ l DEPt+ L ++ + ++ +l++l + g+t++++ H+
MMSYN1_0824 800 YVFFENIPQIKQKLETILEVGLgYIKLGQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLDF 897
455555567788999999*******************************986333699**************************************** PP
TIGR03608 197 aekadrviel 206
+ +d++i+l
MMSYN1_0824 898 IKVSDHIIDL 907
*******986 PP
>> TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.1 0.0 0.00051 0.032 331 364 .. 8 42 .. 2 46 .. 0.89
2 ! 40.4 0.0 6.7e-13 4.2e-11 439 528 .. 474 565 .. 448 566 .. 0.85
3 ! 18.3 0.0 3.3e-06 0.00021 333 369 .. 621 658 .. 613 697 .. 0.66
4 ! 44.7 0.0 3.5e-14 2.2e-12 445 529 .] 820 907 .. 788 907 .. 0.92
Alignments for each domain:
== domain 1 score: 11.1 bits; conditional E-value: 0.00051
TIGR02857 331 yegrk.palkevsltvepgelvalvGaSGaGKstl 364
+g++ lk+++l+++ +l++ +G SG+GKs+l
MMSYN1_0824 8 IKGAReHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
56777689*************************98 PP
== domain 2 score: 40.4 bits; conditional E-value: 6.7e-13
TIGR02857 439 elvkalpqgleteiGergagLSgGqrqRlaLArallrda..pllllDEPtahLDaeteaevlealrela.egrtvllvaHrlalaeladkivv 528
+++++++ g+ ++ + ++ LSgG+ qR+ LA+ + ++ l +lDEP L ++ + +++++l++l g+t+++v H++ +++ d iv+
MMSYN1_0824 474 NFLNEVGLGY-LNLSRTATTLSGGESQRIRLAKQIGSQLtgILYVLDEPSIGLHQKDNDKLIKTLKHLRdLGNTLIVVEHDEDTMKSSDWIVD 565
5677888888.89999********************99886788*************************77******************9997 PP
== domain 3 score: 18.3 bits; conditional E-value: 3.3e-06
TIGR02857 333 grk.palkevsltvepgelvalvGaSGaGKstllklll 369
g++ + lk++++t++ + + ++G SG+GKstll+ ++
MMSYN1_0824 621 GASeNNLKNINVTIPLNKFITITGVSGSGKSTLLEDIV 658
555579****************************8543 PP
== domain 4 score: 44.7 bits; conditional E-value: 3.5e-14
TIGR02857 445 pqgleteiGergagLSgGqrqRlaLArallrda...pllllDEPtahLDaeteaevlealrela.egrtvllvaHrlalaeladkivvl 529
+ g+ ++G++++ LSgG+ qR+ L ll+++ + llDEPt L + ++++ l++l+ g+tvl + H+l ++ d+i++l
MMSYN1_0824 820 GLGY-IKLGQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNKLVdLGNTVLCIEHNLDFIKVSDHIIDL 907
4444.79************************999999***************************77********************986 PP
>> TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.1 0.0 0.00055 0.035 18 47 .. 13 42 .. 9 46 .. 0.92
2 ! 34.7 0.0 3.6e-11 2.3e-09 126 215 .. 474 563 .. 434 599 .. 0.82
3 ! 22.9 0.2 1.4e-07 8.8e-06 18 50 .. 624 656 .. 620 661 .. 0.92
4 ! 36.9 0.0 7.9e-12 5e-10 125 241 .. 814 936 .. 803 941 .. 0.83
Alignments for each domain:
== domain 1 score: 11.1 bits; conditional E-value: 0.00055
TIGR04521 18 kkalkdvsleiekgefvaiiGhtGsGKstl 47
++ lk+++le++k++++ G +GsGKs+l
MMSYN1_0824 13 EHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
678*************************98 PP
== domain 2 score: 34.7 bits; conditional E-value: 3.6e-11
TIGR04521 126 ealelvgldeellerspfeLSGGqkrrvAiagvLamepe..vLvlDEptaGLDpkgrkellellkklkkekgktvilvtHsmedvaeladrv 215
+ l+ vgl l+r++ +LSGG+ +r+ +a + + + vlDEp GL +k +++l+++lk+l++ g+t+i+v H+ + ++ +d +
MMSYN1_0824 474 NFLNEVGLGYLNLSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHLRDL-GNTLIVVEHDED-TMKSSDWI 563
57999***************************998886522459************************99.*********954.55555555 PP
== domain 3 score: 22.9 bits; conditional E-value: 1.4e-07
TIGR04521 18 kkalkdvsleiekgefvaiiGhtGsGKstliqh 50
++ lk+++++i+ ++f++i G +GsGKstl++
MMSYN1_0824 624 ENNLKNINVTIPLNKFITITGVSGSGKSTLLED 656
678***************************985 PP
== domain 4 score: 36.9 bits; conditional E-value: 7.9e-12
TIGR04521 125 kealelvgldeellerspfeLSGGqkrrvAiagvLame...pevLvlDEptaGLDpkgrkellellkklkkekgktvilvtHsmedvaeladrvivl. 218
+ ++ vgl l +++ +LSGG+ +r+ + L + + +lDEpt+GL k+l+ +l+kl + g+tv+++ H+++ ++++d++i l
MMSYN1_0824 814 E-TILEVGLGYIKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDL-GNTVLCIEHNLD-FIKVSDHIIDLg 908
3.44569999999999*****************998762225799*************************99.***********7.5689*****994 PP
TIGR04521 219 .....kkGkvvldgtpeevfkeeeelek 241
G+vv++gtpe+++++ + ++
MMSYN1_0824 909 pdggeYGGQVVVTGTPEQIINHPTSYTA 936
433333689*********9998877665 PP
>> TIGR02673 FtsE: cell division ATP-binding protein FtsE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.2 0.0 9.9e-05 0.0063 15 44 .. 13 42 .. 6 53 .. 0.88
2 ! 33.0 0.1 1.7e-10 1.1e-08 121 202 .. 475 559 .. 439 564 .. 0.86
3 ! 18.9 0.0 3.5e-06 0.00022 15 48 .. 624 657 .. 617 666 .. 0.88
4 ! 37.1 0.0 9.5e-12 6e-10 111 204 .. 806 902 .. 783 909 .. 0.84
Alignments for each domain:
== domain 1 score: 14.2 bits; conditional E-value: 9.9e-05
TIGR02673 15 veaLkdvslkiekgeflfltGasGaGkttl 44
+ Lk+++l++ k +++ tG sG+Gk++l
MMSYN1_0824 13 EHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
5789*************************8 PP
== domain 2 score: 33.0 bits; conditional E-value: 1.7e-10
TIGR02673 121 vlelvgled.kakalpeelsgGeqqRvaiaRaivnkPe..lllaDePtGnlDdelserildllkelnkrGttvivathdeelver 202
l+ vgl + ++++lsgGe qR+ +a+ i ++ + l + DeP l ++ + ++++ lk+l + G t+iv+ hde+ +++
MMSYN1_0824 475 FLNEVGLGYlNLSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDEDTMKS 559
5777888652567899*****************99865325578***********************************998765 PP
== domain 3 score: 18.9 bits; conditional E-value: 3.5e-06
TIGR02673 15 veaLkdvslkiekgeflfltGasGaGkttllkll 48
+ Lk+++++i +f+ +tG sG+Gk+tll +
MMSYN1_0824 624 ENNLKNINVTIPLNKFITITGVSGSGKSTLLEDI 657
5789***************************755 PP
== domain 4 score: 37.1 bits; conditional E-value: 9.5e-12
TIGR02673 111 eeeiqkrveevlelvgle.dkakalpeelsgGeqqRvaiaRaivnk...PelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervk 204
+i+++ e++le vgl k +++++lsgGe qR+ + +++k +++l DePt l + +r++ +l++l + G tv+ h+ ++++ ++
MMSYN1_0824 806 IPQIKQKLETILE-VGLGyIKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLDFIKVSD 902
5678889988886.788625999********************99833347****************************************9998655 PP
>> TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.6 0.1 0.001 0.066 14 45 .. 12 43 .. 5 49 .. 0.91
2 ! 29.4 0.0 1.9e-09 1.2e-07 119 209 .. 474 566 .. 459 597 .. 0.77
3 ! 19.1 0.3 2.6e-06 0.00016 14 46 .. 623 655 .. 616 684 .. 0.91
4 ! 32.8 0.0 1.8e-10 1.1e-08 123 228 .. 818 932 .. 799 941 .. 0.79
Alignments for each domain:
== domain 1 score: 10.6 bits; conditional E-value: 0.001
TIGR04520 14 ekkalkdvsleiekgefvaiiGhNGsGKsTla 45
+++ lk+++le+ k++ ++ G GsGKs la
MMSYN1_0824 12 REHNLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
5678*************************998 PP
== domain 2 score: 29.4 bits; conditional E-value: 1.9e-09
TIGR04520 119 ealkkvgleefr.kkepkkLSGGqkqrvaiagvlalepe..iiilDEatsmLDpkgrkevletvkklkkeekltvisitHdleeaveadrvivl 209
+ l++vgl ++ ++++++LSGG+ qr+ +a + + + + +lDE++ L +k +++++t+k+l++ + t+i++ Hd + + ++d ++ +
MMSYN1_0824 474 NFLNEVGLGYLNlSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHLRDL-GNTLIVVEHDEDTMKSSDWIVDI 566
4677888876542677899*************998665511559***********************965.56****************99865 PP
== domain 3 score: 19.1 bits; conditional E-value: 2.6e-06
TIGR04520 14 ekkalkdvsleiekgefvaiiGhNGsGKsTlak 46
+++ lk+++++i ++f++i G GsGKsTl
MMSYN1_0824 623 SENNLKNINVTIPLNKFITITGVSGSGKSTLLE 655
5778**************************965 PP
== domain 4 score: 32.8 bits; conditional E-value: 1.8e-10
TIGR04520 123 kvgleefr.kkepkkLSGGqkqrvaiagvlale...peiiilDEatsmLDpkgrkevletvkklkkeekltvisitHdleeaveadrvivle...... 210
+vgl ++ +++++LSGG+ qr+ +++ l + ++ +lDE+t+ L + k ++ +++kl + + tv+ i H+l+ + +d++i l
MMSYN1_0824 818 EVGLGYIKlGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDL-GNTVLCIEHNLDFIKVSDHIIDLGpdggey 914
455554431577899*************997652224799************************965.56*******************995333333 PP
TIGR04520 211 kgkivaegtpkeifskke 228
g++v +gtp++i+++ +
MMSYN1_0824 915 GGQVVVTGTPEQIINHPT 932
589**********98865 PP
>> TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.7 0.0 5.6e-05 0.0035 12 43 .. 11 42 .. 1 48 [. 0.86
2 ! 27.2 0.0 8.1e-09 5.1e-07 95 232 .. 439 588 .. 431 602 .. 0.71
3 ! 17.9 0.2 5.9e-06 0.00037 7 46 .. 617 656 .. 613 682 .. 0.88
4 ! 32.8 0.0 1.6e-10 1e-08 137 243 .. 825 939 .. 804 944 .. 0.88
Alignments for each domain:
== domain 1 score: 14.7 bits; conditional E-value: 5.6e-05
TIGR00972 12 gekealkdvnleikknkvtaliGpsGcGkstl 43
+ ++ lk+++le++knk++++ G sG+Gks+l
MMSYN1_0824 11 AREHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
56789*************************97 PP
== domain 2 score: 27.2 bits; conditional E-value: 8.1e-09
TIGR00972 95 pmsiydnvayglrlkgikdkkeldeiv.eesLkkaalwdevk...dklkksalsLsGGqqqrlciaralavePevlL..lDePtsaLDpiatekieel 186
+msi + + + l++ + +++++ ++v +e ++++ + +ev +l+++a++LsGG qr+ +a+ + + +L lDeP+ L + k+ ++
MMSYN1_0824 439 NMSISEQLDFLLNIDLTPTQATIAKLVlDEIISRTNFLNEVGlgyLNLSRTATTLSGGESQRIRLAKQIGSQLTGILyvLDEPSIGLHQKDNDKLIKT 536
577777777777777777777776665245566677777775222589*********************98876554349****************** PP
TIGR00972 187 iqeLkkk.ytivivthnmqqaarvsdktaff......leGelveegeteqife 232
+++L++ t+++v h+ + +++ sd ++ + + Ge++ +g+ ++i++
MMSYN1_0824 537 LKHLRDLgNTLIVVEHD-EDTMKSSDWIVDIgprageYGGEITFSGTYQDILK 588
*****986899999997.44555666555444444446666666666666655 PP
== domain 3 score: 17.9 bits; conditional E-value: 5.9e-06
TIGR00972 7 lklfygekealkdvnleikknkvtaliGpsGcGkstllrs 46
++++ ++++ lk++n+ i+ nk +++ G sG+Gkstll
MMSYN1_0824 617 IEIIGASENNLKNINVTIPLNKFITITGVSGSGKSTLLED 656
5566677889***************************975 PP
== domain 4 score: 32.8 bits; conditional E-value: 1.6e-10
TIGR00972 137 klkksalsLsGGqqqrlciaralave...PevlLlDePtsaLDpiatekieeliqeLkkk.ytivivthnmqqaarvsdktaff......leGelvee 224
kl ++a++LsGG qr+ ++ l + ++LlDePt L ++++ ++++L + t++ + hn+++ ++vsd+++ + + G++v +
MMSYN1_0824 825 KLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLgNTVLCIEHNLDF-IKVSDHIIDLgpdggeYGGQVVVT 921
6889****************9986542226799************************99769*********98.68******99999999******** PP
TIGR00972 225 geteqifekpkekktedyi 243
g++eqi+++p++ t++y+
MMSYN1_0824 922 GTPEQIINHPTS-YTAKYL 939
*********975.456665 PP
>> TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.7 0.0 0.00012 0.0076 15 44 .. 13 42 .. 8 48 .. 0.92
2 ! 25.3 0.0 3.3e-08 2.1e-06 124 210 .. 470 558 .. 437 591 .. 0.80
3 ! 20.9 0.2 7.5e-07 4.7e-05 14 48 .. 623 657 .. 617 694 .. 0.85
4 ! 26.5 0.0 1.4e-08 8.8e-07 123 234 .. 809 928 .. 786 933 .. 0.77
Alignments for each domain:
== domain 1 score: 13.7 bits; conditional E-value: 0.00012
TIGR02315 15 kqalknvnleikkGelvaviGlsGaGkstl 44
++ lkn++le+ k +l++ GlsG+Gks l
MMSYN1_0824 13 EHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
689*************************98 PP
== domain 2 score: 25.3 bits; conditional E-value: 3.3e-08
TIGR02315 124 ekAlelLervglaelaakr.adqLsGGqqqRvaiaRalaqqpklil..aDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlak 210
+ L++vgl l +r a +LsGG+ qR+ +a+ + q + il DEP L +k +++++lk++ + g t iv H+ d k
MMSYN1_0824 470 ISRTNFLNEVGLGYLNLSRtATTLSGGESQRIRLAKQIGSQLTGILyvLDEPSIGLHQKDNDKLIKTLKHLR-DLGNTLIVVEHDEDTMK 558
55578999****99998884679***************99987555337*********************95.67778888778766544 PP
== domain 3 score: 20.9 bits; conditional E-value: 7.5e-07
TIGR02315 14 gkqalknvnleikkGelvaviGlsGaGkstllrsi 48
++ lkn+n++i +++++ G sG+Gkstll i
MMSYN1_0824 623 SENNLKNINVTIPLNKFITITGVSGSGKSTLLEDI 657
5789****************************876 PP
== domain 4 score: 26.5 bits; conditional E-value: 1.4e-08
TIGR02315 123 kekAlelLervglaela.akradqLsGGqqqRvaiaRalaqqp...klilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadri 216
++ le++ +vgl + + a +LsGG+ qR+ ++ l+++ ++ l DEP++ L k+++ +l ++ + g tv++ H++d+ k +d+i
MMSYN1_0824 809 IKQKLETILEVGLGYIKlGQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNKLV-DLGNTVLCIEHNLDFIK-VSDHI 904
4556777777888765415889****************998752337*************************97.6899**********986.69999 PP
TIGR02315 217 vgl......kageivfdgasseld 234
+ l g++v g+++++
MMSYN1_0824 905 IDLgpdggeYGGQVVVTGTPEQII 928
988322222246777777777765 PP
>> TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 0.0 0.5 31 16 43 .. 15 42 .. 3 47 .. 0.87
2 ! 32.6 0.0 1.8e-10 1.1e-08 122 248 .. 476 610 .. 450 611 .. 0.80
3 ! 8.7 0.0 0.0034 0.21 17 47 .. 627 657 .. 616 674 .. 0.89
4 ! 39.6 0.0 1.3e-12 7.9e-11 134 225 .. 829 928 .. 818 937 .. 0.87
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.5
TIGR03873 16 ivddvdvtaPaGaltgllGPnGsGkstl 43
++++d++ P+ +l G GsGks l
MMSYN1_0824 15 NLKNIDLELPKNKLIVFTGLSGSGKSSL 42
57899*********************98 PP
== domain 2 score: 32.6 bits; conditional E-value: 1.8e-10
TIGR03873 122 larvelssla.drdlstlsGGerqrvhlaralaqe.Pk.lllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvld..... 211
l +v+l l +r+ +tlsGGe+qr++la+ + + l +ldeP l + +l++ +++l + g t +v hd + +++ +d +v ++
MMSYN1_0824 476 LNEVGLGYLNlSRTATTLSGGESQRIRLAKQIGSQlTGiLYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDED-TMKSSDWIVDIGprage 572
566666666438*******************975524425699*****99999999999999999888**********65.68889999987544444 PP
TIGR03873 212 .gGrvvaaGppaevltpeliaavyGvdatvlthPetgr 248
gG + +G+ +++l + i+ y + + + P+t+r
MMSYN1_0824 573 yGGEITFSGTYQDILKSDTITGRYLSRKEGIVVPKTRR 610
47999999999999999999988887777777777765 PP
== domain 3 score: 8.7 bits; conditional E-value: 0.0034
TIGR03873 17 vddvdvtaPaGaltgllGPnGsGkstllrll 47
+++++vt P + ++ G GsGkstll +
MMSYN1_0824 627 LKNINVTIPLNKFITITGVSGSGKSTLLEDI 657
67899***********************755 PP
== domain 4 score: 39.6 bits; conditional E-value: 1.3e-12
TIGR03873 134 dlstlsGGerqrvhlaralaqe...PklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvld......gGrvvaaGppa 222
+ +tlsGGe+qr++l+ l ++ +++lldePt l v l++++++l++ g tv+ h+l++ ++v+dh++ l+ gG+vv +G+p+
MMSYN1_0824 829 NATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLDF-IKVSDHIIDLGpdggeyGGQVVVTGTPE 925
679*************9987652234799**************************************98.689******96555555799*******9 PP
TIGR03873 223 evl 225
+++
MMSYN1_0824 926 QII 928
987 PP
>> TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.5 0.0 0.005 0.31 349 378 .. 13 43 .. 5 48 .. 0.88
2 ! 29.2 0.1 1.3e-09 8.4e-08 465 529 .. 486 553 .. 476 554 .. 0.86
3 ! 14.7 0.0 3.4e-05 0.0021 349 380 .. 624 656 .. 615 688 .. 0.88
4 ! 34.2 0.1 4e-11 2.6e-09 463 530 .] 824 895 .. 808 895 .. 0.86
Alignments for each domain:
== domain 1 score: 7.5 bits; conditional E-value: 0.005
TIGR02868 349 e.vlkgvsldlepGervavvGasGaGKstLl 378
e lk+++l+l++ + + +G sG+GKs L+
MMSYN1_0824 13 EhNLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
44799************************97 PP
== domain 2 score: 29.2 bits; conditional E-value: 1.3e-09
TIGR02868 465 lgeggarlSGGerqRlalARaLladap..vllLDEPtehLDaeteeelledLl.aaeegrtvvlvthr 529
l ++++lSGGe qR+ lA+ + ++ + +LDEP+++L +++++l+++L + g+t ++v h+
MMSYN1_0824 486 LSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKhLRDLGNTLIVVEHD 553
67899*****************9886533569********************9555668888999886 PP
== domain 3 score: 14.7 bits; conditional E-value: 3.4e-05
TIGR02868 349 e.vlkgvsldlepGervavvGasGaGKstLlal 380
e lk+++++++ + ++++G sG+GKstLl+
MMSYN1_0824 624 EnNLKNINVTIPLNKFITITGVSGSGKSTLLED 656
33799*************************974 PP
== domain 4 score: 34.2 bits; conditional E-value: 4e-11
TIGR02868 463 tklgeggarlSGGerqRlalARaLl...adapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthrl 530
klg+++++lSGGe qR+ l Ll + + lLDEPt +L +++ ++l+ L+ ++ g+tv+ + h+l
MMSYN1_0824 824 IKLGQNATTLSGGESQRIKLSTYLLkkqTGNTMFLLDEPTTGLHVDDVKRLIGVLNkLVDLGNTVLCIEHNL 895
4799*********************66556789***********************66899*********86 PP
>> TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.6 0.0 0.037 2.3 6 34 .. 14 42 .. 10 49 .. 0.90
2 ! 33.7 0.0 9e-11 5.7e-09 112 188 .. 476 555 .. 463 557 .. 0.84
3 ! 11.5 0.1 0.00057 0.036 6 37 .. 625 656 .. 621 664 .. 0.90
4 ! 28.7 0.0 2.9e-09 1.8e-07 123 189 .. 828 897 .. 803 898 .. 0.85
Alignments for each domain:
== domain 1 score: 5.6 bits; conditional E-value: 0.037
TIGR01166 6 evlkglnlavergevlallGanGaGkstl 34
+ lk+++l++ + + +++ G G+Gks l
MMSYN1_0824 14 HNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
569************************98 PP
== domain 2 score: 33.7 bits; conditional E-value: 9e-11
TIGR01166 112 laavdisgle.erpthllsgGekkrvaiagava..lrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
l+ v++ l+ +r++ +lsgGe +r+ +a + l + +ldeP+ gl ++ +++l+++l++lr+ G+t+++ hd d
MMSYN1_0824 476 LNEVGLGYLNlSRTATTLSGGESQRIRLAKQIGsqLTGILYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDED 555
6666666665368899**************997224556779************************************76 PP
== domain 3 score: 11.5 bits; conditional E-value: 0.00057
TIGR01166 6 evlkglnlavergevlallGanGaGkstlllh 37
+ lk++n+++ + +++ G G+Gkstll+
MMSYN1_0824 625 NNLKNINVTIPLNKFITITGVSGSGKSTLLED 656
569**************************975 PP
== domain 4 score: 28.7 bits; conditional E-value: 2.9e-09
TIGR01166 123 rpthllsgGekkrvaiagavalrp...dvllldePtagldpaGaeqlleilrklreeGktvvisthdvdl 189
+ + +lsgGe +r+ +++ + + ++lldePt+gl + +++l+ +l+kl++ G+tv+ h++d+
MMSYN1_0824 828 QNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLDF 897
56779************99987642226899***********************************9986 PP
>> TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.1 0.0 0.00079 0.05 16 47 .. 11 42 .. 7 72 .. 0.89
2 ! 29.0 0.0 2.7e-09 1.7e-07 117 214 .. 467 566 .. 425 569 .. 0.84
3 ! 11.4 0.1 0.00066 0.042 21 49 .. 627 655 .. 621 662 .. 0.90
4 ! 26.8 0.0 1.3e-08 8.3e-07 122 214 .. 812 907 .. 787 912 .. 0.85
Alignments for each domain:
== domain 1 score: 11.1 bits; conditional E-value: 0.00079
TIGR02982 16 lrkqvlfdinleiepgeiviltGpsGsGkttl 47
+r++ l++i+le+ ++ ++++tG sGsGk l
MMSYN1_0824 11 AREHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
577889***********************987 PP
== domain 2 score: 29.0 bits; conditional E-value: 2.7e-09
TIGR02982 117 eakakaeelleavglee.rldykpedlsgGqkqrvaiaralvarPk..lvladePtaaldkksgrevvellqklareqgttillvthdnrildvadri 211
++ + +++l++vgl+ +l+++++ lsgG qr+ +a+ + ++ l + deP l +k ++++ l++l r+ g t+++v hd+ ++ +d i
MMSYN1_0824 467 DEIISRTNFLNEVGLGYlNLSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHL-RDLGNTLIVVEHDEDTMKSSDWI 563
555666789******986899********************99876225568*******************987.89****************99999 PP
TIGR02982 212 vkm 214
v +
MMSYN1_0824 564 VDI 566
975 PP
== domain 3 score: 11.4 bits; conditional E-value: 0.00066
TIGR02982 21 lfdinleiepgeiviltGpsGsGkttllt 49
l++in++i + + +tG sGsGk tll
MMSYN1_0824 627 LKNINVTIPLNKFITITGVSGSGKSTLLE 655
899************************97 PP
== domain 4 score: 26.8 bits; conditional E-value: 1.3e-08
TIGR02982 122 aeelleavglee.rldykpedlsgGqkqrvaiaralvar...PklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkm 214
e + +vgl+ +l ++++ lsgG qr+ ++ l ++ + l dePt+ l + + ++ +l+kl + g t+l + h+ ++v+d i+ +
MMSYN1_0824 812 KLETILEVGLGYiKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLV-DLGNTVLCIEHNLDFIKVSDHIIDL 907
3445557889876999*******************9987333479***********************997.789*******************986 PP
>> TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.2 0.0 0.00035 0.022 18 56 .. 10 49 .. 6 59 .. 0.86
2 ! 25.0 0.0 4.1e-08 2.6e-06 147 212 .. 490 557 .. 460 564 .. 0.88
3 ! 15.1 0.0 4.4e-05 0.0028 19 55 .. 622 658 .. 617 697 .. 0.83
4 ! 24.5 0.0 5.9e-08 3.7e-06 147 208 .. 830 894 .. 790 906 .. 0.88
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 0.00035
TIGR02324 18 GvklpvlkevsleveaGelvalsGksGaGkstl.lkslya 56
G + + lk+++le+ + +l++++G sG+Gks+l + ++y+
MMSYN1_0824 10 GAREHNLKNIDLELPKNKLIVFTGLSGSGKSSLaFSTIYQ 49
7778899*************************84466776 PP
== domain 2 score: 25.0 bits; conditional E-value: 4.1e-08
TIGR02324 147 PatfsGGekqRvniaraliadrPiLL..LdePtasLdaanrkvvvelikeakargaaligifhdeevr 212
+t sGGe qR+ +a+ + ++ +L LdeP L++++ + ++ +k+++ g +li + hde++
MMSYN1_0824 490 ATTLSGGESQRIRLAKQIGSQLTGILyvLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDEDTM 557
58**************9988765443349***********************************9875 PP
== domain 3 score: 15.1 bits; conditional E-value: 4.4e-05
TIGR02324 19 vklpvlkevsleveaGelvalsGksGaGkstllksly 55
+ + lk++++++ ++++++G sG+Gkstll +
MMSYN1_0824 622 ASENNLKNINVTIPLNKFITITGVSGSGKSTLLEDIV 658
5667899**************************8763 PP
== domain 4 score: 24.5 bits; conditional E-value: 5.9e-08
TIGR02324 147 PatfsGGekqRvniaraliadr...PiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208
+t sGGe qR+ ++ l++++ + LLdePt+ L+ + k + +++++ g +++ i h+
MMSYN1_0824 830 ATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHN 894
38****************9976333699**********************************997 PP
>> TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.3 0.0 0.00065 0.041 486 517 .. 12 43 .. 4 53 .. 0.88
2 ! 23.0 0.1 9.2e-08 5.8e-06 593 698 .. 475 589 .. 440 597 .. 0.79
3 ! 20.1 0.4 7.1e-07 4.5e-05 484 557 .. 621 695 .. 616 697 .. 0.66
4 ! 30.0 0.0 7.3e-10 4.6e-08 587 702 .. 806 934 .. 790 940 .. 0.76
Alignments for each domain:
== domain 1 score: 10.3 bits; conditional E-value: 0.00065
TIGR01193 486 gsevledislkikknekitlvGlsGsGkstla 517
++ l++i+l++ kn+ i+ GlsGsGks+la
MMSYN1_0824 12 REHNLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
56779*************************98 PP
== domain 2 score: 23.0 bits; conditional E-value: 9.2e-08
TIGR01193 593 dieklplGyqtelseeassisgGqkqrlalarallsdsk..vlildestsnldlltekkivenllklkd..ktiifvahrlsvakksdkiivld.... 682
++++ lGy +ls a+++sgG qr+ la+ + s+ +++lde + l + k+++ l +l+d t+i v h + k sd i+ +
MMSYN1_0824 475 FLNEVGLGY-LNLSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHLRDlgNTLIVVEHDEDTMKSSDWIVDIGprag 571
456777888.58**********************9875422679***********************98667******************98742222 PP
TIGR01193 683 ..eGkiieqGshkellke 698
G+i +G+++++lk+
MMSYN1_0824 572 eyGGEITFSGTYQDILKS 589
224678888888888876 PP
== domain 3 score: 20.1 bits; conditional E-value: 7.1e-07
TIGR01193 484 GygsevledislkikknekitlvGlsGsGkstlakllv.kffqaesGeillngkslkdidkhelrqlinylPqeP 557
G +++ l++i+++i n+ it+ G+sGsGkstl +v k +++ + l ++k+i+ e + y+ qeP
MMSYN1_0824 621 GASENNLKNINVTIPLNKFITITGVSGSGKSTLLEDIVyKGIHNNLSKEYLPIGKVKEIKGIENINKAIYISQEP 695
678899***************************987762222233333333334444444333333334666666 PP
== domain 4 score: 30.0 bits; conditional E-value: 7.3e-10
TIGR01193 587 iaeikddiek.lplGyq.telseeassisgGqkqrlalarallsd...skvlildestsnldlltekkiv...enllklkdktiifvahrlsvakksd 676
i +ik+ +e l++G+ +l ++a+++sgG qr+ l+ ll + +++lde t+ l + k+++ ++l+ l t++ + h l+ k sd
MMSYN1_0824 806 IPQIKQKLETiLEVGLGyIKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIgvlNKLVDL-GNTVLCIEHNLDFIKVSD 902
55666666652344443269**********************975222679**********999888876222666666.68**************** PP
TIGR01193 677 kiivld......eGkiieqGshkellkenGfy 702
+ii l G+++ +G+ ++++++ y
MMSYN1_0824 903 HIIDLGpdggeyGGQVVVTGTPEQIINHPTSY 934
***99532332247899999999999876655 PP
>> TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.2 0.0 1.8 1.1e+02 17 44 .. 15 42 .. 3 47 .. 0.90
2 ! 32.5 0.0 2.5e-10 1.6e-08 76 240 .. 422 597 .. 403 599 .. 0.77
3 ? 6.1 0.1 0.029 1.8 17 49 .. 626 658 .. 615 670 .. 0.87
4 ! 37.2 0.0 8.9e-12 5.6e-10 89 214 .. 783 907 .. 761 939 .. 0.71
Alignments for each domain:
== domain 1 score: 0.2 bits; conditional E-value: 1.8
TIGR03411 17 alndlslsveegelrviiGpnGaGkttl 44
l++++l++ +++l v G G+Gk+ l
MMSYN1_0824 15 NLKNIDLELPKNKLIVFTGLSGSGKSSL 42
6899*********************976 PP
== domain 2 score: 32.5 bits; conditional E-value: 2.5e-10
TIGR03411 76 rlGigRkfqkpsvfe..eltvlenlelalkadksvlallfarlskeekerieevleligLee.kadkkaglLshGqkqwLeigmllvqepk..llllD 168
+ ++ k + s+f+ ++++ e l+ l+ d + +++ +a+l +e + ++ l+ +gL + +++a++Ls G+ q++ ++ + + + l +lD
MMSYN1_0824 422 DIALSVKINEKSIFDytNMSISEQLDFLLNIDLTPTQATIAKLVLDEIISRTNFLNEVGLGYlNLSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLD 519
5556667777777643388999********99999999999999999999999*******87367899***************99976644225579* PP
TIGR03411 169 ePvaGmtdeetektaellkelak.ersvvvvehDmefvrelaekvtv.....lheGkvlaeGsldevqadekvievYL 240
eP G+ +++++k + lk+l++ ++++vvehD + +++ + v + G++ G+ +++ + + + YL
MMSYN1_0824 520 EPSIGLHQKDNDKLIKTLKHLRDlGNTLIVVEHDEDTMKSSDWIVDIgpragEYGGEITFSGTYQDILKSDTITGRYL 597
*********************974799********9999988777662111123456666666666666666666665 PP
== domain 3 score: 6.1 bits; conditional E-value: 0.029
TIGR03411 17 alndlslsveegelrviiGpnGaGkttllDvit 49
l+++++++ +++ +i G G+Gk+tll+ i+
MMSYN1_0824 626 NLKNINVTIPLNKFITITGVSGSGKSTLLEDIV 658
6899************************97665 PP
== domain 4 score: 37.2 bits; conditional E-value: 8.9e-12
TIGR03411 89 feeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqe...pkllllDePvaGmtdeetekta 183
+++ ++++ l++++++ +++++ + k+++e++le+ k ++a++Ls G+ q+++++ l+++ +++llDeP++G+ ++ ++
MMSYN1_0824 783 YKNKSIADVLNMSVSEAYVFFENI-----PQIKQKLETILEVGLGYIKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLI 875
566667777777776666655555.....5556666666654333456678899************98877652234799***********9999988 PP
TIGR03411 184 ellkelak.ersvvvvehDmefvrelaekvtv 214
+l++l + ++v+ +eh+++f++ ++ +
MMSYN1_0824 876 GVLNKLVDlGNTVLCIEHNLDFIKVSDHIIDL 907
88877655389************987766654 PP
>> TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.1 0.1 0.00076 0.048 19 48 .. 14 43 .. 5 47 .. 0.89
2 ! 25.3 0.0 3.5e-08 2.2e-06 123 209 .. 473 561 .. 449 568 .. 0.84
3 ! 15.2 0.1 4.4e-05 0.0028 19 49 .. 625 655 .. 614 672 .. 0.89
4 ! 22.6 0.0 2.3e-07 1.5e-05 124 213 .. 815 906 .. 800 911 .. 0.81
Alignments for each domain:
== domain 1 score: 11.1 bits; conditional E-value: 0.00076
TIGR02211 19 evlkgvsleiekgelvaivGssGsGkstll 48
+ lk+++le+ k +l+ +G sGsGks l
MMSYN1_0824 14 HNLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
569************************985 PP
== domain 2 score: 25.3 bits; conditional E-value: 3.5e-08
TIGR02211 123 kellekvglek.rinkkpselsGGerqrvaiaralvnkPklvl..adePtgnldkktakkifelllelnkekntallvvthdlelakkld 209
+++l++vgl +++ ++ lsGGe qr+ +a+ + ++ + +l deP l +k +k+ + l++l+ ++ +l+vv hd++ +k d
MMSYN1_0824 473 TNFLNEVGLGYlNLSRTATTLSGGESQRIRLAKQIGSQLTGILyvLDEPSIGLHQKDNDKLIKTLKHLRD-LGNTLIVVEHDEDTMKSSD 561
5789999998636888999****************99987554227*********************975.66679******99888766 PP
== domain 3 score: 15.2 bits; conditional E-value: 4.4e-05
TIGR02211 19 evlkgvsleiekgelvaivGssGsGkstllh 49
+ lk++++ i + ++i+G sGsGkstll
MMSYN1_0824 625 NNLKNINVTIPLNKFITITGVSGSGKSTLLE 655
5699*************************95 PP
== domain 4 score: 22.6 bits; conditional E-value: 2.3e-07
TIGR02211 124 ellekvglek.rinkkpselsGGerqrvaiaralvnk...PklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvle 213
++ +vgl ++ ++++ lsGGe qr+ ++ l++k ++ l dePt+ l + k++ +l++l nt +l + h+l+++k d+ +
MMSYN1_0824 815 TI-LEVGLGYiKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNT-VLCIEHNLDFIKVSDHIID 906
44.4577764389999******************9872324699***********************9776665.67789******99888766 PP
>> TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.8 0.0 0.0019 0.12 328 361 .. 10 43 .. 2 49 .. 0.88
2 ! 27.4 0.0 4.4e-09 2.8e-07 448 524 .. 486 564 .. 474 589 .. 0.87
3 ! 13.9 0.2 5.5e-05 0.0035 308 365 .. 603 658 .. 591 667 .. 0.77
4 ! 23.6 0.0 6.1e-08 3.9e-06 435 526 .. 814 907 .. 805 930 .. 0.85
Alignments for each domain:
== domain 1 score: 8.8 bits; conditional E-value: 0.0019
TIGR01842 328 eekkktlkgisfalkaGealaiiGpsgsGkssLa 361
+++++ lk+i+++l + + ++ G sgsGkssLa
MMSYN1_0824 10 GAREHNLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
456789***************************8 PP
== domain 2 score: 27.4 bits; conditional E-value: 4.4e-09
TIGR01842 448 igegGaaLsgGqrqRiaLaRalygd..PklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkil 524
++ + ++LsgG qRi La+ + + l vLDeP L ++ + l+k lk+l+ + t +v+ h +++ d i+
MMSYN1_0824 486 LSRTATTLSGGESQRIRLAKQIGSQltGILYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDEDTMKSSDWIV 564
5677899*************99776225799*************************************99999999886 PP
== domain 3 score: 13.9 bits; conditional E-value: 5.5e-05
TIGR01842 308 lklPepegelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllv 365
+ +P+ + + +++++ ++e + lk+i++++ ++++i G sgsGks+L +v
MMSYN1_0824 603 IVVPKTRRGGNGKKIEIIGASE--NNLKNINVTIPLNKFITITGVSGSGKSTLLEDIV 658
5555555555556666665555..58***************************98776 PP
== domain 4 score: 23.6 bits; conditional E-value: 6.1e-08
TIGR01842 435 elilrlpkGYdteigegGaaLsgGqrqRiaLaRalygd...PklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvl 526
e il++ GY ++g++ ++LsgG qRi L l + ++ +LDeP + L + + l+ l++l + tv+ i h +++ d+i+ l
MMSYN1_0824 814 ETILEVGLGY-IKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLDFIKVSDHIIDL 907
7788888999.689*******************999872224799**********************************************9866 PP
>> TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.0 0.0 0.0054 0.34 473 500 .. 16 43 .. 9 49 .. 0.92
2 ! 18.8 0.0 1.5e-06 9.2e-05 570 683 .. 470 591 .. 441 601 .. 0.78
3 ! 14.1 0.1 3.9e-05 0.0024 472 500 .. 626 654 .. 620 659 .. 0.90
4 ! 28.0 0.0 2.5e-09 1.6e-07 573 688 .. 813 937 .. 783 941 .. 0.79
Alignments for each domain:
== domain 1 score: 7.0 bits; conditional E-value: 0.0054
TIGR01846 473 lsnlsldikaGeviGivGpsGsGkstlt 500
l+n+ l++++ ++i +G sGsGks l+
MMSYN1_0824 16 LKNIDLELPKNKLIVFTGLSGSGKSSLA 43
89***********************996 PP
== domain 2 score: 18.8 bits; conditional E-value: 1.5e-06
TIGR01846 570 aGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPr.il.ildeatsaldyeseavimrnlreick.grtviiiahrlstvraadrilvl 664
+f++e+ Gy +++ ++lsGG qri la+ + ++ il +lde l + ++ + + l+++ g t+i++ h +t++++d i+ +
MMSYN1_0824 470 ISRTNFLNEVGLGYL-NLSRTATTLSGGESQRIRLAKQIGSQLTgILyVLDEPSIGLHQKDNDKLIKTLKHLRDlGNTLIVVEHDEDTMKSSDWIVDI 566
455688888888985.6889999***************98875435449********9999988888998886449*******************988 PP
TIGR01846 665 e......kGkivesGkheellakeg 683
G+i sG+++++l++++
MMSYN1_0824 567 GprageyGGEITFSGTYQDILKSDT 591
5222223588999999999998865 PP
== domain 3 score: 14.1 bits; conditional E-value: 3.9e-05
TIGR01846 472 vlsnlsldikaGeviGivGpsGsGkstlt 500
l+n+++ i+ ++i i+G sGsGkstl
MMSYN1_0824 626 NLKNINVTIPLNKFITITGVSGSGKSTLL 654
599************************95 PP
== domain 4 score: 28.0 bits; conditional E-value: 2.5e-09
TIGR01846 573 hdfiselkqGyetevgekGaalsGGqrqrialaralvan...Prilildeatsaldyeseavimrnlreick.grtviiiahrlstvraadrilvle. 665
+ i e+ Gy ++g++ ++lsGG qri l+ l+++ +++lde t+ l + + + l+++ g tv++i h l+ ++ +d+i+ l
MMSYN1_0824 813 LETILEVGLGY-IKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDlGNTVLCIEHNLDFIKVSDHIIDLGp 909
56677777788.479999******************9862225799************9999999999876449********************9953 PP
TIGR01846 666 .....kGkivesGkheellakeglyakl 688
G++v G+ e+++++ + y+
MMSYN1_0824 910 dggeyGGQVVVTGTPEQIINHPTSYTAK 937
2333348999999999999998888765 PP
>> TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.5 0.0 0.0038 0.24 18 46 .. 14 42 .. 3 47 .. 0.91
2 ! 24.9 0.0 3.9e-08 2.4e-06 130 207 .. 488 565 .. 459 590 .. 0.80
3 ! 11.7 0.0 0.0004 0.025 18 50 .. 625 657 .. 615 666 .. 0.89
4 ! 22.4 0.0 2.3e-07 1.4e-05 111 228 .. 809 933 .. 803 944 .. 0.79
Alignments for each domain:
== domain 1 score: 8.5 bits; conditional E-value: 0.0038
TIGR03265 18 talkdislsvkkgelvclLGPsGCGkttL 46
+ lk+i+l++ k+ l+ + G sG Gk++L
MMSYN1_0824 14 HNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
679************************98 PP
== domain 2 score: 24.9 bits; conditional E-value: 3.9e-08
TIGR03265 130 kyPgqlsGGqqqrvaLaralals..PglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivv 207
+ + lsGG qr+ La+ + + l +LDeP L k +kL + lk+l r lg t i+v hd e+ + +D iv
MMSYN1_0824 488 RTATTLSGGESQRIRLAKQIGSQltGILYVLDEPSIGLHQKDNDKLIKTLKHL-RDLGNTLIVVEHD-EDTMKSSDWIVD 565
55678*************997542155678**********************9.68**********9.567888998885 PP
== domain 3 score: 11.7 bits; conditional E-value: 0.0004
TIGR03265 18 talkdislsvkkgelvclLGPsGCGkttLLrii 50
+ lk+i++++ + ++++ G sG Gk+tLL i
MMSYN1_0824 625 NNLKNINVTIPLNKFITITGVSGSGKSTLLEDI 657
679**************************9755 PP
== domain 4 score: 22.4 bits; conditional E-value: 2.3e-07
TIGR03265 111 vaerveelLelvglsgse.ekyPgqlsGGqqqrvaLarala...lsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDr 204
+++++e++Le vgl + + + lsGG qr+ L+ l + ++LLDeP L ++L l+kl lg t + + h+ + + ++D+
MMSYN1_0824 809 IKQKLETILE-VGLGYIKlGQNATTLSGGESQRIKLSTYLLkkqTGNTMFLLDEPTTGLHVDDVKRLIGVLNKLV-DLGNTVLCIEHNLD-FIKVSDH 903
6677777777.45554441455678************99972224568*************************96.69*********987.799**** PP
TIGR03265 205 ivvmn......kgkieqvgtPeeiYeqPat 228
i+ + g++ +gtPe+i ++P++
MMSYN1_0824 904 IIDLGpdggeyGGQVVVTGTPEQIINHPTS 933
**984333333689**************76 PP
>> TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.5 0.0 0.0045 0.29 345 376 .. 12 43 .. 6 47 .. 0.90
2 ! 16.7 0.1 7.4e-06 0.00047 452 559 .. 475 590 .. 457 598 .. 0.80
3 ! 11.3 0.0 0.00032 0.02 343 377 .. 621 655 .. 615 660 .. 0.89
4 ! 32.1 0.0 1.7e-10 1.1e-08 462 564 .. 824 936 .. 794 942 .. 0.85
Alignments for each domain:
== domain 1 score: 7.5 bits; conditional E-value: 0.0045
TIGR02203 345 drealdsislkveaGevvalvGrsGsGkstlv 376
+ l++i+l++ + + + + G sGsGks+l+
MMSYN1_0824 12 REHNLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
56789************************996 PP
== domain 2 score: 16.7 bits; conditional E-value: 7.4e-06
TIGR02203 452 lvdklpeGldtevGengskLsGGqRqRlaiaRallkd.aPiL.iLDeatsaLDneseRlvqaaLerlmk.gRttlviahRLstiekaDrivvld.... 542
+++++ G ++ + ++ LsGG qR+ +a+ + + + iL +LDe L + + ++ ++L++l + g t +v+ h t++ +D iv +
MMSYN1_0824 475 FLNEVGLGY-LNLSRTATTLSGGESQRIRLAKQIGSQlTGILyVLDEPSIGLHQKDNDKLIKTLKHLRDlGNTLIVVEHDEDTMKSSDWIVDIGprag 571
555555553.56778899***************97653455549***********999999******97477888999************98853322 PP
TIGR02203 543 ..dGkiverGtheeLlarn 559
G+i +Gt++++l+ +
MMSYN1_0824 572 eyGGEITFSGTYQDILKSD 590
2347899999999999876 PP
== domain 3 score: 11.3 bits; conditional E-value: 0.00032
TIGR02203 343 gddrealdsislkveaGevvalvGrsGsGkstlvn 377
g++ + l++i++++ + + + G sGsGkstl++
MMSYN1_0824 621 GASENNLKNINVTIPLNKFITITGVSGSGKSTLLE 655
567789**************************975 PP
== domain 4 score: 32.1 bits; conditional E-value: 1.7e-10
TIGR02203 462 tevGengskLsGGqRqRlaiaRallkd...aPiLiLDeatsaLDneseRlvqaaLerlmk.gRttlviahRLstiekaDrivvld......dGkiver 549
++G+n++ LsGG qR+ ++ llk + +LDe t+ L + +++ L++l + g t l i h L i+ +D+i+ l G++v +
MMSYN1_0824 824 IKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDlGNTVLCIEHNLDFIKVSDHIIDLGpdggeyGGQVVVT 921
579**********************97333479***********9998888899999986589*******************995323333489**** PP
TIGR02203 550 GtheeLlarnGlYas 564
Gt e+++++ Y+
MMSYN1_0824 922 GTPEQIINHPTSYTA 936
********9999986 PP
>> TIGR03375 type_I_sec_LssB: type I secretion system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.4 0.0 0.55 34 477 510 .. 10 43 .. 7 48 .. 0.91
2 ! 26.7 0.0 5.9e-09 3.8e-07 596 672 .. 485 564 .. 461 589 .. 0.86
3 ! 7.6 0.2 0.0037 0.23 478 511 .. 622 655 .. 616 663 .. 0.90
4 ! 35.2 0.0 1.7e-11 1.1e-09 596 690 .. 825 929 .. 819 934 .. 0.87
Alignments for each domain:
== domain 1 score: 0.4 bits; conditional E-value: 0.55
TIGR03375 477 eeekaaLknvslkikpGekvaiiGriGsGKstll 510
++++++Lkn+ l++ + G GsGKs+l+
MMSYN1_0824 10 GAREHNLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
678899********99999************995 PP
== domain 2 score: 26.7 bits; conditional E-value: 5.9e-09
TIGR03375 596 qigerGesLSgGQrqavalaRallkdpp..illLDEPtsalDnsseekllerLkella.dkTlvlvtHrtslLelvdrii 672
++ + LSgG q + la+ + ++ +++LDEP+ l ++ ++kl+++Lk+l ++Tl++v H + ++ d i+
MMSYN1_0824 485 NLSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHLRDlGNTLIVVEHDEDTMKSSDWIV 564
56677889**************98875432569************************99*********999998888776 PP
== domain 3 score: 7.6 bits; conditional E-value: 0.0037
TIGR03375 478 eekaaLknvslkikpGekvaiiGriGsGKstllk 511
+++++Lkn++++i + i G GsGKstll
MMSYN1_0824 622 ASENNLKNINVTIPLNKFITITGVSGSGKSTLLE 655
67899**************************975 PP
== domain 4 score: 35.2 bits; conditional E-value: 1.7e-11
TIGR03375 596 qigerGesLSgGQrqavalaRallkdp...pillLDEPtsalDnsseekllerLkella.dkTlvlvtHrtslLelvdriivld......kGrivadG 683
++g++ + LSgG q + l+ llk+ ++lLDEPt+ l ++l+ L++l+ ++T++ + H ++++ d+ii l G++v+ G
MMSYN1_0824 825 KLGQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNKLVDlGNTVLCIEHNLDFIKVSDHIIDLGpdggeyGGQVVVTG 922
56788999****************9863337****************************9*********************98433333358999999 PP
TIGR03375 684 pkdevle 690
+ +++++
MMSYN1_0824 923 TPEQIIN 929
9999987 PP
>> TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.5 0.0 0.0012 0.075 14 42 .. 14 42 .. 4 49 .. 0.90
2 ! 19.9 0.0 1.5e-06 9.7e-05 86 202 .. 439 564 .. 425 588 .. 0.74
3 ! 14.5 0.0 7e-05 0.0044 14 46 .. 625 657 .. 617 669 .. 0.88
4 ! 18.9 0.0 3.2e-06 0.0002 105 224 .. 807 933 .. 787 943 .. 0.79
Alignments for each domain:
== domain 1 score: 10.5 bits; conditional E-value: 0.0012
TIGR00968 14 qalddvdlevktGslvallGpsGsGkstl 42
+ l+++dle+++ +l+ + G sGsGks+l
MMSYN1_0824 14 HNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
5799***********************98 PP
== domain 2 score: 19.9 bits; conditional E-value: 1.5e-06
TIGR00968 86 hltvrdniafGleirkkdkakikak.v.......eellelvqleklg.drypsqlsGGqrqrvalaralavepq..vllldepfgaldakvrkelraw 172
+++++++ f l+i ++++++ ak v +++l+ v+l l+ +r + lsGG+ qr+ la+ + + + +ldep l k ++l +
MMSYN1_0824 439 NMSISEQLDFLLNIDLTPTQATIAKlVldeiisrTNFLNEVGLGYLNlSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKT 536
566677777777776433333322212221122246677788888764788899**************987754215579****************** PP
TIGR00968 173 lrklhdevkvttvfvthdqeealevadriv 202
l++l d + t ++v hd+ ++++ +d iv
MMSYN1_0824 537 LKHLRD-LGNTLIVVEHDE-DTMKSSDWIV 564
***986.788999999995.5677777666 PP
== domain 3 score: 14.5 bits; conditional E-value: 7e-05
TIGR00968 14 qalddvdlevktGslvallGpsGsGkstllrvi 46
+ l++++++++ +++++ G sGsGkstll i
MMSYN1_0824 625 NNLKNINVTIPLNKFITITGVSGSGKSTLLEDI 657
5799**************************865 PP
== domain 4 score: 18.9 bits; conditional E-value: 3.2e-06
TIGR00968 105 akikakveellel.vqleklgdrypsqlsGGqrqrvalaralave...pqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealeva 198
+ik+k+e +le+ ++ klg++ + lsGG+ qr+ l+ l + ++lldep + l k l l kl d + tv+ + + ++v+
MMSYN1_0824 807 PQIKQKLETILEVgLGYIKLGQN-ATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVD-LGN-TVLCIEHNLDFIKVS 901
57899999999975667777765.678************9886541225799**********9999999999999976.444.555555567899*** PP
TIGR00968 199 drivvl......ekGkieqvgsaeevydepat 224
d+i+ l G++ g++e++ ++p++
MMSYN1_0824 902 DHIIDLgpdggeYGGQVVVTGTPEQIINHPTS 933
****994333323589999***********86 PP
>> TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.1 0.0 0.45 28 354 382 .. 14 42 .. 9 49 .. 0.89
2 ! 20.9 0.0 4.5e-07 2.9e-05 456 563 .. 473 588 .. 449 597 .. 0.79
3 ! 7.3 0.0 0.0059 0.37 354 384 .. 625 655 .. 621 660 .. 0.91
4 ! 31.2 0.0 3.5e-10 2.2e-08 459 568 .. 816 934 .. 804 938 .. 0.83
Alignments for each domain:
== domain 1 score: 1.1 bits; conditional E-value: 0.45
TIGR02204 354 kaldgldltvrpGetvalvGPsGaGkstl 382
+ l+++dl++ + + + + G sG+Gks l
MMSYN1_0824 14 HNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
6799**********************987 PP
== domain 2 score: 20.9 bits; conditional E-value: 4.5e-07
TIGR02204 456 defisklpeGydtllGergvtLsGGqkqriaiarailkdap.iL.LLdeatsaLdaeseqlvqqaleelmk.grttlviahrLatvlkadrivvld.. 548
++f++++ Gy +l + tLsGG qri +a+ i + iL +Lde L + ++++ + l++l + g t +v+ h t++++d iv +
MMSYN1_0824 473 TNFLNEVGLGYL-NLSRTATTLSGGESQRIRLAKQIGSQLTgILyVLDEPSIGLHQKDNDKLIKTLKHLRDlGNTLIVVEHDEDTMKSSDWIVDIGpr 569
679999999996.68999******************88754254379**********99999999**9987367777889************977422 PP
TIGR02204 549 ....kGriveqGthaeLia 563
G+i +Gt++++++
MMSYN1_0824 570 ageyGGEITFSGTYQDILK 588
2222356666666666665 PP
== domain 3 score: 7.3 bits; conditional E-value: 0.0059
TIGR02204 354 kaldgldltvrpGetvalvGPsGaGkstlle 384
+ l+++++t+ + + + G sG+Gkstlle
MMSYN1_0824 625 NNLKNINVTIPLNKFITITGVSGSGKSTLLE 655
6799*************************97 PP
== domain 4 score: 31.2 bits; conditional E-value: 3.5e-10
TIGR02204 459 isklpeGydtllGergvtLsGGqkqriaiarailkda...piLLLdeatsaLdaeseqlvqqaleelmk.grttlviahrLatvlkadrivvl..d.. 548
i ++ Gy +lG+++ tLsGG qri ++ +lk++ ++LLde t+ L + +++ l++l++ g t l i h L ++ +d+i+ l d
MMSYN1_0824 816 ILEVGLGY-IKLGQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNKLVDlGNTVLCIEHNLDFIKVSDHIIDLgpDgg 912
55566677.479**********************98533379************************98758999*****************9944233 PP
TIGR02204 549 ..kGriveqGthaeLiakggLy 568
G++v +Gt +++i++ + y
MMSYN1_0824 913 eyGGQVVVTGTPEQIINHPTSY 934
3347999999999999876666 PP
>> TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.2 0.0 0.0054 0.34 3 32 .. 17 46 .. 15 102 .. 0.88
2 ! 15.5 0.0 3.2e-05 0.002 107 185 .. 476 553 .. 455 559 .. 0.82
3 ! 8.2 0.0 0.0053 0.34 3 28 .. 628 653 .. 626 695 .. 0.89
4 ! 28.3 0.0 3.8e-09 2.4e-07 119 226 .. 826 940 .. 795 943 .. 0.80
Alignments for each domain:
== domain 1 score: 8.2 bits; conditional E-value: 0.0054
TIGR02770 3 qdvnlslkrgkvlalvGesGsGksltalai 32
++++l+l ++k++ + G sGsGks a ++
MMSYN1_0824 17 KNIDLELPKNKLIVFTGLSGSGKSSLAFST 46
789********************9777654 PP
== domain 2 score: 15.5 bits; conditional E-value: 3.2e-05
TIGR02770 107 leavgLeeaeevlkkypfelsGGmlqRvmia..lallleaplliaDePttdlDvvvqaevLklleelrekrglgillithD 185
l++vgL l+ + lsGG qR+ +a + + l l + DeP+ l + + +++k+l++lr+ g +++++ hD
MMSYN1_0824 476 LNEVGLG--YLNLSRTATTLSGGESQRIRLAkqIGSQLTGILYVLDEPSIGLHQKDNDKLIKTLKHLRDL-GNTLIVVEHD 553
5566665..3347778899***********955566677778899**********************975.7778999999 PP
== domain 3 score: 8.2 bits; conditional E-value: 0.0053
TIGR02770 3 qdvnlslkrgkvlalvGesGsGkslt 28
+++n+++ +k +++ G sGsGks+
MMSYN1_0824 628 KNINVTIPLNKFITITGVSGSGKSTL 653
6899********************85 PP
== domain 4 score: 28.3 bits; conditional E-value: 3.8e-09
TIGR02770 119 lkkypfelsGGmlqRvmialallle...aplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavm......ekGkiver 207
l + + lsGG qR+ + ll + ++++ DePtt l v+ ++++ l++l++ g ++l i h+l + ++ d+++ + G++v +
MMSYN1_0824 826 LGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDL-GNTVLCIEHNLDFI-KVSDHIIDLgpdggeYGGQVVVT 921
6667889**********99888766222579999**********************975.788*********98.5777777663322223589**** PP
TIGR02770 208 gtvkelfqePkhettrkLl 226
gt+++++++P++ t++ L+
MMSYN1_0824 922 GTPEQIINHPTSYTAKYLK 940
**************99986 PP
>> TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.7 0.0 0.00038 0.024 7 35 .. 14 42 .. 9 47 .. 0.90
2 ? 4.3 0.7 0.066 4.2 5 82 .. 134 212 .. 130 234 .. 0.85
3 ! 16.9 0.0 9.8e-06 0.00062 114 219 .. 476 588 .. 448 597 .. 0.80
4 ! 9.5 0.1 0.0018 0.11 6 37 .. 624 655 .. 620 668 .. 0.89
5 ! 24.7 0.0 4.3e-08 2.7e-06 124 232 .. 827 941 .. 795 946 .] 0.77
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 0.00038
TIGR01186 7 lgvndvdleieeGeiiviiGlsGsGkstl 35
++++dle+ + +iv+ GlsGsGks+l
MMSYN1_0824 14 HNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
5689**********************976 PP
== domain 2 score: 4.3 bits; conditional E-value: 0.066
TIGR01186 5 lklgvndvdleieeGeiiviiGlsGs.GkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkial 82
k v++++ + +Ge i i+ + k t + +l++l + ++++d + + ++ +l + +r+ i +v+ +i
MMSYN1_0824 134 IKEIVENIKQSTSDGEQIHILSPVIRdKKGTHIDILEKLRNDGFIRVIVDDQLRMLDDQINLEKNQRHNIDIVVDRIIY 212
566799999999*******9999866157899*****************************************998865 PP
== domain 3 score: 16.9 bits; conditional E-value: 9.8e-06
TIGR01186 114 lklvdl.eeyedryPdelsGGmqqrvGlaralaaePd..lllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivil..... 203
l v+l r lsGG qr+ la+ + + l ++de+ l d+l + l++l++ l t++ + hd d +++ +d iv +
MMSYN1_0824 476 LNEVGLgYLNLSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHLRD-LGNTLIVVEHDED-TMKSSDWIVDIgprag 571
56666633334567789***************98865214469********************9975.899********76.79*****997734222 PP
TIGR01186 204 .kaGeivqvGtPdeilr 219
Gei Gt ++il+
MMSYN1_0824 572 eYGGEITFSGTYQDILK 588
22478888899999987 PP
== domain 4 score: 9.5 bits; conditional E-value: 0.0018
TIGR01186 6 klgvndvdleieeGeiiviiGlsGsGkstlvr 37
+ ++++++ i +i i G+sGsGkstl+
MMSYN1_0824 624 ENNLKNINVTIPLNKFITITGVSGSGKSTLLE 655
567899***********************975 PP
== domain 5 score: 24.7 bits; conditional E-value: 4.3e-08
TIGR01186 124 dryPdelsGGmqqrvGlaralaae...PdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivil......kaGeivqvG 212
+ lsGG qr+ l l + ++l+de+ + l + l l kl + l t++ i h+ld ++++d i+ l G++v G
MMSYN1_0824 827 GQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVD-LGNTVLCIEHNLD-FIKVSDHIIDLgpdggeYGGQVVVTG 922
566789***********99886542225799*******9988777889999999975.899*********9.69*******984333323589***** PP
TIGR01186 213 tPdeilrnPaneyveefiek 232
tP++i++ P+ y +++++
MMSYN1_0824 923 TPEQIINHPTS-YTAKYLKD 941
********974.66666554 PP
>> TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.7 0.0 0.034 2.1 12 43 .. 11 42 .. 1 51 [. 0.85
2 ! 15.4 0.0 3.6e-05 0.0022 127 220 .. 487 587 .. 459 599 .. 0.73
3 ! 9.5 0.0 0.0023 0.15 13 45 .. 623 655 .. 615 667 .. 0.88
4 ! 29.6 0.0 1.6e-09 1e-07 125 222 .. 825 930 .. 778 940 .. 0.82
Alignments for each domain:
== domain 1 score: 5.7 bits; conditional E-value: 0.034
TIGR03864 12 gkrralddvsltvakgefvaLLGpnGaGkstL 43
++++ l++++l+++k ++++ G+ G+Gks L
MMSYN1_0824 11 AREHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
566789************************98 PP
== domain 2 score: 15.4 bits; conditional E-value: 3.6e-05
TIGR03864 127 eekvreLnGGhrrrveiarallhePk..lLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhk......GkvlaqGaa 216
+ + +L+GG+ +r+ +a+ + + + l +lDe+++GL + ++l++++++l + g +++ h d ++++d +v + G+++++G+
MMSYN1_0824 487 SRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHLR-DLGNTLIVVEHDEDTMKSSDWIVDIGPrageygGEITFSGTY 583
344789*************987764422778********************9997.778788888888888888888776531122222566666666 PP
TIGR03864 217 aela 220
+++
MMSYN1_0824 584 QDIL 587
6665 PP
== domain 3 score: 9.5 bits; conditional E-value: 0.0023
TIGR03864 13 krralddvsltvakgefvaLLGpnGaGkstLfs 45
+++ l+++++t++ +f+ + G+ G+GkstL++
MMSYN1_0824 623 SENNLKNINVTIPLNKFITITGVSGSGKSTLLE 655
56789**************************86 PP
== domain 4 score: 29.6 bits; conditional E-value: 1.6e-09
TIGR03864 125 raeekvreLnGGhrrrveiarallhe...PklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlh......kGkvlaq 213
+ +++ +L+GG+ +r+ + ll + ++ LlDe+t GL ++ ++l+ +++lv + g +vL h +d ++ +d+++ l G+v+ +
MMSYN1_0824 825 KLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLV-DLGNTVLCIEHNLDFIKVSDHIIDLGpdggeyGGQVVVT 921
6677899*****************98333479*************************9.99*********************9953222225789999 PP
TIGR03864 214 Gaaaelaae 222
G+++++ ++
MMSYN1_0824 922 GTPEQIINH 930
998888765 PP
>> TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.2 0.0 0.16 9.8 15 39 .. 18 42 .. 7 47 .. 0.85
2 ! 22.5 0.0 2.2e-07 1.4e-05 114 195 .. 474 557 .. 462 606 .. 0.83
3 ! 8.8 0.0 0.0032 0.2 15 43 .. 629 657 .. 617 664 .. 0.87
4 ! 22.2 0.0 2.7e-07 1.7e-05 125 223 .. 826 931 .. 802 945 .. 0.78
Alignments for each domain:
== domain 1 score: 3.2 bits; conditional E-value: 0.16
TIGR02142 15 dvdlelpgkgvtalFGrsGsGktsl 39
++dlelp + ++ G sGsGk+sl
MMSYN1_0824 18 NIDLELPKNKLIVFTGLSGSGKSSL 42
5899********9**********98 PP
== domain 2 score: 22.5 bits; conditional E-value: 2.2e-07
TIGR02142 114 kvielLgiehL.leRlpgkLsGGekqRvaigRAlLssPe..LLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldev 195
+ ++ +g++ L l+R++++LsGGe qR+ +++ + s+ L ++DeP L +k ++++ L++l++ l ++ v H+ d +
MMSYN1_0824 474 NFLNEVGLGYLnLSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHLRD-LGNTLIVVEHDEDTM 557
55566677777699********************9986433899**********************986.566677888887766 PP
== domain 3 score: 8.8 bits; conditional E-value: 0.0032
TIGR02142 15 dvdlelpgkgvtalFGrsGsGktslirli 43
++++++p + +++ G+sGsGk++l++ i
MMSYN1_0824 629 NINVTIPLNKFITITGVSGSGKSTLLEDI 657
6899*********************9755 PP
== domain 4 score: 22.2 bits; conditional E-value: 2.7e-07
TIGR02142 125 leRlpgkLsGGekqRvaigRAlLss...PeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvle......dGrvkaa 213
l ++++LsGGe qR+ ++ lL + + l+DeP + L k ++ L++l + l +l + H+ld + +++d+++ l G+v +
MMSYN1_0824 826 LGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVD-LGNTVLCIEHNLDFI-KVSDHIIDLGpdggeyGGQVVVT 921
6778899****************77222579*************************86.7778********976.68999997742222224677777 PP
TIGR02142 214 gkleevlask 223
g++e++++++
MMSYN1_0824 922 GTPEQIINHP 931
7777777665 PP
>> TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.3 0.0 0.11 6.8 4 42 .. 4 42 .. 1 45 [. 0.85
2 ! 19.8 0.1 1.9e-06 0.00012 109 188 .. 473 554 .. 438 563 .. 0.79
3 ? 6.9 0.0 0.017 1.1 16 44 .. 627 655 .. 615 690 .. 0.89
4 ! 26.4 0.0 1.8e-08 1.2e-06 87 185 .. 793 893 .. 770 903 .. 0.84
Alignments for each domain:
== domain 1 score: 4.3 bits; conditional E-value: 0.11
TIGR01189 4 eelaveRgervlleglsfelaaGealvveGpnGiGKttL 42
++++++ ++ l+++++el +++v +G G+GK++L
MMSYN1_0824 4 DKIIIKGAREHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
55666666777899***********************98 PP
== domain 2 score: 19.8 bits; conditional E-value: 1.9e-06
TIGR01189 109 eealekvgLsgle.dlpvaqLsAGqkrRlalarLllskap..lWiLDEPttalDkegvellaellaaHlargGivllathqdl 188
++ l++vgL l+ + +++Ls G +R+ la+ + s+ + l++LDEP + l ++ ++l ++l+ Hl+ G +l+ +d
MMSYN1_0824 473 TNFLNEVGLGYLNlSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLK-HLRDLGNTLIVVEHDE 554
56789999987763678999**************999865449******************99996.7777777766655544 PP
== domain 3 score: 6.9 bits; conditional E-value: 0.017
TIGR01189 16 leglsfelaaGealvveGpnGiGKttLLR 44
l+++++++ +++ ++G G+GK+tLL
MMSYN1_0824 627 LKNINVTIPLNKFITITGVSGSGKSTLLE 655
778889999999***************95 PP
== domain 4 score: 26.4 bits; conditional E-value: 1.8e-08
TIGR01189 87 eLsalEnLkfyaallqseqktveealekvgLsgle.dlpvaqLsAGqkrRlalarLllska...plWiLDEPttalDkegvellaellaaHlargGiv 180
++s+ E f++++ q +q e++ +vgL ++ +++Ls G +R+ l+ ll+k+ ++++LDEPtt l ++ v++l +l++ ++ g +v
MMSYN1_0824 793 NMSVSEAYVFFENIPQIKQ--KLETILEVGLGYIKlGQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTV 888
57999***********877..455666799998873577999*************9997642228************************999998888 PP
TIGR01189 181 llath 185
l h
MMSYN1_0824 889 LCIEH 893
87666 PP
>> TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 0.0 0.31 20 21 364 .. 16 42 .. 4 52 .. 0.59
2 ! 18.6 0.0 2.2e-06 0.00014 158 248 .. 489 588 .. 478 601 .. 0.77
3 ! 8.5 0.4 0.0025 0.16 20 370 .. 626 659 .. 581 694 .. 0.65
4 ! 27.4 0.0 4.6e-09 2.9e-07 139 231 .. 809 907 .. 770 915 .. 0.70
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.31
TIGR03719 21 lkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfeeisaklaeedadfd 118
lk+
MMSYN1_0824 16 LKN----------------------------------------------------------------------------------------------- 18
455............................................................................................... PP
TIGR03719 119 klleeqaklqekidaadawdldskleiamdalrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavth 216
MMSYN1_0824 - -------------------------------------------------------------------------------------------------- -
.................................................................................................. PP
TIGR03719 217 dryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspkarqakskarlaryeelaseesekkeetaeivipp 314
MMSYN1_0824 - -------------------------------------------------------------------------------------------------- -
.................................................................................................. PP
TIGR03719 315 gerlGdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstl 364
++++lpk+ ++ G G+Gks l
MMSYN1_0824 19 --------------------------IDLELPKNKLIVFTGLSGSGKSSL 42
..........................555555555555555555555544 PP
== domain 2 score: 18.6 bits; conditional E-value: 2.2e-06
TIGR03719 158 kveklsGGekrrvalcrlllekPd..lllldePtnhl...daesvaWlekflkeykGtvvavthdryfldnvaeWilel.....drGegipykgnyss 245
+ ++lsGGe +r+ l++ + ++ l +ldeP l d + + k+l++ t+++v hd + ++Wi+++ + G i + g y +
MMSYN1_0824 489 TATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLhqkDNDKLIKTLKHLRDLGNTLIVVEHDEDTMK-SSDWIVDIgpragEYGGEITFSGTYQD 585
5689************99988754225579***977632355666666688999999********99885.689**9994444345777888888887 PP
TIGR03719 246 wle 248
l+
MMSYN1_0824 586 ILK 588
775 PP
== domain 3 score: 8.5 bits; conditional E-value: 0.0025
TIGR03719 20 ilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfeeisaklaeedadf 117
MMSYN1_0824 626 N------------------------------------------------------------------------------------------------- 626
3................................................................................................. PP
TIGR03719 118 dklleeqaklqekidaadawdldskleiamdalrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavt 215
MMSYN1_0824 - -------------------------------------------------------------------------------------------------- -
.................................................................................................. PP
TIGR03719 216 hdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspkarqakskarlaryeelaseesekkeetaeivip 313
MMSYN1_0824 - -------------------------------------------------------------------------------------------------- -
.................................................................................................. PP
TIGR03719 314 pgerlGdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitg 370
++++++++p + + + G G+Gkstl++ i+
MMSYN1_0824 627 ------------------------LKNINVTIPLNKFITITGVSGSGKSTLLEDIVY 659
........................456666666666666666666666666654443 PP
== domain 4 score: 27.4 bits; conditional E-value: 4.6e-09
TIGR03719 139 ldskleiamda.lrlpeedakveklsGGekrrvalcrlllekP...dlllldePtnhldaesvaWlekflk...eykGtvvavthdryfldnvaeWil 229
+++kle+ ++ l + ++ ++lsGGe +r+ l+ ll+k ++lldePt l + v+ l l+ + tv+++ h+ f+ +v++ i+
MMSYN1_0824 809 IKQKLETILEVgLGYIKLGQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNklvDLGNTVLCIEHNLDFI-KVSDHII 905
555555555432555666677888888888888888888887422268888888888888888887655541115567888888888877.3566665 PP
TIGR03719 230 el 231
+l
MMSYN1_0824 906 DL 907
55 PP
>> TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.0 0.0 0.01 0.65 494 522 .. 15 43 .. 9 51 .. 0.89
2 ! 18.0 0.0 2.5e-06 0.00016 607 684 .. 484 566 .. 422 597 .. 0.75
3 ? 6.0 0.0 0.01 0.66 495 522 .. 627 654 .. 621 678 .. 0.82
4 ! 23.3 0.0 6e-08 3.8e-06 608 706 .. 825 935 .. 810 938 .. 0.81
Alignments for each domain:
== domain 1 score: 6.0 bits; conditional E-value: 0.01
TIGR03796 494 liedfslslkpGqrvAlvGgsGsGkstia 522
+++++l+l + + + + G sGsGks +a
MMSYN1_0824 15 NLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
5799**********************987 PP
== domain 2 score: 18.0 bits; conditional E-value: 2.5e-06
TIGR03796 607 aelaegganlsGGqrqRleiARaLvknPs.iL.ilDEatsaLDaetEkaid...enlrrRgctciivaHRLstiRdcdeiivl 684
+l+ ++ lsGG+ qR+ +A+ + ++ + iL +lDE L + + ++ ++lr g t i+v H t++ +d i+ +
MMSYN1_0824 484 LNLSRTATTLSGGESQRIRLAKQIGSQLTgILyVLDEPSIGLHQKDNDKLIktlKHLRDLGNTLIVVEHDEDTMKSSDWIVDI 566
47889999***************98875434449********988766655122567889******************99865 PP
== domain 3 score: 6.0 bits; conditional E-value: 0.01
TIGR03796 495 iedfslslkpGqrvAlvGgsGsGkstia 522
++++++++ + + + G sGsGkst+
MMSYN1_0824 627 LKNINVTIPLNKFITITGVSGSGKSTLL 654
6899999*******************85 PP
== domain 4 score: 23.3 bits; conditional E-value: 6e-08
TIGR03796 608 elaegganlsGGqrqRleiARaLvkn...PsiLilDEatsaLDaetEka...idenlrrRgctciivaHRLstiRdcdeiivle......rGkvverG 693
+l ++++ lsGG+ qR+ + L k+ ++ +lDE t+ L k+ + ++l g t++ + H L i+ +d+ii l G+vv +G
MMSYN1_0824 825 KLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRligVLNKLVDLGNTVLCIEHNLDFIKVSDHIIDLGpdggeyGGQVVVTG 922
68899999***************987333579**********776666512256788889**********************95333333489***** PP
TIGR03796 694 tHeellakegaYa 706
t e+++++ Y+
MMSYN1_0824 923 TPEQIINHPTSYT 935
******9999996 PP
>> TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.6 0.0 3.3e-08 2.1e-06 94 181 .. 472 561 .. 460 570 .. 0.83
2 ? -0.9 0.0 4.1 2.6e+02 7 26 .. 638 657 .. 634 665 .. 0.87
3 ! 29.3 0.0 2.3e-09 1.5e-07 112 201 .. 831 929 .. 815 940 .. 0.83
Alignments for each domain:
== domain 1 score: 25.6 bits; conditional E-value: 3.3e-08
TIGR03771 94 vadalervkltela.drpvGelsGGqrqrvlvaralavkps..lllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcd 181
++ l++v l l+ +r+ lsGG+ qr+ +a+ + + + l +ldep Gl +++l++ +++l + g++++++ hd ++++++d
MMSYN1_0824 472 RTNFLNEVGLGYLNlSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDE-DTMKSSD 561
56678888998886479*****************9987654227789**********************************94.5566665 PP
== domain 2 score: -0.9 bits; conditional E-value: 4.1
TIGR03771 7 ellgllGpnGaGkttllrai 26
+++++ G G+Gk+tll i
MMSYN1_0824 638 KFITITGVSGSGKSTLLEDI 657
689999**********9877 PP
== domain 3 score: 29.3 bits; conditional E-value: 2.3e-09
TIGR03771 112 GelsGGqrqrvlvaralavk...pslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvll.......ngrvvadgapdql 199
lsGG+ qr+ ++ l k +++lldep tGl + ++l++++++l + g+++l h+l + ++++d ++ l g+vv +g+p+q+
MMSYN1_0824 831 TTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNL-DFIKVSDHIIDLgpdggeyGGQVVVTGTPEQI 927
579********999988655222689**************************************9.57899999997633333325899999999998 PP
TIGR03771 200 qd 201
+
MMSYN1_0824 928 IN 929
76 PP
>> TIGR00955 3a01204: pigment precursor permease
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.0 2.1 1.3e+02 37 67 .. 12 42 .. 3 50 .. 0.83
2 ! 20.1 0.1 7.2e-07 4.5e-05 157 224 .. 483 552 .. 428 556 .. 0.74
3 ! 8.0 0.0 0.0035 0.22 42 74 .. 628 660 .. 608 690 .. 0.82
4 ! 26.5 0.0 8.4e-09 5.3e-07 161 253 .. 827 926 .. 814 937 .. 0.77
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 2.1
TIGR00955 37 ekellknvsGvaksGellAvlGsSGaGKtTL 67
+ + lkn+ ++ + +l+ G SG+GK+ L
MMSYN1_0824 12 REHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
66778888888889999************98 PP
== domain 2 score: 20.1 bits; conditional E-value: 7.2e-07
TIGR00955 157 rigvpgrvkglSgGerkRlalaselltd..PilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiH 224
+ +lSgGe +R+ la+++ ++ il ++DEP GL +++k+Lk+l + g+t i++ H
MMSYN1_0824 483 YLNLSRTATTLSGGESQRIRLAKQIGSQltGILYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEH 552
4455556679**************976532678899******************************9877 PP
== domain 3 score: 8.0 bits; conditional E-value: 0.0035
TIGR00955 42 knvsGvaksGellAvlGsSGaGKtTLlnalafr 74
kn+ ++ +++ + G SG+GK+TLl+ + +
MMSYN1_0824 628 KNINVTIPLNKFITITGVSGSGKSTLLEDIVYK 660
55555566667899*************977654 PP
== domain 4 score: 26.5 bits; conditional E-value: 8.4e-09
TIGR00955 161 pgrvkglSgGerkRlalaselltd...PilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiilla......eGrvvylG 249
+++ +lSgGe +R+ l++ ll++ +++++DEPT+GL + ++ vL+kl + g+tv++ H + ++ d+ii l G+vv +G
MMSYN1_0824 827 GQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHN--LDFIKVSDHIIDLGpdggeyGGQVVVTG 922
456689****************76222578999*******************************9995..5666666666655322222245666666 PP
TIGR00955 250 spee 253
+pe+
MMSYN1_0824 923 TPEQ 926
6665 PP
>> TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.7 0.0 0.96 60 9 35 .. 16 42 .. 12 46 .. 0.91
2 ! 24.0 0.1 7.5e-08 4.7e-06 107 183 .. 474 553 .. 437 569 .. 0.80
3 ? 1.8 0.1 0.45 29 9 36 .. 627 654 .. 622 658 .. 0.91
4 ! 27.4 0.0 6.9e-09 4.4e-07 103 187 .. 811 898 .. 776 933 .. 0.81
Alignments for each domain:
== domain 1 score: 0.7 bits; conditional E-value: 0.96
TIGR01188 9 vdgvnlkveegevfglLGPnGAGKttt 35
+++++l++++++++ + G G GK+ +
MMSYN1_0824 16 LKNIDLELPKNKLIVFTGLSGSGKSSL 42
789*********************975 PP
== domain 2 score: 24.0 bits; conditional E-value: 7.5e-08
TIGR01188 107 ellelvelkeaa.dkkvktysgGmrrrlelaasliaqPe..vlfLDEPtiGLDprtrraiwdlieelkkegvtilltthy 183
+ l+ v l + + +++ t+sgG +r+ la + +q ++ LDEP iGL + +++ + +++l++ g t+++ h+
MMSYN1_0824 474 NFLNEVGLGYLNlSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHD 553
467888888765378899**************9988753325569*******************************9998 PP
== domain 3 score: 1.8 bits; conditional E-value: 0.45
TIGR01188 9 vdgvnlkveegevfglLGPnGAGKttti 36
++++n+ ++ ++ + + G G GK+t++
MMSYN1_0824 627 LKNINVTIPLNKFITITGVSGSGKSTLL 654
789***********************97 PP
== domain 4 score: 27.4 bits; conditional E-value: 6.9e-09
TIGR01188 103 eraeellelvelke.aadkkvktysgGmrrrlelaasliaqP...evlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleea 187
++ e +le v l + + +++ t+sgG +r++l++ l+++ ++ LDEPt+GL + + + ++++l++ g t+l h+l+ +
MMSYN1_0824 811 QKLETILE-VGLGYiKLGQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLDFI 898
55555555.4555514467889*****************87422246668**********************************99754 PP
>> TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.3 0.0 0.083 5.3 468 495 .. 15 42 .. 9 44 .. 0.91
2 ! 14.2 0.0 4.3e-05 0.0027 582 679 .. 486 594 .. 480 601 .. 0.75
3 ! 15.6 0.1 1.6e-05 0.00099 467 496 .. 625 654 .. 621 658 .. 0.91
4 ! 17.4 0.0 4.7e-06 0.0003 583 674 .. 827 930 .. 799 936 .. 0.83
Alignments for each domain:
== domain 1 score: 3.3 bits; conditional E-value: 0.083
TIGR03797 468 vLddvslkiepGefvaivGaSGsGKStl 495
L+++ l+ + + + + G SGsGKS+l
MMSYN1_0824 15 NLKNIDLELPKNKLIVFTGLSGSGKSSL 42
589999999999**************98 PP
== domain 2 score: 14.2 bits; conditional E-value: 4.3e-05
TIGR03797 582 isegggtlSGGQrQRlliAralvrkPr.il.lfDEATSALDNrtQaiVsesle...klkvtRiviAHRLSTirnadrilvle......eGrvveqGsy 668
+s ++tlSGG QR+ +A+ + ++ il ++DE L + +++l+ l t iv+ H T++ +d i+ + G++ +G+y
MMSYN1_0824 486 LSRTATTLSGGESQRIRLAKQIGSQLTgILyVLDEPSIGLHQKDNDKLIKTLKhlrDLGNTLIVVEHDEDTMKSSDWIVDIGprageyGGEITFSGTY 583
67889*****************98865255359*****9976666666666551115679******************98742222224789999999 PP
TIGR03797 669 eeLlakeGlfa 679
+++l+++ +
MMSYN1_0824 584 QDILKSDTITG 594
99888776655 PP
== domain 3 score: 15.6 bits; conditional E-value: 1.6e-05
TIGR03797 467 lvLddvslkiepGefvaivGaSGsGKStll 496
L++++++i +f++i G SGsGKStll
MMSYN1_0824 625 NNLKNINVTIPLNKFITITGVSGSGKSTLL 654
5699*************************9 PP
== domain 4 score: 17.4 bits; conditional E-value: 4.7e-06
TIGR03797 583 segggtlSGGQrQRlliAralvrkP...rillfDEATSAL...DNrtQaiVsesleklkvtRiviAHRLSTirnadrilvle......eGrvveqGsy 668
++++tlSGG QR+ + l +k ++l+DE T L D + V + l l t + i H L i+ +d+i+ l G+vv +G+
MMSYN1_0824 827 GQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLhvdDVKRLIGVLNKLVDLGNTVLCIEHNLDFIKVSDHIIDLGpdggeyGGQVVVTGTP 924
6789******************9963336999******9966334444569999*************************9953233235899999999 PP
TIGR03797 669 eeLlak 674
e+++++
MMSYN1_0824 925 EQIINH 930
999876 PP
>> TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.7 0.0 0.00049 0.031 15 54 .. 4 43 .. 1 48 [. 0.91
2 ! 21.3 0.1 5.7e-07 3.6e-05 131 211 .. 473 554 .. 438 563 .. 0.87
3 ! 9.4 0.0 0.0025 0.16 24 54 .. 624 654 .. 615 663 .. 0.88
4 ! 10.2 0.0 0.0014 0.089 128 215 .. 810 899 .. 783 923 .. 0.82
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 0.00049
TIGR02769 15 ggllgkkqrkavldnvslsleeGetvallGrsGaGkstla 54
+ ++ k +r++ l+n++l+l + + + + G sG+Gks la
MMSYN1_0824 4 DKIIIKGAREHNLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
567778899999**************************98 PP
== domain 2 score: 21.3 bits; conditional E-value: 5.7e-07
TIGR02769 131 aellelvelrsevldklPrqlsGGqlqriniarala..vePklivldeavsnldlvlqasilellkklkqefGlaylfithdl 211
+++l++v+l +l + + lsGG qri +a+ + + l vlde l ++++ lk+l++ G + +++ hd
MMSYN1_0824 473 TNFLNEVGLGYLNLSRTATTLSGGESQRIRLAKQIGsqLTGILYVLDEPSIGLHQKDNDKLIKTLKHLRD-LGNTLIVVEHDE 554
46799******************************722456799************************96.788899999995 PP
== domain 3 score: 9.4 bits; conditional E-value: 0.0025
TIGR02769 24 kavldnvslsleeGetvallGrsGaGkstla 54
++ l+n+++++ + +++ G sG+Gkstl
MMSYN1_0824 624 ENNLKNINVTIPLNKFITITGVSGSGKSTLL 654
56799************************96 PP
== domain 4 score: 10.2 bits; conditional E-value: 0.0014
TIGR02769 128 ariaellelvelrsevldklPrqlsGGqlqriniaralave...PklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvq 215
++ e + +v+l +l + + lsGG qri ++ l + + +lde + l + ++ l+kl + G ++l i h+l ++
MMSYN1_0824 810 KQKLETILEVGLGYIKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLV-DLGNTVLCIEHNLDFIK 899
44455556799999999999***************9997662225799***********99999*******96.579999******98774 PP
>> TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.1 0.0 0.0044 0.28 9 47 .. 5 42 .. 1 48 [. 0.86
2 ! 13.2 0.0 0.00012 0.0079 122 206 .. 473 559 .. 433 588 .. 0.83
3 ! 10.3 0.1 0.00095 0.06 19 49 .. 625 655 .. 615 660 .. 0.89
4 ! 17.4 0.0 6.3e-06 0.0004 116 238 .. 808 937 .. 801 944 .. 0.76
Alignments for each domain:
== domain 1 score: 8.1 bits; conditional E-value: 0.0044
TIGR02314 9 kvfdqgdkkikaldnvslfvpkgqifgvigasgagkstl 47
k++ +g ++ + l+n++l +pk +++ g sg+gks+l
MMSYN1_0824 5 KIIIKGARE-HNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
666666665.88*************************98 PP
== domain 2 score: 13.2 bits; conditional E-value: 0.00012
TIGR02314 122 tellalvglsdkkdsy.psnlsggqkqrvaiaralasepkvll..cdeatsaldpattqsilellkeinrrlgltillithemdvvkr 206
t++l vgl+ + s + lsgg+ qr+ +a+ + s+ +l de + l +++ lk++ r lg t++++ h+ d +k+
MMSYN1_0824 473 TNFLNEVGLGYLNLSRtATTLSGGESQRIRLAKQIGSQLTGILyvLDEPSIGLHQKDNDKLIKTLKHL-RDLGNTLIVVEHDEDTMKS 559
56788899998776651568*****************976544227********************98.99*************9997 PP
== domain 3 score: 10.3 bits; conditional E-value: 0.00095
TIGR02314 19 kaldnvslfvpkgqifgvigasgagkstlir 49
+ l+n+++ +p + + + g sg+gkstl+
MMSYN1_0824 625 NNLKNINVTIPLNKFITITGVSGSGKSTLLE 655
579*************************985 PP
== domain 4 score: 17.4 bits; conditional E-value: 6.3e-06
TIGR02314 116 kikrkvtellalvglsd.kkdsypsnlsggqkqrvaiaralase...pkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricd 209
+ik+k++ +l vgl+ k + lsgg+ qr+ ++ l + ++l de t+ l + ++ +l ++ lg t+l i h++d +k +
MMSYN1_0824 808 QIKQKLETILE-VGLGYiKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLV-DLGNTVLCIEHNLDFIKVSDH 903
57888877775.78887245667789***********998865412257899***********9999999998875.79**************97655 PP
TIGR02314 210 evavid.....kgeliekgtvseifshpktelak 238
+ + +g+++ gt +i+ hp + ak
MMSYN1_0824 904 IIDLGPdggeyGGQVVVTGTPEQIINHPTSYTAK 937
5555322222246788889999999999776654 PP
>> TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.0 0.0 9.9e-10 6.2e-08 56 172 .. 439 564 .. 429 577 .. 0.76
2 ? 0.9 0.0 0.71 45 2 14 .. 643 655 .. 642 664 .. 0.86
3 ! 17.8 0.0 5e-06 0.00032 96 203 .. 828 941 .. 804 945 .. 0.81
Alignments for each domain:
== domain 1 score: 30.0 bits; conditional E-value: 9.9e-10
TIGR01187 56 hmtveenvafgLkmrkvp.kaeikervke.......aLelvqleefa.krkpsqlsGGqrqrvalaravvkkPk..iLLlDeplsaLDkkLrdqmqle 142
m++ e + f L ++ +p +a+i++ v + L+ v l + +r + lsGG qr+ la+ + + + +lDep L +k d++ +
MMSYN1_0824 439 NMSISEQLDFLLNIDLTPtQATIAKLVLDeiisrtnFLNEVGLGYLNlSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKT 536
57777777777777777624566666654211111145555555544468899****************98754225579****************** PP
TIGR01187 143 lkalqeklGitvvlvthDqeealtmsdria 172
lk+l + lG t+++v hD e+ + sd i+
MMSYN1_0824 537 LKHL-RDLGNTLIVVEHD-EDTMKSSDWIV 564
**98.68**********9.56788888776 PP
== domain 2 score: 0.9 bits; conditional E-value: 0.71
TIGR01187 2 LGpsGsGkttlLr 14
G sGsGk+tlL
MMSYN1_0824 643 TGVSGSGKSTLLE 655
699********96 PP
== domain 3 score: 17.8 bits; conditional E-value: 5e-06
TIGR01187 96 rkpsqlsGGqrqrvalaravvkkP...kiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavl......rkGkiaqige 184
++ + lsGG qr+ l+ + kk ++LlDep + L +++ l++l lG tv+ + h+ + + +sd i l G+++ g+
MMSYN1_0824 828 QNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNKLV-DLGNTVLCIEHNL-DFIKVSDHIIDLgpdggeYGGQVVVTGT 923
45688***************998533379************99999999999986.6**********86.689******9884433333689****** PP
TIGR01187 185 peeiyeePanefvarfiGe 203
pe+i ++P++ ++a+++ +
MMSYN1_0824 924 PEQIINHPTS-YTAKYLKD 941
********75.88888765 PP
>> TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.3 0.0 0.043 2.7 12 43 .. 12 43 .. 1 54 [. 0.84
2 ! 13.8 0.0 0.00011 0.007 125 191 .. 486 553 .. 435 568 .. 0.78
3 ! 9.3 0.1 0.0027 0.17 14 47 .. 625 658 .. 615 689 .. 0.86
4 ! 22.2 0.1 2.9e-07 1.9e-05 128 201 .. 829 903 .. 808 927 .. 0.86
Alignments for each domain:
== domain 1 score: 5.3 bits; conditional E-value: 0.043
TIGR03410 12 esevlrdvslevekgevvavlGrngvGkttll 43
+ + l++++le++k+++++ G g Gk++l
MMSYN1_0824 12 REHNLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
67889************************995 PP
== domain 2 score: 13.8 bits; conditional E-value: 0.00011
TIGR03410 125 lkRrgGdLsGGqqqqlaiaRaLvtePk..lllLDePteGiqPsiikeiekvikelakekdlaillveqv 191
l+R + LsGG q + +a+ + ++ l +LDeP+ G+ +++ k++k+l++ + ++++ve+
MMSYN1_0824 486 LSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHLRDLG-NTLIVVEHD 553
6899****************998875422779********9998888889999998864.567777765 PP
== domain 3 score: 9.3 bits; conditional E-value: 0.0027
TIGR03410 14 evlrdvslevekgevvavlGrngvGkttllkalv 47
+ l++++++++ ++ +++ G g Gk+tll +v
MMSYN1_0824 625 NNLKNINVTIPLNKFITITGVSGSGKSTLLEDIV 658
5699**************************9886 PP
== domain 4 score: 22.2 bits; conditional E-value: 2.9e-07
TIGR03410 128 rgGdLsGGqqqqlaiaRaLvte...PklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladr 201
++ LsGG q + ++ L+++ ++lLDePt G+ +k + v+++l + + ++l +e++ldf + ++d+
MMSYN1_0824 829 NATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDL-GNTVLCIEHNLDFIK-VSDH 903
6779***************976222579***********99999999999999985.679**********75.4555 PP
>> TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.3 0.0 0.00044 0.028 30 66 .. 6 42 .. 1 47 [. 0.82
2 ! 10.9 0.0 0.0006 0.038 159 226 .. 487 555 .. 472 590 .. 0.77
3 ? 6.8 0.1 0.011 0.68 40 69 .. 627 656 .. 610 683 .. 0.84
4 ! 19.4 0.0 1.6e-06 0.0001 160 265 .. 828 943 .. 807 945 .. 0.78
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 0.00044
TIGR03415 30 ildktGlvlgvadasldveeGeilvlmGlsGsGkssl 66
i+ k + + +++ l++ + ++v+ GlsGsGkssl
MMSYN1_0824 6 IIIKGAREHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
555555566789999*********************9 PP
== domain 2 score: 10.9 bits; conditional E-value: 0.0006
TIGR03415 159 dkkvgelsGGmqqrvGlarafate.adil.lmdePfsaldPliraklqdellelqkklkktivfvshdld 226
+ + lsGG qr+ la+ + + + il ++deP l kl l +l + l t++ v hd d
MMSYN1_0824 487 SRTATTLSGGESQRIRLAKQIGSQlTGILyVLDEPSIGLHQKDNDKLIKTLKHL-RDLGNTLIVVEHDED 555
467889**************988735565358****999877777777666555.56889********76 PP
== domain 3 score: 6.8 bits; conditional E-value: 0.011
TIGR03415 40 vadasldveeGeilvlmGlsGsGkssllra 69
+++++++ + + G+sGsGks+ll
MMSYN1_0824 627 LKNINVTIPLNKFITITGVSGSGKSTLLED 656
4677777888888999***********975 PP
== domain 4 score: 19.4 bits; conditional E-value: 1.6e-06
TIGR03415 160 kkvgelsGGmqqrvGlaraf...ateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaim......egGrivqlgt 248
+++ lsGG qr+ l+ + t+ ++l+deP + l ++l l +l l t++ + h+ld +k+ ++i + gG++v +gt
MMSYN1_0824 828 QNATTLSGGESQRIKLSTYLlkkQTGNTMFLLDEPTTGLHVDDVKRLIGVLNKL-VDLGNTVLCIEHNLD-FIKVSDHIIDLgpdggeYGGQVVVTGT 923
56788***********998734357889***********988888998877777.5799**********9.58****997663333324799****** PP
TIGR03415 249 peeivlkPan...eyvadfv 265
pe+i+ +P++ +y++d++
MMSYN1_0824 924 PEQIINHPTSytaKYLKDYI 943
********752225666665 PP
>> TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.1 0.1 1.5e-07 9.2e-06 84 234 .. 431 598 .. 416 601 .. 0.70
2 ? -0.5 0.1 2.3 1.5e+02 17 48 .. 627 658 .. 621 665 .. 0.87
3 ! 30.6 0.0 7e-10 4.4e-08 111 228 .. 808 933 .. 776 943 .. 0.73
Alignments for each domain:
== domain 1 score: 23.1 bits; conditional E-value: 1.5e-07
TIGR04406 84 easif..rkltveenlkavlelredldkeeree.......kleelleeleiahlr.ekkaaslsGGerrrveiaralaaePkfil..ldePfagvdPi 169
e sif +++++e l +l++ +++++++ ++l+e+ + l+ +++a++lsGGe +r+ +a+ + ++ + il ldeP g+
MMSYN1_0824 431 EKSIFdyTNMSISEQLDFLLNIDLTPTQATIAKlvldeiiSRTNFLNEVGLGYLNlSRTATTLSGGESQRIRLAKQIGSQLTGILyvLDEPSIGLHQK 528
66666334677777777777765543333333211111113457889999988873567899***************99887665449*******999 PP
TIGR04406 170 avsdikklikllkergiGvlitdhnvretldivdrayiv......seGkvlaeGsaeeivanekvrevylG 234
++ k +k+l++ g +++ +h+ +t++ d + + G++ +G+ ++i++++++ yl
MMSYN1_0824 529 DNDKLIKTLKHLRDLGNTLIVVEHD-EDTMKSSDWIVDIgprageYGGEITFSGTYQDILKSDTITGRYLS 598
9999999999999999999999997.455554443332222222257999999999999999999999986 PP
== domain 2 score: -0.5 bits; conditional E-value: 2.3
TIGR04406 17 vkdvslevksgeivGllGPnGaGkttsfymiv 48
+k++++++ ++ + + G G+Gk+t + iv
MMSYN1_0824 627 LKNINVTIPLNKFITITGVSGSGKSTLLEDIV 658
789999********************887665 PP
== domain 3 score: 30.6 bits; conditional E-value: 7e-10
TIGR04406 111 ereekleelleeleiahlr.ekkaaslsGGerrrveiaralaae...PkfilldePfagvdPiavsdikkli...kllkergiGvlitdhnvretldi 201
++++kle++le + + ++ ++a++lsGGe +r+ ++ l + ++ lldeP +g+ v d+k+li ++l + g vl +hn + +++
MMSYN1_0824 808 QIKQKLETILE-VGLGYIKlGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLH---VDDVKRLIgvlNKLVDLGNTVLCIEHNL-DFIKV 900
56667777664.5555554257899**************998762224799*******975...66666666111556677888*******7.78999 PP
TIGR04406 202 vdrayiv......seGkvlaeGsaeeivanekv 228
d+ + + G+v+++G++e+i+++++
MMSYN1_0824 901 SDHIIDLgpdggeYGGQVVVTGTPEQIINHPTS 933
9987655333333579************99765 PP
>> TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.4 0.0 0.17 11 11 42 .. 11 42 .. 1 48 [. 0.81
2 ! 15.3 0.0 2.1e-05 0.0013 152 231 .. 475 556 .. 460 588 .. 0.76
3 ! 8.2 0.1 0.0029 0.18 14 51 .. 625 664 .. 617 695 .. 0.83
4 ! 19.4 0.0 1.2e-06 7.5e-05 423 518 .. 828 930 .. 741 939 .. 0.76
Alignments for each domain:
== domain 1 score: 2.4 bits; conditional E-value: 0.17
TIGR03269 11 dglevlknisleleeGevlGilGksGaGksvl 42
+ lkni+lel + +++ G sG+Gks l
MMSYN1_0824 11 AREHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
55567999999999999999999999999976 PP
== domain 2 score: 15.3 bits; conditional E-value: 2.1e-05
TIGR03269 152 lleevkleh.rithiardlsGGekqrvvlarqlake..plllladeptGtldpktaklvhealkeavkeedislvltshwpev 231
+l+ev l++ + a lsGGe qr+ la+q+ + +l++ dep+ l k + + ++lk+ ++ + +l++ h +
MMSYN1_0824 475 FLNEVGLGYlNLSRTATTLSGGESQRIRLAKQIGSQltGILYVLDEPSIGLHQKDNDKLIKTLKH-LRDLGNTLIVVEHDEDT 556
55666665534667888899999999999999977533688889999888888877766677654.56677777777775554 PP
== domain 3 score: 8.2 bits; conditional E-value: 0.0029
TIGR03269 14 evlknisleleeGevlGilGksGaGksvllh..llrGlde 51
+ lkni++++ + + i G sG+Gks ll+ + +G+++
MMSYN1_0824 625 NNLKNINVTIPLNKFITITGVSGSGKSTLLEdiVYKGIHN 664
569*************************997446677765 PP
== domain 4 score: 19.4 bits; conditional E-value: 1.2e-06
TIGR03269 423 klpdelseGerhrvalaqvlikep...rivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdra.alm.....rdGkivkiGd 511
+ + +ls Ge r+ l+ l+k+ + +ldept + + vk +l+ +l++t + + h++df++ v d + l G++v +G
MMSYN1_0824 828 QNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLH-VDDVKRLIGVLNKLVDLGNTVLCIEHNLDFIK-VSDHIiDLGpdggeYGGQVVVTGT 923
4567788888888888888887642225788888887664.45555556778888888888888888888875.444331332111114578888888 PP
TIGR03269 512 peeivee 518
pe+i+++
MMSYN1_0824 924 PEQIINH 930
8888776 PP
>> TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.1 0.0 0.095 6 15 54 .. 14 51 .. 2 55 .. 0.83
2 ! 22.4 0.1 1.4e-07 8.7e-06 113 206 .. 465 559 .. 424 592 .. 0.81
3 ? 4.5 0.1 0.035 2.2 15 45 .. 625 655 .. 615 681 .. 0.85
4 ! 17.0 0.1 6.1e-06 0.00038 402 496 .. 831 928 .. 804 931 .. 0.71
Alignments for each domain:
== domain 1 score: 3.1 bits; conditional E-value: 0.095
TIGR02633 15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphG 54
+ l+nidl+l +++ + G G+Gks+l +s++y G
MMSYN1_0824 14 HNLKNIDLELPKNKLIVFTGLSGSGKSSLA--FSTIYQEG 51
5799***********************995..56676655 PP
== domain 2 score: 22.4 bits; conditional E-value: 1.4e-07
TIGR02633 113 dydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvr..llildepsaslteketeilldiirdlkakgvacvyishkleevka 206
d+++ r+ ++l+e+ l n +r + l +G+ q + +ak + q l +ldeps l +k+ + l++ ++ l+ g + + + h + +k+
MMSYN1_0824 465 VLDEIISRT-NFLNEVGLGYLNLSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDEDTMKS 559
345666665.789********************************998544889********************************9998877764 PP
== domain 3 score: 4.5 bits; conditional E-value: 0.035
TIGR02633 15 kaldnidlklraGeivslcGenGaGkstlmk 45
+ l+ni++++ + +++ G G+Gkstl+
MMSYN1_0824 625 NNLKNINVTIPLNKFITITGVSGSGKSTLLE 655
5699*************************86 PP
== domain 4 score: 17.0 bits; conditional E-value: 6.1e-06
TIGR02633 402 arlsGGnqqkavlaklllln...prvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvig..eGklkadlvndeltqeq 494
++lsGG+ q+ l+ ll + +++ldept G+ v + ++n+l+ G +++ + +l + + +sd ++ +g G+ +++v + t eq
MMSYN1_0824 831 TTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNL-DFIKVSDHIIDLGpdGGEYGGQVVVT-GTPEQ 926
67888888888888887754122467888888888888888888888888888888888888887.46678888877653134444444433.35555 PP
TIGR02633 495 vl 496
++
MMSYN1_0824 927 II 928
54 PP
>> TIGR01978 sufC: FeS assembly ATPase SufC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.4 0.0 0.0047 0.3 9 44 .. 9 44 .. 2 57 .. 0.83
2 ! 8.2 0.1 0.0056 0.36 144 207 .. 492 557 .. 469 561 .. 0.86
3 ! 11.9 0.3 0.00042 0.026 13 48 .. 624 659 .. 615 694 .. 0.86
4 ! 20.3 0.1 1.1e-06 6.9e-05 143 208 .. 831 899 .. 783 911 .. 0.80
Alignments for each domain:
== domain 1 score: 8.4 bits; conditional E-value: 0.0047
TIGR01978 9 svedkeiLkglnlevkkGevhaimGpnGsGkstLsk 44
+ + ++ Lk+++le+ k ++ + G GsGks L+
MMSYN1_0824 9 KGAREHNLKNIDLELPKNKLIVFTGLSGSGKSSLAF 44
55567789*************************974 PP
== domain 2 score: 8.2 bits; conditional E-value: 0.0056
TIGR01978 144 GfsGGekkrneilql..allePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerll 207
sGGe +r + + + l+ l +LDe Gl +++++++lr+ ++l+++ h e +
MMSYN1_0824 492 TLSGGESQRIRLAKQigSQLTGILYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDEDTM 557
689******99986524579999***********9888888889*****************98765 PP
== domain 3 score: 11.9 bits; conditional E-value: 0.00042
TIGR01978 13 keiLkglnlevkkGevhaimGpnGsGkstLskvlag 48
++ Lk++n+++ + i G GsGkstL + ++
MMSYN1_0824 624 ENNLKNINVTIPLNKFITITGVSGSGKSTLLEDIVY 659
5679**************************998765 PP
== domain 4 score: 20.3 bits; conditional E-value: 1.1e-06
TIGR01978 143 eGfsGGekkrneilqlalle...PklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerlle 208
+ sGGe +r + +l + ++ +LDe Gl vD +k ++ ++nkl + +++l i h+ +++
MMSYN1_0824 831 TTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLDFIK 899
468******99987655544222689*************************************987665 PP
>> TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.3 0.0 2.5 1.6e+02 11 40 .. 13 42 .. 3 47 .. 0.84
2 ! 17.2 0.0 1.1e-05 0.0007 115 194 .. 478 558 .. 458 567 .. 0.78
3 ? 6.3 0.0 0.023 1.5 17 44 .. 630 657 .. 617 666 .. 0.81
4 ! 16.6 0.0 1.7e-05 0.0011 115 190 .. 818 896 .. 805 909 .. 0.76
Alignments for each domain:
== domain 1 score: -0.3 bits; conditional E-value: 2.5
TIGR01277 11 khlplefdlsveaGervailGesGaGkstl 40
+h + dl++ + + + G sG+Gks+l
MMSYN1_0824 13 EHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
667778899999999999**********98 PP
== domain 2 score: 17.2 bits; conditional E-value: 1.1e-05
TIGR01277 115 qvGiady.lerlpeelsGGqrqrvalarclvre.kp.illldepfsaldpklreemlalvkkladekkltlllvthslsdaaa 194
+vG++ + l r lsGG+ qr+ la+ + + +++ldep l +k ++++ +k+l d tl++v h+ + ++
MMSYN1_0824 478 EVGLGYLnLSRTATTLSGGESQRIRLAKQIGSQlTGiLYVLDEPSIGLHQKDNDKLIKTLKHLRD-LGNTLIVVEHDEDT-MK 558
6777764489******************997652441568**********999988777777654.45699999997554.43 PP
== domain 3 score: 6.3 bits; conditional E-value: 0.023
TIGR01277 17 fdlsveaGervailGesGaGkstllnli 44
++++ + ++i G sG+Gkstll+ i
MMSYN1_0824 630 INVTIPLNKFITITGVSGSGKSTLLEDI 657
566777778899*************865 PP
== domain 4 score: 16.6 bits; conditional E-value: 1.7e-05
TIGR01277 115 qvGiady.lerlpeelsGGqrqrvalarclvrek...pillldepfsaldpklreemlalvkkladekkltlllvthsls 190
+vG++ + l + lsGG+ qr+ l+ l++++ ++lldep + l + ++ +++kl+d t+l + h+l+
MMSYN1_0824 818 EVGLGYIkLGQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNKLVDL-GNTVLCIEHNLD 896
566664325667789****************98633379**********999999999999999876.568889999874 PP
>> TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.1 0.0 0.057 3.6 1 27 [. 16 42 .. 16 47 .. 0.94
2 ! 13.5 0.0 0.00015 0.0096 100 187 .. 477 565 .. 444 578 .. 0.77
3 ! 13.3 0.1 0.00017 0.011 1 30 [. 627 656 .. 627 667 .. 0.90
4 ! 9.5 0.0 0.0025 0.16 109 200 .. 827 919 .. 786 944 .. 0.75
Alignments for each domain:
== domain 1 score: 5.1 bits; conditional E-value: 0.057
TIGR01184 1 lkdvdleikkgefislighsgcgkstl 27
lk++dle+ k ++i + g sg gks+l
MMSYN1_0824 16 LKNIDLELPKNKLIVFTGLSGSGKSSL 42
79***********************98 PP
== domain 2 score: 13.5 bits; conditional E-value: 0.00015
TIGR01184 100 elvglreaa.dkrpeqlsggmkqrvaiaralsir..pklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvm 187
+ vgl + ++ + lsgg qr+ +a+ + + l +ldep l +++l + l k +++ t ++v hd d ++ sd +v
MMSYN1_0824 477 NEVGLGYLNlSRTATTLSGGESQRIRLAKQIGSQltGILYVLDEPSIGLHQKDNDKLIKTL-KHLRDLGNTLIVVEHDED-TMKSSDWIVD 565
5566655431567789*************987551156789*********99999998765.66789999********76.4566777765 PP
== domain 3 score: 13.3 bits; conditional E-value: 0.00017
TIGR01184 1 lkdvdleikkgefislighsgcgkstllnl 30
lk+++++i +fi++ g sg gkstll+
MMSYN1_0824 627 LKNINVTIPLNKFITITGVSGSGKSTLLED 656
79*************************974 PP
== domain 4 score: 9.5 bits; conditional E-value: 0.0025
TIGR01184 109 dkrpeqlsggmkqrvaiaral...sirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakigeil 200
++ + lsgg qr+ ++ l + ++lldep l + l l k+v + tvl + h++d + +sd ++ l + g+++
MMSYN1_0824 827 GQNATTLSGGESQRIKLSTYLlkkQTGNTMFLLDEPTTGLHVDDVKRLIGVLNKLV-DLGNTVLCIEHNLDF-IKVSDHIIDLGPDGGEYGGQVV 919
356789***********9988222345689*********99988888888777766.6789*********95.6789999988666666666665 PP
>> TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.1 0.0 6.6 4.2e+02 16 42 .. 16 42 .. 12 46 .. 0.86
2 ? -0.2 0.1 1.8 1.1e+02 8 80 .. 130 200 .. 123 210 .. 0.72
3 ! 7.7 0.0 0.0067 0.42 129 206 .. 474 553 .. 448 565 .. 0.76
4 ? 4.0 0.0 0.093 5.9 16 44 .. 627 655 .. 620 663 .. 0.85
5 ! 24.2 0.0 6.2e-08 3.9e-06 131 248 .. 816 940 .. 791 944 .. 0.80
Alignments for each domain:
== domain 1 score: -2.1 bits; conditional E-value: 6.6
TIGR03005 16 ldglelevaaGekvaliGpsGsGksti 42
l++++le+ + + + G sGsGks++
MMSYN1_0824 16 LKNIDLELPKNKLIVFTGLSGSGKSSL 42
67788888899999999*******986 PP
== domain 2 score: -0.2 bits; conditional E-value: 1.8
TIGR03005 8 krfgeltvldglelevaaGekvaliGpsGs.GkstilrilmtletideGsikvegeqlyhmkgrkGklvpadek 80
k + ++++++ + + Ge++ ++ p k t + il l ++G+i+v + m + +l + +++
MMSYN1_0824 130 KAVSIKEIVENIKQSTSDGEQIHILSPVIRdKKGTHIDILEKLR--NDGFIRVIVDDQLRMLDDQINL-EKNQR 200
555666788999999***********986515678899987776..6999999888777776555555.44444 PP
== domain 3 score: 7.7 bits; conditional E-value: 0.0067
TIGR03005 129 elldmvGlad.kadalpaqlsGGqkqrvaiaralalr..pkvllfdevtsaldpelveevlnvlrrlasetdltmllvthe 206
++l+ vGl+ + lsGG+ qr+ +a+ + + + ++de++ l + +++++ l++l t+++v h+
MMSYN1_0824 474 NFLNEVGLGYlNLSRTATTLSGGESQRIRLAKQIGSQltGILYVLDEPSIGLHQKDNDKLIKTLKHLRD-LGNTLIVVEHD 553
6789999997256778889*************9976510455567999999988888877777777643.34467777775 PP
== domain 4 score: 4.0 bits; conditional E-value: 0.093
TIGR03005 16 ldglelevaaGekvaliGpsGsGkstilr 44
l+++++++ + +++ G sGsGkst+l
MMSYN1_0824 627 LKNINVTIPLNKFITITGVSGSGKSTLLE 655
667777778888899************95 PP
== domain 5 score: 24.2 bits; conditional E-value: 6.2e-08
TIGR03005 131 ldmvGlad.kadalpaqlsGGqkqrvaiaralalr...pkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlff.... 220
+ vGl+ k + + lsGG+ qr+ ++ l + ++l+de+t+ l + v+ ++ vl +l t+l + h++ f + ++d ++ +
MMSYN1_0824 816 ILEVGLGYiKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDL-GNTVLCIEHNLDFIK-VSDHIIDLgpdg 911
44578874377888999***********999866522246899***********************865.569**********86.899999764444 PP
TIGR03005 221 ..dkGkiveeGkpdeifrkpkeertreflk 248
+ G++v G p++i ++p t ++lk
MMSYN1_0824 912 geYGGQVVVTGTPEQIINHPTSY-TAKYLK 940
446799**************864.555555 PP
>> TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.6 0.0 2 1.2e+02 22 50 .. 14 42 .. 3 46 .. 0.85
2 ! 14.2 0.0 6.3e-05 0.004 120 202 .. 473 556 .. 440 572 .. 0.82
3 ? 5.2 0.1 0.034 2.2 21 54 .. 624 657 .. 612 662 .. 0.88
4 ! 14.7 0.0 4.4e-05 0.0028 136 240 .. 830 939 .. 809 944 .. 0.74
Alignments for each domain:
== domain 1 score: -0.6 bits; conditional E-value: 2
TIGR03258 22 vvlddlsleieaGellallGksGsGkttl 50
l+++ le+ +l+ G sGsGk++l
MMSYN1_0824 14 HNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
569999********************876 PP
== domain 2 score: 14.2 bits; conditional E-value: 6.3e-05
TIGR03258 120 adalklvqlsdaa.arlpaqlsGGqqqrvalaralvvrpd..vllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrde 202
++ l v+l+ +r + lsGG qr+ la+ + + + +ldep l + ++ + lk l r+l + t+++v hd+d
MMSYN1_0824 473 TNFLNEVGLGYLNlSRTATTLSGGESQRIRLAKQIGSQLTgiLYVLDEPSIGLHQKDNDKLIKTLKHL-RDLGN-TLIVVEHDEDT 556
45677788877652678889***************86654115679*****************99998.46766.78889999874 PP
== domain 3 score: 5.2 bits; conditional E-value: 0.034
TIGR03258 21 rvvlddlsleieaGellallGksGsGkttllrav 54
+ l+++ ++i + +++ G sGsGk+tll +
MMSYN1_0824 624 ENNLKNINVTIPLNKFITITGVSGSGKSTLLEDI 657
5569999***********************9765 PP
== domain 4 score: 14.7 bits; conditional E-value: 4.4e-05
TIGR03258 136 paqlsGGqqqrvalaralvvr...pdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladki.llmke.....GslialGet 224
+ lsGG qr+ l+ l + ++lldep + l + + + l++l + l + tvl++ h+ d + ++d+i l + G+++ G++
MMSYN1_0824 830 ATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVD-LGN-TVLCIEHNLD-FIKVSDHIiDLGPDggeygGQVVVTGTP 924
4679***********9998662225799********998766666666666643.444.9******976.566666661455552223379******* PP
TIGR03258 225 ralydapadrfvaeyl 240
+++ ++p+ ++a+yl
MMSYN1_0824 925 EQIINHPT-SYTAKYL 939
******97.5889998 PP
>> TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.1 0.0 4 2.6e+02 28 44 .. 27 43 .. 12 57 .. 0.73
2 ! 9.2 0.0 0.003 0.19 125 197 .. 474 552 .. 463 558 .. 0.75
3 ! 10.1 0.0 0.0016 0.1 27 71 .. 637 681 .. 620 694 .. 0.76
4 ! 14.1 0.0 8.9e-05 0.0057 137 203 .. 826 900 .. 789 935 .. 0.75
Alignments for each domain:
== domain 1 score: -1.1 bits; conditional E-value: 4
TIGR02323 28 evlgivGesGsGkstll 44
+++ G sGsGks+l
MMSYN1_0824 27 KLIVFTGLSGSGKSSLA 43
44566799******984 PP
== domain 2 score: 9.2 bits; conditional E-value: 0.003
TIGR02323 125 kwlekveidaari..kpaafsGGmqqrlqiarnlvtrpr...lvfmeptGGl.vsvqarllllrglvrelglaviivth 197
++l++v + + + +++sGG qr+++a+++ ++ v+ ep+ Gl + +l+ + + +r+lg + i+v h
MMSYN1_0824 474 NFLNEVGLGYLNLsrTATTLSGGESQRIRLAKQIGSQLTgilYVLDEPSIGLhQKDNDKLIKTLKHLRDLGNTLIVVEH 552
5666666655444445789*************99665441115556******55667788888888899*******998 PP
== domain 3 score: 10.1 bits; conditional E-value: 0.0016
TIGR02323 27 GevlgivGesGsGkstllkalaarlladaGevtyesrsrelella 71
+ ++i G sGsGkstll+ + + + ++ + +y ++ +e+
MMSYN1_0824 637 NKFITITGVSGSGKSTLLEDIVYKGIHNNLSKEYLPIGKVKEIKG 681
46789**************99998888888888877777777665 PP
== domain 4 score: 14.1 bits; conditional E-value: 8.9e-05
TIGR02323 137 i..kpaafsGGmqqrlqiarnlvtr...prlvfm.eptGGl.vsvqarll.llrglvrelglaviivth.lavarl 203
+ + +++sGG qr++++ l+ + + ++ ept Gl v rl+ +l +lv lg +v+ + h l +++
MMSYN1_0824 826 LgqNATTLSGGESQRIKLSTYLLKKqtgNTMFLLdEPTTGLhVDDVKRLIgVLNKLVD-LGNTVLCIEHnLDFIKV 900
3546789*************998651114455558******99999999988888875.99999999997776664 PP
>> TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.8 0.0 0.036 2.3 11 42 .. 11 42 .. 1 47 [. 0.85
2 ! 10.6 0.2 0.0012 0.078 107 182 .. 474 552 .. 441 568 .. 0.83
3 ! 10.5 0.5 0.0014 0.086 14 46 .. 625 657 .. 615 689 .. 0.84
4 ! 16.2 0.2 2.3e-05 0.0015 103 194 .. 811 904 .. 777 913 .. 0.79
Alignments for each domain:
== domain 1 score: 5.8 bits; conditional E-value: 0.036
TIGR03740 11 kkqavvnnvslkvkknsvygllGpnGaGkstl 42
+++ ++n++l+++kn++ + G G+Gks+l
MMSYN1_0824 11 AREHNLKNIDLELPKNKLIVFTGLSGSGKSSL 42
567789***********************986 PP
== domain 2 score: 10.6 bits; conditional E-value: 0.0012
TIGR03740 107 evlkivdlente.kkkakqfslGmkqrlGiaiallnk..PkllildePtnGldPlGiqelreliksfpekGitvilssh 182
+ l+ v+l + ++a+ +s G qr+ +a + + l +ldeP+ Gl ++l + +k +++ G t+i+ h
MMSYN1_0824 474 NFLNEVGLGYLNlSRTATTLSGGESQRIRLAKQIGSQltGILYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEH 552
5678888876552688999**********99988765215688********************************9988 PP
== domain 3 score: 10.5 bits; conditional E-value: 0.0014
TIGR03740 14 avvnnvslkvkknsvygllGpnGaGkstllkll 46
+ ++n++++++ n+ ++ G+ G+Gkstll +
MMSYN1_0824 625 NNLKNINVTIPLNKFITITGVSGSGKSTLLEDI 657
5689*************************9754 PP
== domain 4 score: 16.2 bits; conditional E-value: 2.3e-05
TIGR03740 103 srieevlkivdlente.kkkakqfslGmkqrlGiaiallnkP...kllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhi 194
+++e +l+ v+l ++ ++a+ +s G qr+ ++ ll+k +++ldePt Gl ++ l +++ + + G tv+ h l ++ ++dhi
MMSYN1_0824 811 QKLETILE-VGLGYIKlGQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLDFIK-VSDHI 904
34444444.566665525789999***************985333699************************************998886.56665 PP
>> TIGR01192 chvA: glucan exporter ATP-binding protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.1 0.0 2.4e-05 0.0015 428 563 .. 451 593 .. 439 613 .. 0.76
2 ? -0.5 0.0 1.3 81 347 379 .. 623 655 .. 619 680 .. 0.81
3 ! 17.7 0.0 4e-06 0.00025 464 562 .. 825 933 .. 812 944 .. 0.78
Alignments for each domain:
== domain 1 score: 15.1 bits; conditional E-value: 2.4e-05
TIGR01192 428 nirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailkn.apil.vldeatsaldvetearvkdaidalrknrtt 523
ni l ++at +++v + + ++f+++ gy+ l + lsgge qr+ +a+ i + + il vlde + l + + ++ +++ lr t
MMSYN1_0824 451 NIDLTPTQATIAKLVL-DEIISRTNFLNEVGLGYLNL-SRTATTLSGGESQRIRLAKQIGSQlTGILyVLDEPSIGLHQKDNDKLIKTLKHLRDLGNT 546
7888888888888875.57789999999999999976.567889***************8652445449************9999999****997777 PP
TIGR01192 524 fi.iahrlstvreadlvlfld......qgrliekgsfdeliqkdgrf 563
+i + h t++ +d ++ + g + g+++++ ++d
MMSYN1_0824 547 LIvVEHDEDTMKSSDWIVDIGprageyGGEITFSGTYQDILKSDTIT 593
66167999*******99876422222235666677777777666544 PP
== domain 2 score: -0.5 bits; conditional E-value: 1.3
TIGR01192 347 ssqgvrdvsfeakagqtvaivgptgagkttlin 379
s++ ++++ ++ + ++i g +g+gk+tl++
MMSYN1_0824 623 SENNLKNINVTIPLNKFITITGVSGSGKSTLLE 655
56677899999999999*************986 PP
== domain 3 score: 17.7 bits; conditional E-value: 4e-06
TIGR01192 464 lvgergnrlsggerqrlaiarailkn...apilvldeatsaldvetearvkdaidalrk.nrttfiiahrlstvreadlvlfl..d....qgrliekg 551
++g+ + lsgge qr+ ++ +lk +++lde t+ l v+ r+ ++ l t + i h l ++ +d ++ l d g+++ g
MMSYN1_0824 825 KLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDlGNTVLCIEHNLDFIKVSDHIIDLgpDggeyGGQVVVTG 922
5689999*****************9733246999***********999999998877652678899************99987332222235677777 PP
TIGR01192 552 sfdeliqkdgr 562
+ +++i++
MMSYN1_0824 923 TPEQIINHPTS 933
77777766555 PP
>> TIGR00958 3a01208: antigen peptide transporter 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.0 1.6 1e+02 497 524 .. 16 43 .. 12 48 .. 0.88
2 ? 3.5 0.0 0.061 3.9 610 686 .. 485 566 .. 469 593 .. 0.74
3 ? 2.6 0.1 0.11 7.2 497 523 .. 627 653 .. 622 658 .. 0.90
4 ! 22.3 0.0 1.3e-07 8.3e-06 610 707 .. 825 934 .. 815 937 .. 0.81
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 1.6
TIGR00958 497 lkdLtftlepGevvalVGPsGsGKStva 524
lk++ + l + + G sGsGKS+ a
MMSYN1_0824 16 LKNIDLELPKNKLIVFTGLSGSGKSSLA 43
78888999999999999********987 PP
== domain 2 score: 3.5 bits; conditional E-value: 0.061
TIGR00958 610 evgekGsqlsgGqkqriAiARALvrk..PrvLiLDeAtSALDa.eveqllqesksaks..rtvlliahrLstvekadkilvl 686
++ + + lsgG qri +A+ + + + +LDe L + ++l+++ k+ ++ t++++ h t++ +d i+ +
MMSYN1_0824 485 NLSRTATTLSGGESQRIRLAKQIGSQltGILYVLDEPSIGLHQkDNDKLIKTLKHLRDlgNTLIVVEHDEDTMKSSDWIVDI 566
66778899*************998762245779********995556666666666542279******99999999998866 PP
== domain 3 score: 2.6 bits; conditional E-value: 0.11
TIGR00958 497 lkdLtftlepGevvalVGPsGsGKStv 523
lk+++ t+ + +++ G sGsGKSt
MMSYN1_0824 627 LKNINVTIPLNKFITITGVSGSGKSTL 653
899**********************97 PP
== domain 4 score: 22.3 bits; conditional E-value: 1.3e-07
TIGR00958 610 evgekGsqlsgGqkqriAiARALvrkP...rvLiLDeAtSALDa.eveqllqesksaks..rtvlliahrLstvekadkilvlk......kgsvvelG 695
++g++ + lsgG qri + L++k ++ +LDe t L + +v++l+ ++ + tvl i h L ++ +d+i+ l g+vv +G
MMSYN1_0824 825 KLGQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVdDVKRLIGVLNKLVDlgNTVLCIEHNLDFIKVSDHIIDLGpdggeyGGQVVVTG 922
5789999******************9633379************999999999887764228*******************99633222235788888 PP
TIGR00958 696 thkqLmekedvy 707
t +q+ ++++ y
MMSYN1_0824 923 TPEQIINHPTSY 934
888887777766 PP
>> TIGR01288 nodI: nodulation ABC transporter NodI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.7 0.1 0.00036 0.023 134 193 .. 491 552 .. 483 567 .. 0.84
2 ! 18.7 0.0 2.6e-06 0.00016 116 196 .. 813 896 .. 790 932 .. 0.72
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 0.00036
TIGR01288 134 adlsggmkrrltlaralind..pqllildepttgldpharhliwerlrsllargktilltth 193
++lsgg +r+ la+ + + l +ldep+ gl + + + l+ l +g+t+++ h
MMSYN1_0824 491 TTLSGGESQRIRLAKQIGSQltGILYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEH 552
689***********998776225689************999999************999888 PP
== domain 2 score: 18.7 bits; conditional E-value: 2.6e-06
TIGR01288 116 ipsllefarleskadvrvadlsggmkrrltlaralind...pqllildepttgldpharhliwerlrsllargktilltthlme 196
+ ++le k + ++lsgg +r+ l++ l++ +++ldepttgl + + l l+ +g+t+l h ++
MMSYN1_0824 813 LETILEVGLGYIKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLD 896
34444444444455556678**************99862225799*********99888888899************9999654 PP
>> TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.7 0.0 0.015 0.92 442 470 .. 16 44 .. 11 51 .. 0.91
2 ? 3.1 0.0 0.046 2.9 1350 1415 .. 489 557 .. 473 572 .. 0.71
3 ? 3.8 0.0 0.028 1.8 441 472 .. 626 657 .. 617 664 .. 0.85
4 ! 8.2 0.0 0.0013 0.083 540 620 .. 824 907 .. 794 918 .. 0.82
Alignments for each domain:
== domain 1 score: 4.7 bits; conditional E-value: 0.015
TIGR01271 442 lknislklekgqllavagstgsgkssllm 470
lkni+l+l k +l+ +g +gsgkssl +
MMSYN1_0824 16 LKNIDLELPKNKLIVFTGLSGSGKSSLAF 44
9*************************965 PP
== domain 2 score: 3.1 bits; conditional E-value: 0.046
TIGR01271 1350 ggyvlsnghkqlmclarsilskak.il.lldepsafldpvtlqiirktlkqafs.nctvilsehrveal 1415
ls g q + la+ i s+ il +ldeps l + + ktlk+ t+i+ eh +++
MMSYN1_0824 489 TATTLSGGESQRIRLAKQIGSQLTgILyVLDEPSIGLHQKDNDKLIKTLKHLRDlGNTLIVVEHDEDTM 557
456678888888888888888754233257888888888888888888887543145777777765554 PP
== domain 3 score: 3.8 bits; conditional E-value: 0.028
TIGR01271 441 vlknislklekgqllavagstgsgkssllmmi 472
lkni++ + ++++++g +gsgks+ll i
MMSYN1_0824 626 NLKNINVTIPLNKFITITGVSGSGKSTLLEDI 657
58999999999999999999999999998665 PP
== domain 4 score: 8.2 bits; conditional E-value: 0.0013
TIGR01271 540 tvlgeggitlsggqrarislaravykd...adlylldspfsyldvvtekeifesclcklla.nktrilvtsklehlkkadkilll 620
+ lg+ tlsgg+ ri l+ + k ++lld p + l v k ++ l kl+ t + + l+ +k +d+i+ l
MMSYN1_0824 824 IKLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIG-VLNKLVDlGNTVLCIEHNLDFIKVSDHIIDL 907
6789999**************999886222479************99998875.7888886256777788999999999999755 PP
>> TIGR00956 3a01205: pleiotropic drug resistance family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.0 0.0 0.055 3.4 922 960 .. 514 552 .. 494 557 .. 0.82
2 ? 0.1 0.0 0.41 26 77 807 .. 627 655 .. 615 669 .. 0.60
3 ! 13.3 0.0 4.1e-05 0.0026 922 960 .. 855 893 .. 829 906 .. 0.88
Alignments for each domain:
== domain 1 score: 3.0 bits; conditional E-value: 0.055
TIGR00956 922 lllFlDePtsGLDsqtawsivkllrkladaGqailCtiH 960
+l lDeP GL + ++k+l++l d G++++ H
MMSYN1_0824 514 ILYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEH 552
56779***************************9987666 PP
== domain 2 score: 0.1 bits; conditional E-value: 0.41
TIGR00956 77 lkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeikkhyrgdvvYsaetdvHlpsltvketLdfaarlktpqnRvkg 174
lk+++ i +++
MMSYN1_0824 627 LKNINVTIPLNKFIT----------------------------------------------------------------------------------- 641
444444444444444................................................................................... PP
TIGR00956 175 vsreeyakkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasq 272
MMSYN1_0824 - -------------------------------------------------------------------------------------------------- -
.................................................................................................. PP
TIGR00956 273 dayelFdkvvvlyeGkqiyfGkadkakeyFekmGfkCpdRqttadFLtsltspkereikkgyekkvprtakefekywrnspeyaelekeideylerve 370
MMSYN1_0824 - -------------------------------------------------------------------------------------------------- -
.................................................................................................. PP
TIGR00956 371 eekekeaikesavakkskrtrkkskytvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlekntsdfyvrggalffallfnafss 468
MMSYN1_0824 - -------------------------------------------------------------------------------------------------- -
.................................................................................................. PP
TIGR00956 469 lleiaslyearpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilflatlvmshlFrsigavtktlseAmtl 566
MMSYN1_0824 - -------------------------------------------------------------------------------------------------- -
.................................................................................................. PP
TIGR00956 567 aallllalslytgfviprkeilkWskWiayvnPlayafesllvnefharefecsqlvPsgsgyenlsseekvCalvgaepgedyvdgdeylklsfdyk 664
MMSYN1_0824 - -------------------------------------------------------------------------------------------------- -
.................................................................................................. PP
TIGR00956 665 nkhkWrnlgiilafvvffvvvvilllefnkgakkkgeilvfkkgelkkakkkeeeseskkndieagevlkstdltdeseevneeveeekesgeeifew 762
MMSYN1_0824 - -------------------------------------------------------------------------------------------------- -
.................................................................................................. PP
TIGR00956 763 rdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLln 807
+ G+sG Gk tLl+
MMSYN1_0824 642 -------------------------------ITGVSGSGKSTLLE 655
...............................55555555555554 PP
== domain 3 score: 13.3 bits; conditional E-value: 4.1e-05
TIGR00956 922 lllFlDePtsGLDsqtawsivkllrkladaGqailCtiH 960
+ lDePt GL ++ +l kl+d G+++lC H
MMSYN1_0824 855 TMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEH 893
67789*******************************988 PP
>> TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.4 0.0 0.14 8.9 653 681 .. 15 43 .. 8 53 .. 0.86
2 ? 4.9 0.0 0.012 0.78 759 859 .. 491 597 .. 481 608 .. 0.77
3 ? -0.7 0.0 0.62 39 653 682 .. 626 655 .. 612 665 .. 0.76
4 ! 6.3 0.0 0.0047 0.3 753 862 .. 825 942 .. 811 946 .] 0.74
Alignments for each domain:
== domain 1 score: 1.4 bits; conditional E-value: 0.14
TIGR00957 653 tlngltlsipegalvavvgqvgcgkssll 681
l++++l++p+ l+ g g gkssl
MMSYN1_0824 15 NLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
6899***********************95 PP
== domain 2 score: 4.9 bits; conditional E-value: 0.012
TIGR00957 759 vnlsggqkqrvslaravysd..adiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivls......dgkisemgsyqel 848
lsgg+ qr+ la+ + s+ +y+ld+p + + ++++ + + l ++t i+v h + d i+ + +g+i+ g+yq++
MMSYN1_0824 491 TTLSGGESQRIRLAKQIGSQltGILYVLDEPSIGLHQKDNDKLIKTLKHLRDL--GNTLIVVEHDEDTMKSSDWIVDIGprageyGGEITFSGTYQDI 586
679***************983245899****8777666555555444433333..689999************9998744444447999999*****9 PP
TIGR00957 849 ldrdgafaefl 859
l+ d +l
MMSYN1_0824 587 LKSDTITGRYL 597
99987666665 PP
== domain 3 score: -0.7 bits; conditional E-value: 0.62
TIGR00957 653 tlngltlsipegalvavvgqvgcgksslls 682
l++++++ip ++++ g g gks+ll
MMSYN1_0824 626 NLKNINVTIPLNKFITITGVSGSGKSTLLE 655
466777777777777777777777777765 PP
== domain 4 score: 6.3 bits; conditional E-value: 0.0047
TIGR00957 753 eigekgvnlsggqkqrvslaravysd...adiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivls......dgkise 841
++g++ lsgg+ qr+ l+ + + ++lld+p + + k ++ + k + ++t + + h++ ++ d ii l +g++
MMSYN1_0824 825 KLGQNATTLSGGESQRIKLSTYLLKKqtgNTMFLLDEPTTGLHVDDVKRLIG--VLNKLVDLGNTVLCIEHNLDFIKVSDHIIDLGpdggeyGGQVVV 920
6899999************9987654122679******99886665555543..223445567899999**************985444444678888 PP
TIGR00957 842 mgsyqelldrdgaf.aeflrty 862
g+ +++++ ++ a++l++y
MMSYN1_0824 921 TGTPEQIINHPTSYtAKYLKDY 942
8888888887777646777777 PP
>> TIGR00041 DTMP_kinase: dTMP kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.2 0.0 0.055 3.5 3 21 .. 25 43 .. 23 57 .. 0.85
2 ! 11.2 0.0 0.00082 0.052 4 26 .. 637 659 .. 634 672 .. 0.79
Alignments for each domain:
== domain 1 score: 5.2 bits; conditional E-value: 0.055
TIGR00041 3 kgkfiviEGidGaGKTtql 21
k+k+iv+ G+ G+GK++++
MMSYN1_0824 25 KNKLIVFTGLSGSGKSSLA 43
689*************975 PP
== domain 2 score: 11.2 bits; conditional E-value: 0.00082
TIGR00041 4 gkfiviEGidGaGKTtqlellkk 26
+kfi+i G+ G+GK+t+le ++
MMSYN1_0824 637 NKFITITGVSGSGKSTLLEDIVY 659
79**************9986653 PP
>> TIGR00455 apsK: adenylyl-sulfate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.5 0.0 0.0052 0.33 19 37 .. 27 45 .. 16 58 .. 0.82
2 ! 7.7 0.0 0.0098 0.62 20 49 .. 639 668 .. 618 679 .. 0.79
Alignments for each domain:
== domain 1 score: 8.5 bits; conditional E-value: 0.0052
TIGR00455 19 vvlWltGlsgsGkstiana 37
++ +tGlsgsGks +a +
MMSYN1_0824 27 KLIVFTGLSGSGKSSLAFS 45
5789***********9964 PP
== domain 2 score: 7.7 bits; conditional E-value: 0.0098
TIGR00455 20 vlWltGlsgsGkstianalekkLeekglrv 49
+ +tG+sgsGkst+ + + k +++l+
MMSYN1_0824 639 FITITGVSGSGKSTLLEDIVYKGIHNNLSK 668
5789**********9877665555555555 PP
>> TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.2 0.0 0.08 5.1 340 378 .. 5 43 .. 1 58 [. 0.83
2 ! 11.5 0.0 0.00025 0.016 343 388 .. 619 665 .. 604 673 .. 0.82
3 ? -3.6 0.0 9.1 5.8e+02 201 226 .. 896 921 .. 893 923 .. 0.90
Alignments for each domain:
== domain 1 score: 3.2 bits; conditional E-value: 0.08
TIGR03925 340 ervllGleesdlapvaldfaeephllvlGdsesGktall 378
+ ++ G +e++l+ + l++ +++ ++ G s+sGk++l
MMSYN1_0824 5 KIIIKGAREHNLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
557779******************************975 PP
== domain 2 score: 11.5 bits; conditional E-value: 0.00025
TIGR03925 343 llGleesdlapvaldfaeephllvlGdsesGktallraia.eevver 388
++G +e++l+ + + + ++ + + G s+sGk++ll+ i+ +++ ++
MMSYN1_0824 619 IIGASENNLKNINVTIPLNKFITITGVSGSGKSTLLEDIVyKGIHNN 665
68**********************************99872445444 PP
== domain 3 score: -3.6 bits; conditional E-value: 9.1
TIGR03925 201 dfedleekvtelaarGlsygvhvvvt 226
df ++++++ +l +G +yg vvvt
MMSYN1_0824 896 DFIKVSDHIIDLGPDGGEYGGQVVVT 921
788999******************98 PP
>> TIGR00618 sbcc: exonuclease SbcC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.8 0.0 0.99 63 25 43 .. 23 42 .. 15 48 .. 0.84
2 ? -0.2 0.0 0.65 41 947 963 .. 488 504 .. 483 556 .. 0.63
3 ! 10.5 0.0 0.00038 0.024 22 49 .. 632 659 .. 625 664 .. 0.86
4 ? -0.4 0.0 0.72 46 949 964 .. 830 845 .. 802 894 .. 0.80
Alignments for each domain:
== domain 1 score: -0.8 bits; conditional E-value: 0.99
TIGR00618 25 lg.lklfvicGktGaGKtsL 43
l+ +kl v +G G+GK+sL
MMSYN1_0824 23 LPkNKLIVFTGLSGSGKSSL 42
56699**************9 PP
== domain 2 score: -0.2 bits; conditional E-value: 0.65
TIGR00618 947 RpvetlSGGEtFlasls 963
R tlSGGE+ ++ l+
MMSYN1_0824 488 RTATTLSGGESQRIRLA 504
8889******9988765 PP
== domain 3 score: 10.5 bits; conditional E-value: 0.00038
TIGR00618 22 ftalg.lklfvicGktGaGKtsLldAIty 49
t + +k+ i+G G+GK++Ll+ I y
MMSYN1_0824 632 VT-IPlNKFITITGVSGSGKSTLLEDIVY 659
55.466899*****************998 PP
== domain 4 score: -0.4 bits; conditional E-value: 0.72
TIGR00618 949 vetlSGGEtFlaslsl 964
tlSGGE+ ++ ls
MMSYN1_0824 830 ATTLSGGESQRIKLST 845
68**********9995 PP
>> TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.4 0.0 0.71 45 33 56 .. 21 44 .. 9 74 .. 0.79
2 ! 12.2 0.0 0.00035 0.022 35 81 .. 634 680 .. 620 692 .. 0.84
Alignments for each domain:
== domain 1 score: 1.4 bits; conditional E-value: 0.71
TIGR03420 33 aeakaerllylwGesgsGksHLLq 56
+e +++l+ + G sgsGks L
MMSYN1_0824 21 LELPKNKLIVFTGLSGSGKSSLAF 44
56678899************9854 PP
== domain 2 score: 12.2 bits; conditional E-value: 0.00035
TIGR03420 35 akaerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaqll 81
++++ + G sgsGks LL+ ++ + +++ s ylp+ ++++++
MMSYN1_0824 634 IPLNKFITITGVSGSGKSTLLEDIVYKGIHNNLSKEYLPIGKVKEIK 680
5567899**********************************998865 PP
>> TIGR04435 restrict_AAA_1: restriction system-associated AAA family ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.7 0.0 3.3 2.1e+02 40 53 .. 29 42 .. 14 48 .. 0.86
2 ? 2.2 0.0 0.21 13 41 58 .. 641 658 .. 615 675 .. 0.79
3 ! 10.2 0.0 0.00081 0.051 396 431 .. 831 866 .. 784 888 .. 0.81
Alignments for each domain:
== domain 1 score: -1.7 bits; conditional E-value: 3.3
TIGR04435 40 fvlaGlNGsGKSnv 53
v+ Gl GsGKS +
MMSYN1_0824 29 IVFTGLSGSGKSSL 42
599*********87 PP
== domain 2 score: 2.2 bits; conditional E-value: 0.21
TIGR04435 41 vlaGlNGsGKSnvLeala 58
+ G GsGKS +Le ++
MMSYN1_0824 641 TITGVSGSGKSTLLEDIV 658
3579***********875 PP
== domain 3 score: 10.2 bits; conditional E-value: 0.00081
TIGR04435 396 kelSDGEhqllhslGlcllfketnslfLLDEPEtHf 431
lS GE q ++ +l ++ n++fLLDEP t +
MMSYN1_0824 831 TTLSGGESQRIKLSTYLLKKQTGNTMFLLDEPTTGL 866
579******99866666666667*********9965 PP
>> TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.5 0.1 4.6 2.9e+02 470 495 .. 17 42 .. 7 44 .. 0.83
2 ? 2.2 0.0 0.17 11 577 658 .. 486 573 .. 458 574 .. 0.68
3 ? -3.0 0.2 6.5 4.1e+02 469 496 .. 627 654 .. 615 657 .. 0.80
4 ! 10.1 0.0 0.00073 0.046 563 656 .. 812 911 .. 798 915 .. 0.84
Alignments for each domain:
== domain 1 score: -2.5 bits; conditional E-value: 4.6
TIGR00954 470 eeLsfevksGnhlLiiGPnGcGKssl 495
+++ +e+++ + ++ +G G GKssl
MMSYN1_0824 17 KNIDLELPKNKLIVFTGLSGSGKSSL 42
5677888898889999*********8 PP
== domain 2 score: 2.2 bits; conditional E-value: 0.17
TIGR00954 577 vqdWkdvLsgGekqRiamARlfyHk..PkfavLDEctsAvsvdvEdklye...lakevgitllsvshrksLwkyHeylLkld.gkGky 658
+ LsgGe qRi +A+ + + vLDE + +dkl + +++++g tl+ v h + +k +++++++ + G+y
MMSYN1_0824 486 LSRTATTLSGGESQRIRLAKQIGSQltGILYVLDEPSIGLHQKDNDKLIKtlkHLRDLGNTLIVVEHDEDTMKSSDWIVDIGpRAGEY 573
5555678************987655113456788888888777777775411155667788888888777777777777776566665 PP
== domain 3 score: -3.0 bits; conditional E-value: 6.5
TIGR00954 469 ieeLsfevksGnhlLiiGPnGcGKsslf 496
++++++ ++ + + i+G G GKs l
MMSYN1_0824 627 LKNINVTIPLNKFITITGVSGSGKSTLL 654
578899999999999**********985 PP
== domain 4 score: 10.1 bits; conditional E-value: 0.00073
TIGR00954 563 kLedllereggwdavqdWkdvLsgGekqRiamARlfyHkP...kfavLDEctsAvsvdvEdkl...yelakevgitllsvshrksLwkyHeylLkldg 654
kLe +le + g+ + + LsgGe qRi + + k +LDE t + vd ++l +++ ++g t+l + h +k +++++l+
MMSYN1_0824 812 KLETILEVGLGYIKLGQNATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHVDDVKRLigvLNKLVDLGNTVLCIEHNLDFIKVSDHIIDLGP 909
799******************************99999862225789**********87776612246666789999999999999999999999986 PP
TIGR00954 655 kG 656
+G
MMSYN1_0824 910 DG 911
66 PP
>> TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.2 0.0 0.003 0.19 108 138 .. 11 42 .. 3 54 .. 0.81
2 ? 4.7 0.1 0.073 4.6 110 143 .. 624 658 .. 614 671 .. 0.71
Alignments for each domain:
== domain 1 score: 9.2 bits; conditional E-value: 0.003
TIGR00157 108 kneegleelkekl.kkrisvfaGqSGVGKSSL 138
e++l+++ +l k+++ vf+G SG GKSSL
MMSYN1_0824 11 AREHNLKNIDLELpKNKLIVFTGLSGSGKSSL 42
466778888777747899*************9 PP
== domain 2 score: 4.7 bits; conditional E-value: 0.073
TIGR00157 110 eegleelkekl.kkrisvfaGqSGVGKSSLiNlld 143
e++l++++ ++ +++ ++G SG GKS L+ ++
MMSYN1_0824 624 ENNLKNINVTIpLNKFITITGVSGSGKSTLLEDIV 658
44555554443136777789***********9886 PP
>> TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.1 0.0 1.9 1.2e+02 351 384 .. 10 43 .. 5 50 .. 0.88
2 ? 3.6 0.0 0.073 4.6 449 541 .. 471 565 .. 432 570 .. 0.72
3 ? 2.8 0.1 0.13 8 351 385 .. 621 655 .. 614 674 .. 0.84
4 ? 4.6 0.0 0.037 2.3 465 543 .. 829 908 .. 800 913 .. 0.78
Alignments for each domain:
== domain 1 score: -1.1 bits; conditional E-value: 1.9
TIGR01194 351 ssegfalGpidlriasGelvyivGenGcGkstli 384
++ +l idl + + +l+ G G Gks+l+
MMSYN1_0824 10 GAREHNLKNIDLELPKNKLIVFTGLSGSGKSSLA 43
667788999**********************997 PP
== domain 2 score: 3.6 bits; conditional E-value: 0.073
TIGR01194 449 srleledkvkvedlnys.tttdlstGqrkrlalvnay..leerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlik 541
sr ++ + v + ln s t+t ls G+ +r+ l +++lde + + + + l l+ G t++v+ hd+ ++ +d ++
MMSYN1_0824 471 SRTNFLNEVGLGYLNLSrTATTLSGGESQRIRLAKQIgsQLTGILYVLDEPSIGLHQKDNDKLI-KTLKHLRDLGNTLIVVEHDEDTMKSSDWIVD 565
5556666677777788734588999865555554333003345789999987654333333222.346778888***********99999998875 PP
== domain 3 score: 2.8 bits; conditional E-value: 0.13
TIGR01194 351 ssegfalGpidlriasGelvyivGenGcGkstlik 385
+++ +l i+++i +++ i G G Gkstl+
MMSYN1_0824 621 GASENNLKNINVTIPLNKFITITGVSGSGKSTLLE 655
556678999***********************986 PP
== domain 4 score: 4.6 bits; conditional E-value: 0.037
TIGR01194 465 stttdlstGqrkrlalvnayleer...pvllldewaadqd.pafkrvfyeellpdlkrrGktilvishddryfeladrlikla 543
+t ls G+ +r+ l + l+++ ++llde ++ kr+ +l l G t+l i h+ + +++d++i l
MMSYN1_0824 829 N-ATTLSGGESQRIKLSTYLLKKQtgnTMFLLDEPTTGLHvDDVKRLI--GVLNKLVDLGNTVLCIEHNLDFIKVSDHIIDLG 908
3.6889999999999987777664233699999998765414678876..578888889*********************985 PP
>> TIGR02524 dot_icm_DotB: Dot/Icm secretion system ATPase DotB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.9 0.0 0.37 24 128 155 .. 20 47 .. 14 64 .. 0.83
2 ! 9.3 0.0 0.0022 0.14 127 160 .. 630 663 .. 620 672 .. 0.83
3 ? -1.9 0.0 5.5 3.5e+02 77 112 .. 725 761 .. 716 764 .. 0.88
Alignments for each domain:
== domain 1 score: 1.9 bits; conditional E-value: 0.37
TIGR02524 128 eaiapqegvvyvtgatgsgkstllaaii 155
+ p++ ++ tg +gsgks+l + i
MMSYN1_0824 20 DLELPKNKLIVFTGLSGSGKSSLAFSTI 47
555688999999**********987765 PP
== domain 2 score: 9.3 bits; conditional E-value: 0.0022
TIGR02524 127 veaiapqegvvyvtgatgsgkstllaaiirelie 160
++ p + + +tg +gsgkstll i+ + i
MMSYN1_0824 630 INVTIPLNKFITITGVSGSGKSTLLEDIVYKGIH 663
566678889999**************99977665 PP
== domain 3 score: -1.9 bits; conditional E-value: 5.5
TIGR02524 77 eirpnrnvryryrvnatac.lvegheaiqitlraipa 112
+ir ++ r+ + v + c + +g i i+++ +p+
MMSYN1_0824 725 KIRGYKKGRFSFNVSGGRCeHCQGDGVITISMQFMPS 761
58889999********999678999999999998886 PP
>> TIGR03263 guanyl_kin: guanylate kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.7 0.0 0.039 2.4 2 38 .. 27 65 .. 26 74 .. 0.73
2 ? 5.7 0.1 0.038 2.4 2 23 .. 638 659 .. 637 668 .. 0.81
Alignments for each domain:
== domain 1 score: 5.7 bits; conditional E-value: 0.039
TIGR03263 2 klivisgpsGvGKstlvkklle..ekeelklsvSattRk 38
kliv++g sG GKs+l+ + + +++ s+Sa +R+
MMSYN1_0824 27 KLIVFTGLSGSGKSSLAFSTIYqeGRRRYIESLSAYARQ 65
79**************86655412344466677777765 PP
== domain 2 score: 5.7 bits; conditional E-value: 0.038
TIGR03263 2 klivisgpsGvGKstlvkklle 23
k i i+g sG GKstl++ ++
MMSYN1_0824 638 KFITITGVSGSGKSTLLEDIVY 659
56889************99876 PP
>> TIGR04355 HprK_rel_B: HprK-related kinase B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.4 0.0 0.13 8.2 157 176 .. 27 46 .. 23 53 .. 0.82
2 ! 7.7 0.0 0.0062 0.39 157 193 .. 638 675 .. 627 730 .. 0.69
Alignments for each domain:
== domain 1 score: 3.4 bits; conditional E-value: 0.13
TIGR04355 157 rGlalaGfsGmGkstlalhl 176
+ ++++G+sG Gks la+
MMSYN1_0824 27 KLIVFTGLSGSGKSSLAFST 46
557899***********864 PP
== domain 2 score: 7.7 bits; conditional E-value: 0.0062
TIGR04355 157 rGlalaGfsGmGkstlalhlmskGvt.fvsndrilver 193
+ ++++G+sG Gkstl ++ kG+ +s + + + +
MMSYN1_0824 638 KFITITGVSGSGKSTLLEDIVYKGIHnNLSKEYLPIGK 675
56899******************985256666665554 PP
>> TIGR00750 lao: LAO/AO transport system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.6 0.0 0.94 59 33 60 .. 25 53 .. 13 57 .. 0.73
2 ? 9.0 0.0 0.0026 0.17 29 57 .. 632 660 .. 618 667 .. 0.78
Alignments for each domain:
== domain 1 score: 0.6 bits; conditional E-value: 0.94
TIGR00750 33 rahvvGltGvPGaGkstl.veklieelrr 60
+ + + +tG+ G Gks l + + +e rr
MMSYN1_0824 25 KNKLIVFTGLSGSGKSSLaFSTIYQEGRR 53
567889*********99724555555555 PP
== domain 2 score: 9.0 bits; conditional E-value: 0.0026
TIGR00750 29 pktGrahvvGltGvPGaGkstlvekliee 57
+ + + +tGv G Gkstl+e ++ +
MMSYN1_0824 632 VTIPLNKFITITGVSGSGKSTLLEDIVYK 660
5555567899*************998755 PP
>> TIGR03881 KaiC_arch_4: KaiC domain protein, PAE1156 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.3 0.0 0.83 53 17 44 .. 22 49 .. 13 55 .. 0.84
2 ? -1.9 0.2 8.3 5.2e+02 72 99 .. 192 219 .. 156 232 .. 0.60
3 ? 6.9 0.0 0.017 1.1 14 51 .. 630 667 .. 621 686 .. 0.88
Alignments for each domain:
== domain 1 score: 1.3 bits; conditional E-value: 0.83
TIGR03881 17 GiPrGffvavvGePGvGktilclhfiak 44
+P+ +++ +G G Gk+ l++ i++
MMSYN1_0824 22 ELPKNKLIVFTGLSGSGKSSLAFSTIYQ 49
68*****************998877764 PP
== domain 2 score: -1.9 bits; conditional E-value: 8.3
TIGR03881 72 gldlekfkeekklviidallkekedews 99
+++lek + ++ +++d+++ +++de +
MMSYN1_0824 192 QINLEKNQRHNIDIVVDRIIYHNNDEIN 219
2445555544445566666666666655 PP
== domain 3 score: 6.9 bits; conditional E-value: 0.017
TIGR03881 14 leGGiPrGffvavvGePGvGktilclhfiakGlregdk 51
++ iP f++++G G Gk+ l ++kG++++ +
MMSYN1_0824 630 INVTIPLNKFITITGVSGSGKSTLLEDIVYKGIHNNLS 667
677899***************************98755 PP
>> TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.1 0.0 0.0098 0.62 2 27 .. 20 45 .. 19 199 .. 0.86
2 ? 1.5 0.1 0.24 15 2 24 .. 631 653 .. 630 660 .. 0.89
Alignments for each domain:
== domain 1 score: 6.1 bits; conditional E-value: 0.0098
TIGR04075 2 kleipelslvvlvGasgsGkstfark 27
+le+p+ l+v+ G sgsGks++a
MMSYN1_0824 20 DLELPKNKLIVFTGLSGSGKSSLAFS 45
5899*****************99854 PP
== domain 2 score: 1.5 bits; conditional E-value: 0.24
TIGR04075 2 kleipelslvvlvGasgsGkstf 24
+++ip ++ + G+sgsGkst+
MMSYN1_0824 631 NVTIPLNKFITITGVSGSGKSTL 653
678999999************97 PP
>> TIGR02349 DnaJ_bact: chaperone protein DnaJ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.2 0.0 0.74 47 177 195 .. 400 418 .. 394 429 .. 0.76
2 ? 8.1 0.8 0.0057 0.36 162 195 .. 742 772 .. 734 780 .. 0.87
Alignments for each domain:
== domain 1 score: 1.2 bits; conditional E-value: 0.74
TIGR02349 177 gtllgffqsqqtCseCkGe 195
++++ f+s+++C++CkG+
MMSYN1_0824 400 RKWYSKFMSSKICKQCKGS 418
5567778888888888885 PP
== domain 2 score: 8.1 bits; conditional E-value: 0.0057
TIGR02349 162 tCktCgGtGqvrkqqgtllgffqsqqtCseCkGe 195
C++C+G G+++ + + ++ +++ C+ C+G+
MMSYN1_0824 742 RCEHCQGDGVITISMQ---FMPSVEVVCEICEGK 772
6*********999997...5778899*******8 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (946 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 331 (0.0737522); expected 89.8 (0.02)
Passed bias filter: 227 (0.0505793); expected 89.8 (0.02)
Passed Vit filter: 96 (0.0213904); expected 4.5 (0.001)
Passed Fwd filter: 71 (0.01582); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 71 [number of targets reported over threshold]
# CPU time: 0.81u 0.51s 00:00:01.32 Elapsed: 00:00:00.81
# Mc/sec: 1677.16
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0824 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0825 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0825.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0825/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0825 [L=665]
Description: uvrb: excinuclease ABC subunit B 5=Equivalog DNA repair
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-288 955.3 18.0 3.9e-288 955.1 18.0 1.0 1 TIGR00631 uvrb: excinuclease ABC subunit B
3.4e-20 69.9 14.3 2.7e-12 43.8 0.0 4.0 4 TIGR00580 mfd: transcription-repair coupling factor
5.6e-12 42.9 5.4 2.5e-09 34.2 3.6 2.2 2 TIGR00595 priA: primosomal protein N'
1.1e-11 42.1 10.8 7.8e-08 29.4 0.1 3.1 3 TIGR00643 recG: ATP-dependent DNA helicase RecG
2.4e-11 41.2 5.0 2.9e-08 31.1 1.9 2.4 2 TIGR04095 dnd_restrict_1: DNA phosphorothioation system rest
2.2e-06 24.7 0.8 5.8e-06 23.3 0.5 1.8 2 TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
7.9e-06 22.5 1.2 1.3e-05 21.8 0.2 1.7 1 TIGR01389 recQ: ATP-dependent DNA helicase RecQ
6.3e-05 18.8 0.7 0.00089 15.0 0.1 2.3 2 TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-asso
0.0016 16.4 0.2 0.0016 16.4 0.2 2.8 3 TIGR03499 FlhF: flagellar biosynthesis protein FlhF
0.0058 13.8 0.8 0.012 12.8 0.0 1.8 2 TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood A
------ inclusion threshold ------
0.011 12.3 0.2 0.011 12.3 0.2 2.9 4 TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
0.062 12.3 0.1 0.062 12.3 0.1 2.5 2 TIGR03021 pilP_fam: type IV pilus biogenesis protein PilP
Domain annotation for each model (and alignments):
>> TIGR00631 uvrb: excinuclease ABC subunit B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 955.1 18.0 1e-290 3.9e-288 2 657 .. 8 658 .. 7 659 .. 0.98
Alignments for each domain:
== domain 1 score: 955.1 bits; conditional E-value: 1e-290
TIGR00631 2 fklkseykPaGDqpkaieklvesleagekeqvLlGvtGsGktftianviakvqkPtlvlahnktLaaqLyeelkelfPenaveyfvsyyDyyqPeayv 99
+kl ++ykP+GDq +aiekl +++ +++k+qvLlG+tG+Gktftian+iak +k +lv+ahnktLa qLy elke+fPen+veyfvs +D++qPeay+
MMSYN1_0825 8 YKLVTKYKPSGDQNQAIEKLNKGIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIAHNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYI 105
89************************************************************************************************ PP
TIGR00631 100 pskdlyiekdasindeierlrlsatksllerrDvivvasvsaiyglgsPeeylklalklevgkeidreelleklvelqyerndvelergkfrvrGdvv 197
pskdlyi+kd+ n e++++rlsa ++ll+r+D+ivvasv+a ++l +P ey+++ ++l+vg++i+r+ell+ lv+ y+rnd+e + g+f+++Gdvv
MMSYN1_0825 106 PSKDLYIDKDSRQNMELDMMRLSACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRNDIENQLGSFSAKGDVV 203
************************************************************************************************** PP
TIGR00631 198 eifpaeeeelavrielfddeierislldpltgevlkeleeltifpashyvvpeekleeaikeikeeleerlkvleeenklleaqrlkqrteyDlemlk 295
+i+p +++++ri+lfddeie+i++l+++t+++l++++++ti+pa+ y++p++kl++++++i++el +rl++l++enklleaqrl+qrt+yDle l+
MMSYN1_0825 204 KIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIHPAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLE 301
************************************************************************************************** PP
TIGR00631 296 elGyckGienysrhlegrkagepPatlldylpedfllviDeshvtlpqlrgmyegDrsrkktLveyGfrLPsaldnrPlkfeefeekvkqvvyvsatP 393
e+G+c+Gienys hl+ r++g++P+ lldy+++df+ +iDesh+tlpq+rgmy++Drsrk tLveyGfrLPsaldnrPl+f+ef++ +kqv+y satP
MMSYN1_0825 302 EFGFCSGIENYSSHLDFRSKGQRPYVLLDYFNNDFITIIDESHITLPQIRGMYNTDRSRKLTLVEYGFRLPSALDNRPLNFDEFNSLIKQVIYTSATP 399
************************************************************************************************** PP
TIGR00631 394 gklelekseeevveqiirPtgllDPevevrptegqvddlleeirervaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrk 491
g++el+ +++vv+qiirPtgllDP++e+r+t++q+dd+++ei+ r+ +nerv++ttlt++m+edlt +l+e +ikv+ylhse++tler ei++dLrk
MMSYN1_0825 400 GDYELDLVNHQVVQQIIRPTGLLDPQIEIRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLERSEILNDLRK 497
************************************************************************************************** PP
TIGR00631 492 gefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarnveGkvilyadkitesmekaieeterrrkiqieyneehgitPktikkk 589
g +dv+vG+nLLreGlDlPevslv+ilDadk+Gflr+ rsLiqtiGr arnv+Gk+i+yad+++++m++ai+et+rrrkiq+e+n++h+itPkti+k+
MMSYN1_0825 498 GVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVARNVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNITPKTISKA 595
************************************************************************************************** PP
TIGR00631 590 ikeilekkekekekeakkkkkkaaeeaeklsekelkklikklekemkeaakdlefeeaaklrDeikel 657
i+e + ++++k+ +++kk ++ +k++ + ++++i++l++em +aak+l+fe+aa lrD+i el
MMSYN1_0825 596 ISESILSEQTKKTLAKAKK-----IKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIEL 658
**99987654444444444.....2345567889*******************************998 PP
>> TIGR00580 mfd: transcription-repair coupling factor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.0 0.0 0.00048 0.18 446 523 .. 12 85 .. 4 96 .. 0.84
2 ! 43.8 0.0 7.1e-15 2.7e-12 1 99 [. 179 286 .. 179 343 .. 0.75
3 ! 23.6 1.2 9.1e-09 3.4e-06 661 763 .. 452 557 .. 428 583 .. 0.72
4 ? -2.4 5.1 0.65 2.4e+02 50 124 .. 570 651 .. 560 660 .. 0.43
Alignments for each domain:
== domain 1 score: 8.0 bits; conditional E-value: 0.00048
TIGR00580 446 fpfeeTeDQlkaieevkkDlekekpmDRlvcGDvGfGKTEvamrAafkavldgkQvavlvPTTlLaeQHfetlkeRfk 523
++ DQ +aie+++k + ++k ++ G G GKT + a ++ +kQ v++ La Q + +lke f
MMSYN1_0825 12 TKYKPSGDQNQAIEKLNKGIIENKKH-QVLLGATGTGKTFTI---ANIIAKHNKQALVIAHNKTLAMQLYYELKEMFP 85
679999**************999875.6778********765...34456789********************99886 PP
== domain 2 score: 43.8 bits; conditional E-value: 7.1e-15
TIGR00580 1 lvelgYervdlveeegefsvrGeilDifalsseep.vRieffgdeiesirefdvadqrsleeleeiellpake.illeeetrarakkkaaa.veeaek 95
lv+ gY+r+d ++ g fs +G+++ i++ ++ +Ri++f+deiesi++++ + + l++++++++ pa+ i +++++++ ++ + v++ +
MMSYN1_0825 179 LVRSGYTRNDIENQLGSFSAKGDVVKIVPGWVNNImFRISLFDDEIESIHTLNTITNSILDNITTVTIHPAQSyITPQDKLKTICNNIRNElVQRLAE 276
7899************************976665449***********************************96666666655444332220222222 PP
TIGR00580 96 tek......e 99
+++
MMSYN1_0825 277 LQSenklleA 286
2223333331 PP
== domain 3 score: 23.6 bits; conditional E-value: 9.1e-09
TIGR00580 661 vfyvhnriesieklkeqlrelvPeariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGl....aqLyQLrGRvGR 754
vf + i e+l + l+e ++++a+ H++++ e e++++ k+ +dv v ++ G+d+p++ + i +Adk G+ L Q GRv R
MMSYN1_0825 452 VFITTLTIRMSEDLTAFLQE--KNIKVAYLHSELKTLERSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFlrnyRSLIQTIGRVAR 547
55555555555555555555..478999*****************************************************833334688999***99 PP
TIGR00580 755 s.kkkayayl 763
+ ka y
MMSYN1_0825 548 NvNGKAIMYA 557
6244554443 PP
== domain 4 score: -2.4 bits; conditional E-value: 0.65
TIGR00580 50 efdvadqrsleeleeiellpake......illeeetrarakkkaaaveeaektek.ealkegkkkaglekllpllfeelssl 124
e + + + e ++++++p++ ++l+e+t+++++k+++ + +++k+++ +++ ++ ++ l+++ l fe+ + l
MMSYN1_0825 570 ETNRRRKIQEEFNKKHNITPKTIskaiseSILSEQTKKTLAKAKKIKDKKQKLQTiQQTIDTLRQEMLQAAKELDFERAAIL 651
4443333333444444444444322111233334444444444333333333333444444444444455555555555555 PP
>> TIGR00595 priA: primosomal protein N'
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.3 0.0 0.00047 0.17 2 54 .. 40 89 .. 39 97 .. 0.83
2 ! 34.2 3.6 6.6e-12 2.5e-09 272 457 .. 456 635 .. 447 655 .. 0.81
Alignments for each domain:
== domain 1 score: 8.3 bits; conditional E-value: 0.00047
TIGR00595 2 leGvtGSGKtEvylkviekvlakgksvlvLvPEiaLtaqllkrlkerfgseva 54
l G tG GKt ++i +++k++lv+ +L++ql +lke f ++ +
MMSYN1_0825 40 LLGATGTGKTFTIANII---AKHNKQALVIAHNKTLAMQLYYELKEMFPENRV 89
78********6555555...5679************************87654 PP
== domain 2 score: 34.2 bits; conditional E-value: 6.6e-12
TIGR00595 272 lGtekveeelkkllpkariarldsDttrrkkalealleqfaagkidiliGtqmiaKGldfpkvtlvgvlsaDsglklpdfRaaErtfqlltqvaGRag 369
+ t ++ e l+++l + i+++ + + +++l+++++g d+++G ++ Gld+p+v+lv +l+aD+ l ++R+ l q GR +
MMSYN1_0825 456 TLTIRMSEDLTAFLQEKNIKVAYLHSELKTLERSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRS-------LIQTIGRVA 546
5577889999999988766665555555555569***********************************************8.......78999**** PP
TIGR00595 370 RaekpgevliqtvnPehpaieaalkedyeaFleqelaerkalayPPftrlillvvkgkneekakkvaqklaellk..elldeklevLgpv 457
R + +g+ ++ + + ++ + ea+++ + +++e ++++ ++ ++ i + +++++k+ ++a+k++ + + +++++++++L +
MMSYN1_0825 547 R-NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNITPKTISKAISESILSEQTKKTLAKAKKIKDKKQklQTIQQTIDTLRQE 635
*.889999999978777777777778888888888887777777788999999**************99998776446677777777654 PP
>> TIGR00643 recG: ATP-dependent DNA helicase RecG
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.0 4.9e-06 0.0018 234 317 .. 14 91 .. 4 100 .. 0.81
2 ! 29.4 0.1 2.1e-10 7.8e-08 471 555 .. 460 550 .. 425 565 .. 0.82
3 ? -0.7 5.9 0.28 1e+02 106 195 .. 565 648 .. 549 664 .. 0.55
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 4.9e-06
TIGR00643 234 felTeaQkravkeileDlksdvpmnRLlqGdVGsGKTvVavlallaviesGyqvalmaPTeiLAeQhyeklrelleplgieval 317
+++ +Q++a++ + + + ++++ + l G G+GKT ++ + + ++ +q++++a LA Q y +l+e++++ +v++
MMSYN1_0825 14 YKPSGDQNQAIEKLNKGIIENKKHQ-VLLGATGTGKTFTIA--NI-IAKHNKQALVIAHNKTLAMQLYYELKEMFPEN--RVEY 91
89999************99998866.566********7543..33.3355689**********************985..5555 PP
== domain 2 score: 29.4 bits; conditional E-value: 2.1e-10
TIGR00643 471 alleelkkaf..pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGl....sqLHQLRGRvgRgek 555
++e+l++ + ++++va lh+ lk e+ e+l++ r++ d++v +++ G+d+P+++++ i da++ G L Q GRv+R+ +
MMSYN1_0825 460 RMSEDLTAFLqeKNIKVAYLHSELKTLERSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFlrnyRSLIQTIGRVARNVN 550
5667777766335677888****************************************************733334799********854 PP
== domain 3 score: -0.7 bits; conditional E-value: 0.28
TIGR00643 106 evksekaqeielkkilpvYplteglkskklrklvkealdvlaklledelpkelrekykllsleealkaiH.epetl.eekelarkrlifeel 195
++ ++++ ++ki+ +++++++++k+++k ++e + ++ +k+l + k+ ++++ l++i + +tl +e+ +a k+l fe +
MMSYN1_0825 565 DEAIKET--NRRRKIQEEFNKKHNITPKTISKAISESILS------EQTKKTLAKAKKIKDKKQKLQTIQqTIDTLrQEMLQAAKELDFERA 648
2333333..2457999999999999999999999987533......3344444444444444444444442222220223344455555444 PP
>> TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.7 0.1 0.00012 0.045 13 76 .. 20 82 .. 9 95 .. 0.75
2 ! 31.1 1.9 7.9e-11 2.9e-08 310 447 .. 470 617 .. 450 647 .. 0.80
Alignments for each domain:
== domain 1 score: 10.7 bits; conditional E-value: 0.00012
TIGR04095 13 qkeaikaW....fknngrGilkmatGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaek 76
q++ai++ ++n+ + +l atGtGkt t +++k +++ +v++ k L+ q + e+++
MMSYN1_0825 20 QNQAIEKLnkgiIENKKHQVLLGATGTGKTFTIANIIAKHNKQ-----ALVIAHNKTLAMQLYYELKE 82
7777766422225789999999**********99888887655.....45677778888888777765 PP
== domain 2 score: 31.1 bits; conditional E-value: 7.9e-11
TIGR04095 310 eelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasss.....nPrqFiqRRGRvLRkspGkeraeiyDfivvPp.. 400
+e +++v+ +e ++ eR+e+l+++ +g +++v + L eG+D+P++ iL + + n r iq GRv R+ Gk + D + +
MMSYN1_0825 470 QEKNIKVAYLHSELKTLERSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKqgflrNYRSLIQTIGRVARNVNGKAIMY-ADTVSQAMde 566
57789999999999*****************************************87643444499*****************6533.2444333322 PP
TIGR04095 401 ....keadeledkefeversllkrelkRvvefaelaenaaealskllelkk 447
++ ++ ++ef+ ++++ + ++++ + l+e ++++l k +++k+
MMSYN1_0825 567 aikeTNRRRKIQEEFNKKHNITPKTISKAISESILSEQTKKTLAKAKKIKD 617
222223333344678888888888888888888888888888888877776 PP
>> TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.3 0.0 1.8 6.7e+02 24 56 .. 32 65 .. 19 73 .. 0.64
2 ! 23.3 0.5 1.5e-08 5.8e-06 207 360 .. 429 587 .. 417 655 .. 0.72
Alignments for each domain:
== domain 1 score: -3.3 bits; conditional E-value: 1.8
TIGR00614 24 legr.dalvvmatGgGksLCyqlpavvsdgltlv 56
+e++ +++ atG Gk ++ +lv
MMSYN1_0825 32 IENKkHQVLLGATGTGKTFTIANIIAKHNKQALV 65
4444478888999*99986544433344555555 PP
== domain 2 score: 23.3 bits; conditional E-value: 1.5e-08
TIGR00614 207 ekkskiledllkfiv.kefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihysl 303
+k+++ ++d+ + i+ ++ + + i l+ +++e+++a Lq+k+++ a h+ l++ +r+e+ ++ + +vvv G++ p+v v ++
MMSYN1_0825 429 RKTTNQIDDIINEIHlRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLERSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDA 526
6888999999887774556666669999****************************************9999****9999*************99988 PP
TIGR00614 304 pks.....iesYYqesGRaGRDglksecvlfyapaDvallrrllveekdekkreyklkllek 360
k+ s q +GR R+ ++ +++++ ++ a+ + + + ++ k +e +k+ +
MMSYN1_0825 527 DKQgflrnYRSLIQTIGRVARN-VNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNI 587
8754411156668999**9996.677777765555444444443334444444444444333 PP
>> TIGR01389 recQ: ATP-dependent DNA helicase RecQ
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.8 0.2 3.4e-08 1.3e-05 204 356 .. 427 584 .. 408 601 .. 0.81
Alignments for each domain:
== domain 1 score: 21.8 bits; conditional E-value: 3.4e-08
TIGR01389 204 svvkkenkkkqlleylkkere..ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihl 299
++ k++n+ ++++++++ ++ + i + + + e+l+++L++k+i+++ h+ l++ +R+e +++ + vvv + G+d ++v v l
MMSYN1_0825 427 EIRKTTNQIDDIINEIHLRKLqnERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLERSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCIL 524
67888999999999887766511555667788899************************************************************998 PP
TIGR01389 300 dlPk.....nlesyyqeaGRaGRDGlkaeaillyseaDlallkrlieeseasedrkqieskk 356
d k n s q GR R+ + ++y+ + + + + i+e++ + ++ +kk
MMSYN1_0825 525 DADKqgflrNYRSLIQTIGRVARNVNG--KAIMYADTVSQAMDEAIKETNRRRKIQEEFNKK 584
876522222556668999999997543..457899888899999999988777776655555 PP
>> TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.8 0.0 0.024 9 14 45 .. 16 52 .. 6 90 .. 0.69
2 ! 15.0 0.1 2.4e-06 0.00089 263 351 .. 460 553 .. 429 591 .. 0.78
Alignments for each domain:
== domain 1 score: 1.8 bits; conditional E-value: 0.024
TIGR04121 14 prafQkevleaa.....eegesglliapTGaGKTlav 45
p Q++++e++ e++++ +l +TG+GKT+++
MMSYN1_0825 16 PSGDQNQAIEKLnkgiiENKKHQVLLGATGTGKTFTI 52
555566666554111114568999999*******974 PP
== domain 2 score: 15.0 bits; conditional E-value: 2.4e-06
TIGR04121 263 llfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspk.....gvaRllQRiGRsnHrldeps 351
++ + L++ +e + ++a H+ l++ +R+++ + l++g +vv L G+D +v lv + + k + l+Q iGR + +++ ++
MMSYN1_0825 460 RMSEDLTAFLQEKNIKVAYLHSELKTLERSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKqgflrNYRSLIQTIGRVARNVNGKA 553
45567888999999*************************************************99998743332455699*****987776654 PP
>> TIGR03499 FlhF: flagellar biosynthesis protein FlhF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.4 0.2 4.2e-06 0.0016 188 221 .. 25 58 .. 19 65 .. 0.84
2 ? -1.9 0.1 1.7 6.3e+02 111 137 .. 257 283 .. 222 304 .. 0.52
3 ? 5.3 3.2 0.011 4.1 59 131 .. 570 643 .. 513 664 .. 0.46
Alignments for each domain:
== domain 1 score: 16.4 bits; conditional E-value: 4.2e-06
TIGR03499 188 kkeedeilekggviaLvGptGvGKTTTlAKLAar 221
+k ++ i e+++ +L+G tG GKT T+A + a+
MMSYN1_0825 25 EKLNKGIIENKKHQVLLGATGTGKTFTIANIIAK 58
677888999999*****************87655 PP
== domain 2 score: -1.9 bits; conditional E-value: 1.7
TIGR03499 111 eelrkelkalkellekqlselaleeed 137
++l+ +++++ l + l+el++e++
MMSYN1_0825 257 DKLKTICNNIRNELVQRLAELQSENKL 283
333333344444444444444332222 PP
== domain 3 score: 5.3 bits; conditional E-value: 0.011
TIGR03499 59 aaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae...eelrkelkalkellekqlsel 131
+++++++ +++ +++ + + ++ +++ +++ +e+++++ a++++ k++ + +++++ +++l++ + + ++el
MMSYN1_0825 570 ETNRRRKIQEEFNKKHNITPKTISKAISESILSEQTKKTLAKAKKIKDK--KqklQTIQQTIDTLRQEMLQAAKEL 643
1111111111111111111111111111111111111111111111111..1123444444444444444444433 PP
>> TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.8 0.0 3.2e-05 0.012 155 210 .. 12 66 .. 3 76 .. 0.81
2 ? -2.6 0.1 1.5 5.8e+02 12 52 .. 583 622 .. 574 643 .. 0.62
Alignments for each domain:
== domain 1 score: 12.8 bits; conditional E-value: 3.2e-05
TIGR03819 155 delvaagaiapevaelleaivaarlallvsGgtGsGkttLLsalLalvaedeRivl 210
+++ +g ++++++l + i++++ ++ G+tG+Gkt ++ ++a+ +++ +v+
MMSYN1_0825 12 TKYKPSGDQNQAIEKLNKGIIENKKHQVLLGATGTGKTFTIANIIAKHNKQA-LVI 66
556667788889999999**************************99866554.444 PP
== domain 2 score: -2.6 bits; conditional E-value: 1.5
TIGR03819 12 esaeltpaavaaavraeagrvlgdaevlealeelraelsga 52
+++++tp+++++a+ ++ +++ l+++++++++ + +
MMSYN1_0825 583 KKHNITPKTISKAISES-ILSEQTKKTLAKAKKIKDKKQKL 622
55668888888888874.33334444556666666655444 PP
>> TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.3 0.2 2.9e-05 0.011 154 191 .. 26 63 .. 5 75 .. 0.80
2 ? -2.4 0.0 0.8 3e+02 338 382 .. 236 279 .. 190 297 .. 0.49
3 ? -3.9 0.0 2.3 8.6e+02 414 441 .. 470 498 .. 428 503 .. 0.50
4 ? 5.1 1.8 0.0044 1.6 367 434 .. 566 637 .. 531 645 .. 0.76
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 2.9e-05
TIGR01447 154 kvavalalksnfslitGGPGTGKTttvarlllalikqs 191
k+ ++ +++ ++ G GTGKT+t+a +++ +kq+
MMSYN1_0825 26 KLNKGIIENKKHQVLLGATGTGKTFTIANIIAKHNKQA 63
455666777888999*****************999986 PP
== domain 2 score: -2.4 bits; conditional E-value: 0.8
TIGR01447 338 ktaepladnlvmLkkshRfkkksgigqLakainsgdaeavldalr 382
+ ++++ +++ +s+ ++ +++++ + i++ ++++ + +
MMSYN1_0825 236 SILDNITTVTIHPAQSYITPQD-KLKTICNNIRNELVQRLAELQS 279
3333333333333333333333.3333333333333333333222 PP
== domain 3 score: -3.9 bits; conditional E-value: 2.3
TIGR01447 414 kklaalee.......akeileafselrlLtalreG 441
+ e ++ l+++++ +L lr+G
MMSYN1_0825 470 Q------EknikvayLHSELKTLERSEILNDLRKG 498
1......1222222355666777777777777766 PP
== domain 4 score: 5.1 bits; conditional E-value: 0.0044
TIGR01447 367 kain....sgdaeavldalrsgeeieiefaeskedaikllknllvkyrtllkklaaleeakeileafselrl 434
+ai +++++ ++++++++ + i++a s++ + +++k++l k ++ + k ++l+ +++ ++++++ l
MMSYN1_0825 566 EAIKetnrRRKIQEEFNKKHNITPKTISKAISESILSEQTKKTLAKAKKIKDKKQKLQTIQQTIDTLRQEML 637
444433334555556669999999999999999999999999999999999999999999999999887554 PP
>> TIGR03021 pilP_fam: type IV pilus biogenesis protein PilP
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.3 0.1 0.00016 0.062 4 37 .. 271 304 .. 268 317 .. 0.89
2 ? -1.8 1.0 4.1 1.5e+03 11 36 .. 604 628 .. 567 644 .. 0.59
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 0.00016
TIGR03021 4 vgeLealqsetalleAklarakakkeleeaeekg 37
v++L++lqse+ lleA+ ++++k +le++ee g
MMSYN1_0825 271 VQRLAELQSENKLLEAQRLEQRTKYDLESLEEFG 304
789*************************988755 PP
== domain 2 score: -1.8 bits; conditional E-value: 4.1
TIGR03021 11 qsetalleAklarakakkeleeaeek 36
q++ +l +Ak + k++l++ +++
MMSYN1_0825 604 QTKKTLAKAKKIKD-KKQKLQTIQQT 628
33444444443222.23334444443 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (665 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 711 (0.158422); expected 89.8 (0.02)
Passed bias filter: 185 (0.041221); expected 89.8 (0.02)
Passed Vit filter: 20 (0.00445633); expected 4.5 (0.001)
Passed Fwd filter: 12 (0.0026738); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 12 [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.26
# Mc/sec: 3672.96
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0825 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0826 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0826.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0826/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0826 [L=316]
Description: yqeN 4=Probable DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-26 91.8 11.8 1.4e-26 91.5 11.8 1.0 1 TIGR01128 holA: DNA polymerase III, delta subunit
Domain annotation for each model (and alignments):
>> TIGR01128 holA: DNA polymerase III, delta subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 91.5 11.8 3e-30 1.4e-26 4 275 .. 1 278 [. 1 291 [. 0.92
Alignments for each domain:
== domain 1 score: 91.5 bits; conditional E-value: 3e-30
TIGR01128 4 vyllyGeepllleeakdairkaalaqgfdefnviridgeeldweqlleeaqtlplFserrlvvvknpekktgakg.......lkaLeeylenpppdtl 94
+y++y e+ +ll+ + ++ +k +++++ +v+++ e d +++++++ +l++Fs++ ++v+ ++++ t k l++Le +l+n +p +
MMSYN1_0826 1 MYFFYSEDIFLLNNQIKKTIKELQQKDQY--DVLSFSLIEDDFNTIYDNVTNLNFFSSKSIIVISDAYFVTEIKTnfnknysLNKLEIMLKNFNPNNV 96
699*****999986555555555544433..57777777778***************************8876669********************** PP
TIGR01128 95 llieap..kldkrkkktkwlk.nakvvecktpkeeelpkwiqarlkelglkidneavqlLaelvegnllaiaqeLekLallapdgkitledveeavsd 189
++++++ k++k++k +k+ + n +v + ++e++ k+i ++lk++++ id ++ +l+ ++l++i +e +kLa l+++ ++ + ++ +++
MMSYN1_0826 97 IIFTLNsnKFSKKLKIAKYIEsNFNVKYLSLWDEKQTIKYIIDYLKSKNKIIDINLANQIYNLLPNDLQIITNETNKLANLKSE--LNRDIIKTNLNK 192
*******************************************************************************99865..6699******** PP
TIGR01128 190 sarfnvfdlvdailegkaaralrilkgLlkegeepliLlalltrqlrlllqlkrlaqkggslaqlasklgiwpyrrklalkalrrl 275
+++f+lvda +++++++++++++ + + + L++ll ++l + +l+++ +s++q+ l+ + yr kla++ + +
MMSYN1_0826 193 YHNEDIFKLVDAFINNNIDKFIKLYHDYILLNDDIIGLISLLDTNLSFYRDVVILKNQFKSEEQISTILKSHIYRIKLAINNSYDI 278
********************************999***********************99*******************9988766 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (316 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 414 (0.092246); expected 89.8 (0.02)
Passed bias filter: 67 (0.0149287); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 2160.90
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0826 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0827 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0827.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0827/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0827 [L=488]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (488 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 634 (0.141266); expected 89.8 (0.02)
Passed bias filter: 111 (0.0247326); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.20
# Mc/sec: 3503.94
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0827 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0830 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0830.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0830/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0830 [L=86]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.0011 16.7 13.4 0.0014 16.4 13.4 1.2 1 TIGR01218 Gpos_tandem_5TM: tandem five-TM protein
0.0012 16.1 2.3 0.0012 16.1 2.3 1.4 2 TIGR01478 STEVOR: variant surface antigen, stevor family
0.0063 13.9 0.7 0.0077 13.6 0.5 1.2 1 TIGR03943 TIGR03943: TIGR03943 family protein
------ inclusion threshold ------
0.013 13.0 2.2 0.014 13.0 2.2 1.0 1 TIGR02866 CoxB: cytochrome c oxidase, subunit II
0.044 11.0 5.1 0.05 10.9 5.1 1.1 1 TIGR01432 QOXA: cytochrome aa3 quinol oxidase, subunit II
Domain annotation for each model (and alignments):
>> TIGR01218 Gpos_tandem_5TM: tandem five-TM protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.4 13.4 1.6e-06 0.0014 95 166 .. 16 81 .. 7 86 .] 0.67
Alignments for each domain:
== domain 1 score: 16.4 bits; conditional E-value: 1.6e-06
TIGR01218 95 ilikiilflisillvlllrliiskkskkklynrlgnnkkkekiiirpksfkklifilflyifflglsillfy 166
+i i+++i+ +++++l+++++kk+k++ ++ + +n+ k+ +++ lifi++l fl ++l+f+
MMSYN1_0830 16 LIIVSIILFILAICSVILIIYLYKKKKRQNNQLVLKNNRKHSFWLLY-----LIFIIGLT-SFLSAILLMFL 81
57788888888889989999999998877777655777777777766.....66666663.33333333333 PP
>> TIGR01478 STEVOR: variant surface antigen, stevor family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.1 2.3 1.3e-06 0.0012 271 299 .. 18 46 .. 6 56 .. 0.80
2 ? -3.3 0.4 1.1 9.8e+02 184 199 .. 67 83 .. 63 84 .. 0.53
Alignments for each domain:
== domain 1 score: 16.1 bits; conditional E-value: 1.3e-06
TIGR01478 271 iaalvLiilvvvliiLYiWlyrrRkkswk 299
i+ ++L il++ +iL i+ly+++k+ +
MMSYN1_0830 18 IVSIILFILAICSVILIIYLYKKKKRQNN 46
6778999*****************99755 PP
== domain 2 score: -3.3 bits; conditional E-value: 1.1
TIGR01478 184 vgtcalssvl.ltklGi 199
+g ++++s++ l lGi
MMSYN1_0830 67 IGLTSFLSAIlLMFLGI 83
45555555440445566 PP
>> TIGR03943 TIGR03943: TIGR03943 family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.6 0.5 8.6e-06 0.0077 17 71 .. 16 70 .. 7 77 .. 0.85
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 8.6e-06
TIGR03943 17 llaaavvllllalvqllrdvrekeeeaehhhehktklkrrlvylllllpillgll 71
l++ +++l++la+++++ ++ +++++++++ k++r + +ll+l +++gl+
MMSYN1_0830 16 LIIVSIILFILAICSVILIIYLYKKKKRQNNQLVLKNNRKHSFWLLYLIFIIGLT 70
6778899999999999999999999999999999999999999999999998886 PP
>> TIGR02866 CoxB: cytochrome c oxidase, subunit II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.0 2.2 1.5e-05 0.014 16 71 .. 16 75 .. 5 86 .] 0.57
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 1.5e-05
TIGR02866 16 llavavliallvaalliyvvfkfrkksdee....kpskisenrkleivwtvipviivvgl 71
l++v++++++l + +i++++ ++kk+ ++ ++ +++ +l +++++i+++ +++
MMSYN1_0830 16 LIIVSIILFILAICSVILIIYLYKKKKRQNnqlvLKNNRKHSFWLLYLIFIIGLTSFLSA 75
567788888888888888888888743333123333334455566666666664444433 PP
>> TIGR01432 QOXA: cytochrome aa3 quinol oxidase, subunit II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.9 5.1 5.6e-05 0.05 32 89 .. 16 67 .. 6 79 .. 0.58
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 5.6e-05
TIGR01432 32 lilysivfmlvivlvvlvlftillvkyrerkdnsayepelhgnailevvwtvipiliv 89
li++si +l +l++ +++l+ y ++k + +++ + +n+ +w++ i i+
MMSYN1_0830 16 LIIVSI------ILFILAICSVILIIYLYKKKKRQNNQLVLKNNRKHSFWLLYLIFII 67
344443......3344444444444444444444455666677777888887766665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (86 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 456 (0.101604); expected 89.8 (0.02)
Passed bias filter: 139 (0.0309715); expected 89.8 (0.02)
Passed Vit filter: 35 (0.00779857); expected 4.5 (0.001)
Passed Fwd filter: 7 (0.00155971); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 617.50
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0830 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0831 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0831.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0831/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0831 [L=344]
Description: prs 4=Probable Nucleotide salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.7e-107 354.4 0.9 1.1e-106 354.2 0.9 1.0 1 TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
6.1e-05 20.8 0.0 0.00011 20.0 0.0 1.5 1 TIGR00336 pyrE: orotate phosphoribosyltransferase
7.5e-05 20.4 0.0 0.00019 19.1 0.0 1.7 1 TIGR01091 upp: uracil phosphoribosyltransferase
0.0001 20.3 0.0 0.00082 17.3 0.0 2.3 2 TIGR00201 comF: comF family protein
0.00057 17.6 0.0 0.0014 16.4 0.0 1.7 1 TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
0.0027 15.3 0.0 0.0057 14.2 0.0 1.5 1 TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
0.0036 15.4 0.0 0.0074 14.4 0.0 1.5 1 TIGR01090 apt: adenine phosphoribosyltransferase
Domain annotation for each model (and alignments):
>> TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 354.2 0.9 1.7e-109 1.1e-106 3 308 .. 8 325 .. 6 326 .. 0.96
Alignments for each domain:
== domain 1 score: 354.2 bits; conditional E-value: 1.7e-109
TIGR01251 3 ilsgssskelaekvaknlglelgdvevkkFadgElyvrieesvrgkdvfiivqstsapvndalmellllidalkrasaksvtaviPyygYaRqdkkak 100
++ +s+s++la++v++ lg+e v++++FadgE+ v+ +svrgk++++i qsts+pvn++lmell++ida+kr sa+++++viPyygYaRqd+kak
MMSYN1_0831 8 VFGLSASQQLAKEVCHFLGVEQKVVKTTRFADGEILVESIDSVRGKEIYVI-QSTSMPVNENLMELLIAIDAFKRGSAEKINVVIPYYGYARQDRKAK 104
7899***********************************************.********************************************** PP
TIGR01251 101 srepisaklvaklleeaGadrvltvdlHseqiqgfFdvpvenlsaspklieelkkke......lknlvvvsPDkGaverakkv...akklglelaiie 189
+r+pi+aklva+ll++aGadrv+++d+Hs+q+ gfFd+p++n ++s++l++e+ +++ +++++vsPD G+++r++kv +++ +a+i
MMSYN1_0831 105 GRQPITAKLVADLLTKAGADRVIVFDIHSTQTMGFFDMPMDNFHTSQSLANEIVDTIirekfdPEKCILVSPDYGGLNRVHKVdsyTANMTNGIAVIG 202
*****************************************************9998898899999*************98872114566689***** PP
TIGR01251 190 KeRdskenevevtnllgdvegkdvvivDDiisTggTlvkaaelLkekGAkkvivaathgvfsgdAlerlaeag....veevivtntilv.eekklpkv 282
K+R+ + n++ev+ +lgd+eg++++i+DD+i+TggT++ +a++Lk +GAk+v++ a hg+f+g+A er+++a v++v+vtnt+++ +e++++ +
MMSYN1_0831 203 KRRP-EPNKAEVEFVLGDIEGRTCFIIDDMIDTGGTIISGAKALKANGAKDVYIFACHGLFNGPAKERMTQAIkegiVKNVVVTNTVEIpQERQFEGL 299
****.888**************************************************************9999999************999****** PP
TIGR01251 283 seisvapliaeaiarihenesvsslf 308
+ +svapl+a++i++ +e++s+++++
MMSYN1_0831 300 KIVSVAPLLANMIKESQEHHSLTEVY 325
**********************9987 PP
>> TIGR00336 pyrE: orotate phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.0 0.0 1.7e-07 0.00011 33 138 .. 149 252 .. 120 276 .. 0.83
Alignments for each domain:
== domain 1 score: 20.0 bits; conditional E-value: 1.7e-07
TIGR00336 33 tgkelanliaeliaalvkdel..efdviaGpalkgiPiaaavsvklakpegdiqllivRkeaKdhGeggkivGelkegkkvvvveDvittGtsileav 128
t ++l++e++ +++++++ e + p ++g + v + a+ +++i ++ R+ + + e + + G++ eg+ +++D+i tG+ i + +
MMSYN1_0831 149 TS---QSLANEIVDTIIREKFdpEKCILVSPDYGGLNRVHKVDSYTANMTNGIAVIGKRRPEPNKAEVEFVLGDI-EGRTCFIIDDMIDTGGTIISGA 242
34...4455556666666666336667899*******************99*********99999********97.7889****************** PP
TIGR00336 129 eaiqeagaev 138
+a++++ga+
MMSYN1_0831 243 KALKANGAKD 252
*******975 PP
>> TIGR01091 upp: uracil phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.1 0.0 3e-07 0.00019 95 156 .. 198 256 .. 144 264 .. 0.76
Alignments for each domain:
== domain 1 score: 19.1 bits; conditional E-value: 3e-07
TIGR01091 95 vglvglkRdeetlkievyysklpedieerevivlDPmlAtGgtvvealellkekgakkikvl 156
++++g kR e+ k+ev ++ die+r+ +++D m+ tGgt+++ ++lk++gak++ ++
MMSYN1_0831 198 IAVIG-KRRPEPNKAEVEFV--LGDIEGRTCFIIDDMIDTGGTIISGAKALKANGAKDVYIF 256
33444.56778888888885..5789999****************************98776 PP
>> TIGR00201 comF: comF family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.1 0.0 0.27 1.8e+02 168 186 .. 111 129 .. 70 133 .. 0.86
2 ! 17.3 0.0 1.3e-06 0.00082 138 186 .. 208 256 .. 182 259 .. 0.84
Alignments for each domain:
== domain 1 score: -0.1 bits; conditional E-value: 0.27
TIGR00201 168 laeiaklllklgaaevqvl 186
+ +a+ll k ga +v+v+
MMSYN1_0831 111 AKLVADLLTKAGADRVIVF 129
5678899999999999887 PP
== domain 2 score: 17.3 bits; conditional E-value: 1.3e-06
TIGR00201 138 nlenafklkvkevqgrkivlvDDvvttGatlaeiaklllklgaaevqvl 186
++ ++ + +++gr ++DD++ tG t+ ak l +ga++v +
MMSYN1_0831 208 PNKAEVEFVLGDIEGRTCFIIDDMIDTGGTIISGAKALKANGAKDVYIF 256
4455555566699********************************9877 PP
>> TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.4 0.0 2.1e-06 0.0014 81 119 .. 218 256 .. 191 260 .. 0.92
Alignments for each domain:
== domain 1 score: 16.4 bits; conditional E-value: 2.1e-06
TIGR01203 81 edikdkdvLlveDivdtgltlkellellkarkpkslkiv 119
di+++ ++++D++dtg t+ + lka+++k++ i
MMSYN1_0831 218 GDIEGRTCFIIDDMIDTGGTIISGAKALKANGAKDVYIF 256
69********************************99875 PP
>> TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.2 0.0 8.9e-06 0.0057 39 137 .. 148 254 .. 113 264 .. 0.75
Alignments for each domain:
== domain 1 score: 14.2 bits; conditional E-value: 8.9e-06
TIGR01367 39 klaeklgeelakkilkaklevd..vivsPalGGvilgyev....aralsvrsifaerengemklrrgfevk..pGekvvvveDvvttGgsakeaikii 128
++ + l++e+ i+ k +++ ++vsP GG+ ++v a + ++ r + k f + +G + +++D++ tGg++ +k++
MMSYN1_0831 148 HTSQSLANEIVDTIIREKFDPEkcILVSPDYGGLNRVHKVdsytANMTNGIAVIGKRRPEPNKAEVEFVLGdiEGRTCFIIDDMIDTGGTIISGAKAL 245
4566778888888888888887434799*****9887776211144555677788888888888888888533799********************** PP
TIGR01367 129 eelGgqvvg 137
+ G++ v
MMSYN1_0831 246 KANGAKDVY 254
****97654 PP
>> TIGR01090 apt: adenine phosphoribosyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.4 0.0 1.1e-05 0.0074 108 143 .. 221 256 .. 209 281 .. 0.82
Alignments for each domain:
== domain 1 score: 14.4 bits; conditional E-value: 1.1e-05
TIGR01090 108 kgkrvlivDDllAtgGtveAaleLikklgaevveaa 143
+g+ + i+DD++ tgGt+ ++ +k ga+ v +
MMSYN1_0831 221 EGRTCFIIDDMIDTGGTIISGAKALKANGAKDVYIF 256
57889******************9999998876655 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (344 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 212 (0.0472371); expected 89.8 (0.02)
Passed bias filter: 111 (0.0247326); expected 89.8 (0.02)
Passed Vit filter: 19 (0.00423351); expected 4.5 (0.001)
Passed Fwd filter: 7 (0.00155971); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.20
# Mc/sec: 2469.99
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0831 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0832 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0832.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0832/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0832 [L=186]
Description: pth: aminoacyl-tRNA hydrolase 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-57 191.7 4.2 2.5e-57 191.6 4.2 1.0 1 TIGR00447 pth: aminoacyl-tRNA hydrolase
Domain annotation for each model (and alignments):
>> TIGR00447 pth: aminoacyl-tRNA hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 191.6 4.2 5.6e-61 2.5e-57 1 187 [. 1 186 [] 1 186 [] 0.97
Alignments for each domain:
== domain 1 score: 191.6 bits; conditional E-value: 5.6e-61
TIGR00447 1 lklivGlgNpgkkYaeTRHNvGfalldkLasrlelslkeekkflgkkeallvkekkviLlkpttymNlSGeavkavvdfykikpeellvvhDeldlpl 98
+k+i+GlgN gk+Y++TRHN+Gf +d L ++++ s +++f+ +++++++kv+L+kp t+mN+SG av+++++fyki+ ++l+++hD+ dl++
MMSYN1_0832 1 MKVIIGLGNIGKEYEKTRHNAGFIAIDLLLEKYNYSSV-KQEFNSLIYTTMINNQKVLLVKPLTFMNNSGIAVRQIINFYKIDLNDLIIIHDDKDLNI 97
79**********************************99.78899****************************************************** PP
TIGR00447 99 GkvrlkekgsaggHNGlksiishlgteefarLriGigkengskkvkeavlskfskseedllekaldkaeealkaslsegellkalnkfn 187
++++k+ gs+ gHNG+ksii+ l+t++f+rLriG+++ ++ k+++ vlskfs +e +ll++++ + e +++ + ++ ++nk+n
MMSYN1_0832 98 SRIQFKKDGSSAGHNGIKSIINNLQTQNFYRLRIGVNQVPKEWKIVDWVLSKFSDEELNLLKQSFIDKIEFINDFTNNKTFIYLMNKYN 186
*************************************************************************9566666999999997 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (186 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 205 (0.0456774); expected 89.8 (0.02)
Passed bias filter: 79 (0.0176025); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1335.52
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0832 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0833 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0833.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0833/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0833 [L=147]
Description: L9: ribosomal protein L9 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.8e-37 125.4 11.9 6.4e-37 125.3 11.9 1.0 1 TIGR00158 L9: ribosomal protein bL9
Domain annotation for each model (and alignments):
>> TIGR00158 L9: ribosomal protein bL9
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.3 11.9 1.4e-40 6.4e-37 1 147 [. 1 146 [. 1 147 [] 0.97
Alignments for each domain:
== domain 1 score: 125.3 bits; conditional E-value: 1.4e-40
TIGR00158 1 mkviLkedvknlGkkgdvveVkdGyarnfLipkglavlatkknieklearrkkkeekeaaekaaaaklkevlelvtltiskksgdegklfgsittkei 98
mkvi+++dv n Gkk +++eV dGyarn+L+p++l ++at+++i++l+ ++k +e+++ +ka+ +++k++le +tl+++++++d +k+fgsi +++i
MMSYN1_0833 1 MKVIFLKDVPNQGKKNEIKEVSDGYARNYLLPNQLVKIATNNSIQTLKDHLKADQEEKELAKAQTKQIKKTLEELTLHFKLQTND-DKVFGSISSQDI 97
9************************************************************************************.************ PP
TIGR00158 99 adavkk.aglkldkke.ielkdgviktlGeyevelklheevvavlkvevka 147
++++k +++++dkk+ i++k+ i ++G+ v++kl ++ a++k++vk+
MMSYN1_0833 98 VNQLKDvHRIEIDKKKfIHFKN--INKIGINYVKVKLDFGIEAIIKIDVKE 146
**************99346666..9************************86 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (147 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 570 (0.127005); expected 89.8 (0.02)
Passed bias filter: 130 (0.0289661); expected 89.8 (0.02)
Passed Vit filter: 10 (0.00222816); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1111.04
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0833 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0834 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0834.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0834/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0834 [L=438]
Description: dnaC 5=Equivalog DNA replication
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-143 476.7 6.2 1.7e-143 476.5 6.2 1.0 1 TIGR00665 DnaB: replicative DNA helicase
2.5e-106 354.1 3.9 3.1e-106 353.8 3.9 1.0 1 TIGR03600 phage_DnaB: phage replicative helicase, DnaB famil
3.9e-05 20.5 0.1 0.00065 16.5 0.1 2.1 1 TIGR00416 sms: DNA repair protein RadA
------ inclusion threshold ------
0.011 13.0 3.2 0.15 9.3 1.0 2.7 2 TIGR03878 thermo_KaiC_2: KaiC domain protein, AF_0795 family
Domain annotation for each model (and alignments):
>> TIGR00665 DnaB: replicative DNA helicase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 476.5 6.2 1.5e-146 1.7e-143 6 432 .. 11 437 .. 6 438 .] 0.98
Alignments for each domain:
== domain 1 score: 476.5 bits; conditional E-value: 1.5e-146
TIGR00665 6 ieaeeaiLggilldpealervvevlkpeaFyveahrliyeailelhaqgkptdlltvseelednkklekiggreylaeLldatisavnieayaelvke 103
+ ae+ +Lg + ++al+++v+vlk+++F ++a++ iy+ai++l++++k++ ++v + le +kle++gg + e+++++ + +e+y++++++
MMSYN1_0834 11 LYAERFVLGVAMSFSNALADIVSVLKVDDFSIPANKYIYQAIIDLNNKNKSISPISVINRLEAINKLEQVGGDVVVYEIAAENYTDQGLEEYIDIIHK 108
579*********************************************************************************************** PP
TIGR00665 104 kallrqLikagkeivelgyesekeleelldeaeqklfevtqerkqkglvsisevlkntfeeleelkekksevtGiptgfydLDkltsGlqrsdLiivA 201
+ + r+L + ke+ + +s+++++ell+ a++kl+++ + k+ ++++i ev+k+++e+++el+ k + ++G+ptg++ LD +tsG+q+sd+ii+A
MMSYN1_0834 109 AGVIRKLDIVIKELEIKRNNSNTDVDELLKVAQTKLLDIDLSIKRFEIEPIGEVAKRVVEKIKELEMKAEIISGVPTGYNYLDLVTSGWQESDFIILA 206
*********************************************************************99*************************** PP
TIGR00665 202 gRPsmGKtafalniaeniakkeklpvavFSLEmskeqLvqrllaseaeveserlrtgr.lseeeweklseaigelselplyiddtpnitvtelrskar 298
+RPs+GKtaf+ln+a n+a+ +k pva+FSLEm++eqL+qrl++ ++v+s++lrtg+ ls+++wek++ a ++l+e+p+yid tp+i+ +e+rsk+
MMSYN1_0834 207 ARPSVGKTAFSLNLAFNAAM-QKYPVAFFSLEMPAEQLTQRLFTRLTSVDSTNLRTGKgLSKQNWEKIQIAKEKLEEIPIYIDATPGISTQEIRSKLY 303
*****************999.6789*********************************9*************************************** PP
TIGR00665 299 rLkaekgelglvviDYLqLmegsgsednRvqelskisrsLKgLArelnvPviALsQLsRsvEaRtdkrPmlsDLReSGsiEQDADlvlflyrdeyynk 396
++k++++ ++l+viDYLqL+ gs+++ +R++e+s+isr+LK++Are ++P+i+LsQLsR+ E+R+dkrPmlsDLR+SG+iEQDAD+v+flyrd+yy+k
MMSYN1_0834 304 KMKRDHN-IKLCVIDYLQLIVGSQNK-DRQNEVSEISRQLKQIARETSIPIICLSQLSRRAETREDKRPMLSDLRDSGAIEQDADIVAFLYRDDYYKK 399
*******.***************966.*********************************************************************** PP
TIGR00665 397 d..sedkgiaeviiaKhRnGptgtvkllFekeftkFkn 432
d + dk+++e+i+aKhRnG+tgtv l F k+f F++
MMSYN1_0834 400 DltDLDKEKTELILAKHRNGATGTVLLRFIKDFGVFRD 437
976678999************************99976 PP
>> TIGR03600 phage_DnaB: phage replicative helicase, DnaB family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 353.8 3.9 2.8e-109 3.1e-106 4 421 .] 13 428 .. 11 428 .. 0.96
Alignments for each domain:
== domain 1 score: 353.8 bits; conditional E-value: 2.8e-109
TIGR03600 4 aEqavlGgllldnkalekvlailkpehFydakhkiifeaildlykenkpvDlvtladkleakseaekvgglaylaelakntvSaanissyarivreka 101
aE+ vlG + ++al+ ++ +lk+++F+ +++k i++ai+dl ++nk++ +++++++lea ++e+vgg + + e+a + + +++y+ i++ +
MMSYN1_0834 13 AERFVLGVAMSFSNALADIVSVLKVDDFSIPANKYIYQAIIDLNNKNKSISPISVINRLEAINKLEQVGGDVVVYEIAAENYTDQGLEEYIDIIHKAG 110
99************************************************************************************************ PP
TIGR03600 102 veRellaacqeiiellvskegkkaeekveeaqaalleltgksdgqedelvtlsevledvvrslekrfekkgelaGlstGlssLDrltnGLvkgdlivi 199
v R+l +e + + ++ +++++e ++ aq ll + + ++ e+ +++ev + vv+++++ k+ ++G++tG++ LD +t+G +++d+i++
MMSYN1_0834 111 VIRKLDIVIKELE-IKRNNSNTDVDELLKVAQTKLLDID--LSIKRFEIEPIGEVAKRVVEKIKELEMKAEIISGVPTGYNYLDLVTSGWQESDFIIL 205
*****99999988.666777779****************..55666679****************9999999************************** PP
TIGR03600 200 gaRPsmGKTtlalniaenvalkegkavlvfslemsaeqlaerllasksgietrklktgr.lndsdinklleavdrlseldlviddkaglsvaqlrsra 296
+aRPs GKT+ +ln+a n a ++ +v +fslem+aeql++rl ++ ++++ ++l+tg+ l++++++k++ a ++l+e++++id ++g+s +++rs+
MMSYN1_0834 206 AARPSVGKTAFSLNLAFNAA-MQKYPVAFFSLEMPAEQLTQRLFTRLTSVDSTNLRTGKgLSKQNWEKIQIAKEKLEEIPIYIDATPGISTQEIRSKL 302
*******************9.78899********************************9456777********************************* PP
TIGR03600 297 rrikrkkkgldlivvDylqlmaasekrdrneelgeisrelKalAkELdvpvvvlaQLnRalekrtdkrPilsDlRdsGaiEqDadvillihRegyyda 394
++kr + + l v+Dylql+ +s+++dr++e++eisr+lK +A+E +p++ l+QL+R e+r+dkrP+lsDlRdsGaiEqDad++ +++R++yy++
MMSYN1_0834 303 YKMKRDH-NIKLCVIDYLQLIVGSQNKDRQNEVSEISRQLKQIARETSIPIICLSQLSRRAETREDKRPMLSDLRDSGAIEQDADIVAFLYRDDYYKK 399
*****99.9***************************************************************************************99 PP
TIGR03600 395 keasa..gvaelilaknRhgptGtvkllf 421
+ +elilak+R+g tGtv l f
MMSYN1_0834 400 DLTDLdkEKTELILAKHRNGATGTVLLRF 428
8776445788***************9876 PP
>> TIGR00416 sms: DNA repair protein RadA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.5 0.1 5.8e-07 0.00065 68 189 .. 175 300 .. 151 363 .. 0.76
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 5.8e-07
TIGR00416 68 ieleeeprfssglseldrvlGGGivkGsliliGGdPGiGkstlllqvaaqlaknskkvlyvsgeeslqqvklra.srlg.lvedelkl...lsetnle 160
++ e + + +g++ ld v G + i++ P +Gk+++ l+ a++ a ++ v + s e +q+ r +rl + + +l ls n+e
MMSYN1_0834 175 MKAEIISGVPTGYNYLDLVTS-GWQESDFIILAARPSVGKTAFSLNLAFNAAMQKYPVAFFSLEMPAEQLTQRLfTRLTsVDSTNLRTgkgLSKQNWE 271
344445568899999999976.56788889999************************************99995489984444555433337888888 PP
TIGR00416 161 qilaeieelkpkvvvidsiqtlyladiss 189
+i+ + e+l+ + id+ + + +i s
MMSYN1_0834 272 KIQIAKEKLEEIPIYIDATPGISTQEIRS 300
88888888887777777776666666665 PP
>> TIGR03878 thermo_KaiC_2: KaiC domain protein, AF_0795 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.6 0.0 0.28 3.2e+02 99 141 .. 142 184 .. 116 196 .. 0.69
2 ? 9.3 1.0 0.00013 0.15 42 144 .. 206 323 .. 195 369 .. 0.56
Alignments for each domain:
== domain 1 score: -1.6 bits; conditional E-value: 0.28
TIGR03878 99 eniilidaasstelrenveellatlaevikkykvkatvidsit 141
+++ id++ + e + e+ +++ e ik+ ++ka +i +
MMSYN1_0834 142 TKLLDIDLSIKRFEIEPIGEVAKRVVEKIKELEMKAEIISGVP 184
4555566666665567788888888888888888888887774 PP
== domain 2 score: 9.3 bits; conditional E-value: 0.00013
TIGR03878 42 tGvsdtGksllveqfavkqaskGekvlfvtvesPaefvaaslklraeal.........g..........vdkekieeniilidaasstelrenveell 120
+ + Gk+ ++ a + a + ++v+f + e Pae +++ l +r +++ g + kek+ee i ida+ + +e+
MMSYN1_0834 206 AARPSVGKTAFSLNLAFNAAMQKYPVAFFSLEMPAEQLTQRLFTRLTSVdstnlrtgkGlskqnwekiqIAKEKLEEIPIYIDATPG----ISTQEIR 299
5567789999999***********************999999888665411111111110000000000222222222222333222....2345566 PP
TIGR03878 121 atlaevikkykvkatvidsitGly 144
++l ++ +++++k +vid + +
MMSYN1_0834 300 SKLYKMKRDHNIKLCVIDYLQLIV 323
667777777777777777655444 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (438 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 231 (0.0514706); expected 89.8 (0.02)
Passed bias filter: 114 (0.0254011); expected 89.8 (0.02)
Passed Vit filter: 13 (0.00289661); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.22
# Mc/sec: 2859.03
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0834 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0835 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0835.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0835/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0835 [L=435]
Description: lipoprotein, putative 1=Unknown Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (435 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 236 (0.0525847); expected 89.8 (0.02)
Passed bias filter: 71 (0.01582); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 2974.66
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0835 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0836 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0836.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0836/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0836 [L=308]
Description: ecfS 2=Generic Cofactor transport and salvage
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-13 48.0 42.8 2.6e-12 44.8 17.0 3.0 3 TIGR04518 ECF_S_folT_fam: ECF transporter S component, folat
0.00027 18.7 10.2 0.00027 18.7 10.2 4.0 6 TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication
------ inclusion threshold ------
0.34 8.4 18.1 0.1 10.1 0.3 3.4 4 TIGR02866 CoxB: cytochrome c oxidase, subunit II
Domain annotation for each model (and alignments):
>> TIGR04518 ECF_S_folT_fam: ECF transporter S component, folate family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.2 0.1 0.044 65 5 22 .. 12 29 .. 9 40 .. 0.80
2 ! 44.8 17.0 1.7e-15 2.6e-12 1 117 [. 53 173 .. 53 197 .. 0.86
3 ! 10.6 13.6 5.7e-05 0.085 69 160 .. 197 300 .. 187 303 .. 0.75
Alignments for each domain:
== domain 1 score: 1.2 bits; conditional E-value: 0.044
TIGR04518 5 ksLtllalliaLsiiLkr 22
++L++++l i Ls+iL +
MMSYN1_0836 12 HNLAITSLCITLSAILIY 29
789999999999999965 PP
== domain 2 score: 44.8 bits; conditional E-value: 1.7e-15
TIGR04518 1 ksdvksLtllalliaLsiiLkrl....lslqtf.slrisievipvllagiilGpvagaivglaaDlvgliltptgfpflgftlsavlqglipglvyyk 93
k++++++t la+++ +s+ + + l+++++ +r+ +e +++ + g+i+Gp +g++vgl+++l+ l+++p+ + ++ + + a+ g+ g+ y
MMSYN1_0836 53 KFSTRKITYLAMMVGVSVATTTVisltLPITVLpPIRVAFEGVMIKITGMIFGPFVGLVVGLVTELLTLMFVPSYI-HVAYLVVAFSFGFWSGMTSYA 149
789**************998888777788899999*****************************************.888*****************9 PP
TIGR04518 94 kkkekklfllllisvvlvevvitl 117
k +k++++l+++ v+l + + +
MMSYN1_0836 150 FKLKKNWLTLVFVTVFLLIAAGIM 173
976666666666666655444444 PP
== domain 3 score: 10.6 bits; conditional E-value: 5.7e-05
TIGR04518 69 tgfpflgftlsavlqglipglvyykkk.kekklfll...llisvvlvevvitlvltpl......wLqvlygi..pltlllaiRvikeiimipvdiili 154
+ pfl+ ++ ++++ +i+glv+ k++k++++ +++ +v++e+++t+++ L+ g+ p+++++ +R+i+ i i+++++++
MMSYN1_0836 197 DIYPFLFLIMISITLIFIYGLVLVLHIkKREKWLNVvlpIILLCVISEILVTVLVAAWgdyqmfGLRNSSGSenPFITMVVVRIIQIPIKIFFNTAIL 294
567899999************977654234444433111456667777777777777699999988877664338999*******************9 PP
TIGR04518 155 ylllkv 160
+++ v
MMSYN1_0836 295 TTVYIV 300
998766 PP
>> TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.8 0.0 0.79 1.2e+03 82 101 .. 15 34 .. 10 41 .. 0.56
2 ? -0.6 0.3 0.17 2.5e+02 28 47 .. 63 82 .. 46 101 .. 0.63
3 ! 18.7 10.2 1.8e-07 0.00027 22 113 .. 100 192 .. 82 196 .. 0.87
4 ? -0.3 0.6 0.13 1.9e+02 78 100 .. 201 223 .. 193 234 .. 0.59
5 ? 1.7 0.5 0.033 49 74 105 .. 227 258 .. 221 262 .. 0.78
6 ? -2.2 0.2 0.51 7.6e+02 11 34 .. 274 297 .. 272 303 .. 0.64
Alignments for each domain:
== domain 1 score: -2.8 bits; conditional E-value: 0.79
TIGR03082 82 litvlllllalllalllarl 101
+it l++ l+++l + + rl
MMSYN1_0836 15 AITSLCITLSAILIYSIFRL 34
45555555555555555444 PP
== domain 2 score: -0.6 bits; conditional E-value: 0.17
TIGR03082 28 pllaaavlslaggleielpr 47
++++++ ++ ++ ++++lp
MMSYN1_0836 63 AMMVGVSVATTTVISLTLPI 82
44444444444455555544 PP
== domain 3 score: 18.7 bits; conditional E-value: 1.8e-07
TIGR03082 22 aawllgpllaaavlslaggleielprwllalaqvllGiliGlrftrevlk.elkrllpaallitvlllllalllalllarlsgvdlltallat 113
+++++gp + +v ++ l++ + + ++a++++ + G ++ + +lk+++++ +++tv+ll++a ++ +l++ + +++++t+l+++
MMSYN1_0836 100 TGMIFGPFVGLVVGLVTELLTLMFVPSYIHVAYLVVAFSFGFWSGMTSYAfKLKKNWLTLVFVTVFLLIAAGIMFWLMQGMKQINPETSLFGI 192
57899999988888888999999988899************7665555442599************************************985 PP
== domain 4 score: -0.3 bits; conditional E-value: 0.13
TIGR03082 78 paallitvlllllalllalllar 100
+++l+++ ++l++ +l+l+l+
MMSYN1_0836 201 FLFLIMISITLIFIYGLVLVLHI 223
45555666666666666665554 PP
== domain 5 score: 1.7 bits; conditional E-value: 0.033
TIGR03082 74 krllpaallitvlllllalllalllarlsgvd 105
++l ++l i++l++++ +l+ +l+a++ +++
MMSYN1_0836 227 EKWLNVVLPIILLCVISEILVTVLVAAWGDYQ 258
57788888889999999999999999988776 PP
== domain 6 score: -2.2 bits; conditional E-value: 0.51
TIGR03082 11 gglllsllglPaawllgpllaaav 34
+ ++++ +++P + ++ + ++++v
MMSYN1_0836 274 TMVVVRIIQIPIKIFFNTAILTTV 297
456667777777777766666555 PP
>> TIGR02866 CoxB: cytochrome c oxidase, subunit II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.1 0.3 6.7e-05 0.1 21 95 .. 17 91 .. 8 105 .. 0.77
2 ? 2.4 0.8 0.016 24 45 82 .. 147 183 .. 110 202 .. 0.59
3 ? 0.7 3.5 0.05 75 11 59 .. 154 199 .. 145 232 .. 0.52
4 ? 6.8 0.8 0.00068 1 9 67 .. 233 294 .. 225 306 .. 0.62
Alignments for each domain:
== domain 1 score: 10.1 bits; conditional E-value: 6.7e-05
TIGR02866 21 vliallvaalliyvvfkfrkksdeekpskisenrkleivwtvip.viivvgliaatvaellkleksidkedalkvk 95
+ +++++ a+liy++f+ + ++ s + ++k++++ i+ + ++vg+++at++ +++l+ +i + +++v+
MMSYN1_0836 17 TSLCITLSAILIYSIFRLARARFKNYGSGFHISNKVKFSTRKITyLAMMVGVSVATTT-VISLTLPITVLPPIRVA 91
5689999***********9988888899999999999998877768999999988876.55665555544555554 PP
== domain 2 score: 2.4 bits; conditional E-value: 0.016
TIGR02866 45 ekpskisenrkleivwtvipviivvgliaatvaellkl 82
+ + k ++++l++v++ + ++i +g++ + ++++ ++
MMSYN1_0836 147 SYAFKL-KKNWLTLVFVTVFLLIAAGIMFWLMQGMKQI 183
334443.4445555544444566666666666655555 PP
== domain 3 score: 0.7 bits; conditional E-value: 0.05
TIGR02866 11 klyllllavavliallvaalliyvvfkfrkksdeekpskisenrkleiv 59
k+ +l++v v+++ll+aa +++ +++ k+ + ++s + i
MMSYN1_0836 154 KN--WLTLVFVTVFLLIAAGIMFWLMQGMKQ-INPETSLFGIKIPADIY 199
44..788888999999999998888776653.22222222222222222 PP
== domain 4 score: 6.8 bits; conditional E-value: 0.00068
TIGR02866 9 iaklyllllavavliallvaalliyvvfkfrkksdee..kpski.senrkleivwtvipvii 67
+ +ll+++ +l+++lvaa y +f r++s e ++++ ++ i +++ ++i+
MMSYN1_0836 233 VLPIILLCVISEILVTVLVAAWGDYQMFGLRNSSGSEnpFITMVvVRIIQIPIKIFFNTAIL 294
4455667788899*******************544441233333023334445555555333 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (308 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 387 (0.0862299); expected 89.8 (0.02)
Passed bias filter: 85 (0.0189394); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 2010.46
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0836 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0837 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0837.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0837/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0837 [L=441]
Description: cysRS 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.2e-130 431.9 21.6 9.2e-130 431.7 21.6 1.0 1 TIGR00435 cysS: cysteine--tRNA ligase
1e-57 193.7 0.0 1.3e-57 193.4 0.0 1.1 1 TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino
2.8e-17 60.6 6.3 4.2e-09 33.6 3.1 2.4 2 TIGR00398 metG: methionine--tRNA ligase
1.6e-09 34.2 2.2 1.3e-05 21.4 2.6 2.3 2 TIGR00422 valS: valine--tRNA ligase
2.4e-07 27.3 4.8 2.9e-07 27.0 3.4 1.7 2 TIGR00392 ileS: isoleucine--tRNA ligase
1.1e-06 24.9 0.5 2.5e-06 23.7 0.3 1.6 2 TIGR00395 leuS_arch: leucine--tRNA ligase
0.00022 17.8 0.9 0.0006 16.4 0.9 1.7 1 TIGR00463 gltX_arch: glutamate--tRNA ligase
------ inclusion threshold ------
0.045 9.0 0.6 0.064 8.5 0.6 1.1 1 TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synth
Domain annotation for each model (and alignments):
>> TIGR00435 cysS: cysteine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 431.7 21.6 1.6e-132 9.2e-130 1 452 [. 1 440 [. 1 441 [] 0.92
Alignments for each domain:
== domain 1 score: 431.7 bits; conditional E-value: 1.6e-132
TIGR00435 1 lklyntltrqkeefeplsenkvkiYvCGpTvYdasHlGhaRtlvvfDvlrrilqylgYdvqyvqNiTDidDKiikrAreeelteeevserfieayled 98
++ly++l++ k+ +l+++++++Y+CGpTvY+++H+G+aR+++ +Dvl r+l+ + +v+y qNiTDidDKii +A +++l+e evs+++++ayled
MMSYN1_0837 1 MQLYDSLSKTKK---NLNKKTINLYCCGPTVYNYIHIGNARPVLLVDVLIRYLKSRNIKVNYLQNITDIDDKIILKALDNNLNELEVSQKYTTAYLED 95
79******9998...89999****************************************************************************** PP
TIGR00435 99 leaLnvlkpdlelrvsekideiielvekliekgyaYvssdgdvyfdvskfk.dYgklskqqldeleagerskvneadknklDFvLWkaskegevkweS 195
l++Ln+ +pd+ + +s+k++e+i+++++l++ + aYv + gdvyfd++k++ +Y kls +ldel +g+r++++ +++ +lDF LWk++ g +kw+S
MMSYN1_0837 96 LKSLNINQPDKIILISQKMNEMIDFIKNLVDINAAYVLD-GDVYFDIKKYEnEYCKLSGYKLDELISGKRIEIDSKKHYSLDFSLWKKTDIG-IKWNS 191
**************************************9.*********9989***********************************9999.***** PP
TIGR00435 196 pwGkGrPgWHiECsvmaseilg.eeldiHsGGvDlifpHHeNEiaqsealfdkqlvkyflHngflkiegeKmSKSlgNfitikdllkkfdpralRlll 292
+G GrPgWH EC +++e+++ +++diH+GG+Dl+fpHHeNE q a +k+l++++lHng+l+i+ eKmSKSlgN+i+++d+ k+++ ++lR+++
MMSYN1_0837 192 VFGLGRPGWHTECVLLIDEYFNhQTIDIHVGGIDLKFPHHENERIQFIAKNNKELAHIWLHNGHLQINDEKMSKSLGNVILVRDFNKQHNKNTLRWIF 289
*********************8567************************************************************************* PP
TIGR00435 293 lsvhyrnqldfseelleeaknalerlakalralkedlasakeiskkksplekefeaefvEaldddlntaealavlselvkksnlkeiskakaalliee 390
l+++y ++l+ s++l+ +a++ +e+l++ +++ + + +++ +s + e+ ++f+E ++ddlnt+ l+++ l+k++n k+i +++++
MMSYN1_0837 290 LTTNYTQPLNISDDLIYQANKFFEKLTNLSKKTIQFIIKNDLKI--QSINSSEYINKFNEYMEDDLNTSLVLSLIDLLIKQIN-KDIVDKNLDNFNLL 384
************************99998887776666443322..334568*******************************.77777777776666 PP
TIGR00435 391 lialesvlekllglpsksvqagsnddelgeledlieersearkkkelkkaDkiRdellkkgi 452
+ +l+ +l+ l g+++ + + +++ ++l +++e+ k+ke++kaD iR++l+++gi
MMSYN1_0837 385 IGSLNYILDVL-GFNNVFNYK-----FDNKTKELFLKWQELVKNKEFNKADIIRNKLIEQGI 440
66666655555.776643333.....2346789999***********************998 PP
>> TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 193.4 0.0 2.3e-60 1.3e-57 19 393 .. 2 377 .. 1 395 [. 0.85
Alignments for each domain:
== domain 1 score: 193.4 bits; conditional E-value: 2.3e-60
TIGR03447 19 rlfdtadqevkeveaeaeaslyvcGitPydathlGhaatylafdlvnrvlldaghkvhyvqnvtdvddPlleraerdGvdwrelgeseidlfredmea 116
+l+d+ +++ k+++++ + +ly cG t y+ h+G a l d++ r+l+ + kv+y qn+td+dd ++ +a + + e++++ + + ed+++
MMSYN1_0837 2 QLYDSLSKTKKNLNKK-TINLYCCGPTVYNYIHIGNARPVLLVDVLIRYLKSRNIKVNYLQNITDIDDKIILKALDNNLNELEVSQKYTTAYLEDLKS 98
79***99999999865.789****************************************************************************** PP
TIGR03447 117 lrvlpPrdyigavesidevvelvekllaeGaayevedeeypdvyasveatek.fGyeskldratmeelfaerGGdPdraGkkdpldallwraareGeP 213
l++ P++ i + ++e+++++++l++ aay++++ dvy+++++ e+ + + s+++ ++el + + + d k+ +ld lw+ + G
MMSYN1_0837 99 LNINQPDKIILISQKMNEMIDFIKNLVDINAAYVLDG----DVYFDIKKYENeYCKLSGYK---LDELISGKRIEIDS-KKHYSLDFSLWKKTDIG-I 187
************************************9....******98764377777775...66677665555553.46779*******99888.6 PP
TIGR03447 214 swdsplGaGrPGwhiecsaialkrlga.efdiqGGGsdlifPhhefsaahaeaatgeerlarhyvhagmigldGekmskskGnlvlvsklraaGeePa 310
+w+s +G GrPGwh ec+ + +++ + ++di+ GG dl fPhhe + a + ++ la+ ++h g + ++ ekmsks+Gn++lv ++++ ++
MMSYN1_0837 188 KWNSVFGLGRPGWHTECVLLIDEYFNHqTIDIHVGGIDLKFPHHENERIQFIAKN-NKELAHIWLHNGHLQINDEKMSKSLGNVILVRDFNKQ-HNKN 283
9******************99999986269***************9988877655.559*****************************99887.6778 PP
TIGR03447 311 airlavlaghyredrewtdevlaeaeerlarw....raala.......aeeaeeaaelvaklreeladdldtpaalaavdewaaeakkeagsds 393
++r l+ y + + +d+ + +a++ ++ +++++ + ++ +++e ++k+ e + ddl+t+ +l+ +d ++++k+ +++
MMSYN1_0837 284 TLRWIFLTTNYTQPLNISDDLIYQANKFFEKLtnlsKKTIQfiikndlKIQSINSSEYINKFNEYMEDDLNTSLVLSLIDLLIKQINKDIVDKN 377
9***********************9976554411112333332111112234467789***********************9999888765554 PP
>> TIGR00398 metG: methionine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.4 0.0 5.6e-10 3.2e-07 12 84 .. 30 102 .. 23 129 .. 0.94
2 ! 33.6 3.1 7.6e-12 4.2e-09 314 421 .. 249 351 .. 236 363 .. 0.78
Alignments for each domain:
== domain 1 score: 27.4 bits; conditional E-value: 5.6e-10
TIGR00398 12 gkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAesegltPkelvdklaeefkklfkllnis 84
+ +H+G+++ ++l Dvl ry + r+ +v ++ ki lkA ++l+ e+ +k+ +++ +++k+lni+
MMSYN1_0837 30 NYIHIGNARPVLLVDVLIRYLKSRNIKVNYLQNITDIDDKIILKALDNNLNELEVSQKYTTAYLEDLKSLNIN 102
789****************************9988899**********************************8 PP
== domain 2 score: 33.6 bits; conditional E-value: 7.6e-12
TIGR00398 314 qlvahgyltvegkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvkeasee 411
+ g+l+++++kmSkS+gnv+ + d+ ++ ++++lR+ +l ++ ++ l++s + +++ + + +kl Nl ++t++fi k+ k++s++ se+
MMSYN1_0837 249 IWLHNGHLQINDEKMSKSLGNVILVRDFNKQHNKNTLRWIFLT-TNYTQPLNISDDLIYQAN--KFFEKLTNLSKKTIQFIIKNDL-KIQSINS-SEY 341
335569*********************************9886.567788898876666655..8999************998755.6777766.566 PP
TIGR00398 412 dekllkkiee 421
++k+ + +e+
MMSYN1_0837 342 INKFNEYMED 351
6666665554 PP
>> TIGR00422 valS: valine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.4 0.0 4.7e-05 0.027 27 77 .. 11 61 .. 3 135 .. 0.90
2 ! 21.4 2.6 2.2e-08 1.3e-05 523 617 .. 259 355 .. 244 385 .. 0.74
Alignments for each domain:
== domain 1 score: 10.4 bits; conditional E-value: 4.7e-05
TIGR00422 27 dedeekesfiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflp 77
+++ +k+ + P v +HiG a v l+D+liRy + + +v++l+
MMSYN1_0837 11 KKNLNKKTINLYCCGPTVYNYIHIGNARPVLLVDVLIRYLKSRNIKVNYLQ 61
55666666667777899999*****************************97 PP
== domain 2 score: 21.4 bits; conditional E-value: 2.2e-08
TIGR00422 523 qgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkveaarkFlnKlwnasrfvlmnl.edk...keleegeeklsladrwilskln 616
+ +KmSKSlgNvi d +++ +lR++ ++ + +n++ + + +a+kF +Kl n s+ +++ + +++ ++++ ++e+ ++ + ++ ln
MMSYN1_0837 259 NDEKMSKSLGNVILVRDFNKQHNKNTLRWIFLTTNY-TQPLNISDDLIYQANKFFEKLTNLSKKTIQFIiKNDlkiQSIN-SSEYINKFNEYMEDDLN 354
679*************************86555444.599********************98866554413334333333.44456666666666665 PP
TIGR00422 617 e 617
MMSYN1_0837 355 T 355
4 PP
>> TIGR00392 ileS: isoleucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.6 0.0 0.23 1.3e+02 26 77 .. 5 58 .. 2 62 .. 0.74
2 ! 27.0 3.4 5.1e-10 2.9e-07 605 719 .. 256 377 .. 234 393 .. 0.76
Alignments for each domain:
== domain 1 score: -1.6 bits; conditional E-value: 0.23
TIGR00392 26 ekvkkk..kedkkefvlhdGPPyanGeihlghalnkilKDiilryktmqGfkve 77
+++k + +kk+ l+ P+ ih+g a l D+++ry + + kv+
MMSYN1_0837 5 DSLSKTkkNLNKKTINLYCCGPTVYNYIHIGNARPVLLVDVLIRYLKSRNIKVN 58
555444114466777788888888889******************887766665 PP
== domain 2 score: 27.0 bits; conditional E-value: 5.1e-10
TIGR00392 605 ldekGrKMSKslgNvvdpekvikkyGaDvlRlyvassdpaedlkfseeilkevae...kllkilnntlrFll.lyanLdkfkpeekslkveklkelD. 697
l + +KMSKslgNv+ + k++ +lR+ +++++++ l++s++++ ++++ kl++ t++F+ + ++++++++e k+++ e D
MMSYN1_0837 256 LQINDEKMSKSLGNVILVRDFNKQHNKNTLRWIFLTTNYTQPLNISDDLIYQANKffeKLTNLSKKTIQFIIkNDLKIQSINSSEYINKFNEYMEDDl 353
566779*********************************************99971114445555799999844455666665555555554444443 PP
TIGR00392 698 ..rwilsklnslveeveealekye 719
+ls ++ l++++++ + + +
MMSYN1_0837 354 ntSLVLSLIDLLIKQINKDIVDKN 377
335788888888888888776555 PP
>> TIGR00395 leuS_arch: leucine--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.7 0.0 0.44 2.5e+02 38 65 .. 30 57 .. 20 62 .. 0.85
2 ! 23.7 0.3 4.4e-09 2.5e-06 610 705 .. 252 354 .. 242 372 .. 0.79
Alignments for each domain:
== domain 1 score: -2.7 bits; conditional E-value: 0.44
TIGR00395 38 GvlhaGhlrtftivevvarfermkgknv 65
+h+G +r v+v +r+ + ++ +v
MMSYN1_0837 30 NYIHIGNARPVLLVDVLIRYLKSRNIKV 57
568*****************99888777 PP
== domain 2 score: 23.7 bits; conditional E-value: 4.4e-09
TIGR00395 610 vnGyvllegkklskskGnlltlkeavekfGadvarlylldaaelvedadfkeseveaakkrlerlkefaeeiak...ksd.....levgeelsfldrw 699
nG++ ++++k+sks Gn++++++ +++ + r ++l+ +++++ ++ + + +a+k +e+l +++++ + k+d + +e ++ ++ +
MMSYN1_0837 252 HNGHLQINDEKMSKSLGNVILVRDFNKQHNKNTLRWIFLT-TNYTQPLNISDDLIYQANKFFEKLTNLSKKTIQfiiKNDlkiqsINSSEYINKFNEY 348
59*********************************98886.58999**************99***999998654221333333223333555555555 PP
TIGR00395 700 llsrln 705
++++ln
MMSYN1_0837 349 MEDDLN 354
666555 PP
>> TIGR00463 gltX_arch: glutamate--tRNA ligase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.4 0.9 1.1e-06 0.0006 125 190 .. 67 135 .. 15 152 .. 0.75
Alignments for each domain:
== domain 1 score: 16.4 bits; conditional E-value: 1.1e-06
TIGR00463 125 eGklilrldDtdPr..rekeeaydsileDldlLGvk.vDevvyqsdrielyYdYarkliedGkaYvcdc 190
+ k+il+ D + + +++ +leDl L ++ +D++++ s++++++ d+ ++l++ aYv d
MMSYN1_0837 67 DDKIILKALDNNLNelEVSQKYTTAYLEDLKSLNINqPDKIILISQKMNEMIDFIKNLVDINAAYVLDG 135
4566666666655544666777789*********9637***************************9875 PP
>> TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.5 0.6 0.00011 0.064 206 250 .. 238 284 .. 225 289 .. 0.78
Alignments for each domain:
== domain 1 score: 8.5 bits; conditional E-value: 0.00011
TIGR01735 206 mlaqansehcrhkifnadliidgkkqdksLfemi..kstfeatrent 250
+a+ n e + ++ n++l+i+++k++ksL ++i ++ +++++nt
MMSYN1_0837 238 FIAKNNKELAHIWLHNGHLQINDEKMSKSLGNVIlvRDFNKQHNKNT 284
57999*************************88762255555555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (441 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 278 (0.061943); expected 89.8 (0.02)
Passed bias filter: 89 (0.0198307); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 8 (0.00178253); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.23
# Mc/sec: 2753.46
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0837 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0838 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0838.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0838/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0838 [L=244]
Description: RNA methyltransferase, TrmH family, group 3 2=Generic rRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.5e-64 215.0 9.6 3.1e-64 214.7 9.6 1.0 1 TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family,
1.3e-08 32.8 1.3 5e-08 30.9 0.3 1.9 2 TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltra
0.00078 17.3 0.1 0.004 15.0 0.1 2.0 1 TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family,
Domain annotation for each model (and alignments):
>> TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 214.7 9.6 2e-67 3.1e-64 3 237 .. 4 237 .. 2 239 .. 0.93
Alignments for each domain:
== domain 1 score: 214.7 bits; conditional E-value: 2e-67
TIGR00186 3 evvyGknavleaLenqsrvkiskllesktkakkllqlvkkkgvtielvdkkkldkltk.ngnHqgivaevkpeikeleledlvktakskkapllliLd 99
+++yGk++v e+L+++ +++++++ +++ k + + +k+ ++++++v+++kld+l++ + +Hqgi+a++k +++ +++l++ +++k+++l+liLd
MMSYN1_0838 4 NLIYGKHVVFELLKKH-QNMVKEIWVKDLKILNEF-DLKNTKIKVNVVSENKLDQLLEtQTQHQGIIAQIKD-YNYTPFNQLINDLNTKEKSLVLILD 98
78**************.999999999994444433.478999*************9862679**********.9************************ PP
TIGR00186 100 eitDphNlGailRtAealgvdgvvlkkrrsapltstvvktssGalellplvrvtnlsetltklkesgfwivgtsleaeetkyekkktk.klaLvvGnE 196
+i+Dp+N+Gai+R++ l+vdg+++ +++++++stv+ktssG+++++++++ +nl+++++ lk+ fwi++t+l++++t+ +k +++ k a+++GnE
MMSYN1_0838 99 QIHDPYNFGAIIRSCSLLNVDGIIILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNDFWIYATNLNQNSTDMTKIDFAnKTAVIIGNE 196
********************************************************************************8888887559******** PP
TIGR00186 197 gkGvrklikkksDflikipmagkvdSLNvSVAtgillfeik 237
+kGv++l++k+sDf + +p ++++dS N+SVA i+ f i
MMSYN1_0838 197 QKGVSELLTKNSDFNVYVPSNKNIDSFNASVACSIICFWIA 237
************************************99875 PP
>> TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.5 0.0 0.077 1.1e+02 54 78 .. 45 69 .. 29 86 .. 0.82
2 ! 30.9 0.3 3.4e-11 5e-08 5 144 .. 94 236 .. 91 243 .. 0.82
Alignments for each domain:
== domain 1 score: 0.5 bits; conditional E-value: 0.077
TIGR00185 54 fvelvehksleefleaekekkalfl 78
+v++v ++l+++le++++++++++
MMSYN1_0838 45 KVNVVSENKLDQLLETQTQHQGIIA 69
799999999******9999998765 PP
== domain 2 score: 30.9 bits; conditional E-value: 3.4e-11
TIGR00185 5 vlyePei..PnntGnivrtCaatkae.lhlikPlGfalddkrlkraGldywefvelvehksleefleaekekkalflltkkG...tpdhisvkykdtd 96
vl+ +i P n G i+r+C+ +++ + +++ +++ lk + ++ +++ + ++l++ ++ k++ +++ +++ ++d +++++ ++
MMSYN1_0838 94 VLILDQIhdPYNFGAIIRSCSLLNVDgIIILDKKQVQVNSTVLKTSSGSAFD-IKICKTNNLNNAIKILKNND-FWIYATNLnqnSTDMTKIDFANKT 189
55555554499*************9824555778999*******99999998.799**************999.888887762234455666777888 PP
TIGR00185 97 ylvfGqetkGlPkslldelaeqklriPlteevrslnlsnavavvlyea 144
+++G+e kG+ + l +++ + ++ +P +++ s+n s a +++ +
MMSYN1_0838 190 AVIIGNEQKGVSELLTKNS-DFNVYVPSNKNIDSFNASVACSIICFWI 236
***********98777766.999*******************998855 PP
>> TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.1 2.6e-06 0.004 101 153 .. 184 236 .. 90 242 .. 0.70
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 2.6e-06
TIGR00050 101 akkgkvalvFGREdsGLtNEElekcdvlvsiptseeYpslNlsqAvavilYel 153
+ + k+a++ G E++G + + +d v +p +++ s+N s A +i++ +
MMSYN1_0838 184 DFANKTAVIIGNEQKGVSELLTKNSDFNVYVPSNKNIDSFNASVACSIICFWI 236
334578***********98888899*************************977 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (244 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 363 (0.0808824); expected 89.8 (0.02)
Passed bias filter: 97 (0.0216132); expected 89.8 (0.02)
Passed Vit filter: 9 (0.00200535); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1668.55
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0838 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0839 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0839.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0839/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0839 [L=107]
Description: secE_bact: preprotein translocase, SecE subunit 5=Equivalog Protein export
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-10 37.2 4.7 7.7e-10 36.5 4.7 1.3 1 TIGR00964 secE_bact: preprotein translocase, SecE subunit
Domain annotation for each model (and alignments):
>> TIGR00964 secE_bact: preprotein translocase, SecE subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.5 4.7 1.7e-13 7.7e-10 9 55 .. 58 104 .. 46 105 .. 0.93
Alignments for each domain:
== domain 1 score: 36.5 bits; conditional E-value: 1.7e-13
TIGR00964 9 kaEikKVvWPsrkellrytlvVivfvlflslfvflvDyvigkllsll 55
+E +K+ W l +++l+Vi+f+ +++l++f+vD vi++l++l+
MMSYN1_0839 58 SKEFFKIRWTGSGSLGKKFLIVIIFMSIFALLFFGVDVVIQYLFRLI 104
69******************************************987 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (107 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 438 (0.0975936); expected 89.8 (0.02)
Passed bias filter: 177 (0.0394385); expected 89.8 (0.02)
Passed Vit filter: 14 (0.00311943); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 731.70
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0839 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0840 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0840.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0840/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0840 [L=213]
Description: nusG 4=Probable Transcription
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-37 126.7 7.1 5.3e-25 86.4 1.5 3.1 3 TIGR01956 NusG_myco: NusG family protein
1.2e-32 111.0 3.2 2.3e-32 110.1 3.2 1.4 1 TIGR00922 nusG: transcription termination/antitermination fa
2.8e-08 31.9 0.0 3e-06 25.3 0.0 2.2 1 TIGR01955 RfaH: transcription elongation factor/antiterminat
Domain annotation for each model (and alignments):
>> TIGR01956 NusG_myco: NusG family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.5 0.1 9.2e-08 0.00014 1 43 [. 19 61 .. 19 64 .. 0.94
2 ! 86.4 1.5 3.5e-28 5.3e-25 78 154 .. 66 135 .. 58 153 .. 0.71
3 ! 25.3 0.9 1.5e-09 2.3e-06 181 255 .. 131 207 .. 122 209 .. 0.78
Alignments for each domain:
== domain 1 score: 19.5 bits; conditional E-value: 9.2e-08
TIGR01956 1 qWYivtvingnedeViknikdKvraldleneildlkvlkerev 43
qW++++ g e++V+ +++K+++ e+e+ +k+ k v
MMSYN1_0840 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLV 61
8************************************998766 PP
== domain 2 score: 86.4 bits; conditional E-value: 3.5e-28
TIGR01956 78 kikekNkfngYiyikmimeddaWfviRNtegvtGlVGSsGkgakPiPlsaeve.kekllkgisvnkkkrvlvtqtaiv 154
k + kNkf+gYi+i+mim+++aWf+iRNt+gvtG++GSsG+gakP Pl +e+ + + + +++++++
MMSYN1_0840 66 KSSIKNKFPGYIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTTEETlNMLVPNLEEIEQAH--------EQ 135
55668********************************************6555322222333333333........22 PP
== domain 3 score: 25.3 bits; conditional E-value: 1.5e-09
TIGR01956 181 kssesaekveelveekekddk..lskfkvgnlVeilvesfkgiegkikkidqekdkaiveveilgkevlvdlnfkel 255
+ e ++ e+l +e ++++ + +fkvg +V + ++ +++eg +k +d k a v +e++g+ +++++ fk++
MMSYN1_0840 131 QAHEQEQQEENLKNEAVNKKElfTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFGRWTTLEVSFKNV 207
33333333455555544443311579************************************************997 PP
>> TIGR00922 nusG: transcription termination/antitermination factor NusG
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.1 3.2 1.5e-35 2.3e-32 1 171 [. 20 209 .. 20 210 .. 0.85
Alignments for each domain:
== domain 1 score: 110.1 bits; conditional E-value: 1.5e-35
TIGR00922 1 WYvvqvasgkEkkvkenleklveeeglkdlikevivPaeevveikkgkkkvverkifPgYilikvdlndkswkavkktpkVvgfvgsgkkpkalke.. 96
W+v+ ++g E+kv +l++++++++++d ++ +++ + ++v k+gk + ++k fPgYi+i++ +++k+w ++++tp+V+gf+gs+++ + +
MMSYN1_0840 20 WFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANLVS-KSGKSSI-KNK-FPGYIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPlt 114
************************************9988764.5677544.444.9*****************************987655544445 PP
TIGR00922 97 ............eevenilnklkekk........ekpkskvefekgeqvrvieGpFanftgtveevdkekkklkvlvsifGreTpvelefsqvek 171
ee+e+ +++++++ +k + +f++g+ vrv++G +n +gtv+++d k v++++fGr T +e+ f++ve
MMSYN1_0840 115 teetlnmlvpnlEEIEQAHEQEQQEEnlkneavnKKELFTANFKVGDVVRVKSGIHENEEGTVKDMDFSKGVAFVAIEMFGRWTTLEVSFKNVEP 209
59**********777776666555443433223344556778***************************************************96 PP
>> TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.3 0.0 2e-09 3e-06 1 157 [. 20 206 .. 20 208 .. 0.57
Alignments for each domain:
== domain 1 score: 25.3 bits; conditional E-value: 2e-09
TIGR01955 1 WYLlyckprqeqrA....eehLerqsv..ecylPmvsvekkkrgkkqlveepLFPnYlFieldiekdsvttirstRGvsrlvrf...gekpakvddd. 88
W+++ c+ ++e++ +++++ s+ e++ +s ++ ++ + + FP+Y+Fi++ ++++ + ir t Gv+ ++ g+kp ++ +
MMSYN1_0840 20 WFVISCQTGHEEKVlgdlQQKIKSASIedEVFSIKISKANLVSKSGKSSIKNKFPGYIFINMIMSEKAWFLIRNTPGVTGFIGSsgrGAKPSPLTTEe 117
88888888888776222233344444422566666666665544444445567****************************97522266777775432 PP
TIGR01955 89 ....lieqlkqkelealksakks....................llkkGdkvritdGafagleaiflekdgekR.svlLlnligkqvkvsvpets 157
l+ +l++ e +a+++ ++k Gd vr+++G ++ e+ + d +k + + +++ g+ + ++v ++
MMSYN1_0840 118 tlnmLVPNLEEIE-----QAHEQeqqeenlkneavnkkelftaNFKVGDVVRVKSGIHENEEGTVKDMDFSKGvAFVAIEMFGRWTTLEVSFKN 206
2222333332221.....1111100000111112222344445677888888888888888887776665554145677888888887777665 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (213 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 245 (0.05459); expected 89.8 (0.02)
Passed bias filter: 118 (0.0262923); expected 89.8 (0.02)
Passed Vit filter: 12 (0.0026738); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.19
# Mc/sec: 1609.88
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0840 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0851 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0851.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0851/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0851 [L=60]
Description: lipoprotein, putative 1=Unknown Lipoprotein
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-06 24.5 0.5 1.9e-06 24.5 0.5 1.1 1 TIGR04547 Mollicu_LP: MOLPALP family lipoprotein
Domain annotation for each model (and alignments):
>> TIGR04547 Mollicu_LP: MOLPALP family lipoprotein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.5 0.5 4.2e-10 1.9e-06 1 30 [. 1 32 [. 1 56 [. 0.82
Alignments for each domain:
== domain 1 score: 24.5 bits; conditional E-value: 4.2e-10
TIGR04547 1 MKKlLaiLgalslvasSsltvvACtkkek..e 30
MKKlL+iLg+++l++ +++v++C++ + +
MMSYN1_0851 1 MKKLLTILGSTTLLVIPTISVLSCKTINAisT 32
*************************9988641 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (60 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 207 (0.046123); expected 89.8 (0.02)
Passed bias filter: 116 (0.0258467); expected 89.8 (0.02)
Passed Vit filter: 13 (0.00289661); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 430.81
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0851 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0852 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0852.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0852/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0852 [L=76]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
0.0025 15.4 1.6 0.0028 15.2 1.6 1.0 1 TIGR02866 CoxB: cytochrome c oxidase, subunit II
0.0032 14.9 6.1 0.016 12.5 6.1 1.7 1 TIGR04182 glyco_TIGR04182: glycosyltransferase, TIGR04182 fa
0.0048 15.5 7.2 0.0072 15.0 0.4 2.4 2 TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain
------ inclusion threshold ------
0.025 12.4 0.5 0.025 12.4 0.5 1.8 2 TIGR03745 conj_TIGR03745: integrating conjugative element me
1.4 6.6 14.1 0.56 7.9 0.8 2.1 2 TIGR02611 TIGR02611: TIGR02611 family protein
5.3 4.9 11.1 0.37 8.6 3.1 2.0 2 TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
Domain annotation for each model (and alignments):
>> TIGR02866 CoxB: cytochrome c oxidase, subunit II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.2 1.6 3.7e-06 0.0028 14 72 .. 7 67 .. 2 75 .. 0.60
Alignments for each domain:
== domain 1 score: 15.2 bits; conditional E-value: 3.7e-06
TIGR02866 14 llllavavliallvaalliyvvfkfrkksdee.kpskisenrkleivwtvip.viivvgli 72
l++++ + ++ll+++++iy+v k +k+++ + sk s + l ++v++ ++i+ g+i
MMSYN1_0852 7 PLVVSIVLGLILLIVGIIIYFVTKKKKEQNLQvYKSKSSFVSILATAFIVAGvLVILFGVI 67
4567777778899***********9983333312233333334444445555555555555 PP
>> TIGR04182 glyco_TIGR04182: glycosyltransferase, TIGR04182 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.5 6.1 2.2e-05 0.016 223 283 .. 7 72 .. 6 76 .] 0.74
Alignments for each domain:
== domain 1 score: 12.5 bits; conditional E-value: 2.2e-05
TIGR04182 223 PlfyfgilGailllaGvlvgvyvvveW...lk..giehellailtalliivGvqlllfGllsdlil 283
Pl+ +lG+ill++G+++ ++ + l+ + + ++il++++i+ Gv ++lfG++s l+
MMSYN1_0852 7 PLVVSIVLGLILLIVGIIIYFVTKKKKeqnLQvyKSKSSFVSILATAFIVAGVLVILFGVISPLLS 72
56666789999999999886555443311133334566789*********************9876 PP
>> TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.4 9.6e-06 0.0072 13 33 .. 11 33 .. 7 34 .. 0.72
2 ? 4.0 1.4 0.027 20 11 23 .. 52 64 .. 42 73 .. 0.63
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 9.6e-06
TIGR01167 13 llllGl.lllgl.aglllrkrkk 33
++lGl ll+++ ++++++k+kk
MMSYN1_0852 11 SIVLGLiLLIVGiIIYFVTKKKK 33
67899995555538888888887 PP
== domain 2 score: 4.0 bits; conditional E-value: 0.027
TIGR01167 11 slllllGllllgl 23
++++++G+l++++
MMSYN1_0852 52 TAFIVAGVLVILF 64
4566666644433 PP
>> TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.4 0.5 3.4e-05 0.025 76 100 .. 4 30 .. 2 34 .. 0.84
2 ? 0.2 0.1 0.21 1.5e+02 84 91 .. 55 62 .. 35 71 .. 0.55
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 3.4e-05
TIGR03745 76 tWgdlgaivvvGvvllvv..iiwlltk 100
+W l++ +v+G +ll+v ii+++tk
MMSYN1_0852 4 KWIPLVVSIVLGLILLIVgiIIYFVTK 30
8*************99863378***98 PP
== domain 2 score: 0.2 bits; conditional E-value: 0.21
TIGR03745 84 vvvGvvll 91
+v Gv+++
MMSYN1_0852 55 IVAGVLVI 62
22233333 PP
>> TIGR02611 TIGR02611: TIGR02611 family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.6 6.9 0.016 12 27 42 .. 10 25 .. 3 30 .. 0.84
2 ? 7.9 0.8 0.00075 0.56 14 41 .. 41 67 .. 27 72 .. 0.60
Alignments for each domain:
== domain 1 score: 3.6 bits; conditional E-value: 0.016
TIGR02611 27 lvlvvGlvvlvvGiii 42
+ +v+Gl++l+vGiii
MMSYN1_0852 10 VSIVLGLILLIVGIII 25
5579**********97 PP
== domain 2 score: 7.9 bits; conditional E-value: 0.00075
TIGR02611 14 kakrkaygfvvrplvlvvGlvvlvvGii 41
k+ ++ + ++ ++ +v+G+ v+++G+i
MMSYN1_0852 41 KS-KSSFVSILATAFIVAGVLVILFGVI 67
22.3334445667777888888888887 PP
>> TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.6 3.1 0.0005 0.37 120 150 .. 3 33 .. 1 34 [. 0.69
2 ? 3.1 1.3 0.024 18 113 144 .. 33 64 .. 27 69 .. 0.53
Alignments for each domain:
== domain 1 score: 8.6 bits; conditional E-value: 0.0005
TIGR03927 120 ektssilllvliaglillliagiyflirkvk 150
+k+++ ++ +++++++l+ ++iyf+ +k k
MMSYN1_0852 3 DKWIPLVVSIVLGLILLIVGIIIYFVTKKKK 33
6777777777777777777777788888776 PP
== domain 2 score: 3.1 bits; conditional E-value: 0.024
TIGR03927 113 steeeetektssilllvliaglillliagiyf 144
++++ + k++s ++ +l ++i++++++i f
MMSYN1_0852 33 KEQNLQVYKSKSSFVSILATAFIVAGVLVILF 64
33344445555555666666666666665544 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (76 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 575 (0.128119); expected 89.8 (0.02)
Passed bias filter: 234 (0.052139); expected 89.8 (0.02)
Passed Vit filter: 38 (0.00846702); expected 4.5 (0.001)
Passed Fwd filter: 7 (0.00155971); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 519.71
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0852 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0853 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0853.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0853/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0853 [L=239]
Description: hypothetical protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (239 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 319 (0.0710784); expected 89.8 (0.02)
Passed bias filter: 72 (0.0160428); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1806.39
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0853 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0859 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0859.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0859/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0859 [L=653]
Description: topA 4=Probable DNA topology
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.1e-136 453.1 5.1 6.6e-136 452.8 5.1 1.1 1 TIGR01051 topA_bact: DNA topoisomerase I
5.3e-75 250.7 4.6 8.6e-75 250.0 4.6 1.2 1 TIGR01054 rgy: reverse gyrase
2.6e-56 189.0 10.8 2.3e-55 185.9 10.8 2.2 1 TIGR01057 topA_arch: DNA topoisomerase I
1.4e-42 144.0 15.6 5.4e-42 142.1 15.5 1.7 1 TIGR01056 topB: DNA topoisomerase III
Domain annotation for each model (and alignments):
>> TIGR01051 topA_bact: DNA topoisomerase I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 452.8 5.1 5.9e-139 6.6e-136 1 624 [. 4 610 .. 4 616 .. 0.91
Alignments for each domain:
== domain 1 score: 452.8 bits; conditional E-value: 5.9e-139
TIGR01051 1 lvivESPaKaktikkyLg.....keyeveasvGHirdlpksasdvdekyarlgvdvekdfepeyvvlkekkkvvkelkklakkadevylAtDeDREGE 93
lv++ESP+K +ik+yL+ ++++v as GHi ++ + ++ lg+d+e +++p +v+ +++kk+++++kk+ k ad ++lA+D+DREGE
MMSYN1_0859 4 LVLLESPSKIEKIKHYLEesfpeNQFVVLASGGHINSIADK-----GAW-GLGIDLE-TMQPDFVIDSSRKKIISQIKKEGKTADLIILASDPDREGE 94
799**************743444689************999.....334.6889886.59************************************** PP
TIGR01051 94 aiawHlaellkeklkvlkRivFnEitkkairealkkpreidlnlVeaqeaRrilDrlvGyklspllwkkvakglSAGRVqSvalrliverEreikaFk 191
aia+Hla+l k ++++ kRi+FnEit +ai +a+++ ++id+nlV+aq +R+ilD+++Gy +s+ l k + +SAGRVq al ++ r+ ik+Fk
MMSYN1_0859 95 AIAYHLANLFKDHTNI-KRITFNEITSEAITNAFNNLKDIDMNLVNAQISRQILDKIIGYLVSKSLQ-KSTGLMSAGRVQTPALNILTTRDTLIKNFK 190
************9999.*************************************************9.77899************************* PP
TIGR01051 192 peeywdvdaklekkkeekfeakllevkgkklkaksdldlldeaeakalkeklkkeelaveeaeekekkskpkppfitstLqqeasrkLgfsakktmsi 289
y ++ + +e+ +++++ +l++ k++ l ++++ +de++aka++++l +e ++ ++ ++ ++++ +p+ t+ L q++ +kL++s+++++
MMSYN1_0859 191 EVLYKKIFV-IES--KRAINLSLVKDKNNVLVNTEKTYYIDEKQAKAIVDEL-GEVYRCTDYKSTAYETRSFKPYSTAGLLQDGFTKLKLSTSQITLA 284
*******98.444..577999**************9***************9.678999999************************************ PP
TIGR01051 290 AqrLYEgvevkekkvglitYmRtDsvrlseeaveearkliekeygkeylaekpkrykkkeknaqeAHEairPtsvlltpeelkkelkkdel.rLYeLi 386
Aq+LYE +g+itY+RtDsv+ s+++++e++++i+k+y++++ + kk++n+qeAHE+irPt++ ltpe+ e++++ l r+Y+Li
MMSYN1_0859 285 AQKLYE--------LGYITYIRTDSVKYSSQFISEVKDYISKNYSSDLFKAP--VVGKKDQNSQEAHESIRPTNIWLTPEKASLEIEDNLLkRVYNLI 372
******........5********************************87544..45666667*********************99999865379**** PP
TIGR01051 387 wkrtvAsqmadakleslsvrlaaekgevkfkasgrklkfdGflkvykelkddeke.........ekekeLpklkegdkvkl....kevkseehetkpp 471
w + s m+ + + ++++ + ++fk s +++k G++ + ++++d++ e +++ p+ + +d +++ k +k+e+ +t+pp
MMSYN1_0859 373 WWNSIKSLMKGPSGFNHRWTFNN--NGYEFKQSWQEVKDLGYQAIKHSSSDENIEltddgeevvKTKDPKPEYQFNDDFEIniskKYIKIEDAKTNPP 468
**************999999999..679**********************9998888878777666677788998997654222278*********** PP
TIGR01051 472 aRyteaslvkeLEelgiGRPStYasiisvildRgYvkl.ekkalvptelgevvtdllekhfkelvdvdFtakmEkeLDeiaegkaewkevlkeFylgf 568
+ +asl+keL +lgiGRPStY++i+ + dR+Yv+ ++k +v t+ g +++l +h+ + + ++ta+mE++LDei +g +++++lke y++
MMSYN1_0859 469 KMFNQASLIKELKNLGIGRPSTYNPILTKLKDREYVEFpKSKPIVVTNKGYSANQYLYDHYLDFFNLNYTAEMEEKLDEITKGSFDYVNWLKEIYNAL 566
************************************9835688******************************************************9 PP
TIGR01051 569 eekvekalkklveekkeeiekkekekikkkcekcgkelvvklgkyGkflacsnfp..k 624
+ kv+k ei + +k++ c++cg +lv+ +++ +csnf k
MMSYN1_0859 567 NIKVKK-----------EIGE---AKTEAICPRCGANLVYIKSRFNRGRGCSNFTktK 610
998883...........2333...5677888888888888888888888888777334 PP
>> TIGR01054 rgy: reverse gyrase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 250.0 4.6 7.7e-78 8.6e-75 705 1169 .. 66 566 .. 56 568 .. 0.80
Alignments for each domain:
== domain 1 score: 250.0 bits; conditional E-value: 7.7e-78
TIGR01054 705 skeiieilReladevdevliatDpDteGekigyDlalalrpynrnikRveFhevtkrailealeslrsldenlvkaqvvRRieDRWiGFrlsqklw 800
k+ii ++++ + +d +++a DpD+eGe i+y la++ + ++ nikR+ F+e+t ai +a ++l+++d nlv+aq+ R i D+ iG+ +s+ l+
MMSYN1_0859 66 RKKIISQIKKEGKTADLIILASDPDREGEAIAYHLANLFKDHT-NIKRITFNEITSEAITNAFNNLKDIDMNLVNAQISRQILDKIIGYLVSKSLQ 160
68899***********************************998.***************************************************9 PP
TIGR01054 801 ekFnkkylsaGRvqtPvLGWiieRykeykekkks..llllklend.................islkkiledeleakelkkdekevevkvveekee. 876
++ +saGRvqtP L + R + k+ k++ ++++e+ ++ ++ ++++ +ak + + ++ ev ++++
MMSYN1_0859 161 KS--TGLMSAGRVQTPALNILTTRDTLIKNFKEVlyKKIFVIESKrainlslvkdknnvlvnTEKTYYIDEK-QAKAI--VDELGEVYRCTDYKSt 251
96..679***************99554444333210223333333333322222232222211111112221.22222..2223355555555545 PP
TIGR01054 877 ..ekpPlPPyttdtlLedankrlglsakeimkiaqeLFelGlitYhRtdstRvsddGmrvakeylkkrlleellkpRewge.....gGaheciRPt 965
e + Py t lL+d +l+ls+++i aq L+elG+itY Rtds + s + + k+y++k++ +l+k g+ + ahe+iRPt
MMSYN1_0859 252 ayETRSFKPYSTAGLLQDGFTKLKLSTSQITLAAQKLYELGYITYIRTDSVKYSSQFISEVKDYISKNYSSDLFKAPVVGKkdqnsQEAHESIRPT 347
559999********************************************************************98666642222268*******9 PP
TIGR01054 966 rPldtddleellkegviklektrnhlkvYdliFrRFiasqmkeak...................veveeitlkagleekeegvveikeegfslvyp 1042
++ ++++e+ + +vY+li+ i s mk + ev+++ +a ++ + ++e + +g + v +
MMSYN1_0859 348 NIW------LTPEKASLEIED-NLLKRVYNLIWWNSIKSLMKGPSgfnhrwtfnnngyefkqswQEVKDLGYQAIKHSSSDENIELTDDGEEVVKT 436
743......333344555555.33337***************998899***********9999877888888888888888888999999888877 PP
TIGR01054 1043 lklkkerriekseslkvldkelrkvpkvyl.....ytegeivklmkerGiGRPstYakivekllergYvveskdnkliptklGievyeyLinlkyp 1133
k e + + ++++k+ k+ ++ +++++++k++k+ GiGRPstY i+ kl +r+Yv k++ ++ t++G + +yL + +y
MMSYN1_0859 437 KDPKPEYQFNDD-FEINISKKYIKIEDAKTnppkmFNQASLIKELKNLGIGRPSTYNPILTKLKDREYVEFPKSKPIVVTNKGYSANQYLYD-HYL 530
666666555544.6666666666665544333566**********************************9888899***************8.*** PP
TIGR01054 1134 klvseertReLeeamdkiekGevdylevLkelyeei 1169
++ + t e+ee++d+i kG dy++ Lke+y+ +
MMSYN1_0859 531 DFFNLNYTAEMEEKLDEITKGSFDYVNWLKEIYNAL 566
*********************************975 PP
>> TIGR01057 topA_arch: DNA topoisomerase I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 185.9 10.8 2e-58 2.3e-55 30 617 .. 19 608 .. 9 609 .. 0.83
Alignments for each domain:
== domain 1 score: 185.9 bits; conditional E-value: 2e-58
TIGR01057 30 yyelerdgkkiivasavGhlfglaekesgeypvfdle.WvPifeadkgkeyvkkylkvlkklakgadeyivacdydieGeliGfkalkyacgvekakr 126
y e +++ +v ++ Gh+ ++a+k + dle +P f++d + kk + +kk k ad i a+d d eGe i ++ + + ++ + kr
MMSYN1_0859 19 YLEESFPENQFVVLASGGHINSIADKGAWGL-GIDLEtMQPDFVIDSSR---KKIISQIKKEGKTADLIILASDPDREGEAIAYHLANLFKDHTNIKR 112
44555567788999999*******9999444.4688835799***8765...788999**************************************** PP
TIGR01057 127 mkfstltkkdirrayknleeidyglvdaGaarhildwlfGvnlsralmeaikkaagrfvvlsaGrvqgPtlailverereikkfvPkpy...w..... 216
+ f +t + i++a++nl++id++lv+a ++r+ild + G +s++l ++ +saGrvq+P+l il+ r ik+f+ + y +
MMSYN1_0859 113 ITFNEITSEAITNAFNNLKDIDMNLVNAQISRQILDKIIGYLVSKSLQKST-------GLMSAGRVQTPALNILTTRDTLIKNFKEVLYkkiFviesk 203
*********************************************998763.......489********************99987665222311111 PP
TIGR01057 217 .vikillekgggvlkaesekekifeeeeaksilekvkksksakveevrvkrsklkPpppfdlGtlqreayrvfglsPkktqeiaqelyeealisyPrt 313
+i++ l k+ + + ++ek+ +e++ak i++++ + + ++ +++ + +p+ l ++ + ++ls + aq+lye ++i+y rt
MMSYN1_0859 204 rAINLSLVKDKNNVLVNTEKTYYIDEKQAKAIVDELGEV--YRCTDYKSTAYETRSFKPYSTAGLLQDGFTKLKLSTSQITLAAQKLYELGYITYIRT 299
145566667778888999999999***********9876..999******************99999******************************* PP
TIGR01057 314 ssqklPksinyrkilknlakkPlyreaaellkekgelkPveGkked...pahPaihptG..eiPke.elskde...kkvydlivrrflavfseeaire 402
+s k s ++ + +k+ + k +l+k Pv Gkk+ +ah +i pt P++ l ++ k+vy+li + +++
MMSYN1_0859 300 DSVKY--SSQFISEVKDYISKN---YSSDLFK-----APVVGKKDQnsqEAHESIRPTNiwLTPEKaSLEIEDnllKRVYNLIWWNSIKSLMKGPSGF 387
**996..456666666665432...2345555.....79999998523379*99999853345665455444334479***************99999 PP
TIGR01057 403 klkvkleikeekfklsgkrvvkkGWlevykyskleekel..............Pelkkgdkikv....vkvkvekketkpParydkaslikelekrgl 482
+ + ++++++ +fk s + v++ G+ + + s e++el Pe + +d ++ + +k+e +t+pP+ +++aslikel ++g+
MMSYN1_0859 388 NHRWTFNNNGYEFKQSWQEVKDLGYQAIKHSSSDENIELtddgeevvktkdpkPEYQFNDDFEIniskKYIKIEDAKTNPPKMFNQASLIKELKNLGI 485
99************************9999888877776555555555556558888888654422224699************************** PP
TIGR01057 483 Gtkatraeiieklykrgyie..gkksikvtplGekvietlkryvpeiiseeltrefekklediregkitkdevideakkrlrkileefkkrledigke 578
G +t i+ kl +r+y+e +k i vt+ G + + l + + + + t e+e+kl++i +g + l+e+ + + ++
MMSYN1_0859 486 GRPSTYNPILTKLKDREYVEfpKSKPIVVTNKGYSANQYLYDHYLDFFNLNYTAEMEEKLDEITKGSFDYVN-----------WLKEIY---NALNIK 569
*******************944566799***********************************999875433...........333333...344577 PP
TIGR01057 579 lakaldseevvgkCpkCGgklvvkyakkgrfvgCsnype 617
+ k +++ + ++ Cp+CG +lv ++++ +r +gCsn+ +
MMSYN1_0859 570 VKKEIGEAKTEAICPRCGANLVYIKSRFNRGRGCSNFTK 608
8889999999**************************986 PP
>> TIGR01056 topB: DNA topoisomerase III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 142.1 15.5 4.8e-45 5.4e-42 74 686 .. 59 652 .. 45 653 .] 0.76
Alignments for each domain:
== domain 1 score: 142.1 bits; conditional E-value: 4.8e-45
TIGR01056 74 klkvkkktkkqfnvikrllkekevdevviAtDadREGeliareildklkvrkkvrvkRlwlssltdkairkalkklrskseteslyksavaRaraDWl 171
+++ ++ kk + ik+ k +d ++ A+D+dREGe ia+++ + k + ++kR+ ++++t +ai +a+++l+ ++l ++ ++R+ D +
MMSYN1_0859 59 DFVIDSSRKKIISQIKKEGK--TADLIILASDPDREGEAIAYHLANLFKDHT--NIKRITFNEITSEAITNAFNNLKDI--DMNLVNAQISRQILDKI 150
57778888889999999888..99********************99876555..**********************765..589************** PP
TIGR01056 172 vGinltRaftllgreaGfdgvlsvGRvqtPtLalvvkReeeienFvakkyyevkAtiakdeeeltaewqd......ykdeeerllhedlaervvkdls 263
+G +++ + + g +s GRvqtP L+++ R+ i+nF+ + y ++ +k + +l +++ + e++ ++e+ a+ +v++l
MMSYN1_0859 151 IGYLVSKSLQKS------TGLMSAGRVQTPALNILTTRDTLIKNFKEVLYKKIFVIESKRAINL--SLVKdknnvlVNTEKTYYIDEKQAKAIVDELG 240
********9998......899*************************998877765444444333..332223466778999999************98 PP
TIGR01056 264 qkpavvtelkkerkkesaPllydLsaLqedaakrfglsAkevLdiaqkLYEkhkLitYPRtDsrylsedekeelkevlealkvkakallpvkkldeki 361
+ t++k ++ ++ + ++y+ + L +d + +ls ++ aqkLYE itY RtDs s++ e+k+ ++ +l++ +++++k
MMSYN1_0859 241 EVY-RCTDYKSTAYETRSFKPYSTAGLLQDGFTKLKLSTSQITLAAQKLYEL-GYITYIRTDSVKYSSQFISEVKDYISKNYS--SDLFKAPVVGKKD 334
877.89**********************************9999*******9.9*********99999999999998886544..4555566888888 PP
TIGR01056 362 rnrlvndkkvedHhaiipteeslalsdLseeE.rkvYkliakrylaqflpkaeyeetkieleigkelFeakgkvlqeaGwkalldkkeedeEdedttl 458
+n+ + + i t e+ +l ++++ ++vY+li + + ++ + + +++ ++ F+ + +++ G++a+ k++ ++E+ +
MMSYN1_0859 335 QNSQEAHESIRP-TNIWLTPEKASLE-IEDNLlKRVYNLIWWNSIKSLMKGPSGFNHRWTFNNNGYEFKQSWQEVKDLGYQAI--KHSSSDEN----I 424
887766666654.3566666776666.56664267***************99999999************************9..56677777....6 PP
TIGR01056 459 PalqkgdelavekleelekqtkPPkrytegtLls..........AmtnpaafvqdkgLkkvLketkGlGteAtRAdiiekLlkrkflek.kkkkifit 545
+ g+e+ k+ kP ++++ ++ A tnp ++ +++ L k Lk+ G+G + t i+ kL+ r+++e k k i +t
MMSYN1_0859 425 ELTDDGEEVVK------TKDPKPEYQFNDDFEINiskkyikiedAKTNPPKMFNQASLIKELKN-LGIGRPSTYNPILTKLKDREYVEFpKSKPIVVT 515
66677777643......34555555555543221111111133388899999999999999985.6*********************9726678**** PP
TIGR01056 546 kkGkallqllp.ellt..kPdltaeWEqvLseiaagklksddFikklkelvkqlvkeekksketlqkdavekvacggkkkikkkkngrlidakkspel 640
+kG + q l + l + + tae E++L+ei++g ++ +++k++ + ++ vk+e + +t + + +++ ++ + + + g +++ ++ +
MMSYN1_0859 516 NKGYSANQYLYdHYLDffNLNYTAEMEEKLDEITKGSFDYVNWLKEIYNALNIKVKKEIGEAKT--EAICPRCGANLVYIKSRFNRG--RGCSNFTKT 609
********99867776226667************************999998777766555444..344444433333333333333..333333332 PP
TIGR01056 641 k......evgngaefaivkkrrekssafekvkakdkakatkkdksskskksn 686
k e+ +g+ + vk+ + + + + k+ k+k+ kk+n
MMSYN1_0859 610 KcgyreyEQPDGTWKEYVKEEKPQEESSTETKSTKKSKT---------KKDN 652
210000034444444444444444444444444444444.........4443 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (653 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 299 (0.0666221); expected 89.8 (0.02)
Passed bias filter: 126 (0.0280749); expected 89.8 (0.02)
Passed Vit filter: 13 (0.00289661); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 3349.06
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0859 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0870 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0870.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0870/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0870 [L=588]
Description: C4-dicarboxylate anaerobic carrier 2=Generic Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.019 12.8 1.3 0.061 11.2 1.3 1.9 1 TIGR02761 TraE_TIGR: type IV conjugative transfer system pro
Domain annotation for each model (and alignments):
>> TIGR02761 TraE_TIGR: type IV conjugative transfer system protein TraE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.2 1.3 1.3e-05 0.061 3 50 .. 10 56 .. 8 61 .. 0.92
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 1.3e-05
TIGR02761 3 feqrkseleklskrrnlllvlvvgvLlvnvllslvlivalkktrtvvv 50
+++++s+++k+ kr +l +++++L++ vl+ ++ i+ ++kt+t +v
MMSYN1_0870 10 MNNFNSNIKKK-KRLKMLSSFSILLLIMLVLMLVSWILYWSKTKTDLV 56
6899******9.99999999***********************99887 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (588 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 333 (0.0741979); expected 89.8 (0.02)
Passed bias filter: 85 (0.0189394); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 3838.15
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0870 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0872 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0872.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0872/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0872 [L=364]
Description: GTP-binding protein YchF 2=Generic Ribosome biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.5e-154 511.3 2.4 3.9e-154 511.1 2.4 1.0 1 TIGR00092 TIGR00092: GTP-binding protein YchF
1.6e-26 91.1 7.2 9.2e-25 85.3 1.8 2.9 2 TIGR02729 Obg_CgtA: Obg family GTPase CgtA
1.8e-10 38.8 1.5 1.8e-08 32.3 0.0 2.3 2 TIGR00231 small_GTP: small GTP-binding protein domain
4.7e-10 36.8 0.6 9.3e-09 32.6 0.0 2.3 2 TIGR03156 GTP_HflX: GTP-binding protein HflX
4.2e-08 30.3 0.5 7.5e-08 29.5 0.0 1.6 2 TIGR00437 feoB: ferrous iron transport protein B
4.5e-08 30.5 2.0 2.4e-06 24.8 0.1 2.4 2 TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
6.1e-07 27.0 2.4 8e-06 23.4 0.2 2.3 2 TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding prote
2.2e-05 21.9 6.4 2.6e-05 21.7 0.1 2.9 3 TIGR00436 era: GTP-binding protein Era
0.00077 17.2 1.1 0.0024 15.5 0.1 2.0 2 TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding prote
0.00082 16.3 4.1 0.0028 14.5 0.0 2.5 3 TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation
0.0023 15.0 0.1 0.0023 15.0 0.1 2.3 2 TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
0.0078 13.3 0.1 0.0078 13.3 0.1 2.2 3 TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
------ inclusion threshold ------
0.011 12.9 0.1 0.055 10.5 0.0 2.0 2 TIGR00750 lao: LAO/AO transport system ATPase
Domain annotation for each model (and alignments):
>> TIGR00092 TIGR00092: GTP-binding protein YchF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 511.1 2.4 1.1e-156 3.9e-154 1 368 [] 1 364 [] 1 364 [] 0.99
Alignments for each domain:
== domain 1 score: 511.1 bits; conditional E-value: 1.1e-156
TIGR00092 1 mnlkaGivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnvpderldkLaeivksekvvpttlefvDiaGLvkGaskGeGLGnkfLaniRev 98
m+l+ GivGLpnvGkstlf+ait++k+ eaanyPfatiepn+g+v+vpd rld+L +i++s+k v tt+efvDiaGL++Gas+GeGLGn+fLaniR++
MMSYN1_0872 1 MGLQVGIVGLPNVGKSTLFNAITNSKV-EAANYPFATIEPNVGIVEVPDYRLDELFKIFNSKKRVATTIEFVDIAGLIAGASQGEGLGNAFLANIRQT 97
99*************************.********************************************************************** PP
TIGR00092 99 daivhvvRcfedddivhvegkvdPvrDlevineeLilaDlelvekkiekvkkkakeg.keakeelellekvleaLengkkvrklklneeelkiiksln 195
dai++vvRcf+d++i+hve+++dP+rD+e+in eL+laD +v+k+++k+ k k+g k ak+e++ll+ +l++L++g + +l l+ee+++++ks++
MMSYN1_0872 98 DAICQVVRCFDDKEIMHVENSIDPIRDIEIINLELMLADQTTVKKRLDKILPKFKSGdKVAKVEYDLLNYLLDTLNKGILLNSLTLDEEQTDLLKSYQ 195
*******************************************************999**************************************** PP
TIGR00092 196 lLtakPilivanvseddlvnkenkllekvkeivaefkegdkvvlvsaeleselselkeeereeflkelgleevsglnrviraaykllnLisfftaGkk 293
lLt+kPi++v nvs+ +l + +n++++kv++ ++ k +++vv ++a++e++lse ++ee+ eflkelg++e gl+++iraay++l+L++fftaG++
MMSYN1_0872 196 LLTSKPIIYVCNVSDTELLE-DNDYVKKVRQFAE--KSNSQVVKICAKIEEDLSEASKEEKIEFLKELGIKES-GLDQLIRAAYDTLGLQTFFTAGPQ 289
*******************9.8**********99..9999*******************************98.************************ PP
TIGR00092 294 evraWtikkGtkapqaagvihtDlekgfikaevikyedlielkseqeakekGllrleGkdyivkdgDvllfkanv 368
evr W++kkG++ap++agvihtD+ kgfika++ + +dl+ l se+++ke+G++rleGk yi++dgDv++fk+nv
MMSYN1_0872 290 EVRSWQFKKGWTAPKCAGVIHTDFLKGFIKADIYSINDLLVLGSEKAIKEAGKMRLEGKTYIMQDGDVCFFKFNV 364
*************************************************************************96 PP
>> TIGR02729 Obg_CgtA: Obg family GTPase CgtA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 85.3 1.8 2.7e-27 9.2e-25 159 316 .. 4 186 .. 3 195 .. 0.73
2 ! 7.6 0.9 0.0012 0.41 261 322 .. 188 250 .. 159 257 .. 0.77
Alignments for each domain:
== domain 1 score: 85.3 bits; conditional E-value: 2.7e-27
TIGR02729 159 dvglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvvevee................eksfvlaDiPgliegasegagLGleFLkHiertrvll 240
+vg+vGlpn+GkStl++a++++k + a+YpF+T++Pn+G+vev + +++ ++Di gli gas+g gLG+ FL i +t ++
MMSYN1_0872 4 QVGIVGLPNVGKSTLFNAITNSKVEAANYPFATIEPNVGIVEVPDyrldelfkifnskkrvATTIEFVDIAGLIAGASQGEGLGNAFLANIRQTDAIC 101
59***************************************986533333333333222222356689****************************** PP
TIGR02729 241 hlidlsee......dek.dpvedleviekeLkkyseeLaekpelvvlnkidllee..eeleellkelkeelekkvlaisaltkeg 316
+++ + ++ +++ dp++d+e+i+ eL +++ ++k+ +l k+ ++ + +ll+ l ++l+k +l s + +e+
MMSYN1_0872 102 QVVRCFDDkeimhvENSiDPIRDIEIINLELMLADQTTVKKRLDKILPKFKSGDKvaKVEYDLLNYLLDTLNKGILLNSLTLDEE 186
***7644311111144469999999999999999999888887777777766655423333455555566566666666555555 PP
== domain 2 score: 7.6 bits; conditional E-value: 0.0012
TIGR02729 261 ekeLkkyseeLaekpelvvlnkidl..leeeeleellkelkeelekkvlaisaltkegleellk 322
++ Lk+y+ L++kp + v+n d+ le+++ +++++++e+++++v++i a +e+l+e k
MMSYN1_0872 188 TDLLKSYQL-LTSKPIIYVCNVSDTelLEDNDYVKKVRQFAEKSNSQVVKICAKIEEDLSEASK 250
445777765.*********9988752167789999999***************99999988655 PP
>> TIGR00231 small_GTP: small GTP-binding protein domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.3 0.0 5.3e-11 1.8e-08 5 93 .. 4 106 .. 2 120 .. 0.89
2 ? 5.4 0.4 0.01 3.5 78 154 .. 166 244 .. 152 252 .. 0.75
Alignments for each domain:
== domain 1 score: 32.3 bits; conditional E-value: 5.3e-11
TIGR00231 5 kivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt...............ykvnllDTaGqedfdairrlyvreverslevvdiv 87
+++ivG ++vGKstL+n ++ k ++ + +p++t + + +e+ + ++++++D+aG ++ + + ++ + ++ +d +
MMSYN1_0872 4 QVGIVGLPNVGKSTLFNAITNSK-VEAANYPFATIEPNVGIVEVPDYRldelfkifnskkrvaTTIEFVDIAGLIAGASQGEGLGNAFLANIRQTDAI 100
79*********************.999999*9999999998888887799***********************9999999999999999999999998 PP
TIGR00231 88 ilvldv 93
v++
MMSYN1_0872 101 CQVVRC 106
887765 PP
== domain 2 score: 5.4 bits; conditional E-value: 0.01
TIGR00231 78 erslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd....dlktkvkslfaklnaepiielsaetgkn 154
+ +l++++ il++++ + +qt ++ + ++pii v n D++ d +kv+++++k+n +++++ a+ ++
MMSYN1_0872 166 NYLLDTLNKGILLNSLTLDE-EQTDLLKSYQLLTSKPIIYVCNVSDTELlednDYVKKVRQFAEKSNS-QVVKICAKIEED 244
56778888888877777777.9999999999999************9998877777777777777666.677777776665 PP
>> TIGR03156 GTP_HflX: GTP-binding protein HflX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.6 0.0 2.7e-11 9.3e-09 191 235 .. 4 48 .. 2 150 .. 0.92
2 ? 2.3 0.2 0.042 15 271 320 .. 201 250 .. 186 275 .. 0.76
Alignments for each domain:
== domain 1 score: 32.6 bits; conditional E-value: 2.7e-11
TIGR03156 191 tvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpe 235
+v++vG N GKstl+na+t+++v a++ FAT++p + +++p+
MMSYN1_0872 4 QVGIVGLPNVGKSTLFNAITNSKVEAANYPFATIEPNVGIVEVPD 48
79**********************************998888776 PP
== domain 2 score: 2.3 bits; conditional E-value: 0.042
TIGR03156 271 lllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeele 320
++ v +sd e e + v++v + + ++ +v+ ++ ki++ +e+ +
MMSYN1_0872 201 PIIYVCNVSDTELLEDNDYVKKVRQFAEKSNSQVVKICAKIEEDLSEASK 250
47788888999999999999999888888888888888888765443333 PP
>> TIGR00437 feoB: ferrous iron transport protein B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.5 0.0 2.2e-10 7.5e-08 1 39 [. 9 47 .. 9 53 .. 0.90
2 ? -2.6 0.1 1.1 3.9e+02 190 215 .. 221 246 .. 179 276 .. 0.51
Alignments for each domain:
== domain 1 score: 29.5 bits; conditional E-value: 2.2e-10
TIGR00437 1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelk 39
G pNvGKstlfna+t+s+++ +N+p T+e g +e+
MMSYN1_0872 9 GLPNVGKSTLFNAITNSKVEAANYPFATIEPNVGIVEVP 47
77****************************999988765 PP
== domain 2 score: -2.6 bits; conditional E-value: 1.1
TIGR00437 190 kkglevleglleeraleiekiekela 215
kk + +e+ +++++ ++kie+ l
MMSYN1_0872 221 KKVRQFAEKSNSQVVKICAKIEEDLS 246
22222222222222222222211111 PP
>> TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.8 0.1 6.9e-09 2.4e-06 2 24 .. 4 26 .. 3 36 .. 0.88
2 ! 4.9 0.3 0.0074 2.6 46 151 .. 128 247 .. 121 273 .. 0.53
Alignments for each domain:
== domain 1 score: 24.8 bits; conditional E-value: 6.9e-09
TIGR03594 2 vvaivGrpNVGKStLfNrlvkkr 24
v ivG pNVGKStLfN +++++
MMSYN1_0872 4 QVGIVGLPNVGKSTLFNAITNSK 26
5889*************999987 PP
== domain 2 score: 4.9 bits; conditional E-value: 0.0074
TIGR03594 46 kgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdare.gl....teeDeeiaklLrksk....kpvilvvNKvdnk.....keeaeaae 129
+ e++l D ++++ d++ + ++ ++a e d++ +++d+ + g+ + Dee +lL+ ++ kp+i v+N +d++ + +++ +
MMSYN1_0872 128 INLELMLADQTTVKKRLDKILPKFKSGDKVAKVEYDLLNYLLDTLNkGIllnsLTLDEEQTDLLKSYQlltsKPIIYVCNVSDTEllednDYVKKVRQ 225
55666666666666666666666666666666666666666665441221111345666666666655555567777777666664321111122444 PP
TIGR03594 130 fyslGlgevlaiSaehgrgikd 151
f++ ++v++i a+ ++++++
MMSYN1_0872 226 FAEKSNSQVVKICAKIEEDLSE 247
4444444555555544444433 PP
>> TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.4 0.2 2.3e-08 8e-06 120 150 .. 4 33 .. 2 40 .. 0.83
2 ? 3.2 0.2 0.034 12 44 93 .. 195 247 .. 187 269 .. 0.77
Alignments for each domain:
== domain 1 score: 23.4 bits; conditional E-value: 2.3e-08
TIGR03596 120 ralvvGiPNvGKStliNrlakkkvakvgnkp 150
++ +vG+PNvGKStl N +++ kv +++n p
MMSYN1_0872 4 QVGIVGLPNVGKSTLFNAITNSKV-EAANYP 33
5679*************9999886.666666 PP
== domain 2 score: 3.2 bits; conditional E-value: 0.034
TIGR03596 44 elvknkprlivlnkaD...ladpektkkwlkyfeekgkkalavnakkkkkvkk 93
+l+++kp+++v n +D l d++ +kk ++ e+++++++ + ak ++++++
MMSYN1_0872 195 QLLTSKPIIYVCNVSDtelLEDNDYVKKVRQFAEKSNSQVVKICAKIEEDLSE 247
67899********9995544677777777777778899999888887777655 PP
>> TIGR00436 era: GTP-binding protein Era
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.7 0.1 7.6e-08 2.6e-05 2 25 .. 4 27 .. 3 37 .. 0.92
2 ? 1.1 0.1 0.15 50 71 121 .. 62 114 .. 53 167 .. 0.75
3 ? 1.1 0.4 0.14 48 83 134 .. 202 254 .. 178 269 .. 0.70
Alignments for each domain:
== domain 1 score: 21.7 bits; conditional E-value: 7.6e-08
TIGR00436 2 fvailGrpnvGKSTLlNkllgqki 25
+v+i+G pnvGKSTL N +++ k+
MMSYN1_0872 4 QVGIVGLPNVGKSTLFNAITNSKV 27
79******************9986 PP
== domain 2 score: 1.1 bits; conditional E-value: 0.15
TIGR00436 71 keirkalsevdlilfvvdsdeknkedellleklqklkapvvlalnkldnk..e 121
k + +++ vd+ ++ +++ ++ + l ++++++a +++ + d++ +
MMSYN1_0872 62 KRVATTIEFVDIAGLIAGASQGEGLGNAFLANIRQTDAICQVVRCFDDKEimH 114
67788889999999999999999997888888888888888887776665322 PP
== domain 3 score: 1.1 bits; conditional E-value: 0.14
TIGR00436 83 ilfvvdsdeknke.dellleklqklkapvvlalnkldnkekdkllelidkeas 134
i++v + ++++ d+ ++k+++ ++ + ++k+ k +++l e+ ++e++
MMSYN1_0872 202 IIYVCNVSDTELLeDNDYVKKVRQFAEKSNSQVVKICAKIEEDLSEASKEEKI 254
56777766665555777777777777777777777777655555554444433 PP
>> TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.5 0.1 7e-06 0.0024 19 45 .. 3 29 .. 1 42 [. 0.85
2 ? -0.2 0.2 0.45 1.6e+02 91 153 .. 191 255 .. 178 283 .. 0.59
Alignments for each domain:
== domain 1 score: 15.5 bits; conditional E-value: 7e-06
TIGR03598 19 peiafaGrSNvGKSsliNaLtnrkkla 45
++ ++G NvGKS+l Na+tn+k a
MMSYN1_0872 3 LQVGIVGLPNVGKSTLFNAITNSKVEA 29
58999*****************99544 PP
== domain 2 score: -0.2 bits; conditional E-value: 0.45
TIGR03598 91 ieeY.LekrenLkgvvllvDirhelkelD..lellellkeakipvlvvltKaDklkkselkkalkk 153
+++Y L +++ + v+ + D+ l+++D +++ +++++++ +v+ ++ K+ +++ k+++ +
MMSYN1_0872 191 LKSYqLLTSKPIIYVCNVSDTEL-LEDNDyvKKVRQFAEKSNSQVVKICAKIEEDLSEASKEEKIE 255
55554555555666666666655.444442256677777777777777777765444444444444 PP
>> TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.5 0.0 8.2e-06 0.0028 8 32 .. 3 27 .. 1 48 [. 0.85
2 ? -2.2 0.0 0.99 3.4e+02 334 389 .. 87 142 .. 81 146 .. 0.80
3 ? 2.1 0.8 0.046 16 107 160 .. 190 249 .. 166 274 .. 0.58
Alignments for each domain:
== domain 1 score: 14.5 bits; conditional E-value: 8.2e-06
TIGR03918 8 lhialfGrrNaGKSsliNaltgqdv 32
l+++++G N+GKS+l+Na+t+ +v
MMSYN1_0872 3 LQVGIVGLPNVGKSTLFNAITNSKV 27
689******************9887 PP
== domain 2 score: -2.2 bits; conditional E-value: 0.99
TIGR03918 334 gkdfpedlekyklvihCggCmlnrkemlsriekakekgvpitNYGvliaylkGiLe 389
g+ f +++++ + + + C ++ m+ + ++++i+N +++a + + +
MMSYN1_0872 87 GNAFLANIRQTDAICQVVRCFDDKEIMHVENSIDPIRDIEIINLELMLADQTTVKK 142
67788888899999999999888888887777777889999999999988776655 PP
== domain 3 score: 2.1 bits; conditional E-value: 0.046
TIGR03918 107 lleelk.ekkipvivvlnkidlkeeeke.....keklekkkeeevvlvsakekegieelk 160
ll++ + ++ p+i+v+n +d++ e++ ++ +k++++vv++ ak +e+++e
MMSYN1_0872 190 LLKSYQlLTSKPIIYVCNVSDTELLEDNdyvkkVRQFAEKSNSQVVKICAKIEEDLSEAS 249
333333134568888888888765443333333445555666666777666666665543 PP
>> TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.0 0.1 6.6e-06 0.0023 209 231 .. 2 24 .. 1 32 [. 0.91
2 ? -2.7 5.0 1.6 5.6e+02 334 404 .. 172 243 .. 103 280 .. 0.48
Alignments for each domain:
== domain 1 score: 15.0 bits; conditional E-value: 6.6e-06
TIGR00450 209 glklaivGktNvGKSSLlNallk 231
gl++ ivG +NvGKS L+Na+ +
MMSYN1_0872 2 GLQVGIVGLPNVGKSTLFNAITN 24
7899****************976 PP
== domain 2 score: -2.7 bits; conditional E-value: 1.6
TIGR00450 334 lkselkltvsllsakqlkikelvdlltek.inalyskekde..ldlalisssealillekaiaeleqlleklek 404
l++ + l++++l +q++ + +llt k i + ++ ++e +d+ +++ ++ +ek ++ ++ k+e+
MMSYN1_0872 172 LNKGILLNSLTLDEEQTDLLKSYQLLTSKpIIYVCNVSDTEllEDNDYVKKVRQ--FAEKSNSQVVKICAKIEE 243
444445555555555555555555554432222222211112112222222222..333333333333333333 PP
>> TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.3 0.1 2.3e-05 0.0078 158 181 .. 5 28 .. 2 42 .. 0.81
2 ? -2.8 0.0 1.9 6.5e+02 26 45 .. 95 116 .. 85 144 .. 0.64
3 ? -1.2 0.1 0.61 2.1e+02 89 121 .. 197 231 .. 177 268 .. 0.61
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 2.3e-05
TIGR03597 158 vyvvGvtNVGKSsliNkllklnkg 181
v +vG NVGKS+l N++ + + +
MMSYN1_0872 5 VGIVGLPNVGKSTLFNAITNSKVE 28
679***************976654 PP
== domain 2 score: -2.8 bits; conditional E-value: 1.9
TIGR03597 26 ekeevlCq..RCFrlkhYnele 45
++ +++Cq RCF k+ ++e
MMSYN1_0872 95 RQTDAICQvvRCFDDKEIMHVE 116
5566667666777544443333 PP
== domain 3 score: -1.2 bits; conditional E-value: 0.61
TIGR03597 89 vkenkvllvvNKid..llpksvklekikewlkkea 121
+ ++++++v N d ll ++ ++k++++ +k+
MMSYN1_0872 197 LTSKPIIYVCNVSDteLLEDNDYVKKVRQFAEKSN 231
55566666666544335666555555555554443 PP
>> TIGR00750 lao: LAO/AO transport system ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.5 0.0 0.00016 0.055 36 57 .. 4 25 .. 2 37 .. 0.88
2 ? -0.8 0.0 0.46 1.6e+02 178 228 .. 205 269 .. 193 286 .. 0.54
Alignments for each domain:
== domain 1 score: 10.5 bits; conditional E-value: 0.00016
TIGR00750 36 vvGltGvPGaGkstlvekliee 57
vG+ G+P +Gkstl ++++++
MMSYN1_0872 4 QVGIVGLPNVGKSTLFNAITNS 25
69***************99875 PP
== domain 2 score: -0.8 bits; conditional E-value: 0.46
TIGR00750 178 vvnkaDkeeaekerlarlelsldle..............elferekgWrPkvlktsavegrGike 228
v n +D e e++ ++++ + +++ +l e k+ + + lk ++++ G+++
MMSYN1_0872 205 VCNVSDTELLEDNDYVKKVRQFAEKsnsqvvkicakieeDLSEASKEEKIEFLKELGIKESGLDQ 269
55555555444444444333333333344444444444444444444444455555555555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (364 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 269 (0.0599376); expected 89.8 (0.02)
Passed bias filter: 165 (0.0367647); expected 89.8 (0.02)
Passed Vit filter: 30 (0.00668449); expected 4.5 (0.001)
Passed Fwd filter: 13 (0.00289661); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 13 [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2178.00
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0872 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0873 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0873.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0873/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0873 [L=66]
Description: PF06107 family protein 1=Unknown Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (66 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 75 (0.0167112); expected 89.8 (0.02)
Passed bias filter: 40 (0.00891266); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 498.84
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0873 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0874 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0874.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0874/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0874 [L=231]
Description: rsmG_gidB: 5=Equivalog rRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-61 204.3 8.1 3.7e-61 203.9 8.1 1.1 1 TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltran
8.8e-08 30.4 0.0 1.5e-07 29.7 0.0 1.3 1 TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarb
1.1e-06 26.2 0.0 2e-06 25.4 0.0 1.5 1 TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransfer
0.00013 19.4 0.1 0.00016 19.1 0.1 1.3 1 TIGR04290 meth_Rta_06860: methyltransferase, Rta_06860 famil
0.00027 18.8 0.1 0.00041 18.2 0.1 1.4 1 TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransfe
0.0016 15.5 0.1 0.0063 13.6 0.0 1.8 2 TIGR00536 hemK_fam: methyltransferase, HemK family
------ inclusion threshold ------
0.012 12.4 0.1 0.021 11.6 0.1 1.4 1 TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase
Domain annotation for each model (and alignments):
>> TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 203.9 8.1 5.7e-64 3.7e-61 1 174 [. 24 198 .. 24 210 .. 0.96
Alignments for each domain:
== domain 1 score: 203.9 bits; conditional E-value: 5.7e-64
TIGR00138 1 lkqylellqkwNkriNLtslkeeeelierhlldslkllellkeskkkviDiGsGaGfPGiplallrpelkltLlesnkKkvaFLkevkkeLglenvei 98
l+ y+++l++ N+++NLt++++ +e++e+h+ldsl ++e+++++++k++DiG+GaGfPG++l++++p++kltL+esn+Kk +FLk+++++L+l++vei
MMSYN1_0874 24 LNLYYQILIQENQKYNLTRITQLNEVFEKHFLDSLLFVEQFQIIDQKIADIGTGAGFPGVVLKIFFPNIKLTLIESNNKKANFLKYLVQKLELNDVEI 121
578*********************************************************************************************** PP
TIGR00138 99 lkarvek.keeeekfdvitsralaslnellelalkllkvgGvilalKGkkleeEieekkekiqklkvevlevkslee 174
l++rve+ +e++e+fd+++sra+a l+ +lel +l+kv G++++lKG+k ++Ei++ k+k qk++++ +++++le
MMSYN1_0874 122 LNKRVEElNEYKEQFDIVISRAVAYLDIILELGVQLVKVDGMFILLKGPKAHQEIKDLKNKDQKMNLKLVNIQELED 198
*******999************************************************************9999876 PP
>> TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.7 0.0 2.3e-10 1.5e-07 16 118 .. 65 164 .. 58 167 .. 0.83
Alignments for each domain:
== domain 1 score: 29.7 bits; conditional E-value: 2.3e-10
TIGR02469 16 rlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdapkaeedsleeadavfvgGsgkklkeileaverrlr 113
++ ++++ DiG G+G+ ++ + +p+++++ ie n++++++++ +++++++++ei+++ +++ +e e++d+ +++ + + l+ ile + ++
MMSYN1_0874 65 QII-DQKIADIGTGAGFPGVVLKIFFPNIKLTLIESNNKKANFLKYLVQKLELNDVEILNKRVEELNEY-KEQFDI-VISRAVAYLDIILELGVQLVK 159
555.789******************************************************99977777.677875.566667777777777777777 PP
TIGR02469 114 pggri 118
+ g+
MMSYN1_0874 160 VDGMF 164
66665 PP
>> TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.4 0.0 3.1e-09 2e-06 90 162 .. 69 141 .. 27 142 .. 0.92
Alignments for each domain:
== domain 1 score: 25.4 bits; conditional E-value: 3.1e-09
TIGR03534 90 lkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdllealeekgkfdlivs 162
k++D+gtG G+ ++ l+ +p++k+++++ +++ ++ + +++l+l++ve+l+ + e e k++fd+++s
MMSYN1_0874 69 QKIADIGTGAGFPGVVLKIFFPNIKLTLIESNNKKANFLKYLVQKLELNDVEILNKRVEELNEYKEQFDIVIS 141
68******************************************************99655588*******98 PP
>> TIGR04290 meth_Rta_06860: methyltransferase, Rta_06860 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.1 0.1 2.5e-07 0.00016 50 127 .. 68 147 .. 28 221 .. 0.80
Alignments for each domain:
== domain 1 score: 19.1 bits; conditional E-value: 2.5e-07
TIGR04290 50 GksvldiGcnaGfysielkrrg.aervvgidsdarylaqarfaaevlg.adiefrklsvydvekleekfdlvlflGvlyh 127
+++ diG aGf + lk +++ i+s+++ + ++ ++l +d+e+ ++ v ++++++e+fd+v+ v y
MMSYN1_0874 68 DQKIADIGTGAGFPGVVLKIFFpNIKLTLIESNNKKANFLKYLVQKLElNDVEILNKRVEELNEYKEQFDIVISRAVAYL 147
57899*********999997641458999*******************778**********************9999885 PP
>> TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.2 0.1 6.4e-07 0.00041 29 132 .. 63 166 .. 44 228 .. 0.77
Alignments for each domain:
== domain 1 score: 18.2 bits; conditional E-value: 6.4e-07
TIGR02072 29 ekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.....nvqficgdieklplekksfDlivSnlalQWlddlsevlaela 121
+ ++ ++k+ diG G G+ l+ fp+ +l+++ +++ +++k ++ v+++ + +e+l+ k++fD+++S ++ l+ +l+
MMSYN1_0874 63 QF-QIIDQKIADIGTGAGFPGVVLKIFFPNIKLTLIESNNKKANFLKYLVQklelnDVEILNKRVEELNEYKEQFDIVISRAV----AYLDIILELGV 155
22.67789************************************9999999999999***********************886....34555555555 PP
TIGR02072 122 rvlkpgGllaf 132
+++k +G++++
MMSYN1_0874 156 QLVKVDGMFIL 166
55555665555 PP
>> TIGR00536 hemK_fam: methyltransferase, HemK family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.6 0.0 9.8e-06 0.0063 116 188 .. 69 141 .. 47 143 .. 0.87
2 ? -0.6 0.0 0.2 1.3e+02 226 277 .. 150 205 .. 144 212 .. 0.71
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 9.8e-06
TIGR00536 116 khilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnlleslakq.kidlivs 188
++i D+gtG G ++ l +pn++++ + ++ + + ++kl+l++ ve++ +++ e + + ++d+++s
MMSYN1_0874 69 QKIADIGTGAGFPGVVLKIFFPNIKLTLIESNNKKANFLKYLVQKLELND-VEILNKRVEELNEYKeQFDIVIS 141
79***********************************************8.****9998554433359**9998 PP
== domain 2 score: -0.6 bits; conditional E-value: 0.2
TIGR00536 226 iieqakeylksngvlllEignsqqkelkellrkk....fkiadvelkkdlsgkeRv 277
i+e+ +++k +g+++l g++ +e+k+l +k k ++++ +d +Rv
MMSYN1_0874 150 ILELGVQLVKVDGMFILLKGPKAHQEIKDLKNKDqkmnLKLVNIQELEDTGFGTRV 205
77777788888999999999999999999887765555555666666666655555 PP
>> TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.6 0.1 3.3e-05 0.021 117 195 .. 67 146 .. 60 167 .. 0.75
Alignments for each domain:
== domain 1 score: 11.6 bits; conditional E-value: 3.3e-05
TIGR00452 117 kgrkvlDvGcgnGYhlwrmlgagaklvvg.idPsllflvqfkavkkllgeakvellplgieelpeklkafDtvfsmGvlY 195
++k+ D+G+g G+ + +++ + i+ + + k + + l+ + ve+l ++eel+e +++fD v+s v Y
MMSYN1_0874 67 IDQKIADIGTGAGFPGVVLKIFFPNIKLTlIESNNKKANFLKYLVQKLELNDVEILNKRVEELNEYKEQFDIVISRAVAY 146
57899********976655555555544414555444444455666677889***********************99998 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (231 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 281 (0.0626114); expected 89.8 (0.02)
Passed bias filter: 97 (0.0216132); expected 89.8 (0.02)
Passed Vit filter: 11 (0.00245098); expected 4.5 (0.001)
Passed Fwd filter: 7 (0.00155971); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1658.63
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0874 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0875 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0875.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0875/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0875 [L=198]
Description: pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 5=Equivalog Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-50 169.2 16.0 3.3e-50 169.1 16.0 1.0 1 TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-p
8.2e-08 30.5 1.6 1.8e-07 29.3 1.0 1.9 1 TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltran
Domain annotation for each model (and alignments):
>> TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 169.1 16.0 1.5e-53 3.3e-50 2 179 .. 7 196 .. 6 198 .] 0.94
Alignments for each domain:
== domain 1 score: 169.1 bits; conditional E-value: 1.5e-53
TIGR00560 2 kipnklTlvRiialpllillllen........vlslqvslliggllfliaavtDylDGylARkyklvsnfGkllDPlaDkvlvlavliilvykglvpa 91
++pn lT +Ri+++p++i+lll + + +++ + +i+g +f+ia++tD+lDG++ARky+lv+nfGk++DP+aDk+lv+a+li + g++p+
MMSYN1_0875 7 NLPNILTTIRILLVPIIIVLLLVDhymnglvfTNFSKFAWFISGAIFIIASLTDFLDGWIARKYNLVTNFGKFFDPIADKLLVNATLILFSSLGVLPI 104
89************99988877667****998888899999********************************************************* PP
TIGR00560 92 llliviiaRelvisglRvlaaekgkeviaanllGKlKtvaqivaiaalllysln.....fklvvlliaqllyyiAavltllSfleYllkilks 179
++++v+i+R+ +i+++R+++ kg + aa + GKlKt+ q++++++l++ +l+ + +++ +++yiA++++++S+++Y+lk++++
MMSYN1_0875 105 WMTVVLILRDTFIDFIRMILSSKG-ITLAAGMGGKLKTTFQMIGLSLLFFINLKifgwsEWDWQNQLVLIPMYIATFFSIYSGVIYFLKARSN 196
***********************8.99**************************998875445677899********************99876 PP
>> TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.3 1.0 8.1e-11 1.8e-07 23 61 .. 49 87 .. 29 132 .. 0.76
Alignments for each domain:
== domain 1 score: 29.3 bits; conditional E-value: 8.1e-11
TIGR00473 23 avllillslilDslDGrvArktntvskfGkelDSlaDvv 61
+ ++++++ + D+lDG++Ark n v +fGk +D +aD +
MMSYN1_0875 49 SGAIFIIASLTDFLDGWIARKYNLVTNFGKFFDPIADKL 87
44455666689**************************65 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (198 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 191 (0.0425579); expected 89.8 (0.02)
Passed bias filter: 60 (0.013369); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1421.68
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0875 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0876 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0876.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0876/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0876 [L=526]
Description: amino acid permease 2=Generic Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-07 28.1 21.4 1.7e-07 28.1 21.4 2.0 2 TIGR00911 2A0308: L-type amino acid transporter
------ inclusion threshold ------
3.9 5.6 12.5 5.3 5.1 0.1 4.1 3 TIGR01495 ETRAMP: early transcribed membrane protein (ETRAMP
Domain annotation for each model (and alignments):
>> TIGR00911 2A0308: L-type amino acid transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.1 21.4 7.4e-11 1.7e-07 48 293 .. 8 268 .. 2 277 .. 0.76
2 ? -3.5 3.1 0.27 6.1e+02 152 192 .. 333 372 .. 297 401 .. 0.56
Alignments for each domain:
== domain 1 score: 28.1 bits; conditional E-value: 7.4e-11
TIGR00911 48 itllsgvsiivgtiiGsGiFvspkgvlkeagsvGlalivWavtgilsivGalvYaElGttipksGGeya..Yllevf..gklkaFlklwiellvirpg 141
+ l ++ +g ++G+G++ k +l ++ + +a+i+W++ g + ++ ++ + E+ + +k+GG + ++f +k+ F +++ +++ +
MMSYN1_0876 8 LEFLTLFAMTIGSVVGAGVYFKNKEILFDTRNPIIAIILWIIVGSVCVSMVYLFLEIASS-TKNGGSGTigVWTKLFinRKVGSFFAILNAFFYLPVM 104
5667778999**********************************************9877.6777765421334444227888999998888777666 PP
TIGR00911 142 saavvalvfatylLkPvfadcevpelairlv....avlvvllltlvnslsvklatrvqdiltaakllallliiilGlvqlgk......geveslepkn 229
+++ +++ f t++L +f + + + l+ +++ +++ l+n ++ +++ + q + t++k l++ i G+v + + g+++ +p
MMSYN1_0876 105 QSMFISF-FITFILM-MFSTVQLKGIHFLLIflttGIAIIIINALINVFDLSISRKYQAFGTIFKFIPLAIALIAGVVLFDQngaflsGGINITNPTG 200
6666664.4455555.5777666666554443332788888999**********************************88777678889999999988 PP
TIGR00911 230 aFegte.asvgelvlalysg....lfaygGwnylnfvteEvknPvr.tlpiaiiislvivtlvYvltniA 293
+ e ++ +l +++g lfa+ G+ ++ k ++ +p a i + +v++ Y l+ +
MMSYN1_0876 201 GTSKVEwSTNNFNPLLFFRGfggiLFAFDGFIFICNSQR--KAKYKdVVPKALIFGMIFVSVFYTLIAVS 268
8888884333334566666533337******99865544..44455158****************99886 PP
== domain 2 score: -3.5 bits; conditional E-value: 0.27
TIGR00911 152 tylLkPvfadcevpelairlvavlvvllltlvnslsvklat 192
++ ++ ++ +++++ +a++ v ++t++ s+ + ++t
MMSYN1_0876 333 SDVIDKLYLTS-QKNISAKRIAIIQVSVATAIYSTFILVGT 372
22333333333.34455566666666666666666555554 PP
>> TIGR01495 ETRAMP: early transcribed membrane protein (ETRAMP) family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.1 0.1 0.0023 5.3 59 79 .. 12 32 .. 9 34 .. 0.89
2 ? 3.6 3.0 0.0068 15 2 62 .. 302 364 .. 301 381 .. 0.79
3 ? -0.2 0.4 0.11 2.4e+02 39 49 .. 426 435 .. 405 474 .. 0.55
Alignments for each domain:
== domain 1 score: 5.1 bits; conditional E-value: 0.0023
TIGR01495 59 sglallvgaavGlglylkkkn 79
++ a+ +g+ vG g+y+k+k+
MMSYN1_0876 12 TLFAMTIGSVVGAGVYFKNKE 32
567999*************96 PP
== domain 2 score: 3.6 bits; conditional E-value: 0.0068
TIGR01495 2 Kvskilyllaillainliapglcnngkvekkgkilkklekaekkk.rnkklilyS.siasgla 62
+v +il+ + i++++ + a +l ++v +++ kl +k k++ ++ s+a+++
MMSYN1_0876 302 RVANILTSVIIIIICSIGANNLSYVSFVVIESDVIDKLYLTSQKNiSAKRIAIIQvSVATAIY 364
799****************************99****99998888767777666635555553 PP
== domain 3 score: -0.2 bits; conditional E-value: 0.11
TIGR01495 39 lekaekkkrnk 49
+k e +k +k
MMSYN1_0876 426 TNKVEVEK-KK 435
22333333.23 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (526 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 407 (0.0906863); expected 89.8 (0.02)
Passed bias filter: 70 (0.0155971); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 4 (0.000891266); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 3284.17
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0876 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0877 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0877.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0877/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0877 [L=226]
Description: membrane protein, putative 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (226 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 241 (0.0536988); expected 89.8 (0.02)
Passed bias filter: 45 (0.0100267); expected 89.8 (0.02)
Passed Vit filter: 3 (0.000668449); expected 4.5 (0.001)
Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1622.73
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0877 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0878 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0878.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0878/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0878 [L=497]
Description: amino acid permease 2=Generic Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-09 34.7 30.7 1.4e-07 28.4 30.7 2.4 1 TIGR00911 2A0308: L-type amino acid transporter
------ inclusion threshold ------
6.1 5.0 8.4 10 4.3 0.9 3.5 3 TIGR03141 cytochro_ccmD: heme exporter protein CcmD
Domain annotation for each model (and alignments):
>> TIGR00911 2A0308: L-type amino acid transporter
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.4 30.7 6e-11 1.4e-07 58 294 .. 3 247 .. 1 485 [. 0.87
Alignments for each domain:
== domain 1 score: 28.4 bits; conditional E-value: 6e-11
TIGR00911 58 vgtiiGsGiFvspkgvlkeagsvGlalivWavtgilsivGalvYaElGttipksGGeyaYllevfgklkaFlklwiellvirpgsaavvalvfatylL 155
vgti+GsGi+v +l e+ + +a+++W++ gi i ++ + E+ + +k+G ++ ++ fg+ ++ + p ++a+ + ++ y+L
MMSYN1_0878 3 VGTIVGSGIYVKNRDILIETHNPIIAIVLWTAVGISCIAVVYLFLEISSS-TKNGTIGSWSRAFFGHKVGSFFANFQTMFYAPVNQAIFTSALLSYFL 99
8**************************************99999**9765.89*************9876666667778899**************** PP
TIGR00911 156 kPvfadcevpe..lairlvavlvvllltlvnslsvklatrvqdiltaakllallliiilGlvqlgk........geveslepknaFegteasvgelvl 243
+ + ++ + l lv+++ +ll ++n +s+k + vq++ t +k l++ G++ +v+ + +++ + + +
MMSYN1_0878 100 NIFDIKLYGYQylLIFLLVGAIIILLTNILNVFSIKGSKAVQIFGTGFKFFPLIIALFAGFILADHfgalqnngVDVRGIDATKSWTKHDFDPLLFFR 197
*555555444411455789******************************9999888888887543343454444678889999*************** PP
TIGR00911 244 alysglfaygGwnylnfvteEvknPvrtlpiaiiislvivtlvYvltniAY 294
++ lfa+ G+ y+ + k + +pia + ++++ ++ Y++ i
MMSYN1_0878 198 GFGGILFAFDGFIYICNSKKRAK-HQDVVPIALVSAMAFAAVFYLIMSISL 247
**************988776665.46789***************9998865 PP
>> TIGR03141 cytochro_ccmD: heme exporter protein CcmD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.3 0.9 0.0045 10 11 26 .. 32 47 .. 30 54 .. 0.85
2 ? -3.2 0.4 1 2.3e+03 12 20 .. 335 343 .. 334 346 .. 0.70
3 ? 3.7 0.0 0.007 16 16 40 .. 384 408 .. 381 411 .. 0.86
Alignments for each domain:
== domain 1 score: 4.3 bits; conditional E-value: 0.0045
TIGR03141 11 WlaYgitalvLagliv 26
W+a+gi++++++ l +
MMSYN1_0878 32 WTAVGISCIAVVYLFL 47
***********98755 PP
== domain 2 score: -3.2 bits; conditional E-value: 1
TIGR03141 12 laYgitalv 20
++Y+i a+
MMSYN1_0878 335 ISYAIFAIF 343
688888764 PP
== domain 3 score: 3.7 bits; conditional E-value: 0.007
TIGR03141 16 italvLaglivwslldrrrllrelr 40
++++++a liv l+ r++ + e++
MMSYN1_0878 384 LSFAMMASLIVAALVNRKTNKVEVK 408
79*************9998777766 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (497 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 332 (0.073975); expected 89.8 (0.02)
Passed bias filter: 82 (0.0182709); expected 89.8 (0.02)
Passed Vit filter: 8 (0.00178253); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 3244.15
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0878 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0879 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0879.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0879/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0879 [L=885]
Description: putative magnesium-importing ATPase 2=Generic Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-175 583.2 37.2 2.2e-175 582.9 37.2 1.0 1 TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATP
1.1e-96 322.7 28.8 1.4e-96 322.3 28.8 1.1 1 TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-typ
8.9e-80 266.5 35.5 1.3e-79 265.9 35.5 1.2 1 TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase
1.1e-71 240.0 18.3 5.9e-44 148.3 3.3 2.5 2 TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPas
1.8e-59 199.4 43.0 2.2e-27 93.6 1.5 5.5 4 TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
2.7e-57 192.8 6.7 1.7e-34 117.6 0.5 2.2 2 TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type AT
3.1e-55 185.7 37.2 2e-54 183.1 37.2 1.9 1 TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase
7.9e-44 147.7 40.2 7.7e-29 98.1 9.1 4.6 4 TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, a
3.3e-41 139.7 12.4 8.5e-18 62.4 1.3 3.3 3 TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
3.4e-41 138.7 46.6 3.9e-21 72.3 17.1 3.9 3 TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specific
1.1e-40 137.7 10.0 9.4e-18 62.1 0.8 3.6 3 TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
3.3e-40 135.5 39.6 2.4e-23 79.7 5.9 3.7 4 TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type AT
9.6e-21 71.4 12.8 9.6e-21 71.4 12.8 2.6 2 TIGR01497 kdpB: K+-transporting ATPase, B subunit
8.8e-09 31.6 51.7 0.00079 15.2 0.1 5.0 5 TIGR01652 ATPase-Plipid: phospholipid-translocating P-type A
0.00016 19.3 6.0 0.00027 18.5 3.0 2.7 3 TIGR00338 serB: phosphoserine phosphatase SerB
0.00093 17.2 0.5 0.0021 16.0 0.5 1.6 1 TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydr
Domain annotation for each model (and alignments):
>> TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 582.9 37.2 7.7e-178 2.2e-175 7 867 .] 15 884 .. 10 884 .. 0.91
Alignments for each domain:
== domain 1 score: 582.9 bits; conditional E-value: 7.7e-178
TIGR01524 7 klserllkaaameketllrkldsheeGltaaevterlkkyGenevaeekkspalvqllrafnnpfiyvlailagvsylt........edleavviial 96
k+++ ++k ++++ ++l +lds + Gl+++ ++ k+G n+++ +k + ++l++ +pf+++l ++ + + l ++ ii
MMSYN1_0879 15 KKQDYVIKLSNTNSNNLESILDS-KIGLNNQTRQNNISKFGSNQIVVKK-FLIFKKILETLIEPFNLLLLFIGILELIIyflfqrnwITLISAFIIFF 110
45677889999999999998887.68*******************9876.568999************998888777777778998878999****** PP
TIGR01524 97 mvslsgllrfvqearaeraadalkkmvkntatvlrvi.....nenieaaleev...pidelvpGdviklaaGdlipadvrviaardlliaqsaltGes 186
m+ l+++++f+qe +a + l k+++n + v+ n n ++ ++++ + +l Gdv+ l+ Gd+ip+d r+i + dl++ +s+ltGes
MMSYN1_0879 111 MIFLASIVDFIQEYKAYKFNLKLTKIIENDVFVVNDQikdfnNLNYQNIKNNLikeKQSNLTIGDVVYLSKGDIIPSDCRIIWSEDLYLDESTLTGES 208
*******************************9987431111133444555544111566899************************************ PP
TIGR01524 187 lpvekvaatkeakdkellelenlllmGtnvvsGraqavvlatGsstffGslakavsedreqtafdkGvksvskllirfmlvmvpvvllinGlskG..d 282
++k +++ ++ + lelen+l+ t +vsG++ avv++ + sl + +d+ t ++kG+++v+k+li+++ ++v ++ +i l G +
MMSYN1_0879 209 KAIKKQTTNTKT---NFLELENILFKETLIVSGNCLAVVININKDNYSNSLLDLI-DDEVITDYEKGINKVTKILIYLISILVFIITFISLLKTGisN 302
***998877666...9**********************************98765.6778899**************************999988779 PP
TIGR01524 283 wleaalfalavavGltpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkivlekhldvsGkkservlklaylnssfqt 380
w + +f l++av ltpe lp i+ssnl + +lsk+kv++k+l+ +qn+G+++il tdktGtlt d +e +ld+ +k + +++ + n++fq
MMSYN1_0879 303 WTSSLVFGLSIAVSLTPEALPAIISSNLKLASKRLSKNKVVIKKLSVLQNIGSVNILATDKTGTLTLDTTNIETYLDINNQKNKLLMQYFFYNAYFQN 400
************************************************************************************************** PP
TIGR01524 381 GlknvldravlekvdesiarstkarfkkvdeipfdferrrlsvvveeaaevrrlickGaveelltvathlreggavvalsesekeelkavteelnrqG 478
l + +d+a++++ + + + k +d + fd + r sv+++ ++ + li+kG++ee+l +++ ++ +++v+ l ++ k+ + ++++ + ++G
MMSYN1_0879 401 NLFDTIDKAIIDQFKTN-----ISDIKLIDHLSFDHNFRISSVLINFNSS-NLLITKGSLEEILEITSFINVNNQVINLCDNYKNMIIDQVNSYTKKG 492
***********999888.....578899*********9999999987776.89********************************************* PP
TIGR01524 479 lrvvavatkklkaseadlskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGidandvllGadieelsdeelaae 576
+v+++++k+ ++ +d+++li G++ f d +e k+ i ++k+ +i +kvl+Gdn ++++c +vGi++n l+G +i++l+ eel +
MMSYN1_0879 493 YKVLVLSYKNSDV-------IDNKNLIYLGMVVFSDQIRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVCDQVGINSNTSLIGKQINNLTKEELIKI 583
********98765.......6779************************************************************************** PP
TIGR01524 577 vekravfarltplqkerivtllkkeGhtvGflGdGindapalrkadvGisvdsaadiakeasdiillekslmvleegvieGretfgnilkylkmtass 674
+ ++f +l+pl+k +i++ lk + +vGflGdG+nda al+kadvGisv+ a +ak+++d+illek+l le++ i Gr+tf+n +ky+k+t +s
MMSYN1_0879 584 SQSVNIFYKLSPLDKAKIIDSLKSN-NVVGFLGDGVNDAVALKKADVGISVNNASSLAKQSADVILLEKDLNALEHAFIIGRKTFSNAIKYIKITVAS 680
**********************976.79********************************************************************** PP
TIGR01524 675 nfgnvfsvlvasafipflpmlalhlliqnllydvsqlalpfdkvdkeflkkprkweakdlgrfllfiGpvssifdiatfllmwyvfaantveeqa..l 770
nfg ++++l+a+++ f m ++ lliqnl++d+++l + fd+vd++ +kkp+kw+ k + f +f G + i + f+++++ f+ ++ + l
MMSYN1_0879 681 NFGILLTLLLATSLFKFEVMSPIQLLIQNLIFDFANLVFVFDNVDESSIKKPQKWNIKSIIPFAIFNGLTQVIISFINFMILYFGFNIKGLDTYSieL 778
***************************************************************************************99988765339 PP
TIGR01524 771 fqsGwfvvGllsqtlvvhmirtekipfiqsraalpvllatllv.....mavGiiipfsplgasvglealplsyfpwliailvgy....mlvaqlvkrf 859
fq+ +f++ +l+ +++ ++rt+k+ f +s a+ +l+ l m+v i+ f +lg + + ++ + w +il g ++ +l+k++
MMSYN1_0879 779 FQTCYFIECILTHIMIILVLRTDKLSFFKSIASKQMLISMLFFsvvcfMIVFISSSFNSLGFKMMIGNFNNINLSWWFLILFGLeilsWIISELIKKI 876
*********************************99999877541112266666667778887777777777778888888887621113567899999 PP
TIGR01524 860 yirrfgew 867
y f++w
MMSYN1_0879 877 YLIIFKNW 884
99888877 PP
>> TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 322.3 28.8 5e-99 1.4e-96 1 752 [. 40 828 .. 40 831 .. 0.87
Alignments for each domain:
== domain 1 score: 322.3 bits; conditional E-value: 5e-99
TIGR01647 1 GLsseeakkrlkkyGpneleekkeskllkFlsflwnPlswvleiAaiiaialen........weDfviilallllnatigfieeskAgnaveaLkksl 90
GL+++ ++ + k+G n++ kk + k l+ l++P++++l i++ ++ ii +++l + + fi+e+kA + L k +
MMSYN1_0879 40 GLNNQTRQNNISKFGSNQIVVKKFLIFKKILETLIEPFNLLLLFIGILELIIYFlfqrnwitLISAFIIFFMIFLASIVDFIQEYKAYKFNLKLTKII 137
8999999*********************************999988888887556667833333456899999**************99999999999 PP
TIGR01647 91 apkakvlRdg.......kwqele.......akelvpGDvvalklGdivpaDvklvegdklkvDqaaltGEslpvekkl..........gdiaysgsvv 164
++ + v+ d ++q+++ ++l +GDvv l Gdi+p+D++++ ++l +D+++ltGEs +++k++ ++i + +
MMSYN1_0879 138 ENDVFVVNDQikdfnnlNYQNIKnnlikekQSNLTIGDVVYLSKGDIIPSDCRIIWSEDLYLDESTLTGESKAIKKQTtntktnflelENILFKETLI 235
9988888774333333345555411111115789*****************************************98722222222224578999*** PP
TIGR01647 165 kkGEveavvvatGvntffGkaakLveeaekesghlqkilskigavlivlilvlvliellvellkr.keslreslqfalvllvagiPialpvvlsvtlA 261
G++ avv+ ++ + L+++ +++++k ++k+ ++li li +lv i+ +++llk+ ++ ++sl f l + v+ P alp+++s l
MMSYN1_0879 236 VSGNCLAVVININKDNYSNSLLDLIDDEV--ITDYEKGINKVTKILIYLISILVFIITFISLLKTgISNWTSSLVFGLSIAVSLTPEALPAIISSNLK 331
*************************9877..889*****************9998877776665515789999************************* PP
TIGR01647 262 vGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideelivkeeldkedvlllaalas..reedkdaidtavlkkladlkealekykele 357
+ +k+L+k+k+++kkls + ++ +v+iL DktGtltl+ +i++ l +++ +++ ++ + ++ + +++ d+id+a+++ + k++++++k ++
MMSYN1_0879 332 LASKRLSKNKVVIKKLSVLQNIGSVNILATDKTGTLTLDTTNIETYLDINN-QKNKLLMQYFFYNAyfQNNLFDTIDKAIID---QFKTNISDIKLID 425
********************************************9999999.777888999999996666777*******99...5666789****** PP
TIGR01647 358 fvpfdpvekrteatledeetgkkfkvtkGapqvildlvkekkeieee...........veekveelAerGlRaLgvava....dekgewellgllpll 440
++ fd + + ++ ++ ++ +tkG+ + il+ ++ + ++++ + ++v+++ ++G++ L ++++ ++++ lg++ +
MMSYN1_0879 426 HLSFDHNFRISSVLINFNS--SNLLITKGSLEEILEITSFIN-VNNQvinlcdnyknmIIDQVNSYTKKGYKVLVLSYKnsdvIDNKNLIYLGMVVFS 520
*****99998888887776..679*********999765433.3333355678888889999***************99777767899999******* PP
TIGR01647 441 DPPreDtketierakelgvevkmvtGDhlaiaketarrlglgtniltaekllkkkkedklkseeleelvekadGFAevfPeHkyeivealqkrghlvg 538
D re+ k+ i++ k++ +++k++ GD+l k+++ ++g+++n +l+ k+ + +l++eel ++ ++++ F ++ P k +i+++l+++ +vg
MMSYN1_0879 521 DQIRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVCDQVGINSNT----SLIGKQIN-NLTKEELIKISQSVNIFYKLSPLDKAKIIDSLKSN-NVVG 612
****************************************99875....55555444.5677789999**********************876.69** PP
TIGR01647 539 mtGDGvnDaPaLkkAdvGiAvagAtDAArsaaDivltepGlsviveAikesRkiFqRmksyviYrvaltlrivvflallililkfk.lpvllvvllal 635
GDGvnDa aLkkAdvGi v++A A+ +aD++l+e l ++ +A + Rk F +y+ +va + i+++l l++ ++kf+ ++++ +++ l
MMSYN1_0879 613 FLGDGVNDAVALKKADVGISVNNASSLAKQSADVILLEKDLNALEHAFIIGRKTFSNAIKYIKITVASNFGILLTLLLATSLFKFEvMSPIQLLIQNL 710
**************************************************************************************99********** PP
TIGR01647 636 lnDgtiltiakDrvkps..kkPekWnlkevflvaivlglilvvstllllalaldtsffedkvllelkkeelqsllylkvsisgqllifvtRtkgfsfv 731
+ D + l D+v +s kkP+kWn+k+++ ai+ gl++v+ +++ +++++ + f+ k+l + + e q+ +++ ++++ ++i+v Rt + sf+
MMSYN1_0879 711 IFDFANLVFVFDNVDESsiKKPQKWNIKSIIPFAIFNGLTQVIISFINFMILYFG--FNIKGLDTYSIELFQTCYFIECILTHIMIILVLRTDKLSFF 806
**************9885579**************************99887744..6666666777888999*********************9999 PP
TIGR01647 732 er.pgkllliavviaqivatli 752
+ ++k++li++++ ++v +i
MMSYN1_0879 807 KSiASKQMLISMLFFSVVCFMI 828
988********99999888776 PP
>> TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 265.9 35.5 4.7e-82 1.3e-79 19 847 .. 36 874 .. 18 878 .. 0.81
Alignments for each domain:
== domain 1 score: 265.9 bits; conditional E-value: 4.7e-82
TIGR01522 19 dlenGlsssqevsrrrklhGsnelkveeeesllkkflsqfvkd.plillllasa.vvsvll..gniddavs...itlailivvtvgfvqeyrseksle 109
d + Gl+ +q ++ + +Gsn++ v++ ++kk l+ +++ +l+ll+++ + +l n+ +s i + i++ v f+qey++ k
MMSYN1_0879 36 DSKIGLN-NQTRQNNISKFGSNQIVVKK-FLIFKKILETLIEPfNLLLLFIGILeLIIYFLfqRNWITLISafiIFFMIFLASIVDFIQEYKAYKFNL 131
5667888.44445555668****98875.6899*******98724555555543233333311344444442226778889999***********999 PP
TIGR01522 110 alnklvpaechliraG.......keehv...l....asklvpGdlvelsvGdrvpadlriveavdlsidesnltGettpvkks.seaiealaersnia 192
+l+k++ +++ ++ + +++ l s+l Gd+v ls Gd +p+d+ri+ + dl +des+ltGe++ +kk+ +++ +++ e +ni
MMSYN1_0879 132 KLTKIIENDVFVVNDQikdfnnlNYQNIknnLikekQSNLTIGDVVYLSKGDIIPSDCRIIWSEDLYLDESTLTGESKAIKKQtTNTKTNFLELENIL 229
9***9999998876431111111122221112122257899**************************************99862678999******** PP
TIGR01522 193 ymGtlvreGkgkGivvgtGsntefGavfemmqeiekpktplqksmdklGkdlslvsfivigvivlvGllqG..kdwlemftisvslavaaipeGlpii 288
+ tl+ +G++ +v+ ++ ++ ++++++ t +k ++k+ k l ++ i + +i ++ ll+ +w + ++s+av+ pe lp i
MMSYN1_0879 230 FKETLIVSGNCLAVVININKDNYSNSLLDLIDDE--VITDYEKGINKVTKILIYLISILVFIITFISLLKTgiSNWTSSLVFGLSIAVSLTPEALPAI 325
*********************9999999999875..5699***********998888888999999999853579*********************** PP
TIGR01522 289 vtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtkiytvdklaalslktvavekilkvgalcnnakvkneaasllgkptdva 386
++ l l r+sk+k +++kl +++ +Gsvn++ +dktGtlt + + t l+ ++ ++ l + + na ++n+ l +++d a
MMSYN1_0879 326 ISSNLKLASKRLSKNKVVIKKLSVLQNIGSVNILATDKTGTLTLDTTNIE---TY-------LDINNQKNKLLMQYFFYNAYFQNN----LFDTIDKA 409
*******************************************8754443...32.......3333456778889999*******9....5667999* PP
TIGR01522 387 liellekfgledlretvkrvaevpfsserkymavkvltdskkivfvkGateqvleyctsylkkdGkteklteeqkekiqeeaaemaseGlrvlalask 484
+i++ + +++d k + ++f+ + + +v + +s+++ kG+ e++le ts+ + + + +l ++ k+ i ++ ++ +++G +vl l++k
MMSYN1_0879 410 IIDQFK-TNISD----IKLIDHLSFDHNFRISSVLINFNSSNLLITKGSLEEILEI-TSFINVNNQVINLCDNYKNMIIDQVNSYTKKGYKVLVLSYK 501
**9864.45555....568999********************************97.67888899******************************998 PP
TIGR01522 485 t.....ekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGlavksskeGekldelddqqlsevvdkvavfaraspehkl 577
+ +k+l+++G++ + d r +vk+ ++++ + + +++++Gd t +++ ++G+++ +s G+++++l +++l ++ + v++f++ sp +k
MMSYN1_0879 502 NsdvidNKNLIYLGMVVFSDQIRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVCDQVGINSNTSLIGKQINNLTKEELIKISQSVNIFYKLSPLDKA 599
533333799***************************************************************************************** PP
TIGR01522 578 kivkalqkrGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnniknfitfqlstsvaal.slvalatvl 674
ki+ +l+++ +vv GdGvnda+alk ad+G+++ + + +ak++ad+il + d++++ a G+ f n +i+ +++ l +l+ ++++
MMSYN1_0879 600 KIIDSLKSN-NVVGFLGDGVNDAVALKKADVGISVNN-ASSLAKQSADVILLEKDLNALEHAFIIGRKTFSNAIKYIKITVASNFGILlTLLLATSLF 695
******876.8***********************976.5789*******************************9*******99998751666666788 PP
TIGR01522 675 klenplnamqilwinilmdGppaqslGvepvdkdvlkkpprkrkdkiltkdllkkvlvsaviivvgtllvfvkelq...dgvvtardttmtftcfvff 769
k+e + ++q+l n++ d + ++vd+ +kkp + ++i+ +++ + + + + +l f +++ ++ +t c + +
MMSYN1_0879 696 KFE-VMSPIQLLIQNLIFDFAN-LVFVFDNVDESSIKKPQKWNIKSIIPFAIFNGLTQVIISFINFMILYFGFNIKgldTYSIELFQTCYFIECILTH 791
887.699************754.456789*********988888888888887766555444555555555455544314567777777777777666 PP
TIGR01522 770 dmfnalacrsetksvfeiGlfsnkmflyavgasllGqllvvyvpflqkv.fqt.....ealsikd.llllllisssvlivdeirk 847
m l r++ s f+ + s +m++ + s++ ++v + ++++ f+ +++ ++ l+l+++ +i+ e++k
MMSYN1_0879 792 IM-IILVLRTDKLSFFK-SIASKQMLISMLFFSVVCFMIVFISSSFNSLgFKMmignfNNINLSWwFLILFGLEILSWIISELIK 874
55.58999***999998.799***************9999888888775333211111334443224556666666666666655 PP
>> TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 96.7 7.2 8e-31 2.3e-28 2 283 .. 74 374 .. 73 387 .. 0.73
2 ! 148.3 3.3 2.1e-46 5.9e-44 372 677 .. 420 742 .. 399 849 .. 0.88
Alignments for each domain:
== domain 1 score: 96.7 bits; conditional E-value: 8e-31
TIGR01116 2 leqfedllvrilllaavvsfvlvaalv...ePlvillilvlnaivGvwqernaek.......ai........ealkeleseealvlrd...arkakdl 78
+e f+ ll+ i +l ++ f+++ +++ ++i+ ++ l +iv +qe +a k i +++k++++ + + +++ ++k+ +l
MMSYN1_0879 74 IEPFNLLLLFIGILELIIYFLFQRNWItliSAFIIFFMIFLASIVDFIQEYKAYKfnlkltkIIendvfvvnDQIKDFNNLNYQNIKNnliKEKQSNL 171
5667778888888888999999987752226899999999999999999999866222111112111122223455544433333333222467899* PP
TIGR01116 79 vpGdivelavGdkvpadvrllelkslkvdqsiltGesvsvekktesvkkekaavqdkknmlfsGtlvvaGkalgvvvrtGvnteiGkirkevkeaeee 176
+Gd+v l Gd +p+d r+ ++ l d+s ltGes++++k+t k+ ++ + +n+lf+ tl+v+G+ l+vv++ + + + + + e+
MMSYN1_0879 172 TIGDVVYLSKGDIIPSDCRIIWSEDLYLDESTLTGESKAIKKQTTNTKT---NFLELENILFKETLIVSGNCLAVVININKDNYSNSLLDLIDD--EV 264
*******************************************986655...5666778*******************9988777766666644..45 PP
TIGR01116 177 ktPlkkkldefGeklskvialicilv.wv..inikkflaiyyfkiavalavaaiPeGlPavittclalGtrkmakknalvrklPsvetlGcttvicsd 271
t +k ++ + l +i+++ ++ ++ + + + + ++ +++av+ Pe lPa+i++ l l +++++k++ +++kl ++ +G + ++ +d
MMSYN1_0879 265 ITDYEKGINKVTKILIYLISILVFIItFIslLKTGISNWTSSLVFGLSIAVSLTPEALPAIISSNLKLASKRLSKNKVVIKKLSVLQNIGSVNILATD 362
566667777766666665554433330221133333344455556667788889******************************************** PP
TIGR01116 272 ktGtlttnkmsv 283
ktGtlt ++ +
MMSYN1_0879 363 KTGTLTLDTTNI 374
*****9876665 PP
== domain 2 score: 148.3 bits; conditional E-value: 2.1e-46
TIGR01116 372 likkkatlefsrdrksmsvlvk...snklfvkGapeellersthillkgsavPltekakqkilaslkelssealrclalavke.....esklifiGvv 461
ik + l+f+ + + svl++ sn l+ kG+ ee+le ++ i ++++++ l ++ k+ i+ +++++++++ ++l l++k+ + +li+ G+v
MMSYN1_0879 420 DIKLIDHLSFDHNFRISSVLINfnsSNLLITKGSLEEILEITSFINVNNQVINLCDNYKNMIIDQVNSYTKKGYKVLVLSYKNsdvidNKNLIYLGMV 517
4556678999999999999985221556889**************************************************9633332679******* PP
TIGR01116 462 glkdPPreevadaiekcreaGirvivitGdnketaeaiarriGils..sftGkefeeleekkal.......vfsrvePshklklvelkeldqivamtG 550
+ d re+v++ i++ ++ i + v++Gdn t + ++ ++Gi s s+ Gk++++l++++ + +f + P +k k+++ + +++v G
MMSYN1_0879 518 VFSDQIRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVCDQVGINSntSLIGKQINNLTKEELIkisqsvnIFYKLSPLDKAKIIDSLKSNNVVGFLG 615
********************************************8644899*******9987642222223777899********************* PP
TIGR01116 551 dGvndaPalkkadiGiamGsGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevvsifl.taalgiealipvqllWvnlvtd 647
dGvnda alkkad+Gi++ + +ak+++d++l + ++ ++ +a Gr + n ++i+ ++sn G + +++l t+++ +e+++p+qll nl+ d
MMSYN1_0879 616 DGVNDAVALKKADVGISVNNASSLAKQSADVILLEKDLNALEHAFIIGRKTFSNAIKYIKITVASNFGILLTLLLaTSLFKFEVMSPIQLLIQNLIFD 713
********************************************************************9998765267889****************9 PP
TIGR01116 648 GlPatalgfnppdkdilkkpprkedeplit 677
f++ d+ +kkp++ + +++i
MMSYN1_0879 714 FA-NLVFVFDNVDESSIKKPQKWNIKSIIP 742
65.566789999999999998877777665 PP
>> TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 87.3 9.1 6.1e-28 1.7e-25 27 237 .. 148 382 .. 133 396 .. 0.77
2 ! 39.9 0.0 1.5e-13 4.2e-11 293 369 .. 480 565 .. 422 579 .. 0.88
3 ! 93.6 1.5 7.7e-30 2.2e-27 356 463 .. 580 691 .. 576 702 .. 0.93
4 ? -4.5 1.8 4.2 1.2e+03 135 152 .. 816 831 .. 790 845 .. 0.45
Alignments for each domain:
== domain 1 score: 87.3 bits; conditional E-value: 6.1e-28
TIGR01494 27 lkdkelnskkvtvlregekeisskdlvvGDivlvkkgekvpaDgvll.sgsaevdessLtGEsnpvekkeavfag......tinfegtlklkvskiav 117
+kd n+ +++ ++++ ++++++l +GD+v+++kg+++p D++++ s +++ des LtGEs+ ++k+ +++ i f+ tl+++ +++av
MMSYN1_0879 148 IKD--FNNLNYQNIKNNLIKEKQSNLTIGDVVYLSKGDIIPSDCRIIwSEDLYLDESTLTGESKAIKKQTTNTKTnfleleNILFKETLIVSGNCLAV 243
566..8888899999*****************************9874789**************999877666411111156789999999999999 PP
TIGR01494 118 vvktgsek..............tplqrkldklalifllal..lllallvfllvlielktflkiilralillviaiPiaLpvavtialavgdkrl...a 196
v++ ++ t ++ ++k++ i+++++ l+++++++ l ++++++ +++ l+++v+++P+aLp+ ++ l +++krl +
MMSYN1_0879 244 VININKDNysnslldliddeviTDYEKGINKVTKILIYLIsiLVFIITFISLLKTGISNWTSSLVFGLSIAVSLTPEALPAIISSNLKLASKRLsknK 341
9987776511111111111111223444555666655554105555555566667889999**************************99999884446 PP
TIGR01494 197 ilvrslnaleelgkvdvilsDKTGTLTenkmelkkvvigge 237
+++++l++l+++g+v+++++DKTGTLT + +++ + +++
MMSYN1_0879 342 VVIKKLSVLQNIGSVNILATDKTGTLTLDTTNIETYLDINN 382
9****************************999998877765 PP
== domain 2 score: 39.9 bits; conditional E-value: 1.5e-13
TIGR01494 293 kleekleelaseglrtlavaske.........ellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglfarv 369
++ +++++++++g+++l++ +k+ ++lG+++++d++re+vk++i++ k+ +i++++l+GDn t k+++ ++g+ ++
MMSYN1_0879 480 MIIDQVNSYTKKGYKVLVLSYKNsdvidnknlIYLGMVVFSDQIRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVCDQVGINSNT 565
45679999***********9997444444444599**********************************************97665 PP
== domain 3 score: 93.6 bits; conditional E-value: 7.7e-30
TIGR01494 356 AkaiakelglfarvsPeqKaeivellkkkgevvamiGDGvNDapALkaAdVGiais.....AkaaadivllddnlslvvlllkeGrktykrikklily 448
++i++++++f ++sP +Ka+i+ +lk+ ++vv + GDGvNDa ALk+AdVGi+++ Ak++ad++ll+++l ++++++ Grkt+++ +k+i++
MMSYN1_0879 580 LIKISQSVNIFYKLSPLDKAKIIDSLKS-NNVVGFLGDGVNDAVALKKADVGISVNnasslAKQSADVILLEKDLNALEHAFIIGRKTFSNAIKYIKI 676
589************************9.68***********************97666669************************************ PP
TIGR01494 449 lliknliliilllvl 463
++++n+ + ++ll++
MMSYN1_0879 677 TVASNFGILLTLLLA 691
********9999875 PP
== domain 4 score: -4.5 bits; conditional E-value: 4.2
TIGR01494 135 lalifllallllallvfl 152
++++f + ++ +++vf+
MMSYN1_0879 816 ISMLF--FSVVCFMIVFI 831
11111..11111111111 PP
>> TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 117.6 0.5 6.1e-37 1.7e-34 22 427 .. 103 562 .. 78 568 .. 0.79
2 ! 78.1 0.9 5.6e-25 1.6e-22 429 530 .. 588 687 .. 576 709 .. 0.86
Alignments for each domain:
== domain 1 score: 117.6 bits; conditional E-value: 6.1e-37
TIGR01525 22 a...lllvllllgelLeelakskasealsellelapeealllkedd..............seeevaveelqvgDivkVkpGekipvDGevi.egesev 101
+ ++++++ l+ +++ + + ka + +l + ++++ ++++ + + + + ++l++gD+v +++G+ ip D+++i + +
MMSYN1_0879 103 IsafIIFFMIFLASIVDFIQEYKAYKFNLKLTKIIENDVFVVND-QikdfnnlnyqniknNLIKEKQSNLTIGDVVYLSKGDIIPSDCRIIwSEDLYL 199
25658999999999999999999999999999999999999996.4589999*9998877667778899********************98355678* PP
TIGR01525 102 DesllTGEslpvekkegde..........ViaGtvnlegsleikvtkvgedstlaqivklveeaqeskakiqrladklasyfvplvlaialltflvwl 189
Des+lTGEs+ ++k++ ++ + t+ +g+ v + ++d++ + + +l+++ +++++ ++k+++ +++l+ ++ ++++++l
MMSYN1_0879 200 DESTLTGESKAIKKQTTNTktnfleleniLFKETLIVSGNCLAVVININKDNYSNSLLDLIDDEV--ITDYEKGINKVTKILIYLISILVFIITFISL 295
**************9865433343334438999****************************9865..5689999******999998877777666665 PP
TIGR01525 190 alga.lka.ealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdvevlkdseseeella.. 283
+ + +++ +l+ ++++ v +P aL + + a+++ +kn ++ik ++l+++ +v++++ DKTGTLT + ++ +++++ ++ l++
MMSYN1_0879 296 LKTGiSNWtSSLVFGLSIAVSLTPEALPAIISSNLKLASKRLSKNKVVIKKLSVLQNIGSVNILATDKTGTLTLDTTNIETYLDINNQK-NKLLMQyf 392
3333433459****************************************************************999999876665433.34444466 PP
TIGR01525 284 .laaalessseHplakaivkyake.......kslelkkve................veeveevpgkgvsakvdgeeevrigneklleeleaeeekvke 357
+ a +++ + kai++++k+ + +++ + ++ kg ++ + ++ + n+++++ ++ ++ + +
MMSYN1_0879 393 fYNAYFQNNLFDTIDKAIIDQFKTnisdiklI-------DhlsfdhnfrissvlinFNSSNLLITKGSLEEILEITSFINVNNQVINLCDNYKNMIID 483
688999*****************855555550.......34455555555555555666666677766555555466666777778888888887788 PP
TIGR01525 358 eleeeeeqgktvvlvavdd.........ellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgii 427
++++ ++g++v++++ ++ +lg+++++D++r+++k++i+ +k+ +i++ l+GDn + ++v +++gi+
MMSYN1_0879 484 QVNSYTKKGYKVLVLSYKNsdvidnknlIYLGMVVFSDQIRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVCDQVGIN 562
88888888888888776654444444345789*******************9999**********************93 PP
== domain 2 score: 78.1 bits; conditional E-value: 5.6e-25
TIGR01525 429 evvaellPedKlakvkklqeeegkkvamvGDGiNDApALaaAdvGiamgsgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNlvlalvynlv 526
+++ +l+P dK++++ l+ ++++v + GDG+NDA AL++AdvGi+++++s +a+++ADv+ll++dl+ + +a + rkt+++ + + ++++ n+
MMSYN1_0879 588 NIFYKLSPLDKAKIIDSLK--SNNVVGFLGDGVNDAVALKKADVGISVNNASSLAKQSADVILLEKDLNALEHAFIIGRKTFSNAIKYIKITVASNFG 683
56899*************9..5668*********************************************************9988888888887765 PP
TIGR01525 527 aipl 530
++++
MMSYN1_0879 684 ILLT 687
5443 PP
>> TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 183.1 37.2 7e-57 2e-54 50 850 .. 35 837 .. 5 877 .. 0.77
Alignments for each domain:
== domain 1 score: 183.1 bits; conditional E-value: 7e-57
TIGR01517 50 tdlneGvssselerRekvygknelpekkeksflqlvwealsDktlilLsvaavvslvvgeekeeketgwieGvailvsvllvvlvtavnDykkelqfr 147
d + G+++++ ++ ++g+n++ kk f +++ ++ l+lL + + l++ +++ +i + i+ ++l +v +++yk +
MMSYN1_0879 35 LDSKIGLNNQTRQNNISKFGSNQIVVKKFLIFKKILETLIEPFNLLLLFI-GILELIIYFLFQRNWITLISAFIIFFMIFLASIVDFIQEYKAYKFNL 131
47789*************************99999877777777776665.68889998888899999999999999999999999999998765555 PP
TIGR01517 148 eLnekkeekkikv......iRggqeiqis...i....advvvGDivslstGdvvpaDgvlisGlklkiDessltGesdpikkgkekLlsGtkvlegsg 232
+L++ e+ + v + + ++i+ i ++++GD+v ls Gd++p D+ +i +l +Des ltGes ikk++++ + t+ le +
MMSYN1_0879 132 KLTKIIENDVFVVndqikdFNNLNYQNIKnnlIkekqSNLTIGDVVYLSKGDIIPSDCRIIWSEDLYLDESTLTGESKAIKKQTTN--TKTNFLELEN 227
6666655544433222000333334444322222222579******************************************9655..6677777777 PP
TIGR01517 233 rmlvtavGvnsvtGklltelreageeepl.qlkLselasligk.fGlgsavllllvlvlryviekivedteekaktlldlfiiavtivvvavPegLPL 328
+ v+ ++ ++++++ + l l +e+ + k + ++ +l++l+ +l ++i+ + + ++ +++ ++ ++ i v Pe+LP
MMSYN1_0879 228 ILFKETLIVSGNCLAVVININKDNYSNSLlDLIDDEVITDYEKgINKVTKILIYLISILVFIIT-FISLLKTGISNWTSSLVFGLSIAVSLTPEALPA 324
7776676666666666666665554444404444444444443134455666666666666665.5556678899999******************** PP
TIGR01517 329 avtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvkgyigeeavrnilveaivlnssaeeekdkgkeefiGsktetalLelv 426
+ L a k+l k++ +++L+ +Gs + +DktGtLt ++ + + +++ +++l++ + n +++ + + ++a++
MMSYN1_0879 325 IISSNLKLASKRLSKNKVVIKKLSVLQNIGSVNILATDKTGTLTLDTTNIETYLDINNQKNKLLMQYFFYNAYFQNN--------LFDTIDKAII--- 411
**********************************************9999888888888888889988888766544........3345566766... PP
TIGR01517 427 klllkdvkekrkeekvvkiypfeserkkmsvvvkhseglRlfikGaseivlkkcekkldsngeakeisek.kdevedeienlasealRtislaykdel 523
++ k++++ k+++ +f+ + + sv+++ + l +kG+ e +l+ ++ ++ n+++ +++++ k+++ d++++ + ++ + ++l yk++
MMSYN1_0879 412 ----DQFKTNISDIKLIDHLSFDHNFRISSVLINFNSSNLLITKGSLEEILEITSF-INVNNQVINLCDNyKNMIIDQVNSYTKKGYKVLVLSYKNSD 504
....567788889999**********************************986655.6677777777766377899*****************99753 PP
TIGR01517 524 pekdspnkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltagel.alegkefrk...dkilpklrvlaRssPlDkq 617
+nk+l+ ++v ++d +r +v++ +++ ++ i +++ GDnl t k++ + gi +++ l + + ++ k +ki + ++++ + sPlDk
MMSYN1_0879 505 ---VIDNKNLIYLGMVVFSDQIRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVCDQVGINSNTSLiGKQINNLTKeelIKISQSVNIFYKLSPLDKA 599
...456779***************************************************9987652444444444112688999************* PP
TIGR01517 618 lLvelkklgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRavydsikkflqfqLtvnvvavilafvgaliss 715
+++ k +vv GDG nDa aLk+advG+++ a +ak+++D+ill+ + +++ +a + GR + k++++ + n ++ +++ + +
MMSYN1_0879 600 KIIDSLKSNNVVGFLGDGVNDAVALKKADVGISVNNA-SSLAKQSADVILLEKDLNALEHAFIIGRKTFSNAIKYIKITVASNFGILLTLLLATSLFK 696
***********************************99.99********************************************99999999999*** PP
TIGR01517 716 tspLtavqlLWvnlimDtLaaLaLateePteelldRkPigrkaplisrsmwknilgqaayqlv....vlfilefaGeelfti.vfnt..fvllqlfne 806
+++ +qlL nli D a L ++ +e+ ++++ + +++i ++++ l+q ++ + f + G + ++i +f t f+ + l +
MMSYN1_0879 697 FEVMSPIQLLIQNLIFD-FANLVFVFDNVDESSIKKPQKWNIKSIIPFAIFN-GLTQVIISFInfmiLYFGFNIKGLDTYSIeLFQTcyFIECILTHI 792
*****************.79**************999899999999988875.345555544400004444555677777775566522444444443 PP
TIGR01517 807 ln..aRkleelnvfeglfknaifvaivlitlavqviivefgGaals 850
+ + ++l +f+ + ++ ++++ + +++ + iv++ ++ s
MMSYN1_0879 793 MIilVLRTDKLSFFKSIASKQMLISMLFFSVVCFM-IVFISSSFNS 837
33113456899****99999888887777666543.3444433333 PP
>> TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 98.1 9.1 2.7e-31 7.7e-29 31 361 .. 35 373 .. 5 385 .. 0.78
2 ! 8.7 0.1 0.00029 0.08 478 611 .. 447 565 .. 431 568 .. 0.75
3 ! 51.1 2.9 4.4e-17 1.2e-14 640 805 .. 568 729 .. 564 761 .. 0.81
4 ? 3.1 8.8 0.014 3.8 893 981 .. 780 875 .. 771 885 .] 0.72
Alignments for each domain:
== domain 1 score: 98.1 bits; conditional E-value: 2.7e-31
TIGR01106 31 tdlskglsearaaellardgpnaltppkttpeyvkfarqlfgglslllwigailcfl.aygiqaaeeeepsednlylgvvlsavv.ivtgvfsyyqea 126
d + gl+++ ++++ + g n + k+ + k+++ l+ ++lll il ++ + q + s +++ + l+ +v + +y +
MMSYN1_0879 35 LDSKIGLNNQTRQNNISKFGSNQIVV-KKFLIFKKILETLIEPFNLLLLFIGILELIiYFLFQRNWITLISAFIIFFMIFLASIVdFIQEYKAYKFNL 131
35677999*99***********8876.5667899**********99876555665550556788888999999999999998877367777788889* PP
TIGR01106 127 ksskilesfknlvpqqalvirdgeklsin.......aeevvvgdlvevkggdripadlriisakglkvdnssltgesepqtrspefthenpletrnia 217
k +ki+e +v +q + + +i+ ++ +gd+v + gd ip+d rii +++l +d+s+ltges+ + + t+ n le ni
MMSYN1_0879 132 KLTKIIENDVFVVNDQIKDFNNLNYQNIKnnlikekQSNLTIGDVVYLSKGDIIPSDCRIIWSEDLYLDESTLTGESKAIKKQTTNTKTNFLELENIL 229
*******9888888887666665544443111111145799********************************************************* PP
TIGR01106 218 ffstncvegtargivvstgdrtvlgriaslasglesgktpiaieiehfidiitgvavfl.gvsffilsli....le.ytfleavifligiivanvpeg 309
f t +v g + +v+++ + l ++ + + ++ e+ i+ +t + ++l + fi+++i + ++ ++++f ++i v+ pe
MMSYN1_0879 230 FKETLIVSGNCLAVVININKDNYSNSLLDL---IDDE---VITDYEKGINKVTKILIYLiSILVFIITFIsllkTGiSNWTSSLVFGLSIAVSLTPEA 321
*****************9988765544444...4444...5556666666666655543245555555442211232479****************** PP
TIGR01106 310 llatvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnrmt 361
l a ++ l l++krl++ ++k+l ++ +gs ++ +dktgtlt +
MMSYN1_0879 322 LPAIISSNLKLASKRLSKNKVVIKKLSVLQNIGSVNILATDKTGTLTLDTTN 373
**********************************************987654 PP
== domain 2 score: 8.7 bits; conditional E-value: 0.00029
TIGR01106 478 llvmkgaperilercssilikgkeqpldeelkeafqnaylelgglgervlgfchlylpeeqypegfkfdvddvnfpvenlcfvgllsmidppraavpd 575
ll+ kg+ e ile s i ++ + l ++ k++ + + g +vl + + + d + +nl ++g++ + d r v +
MMSYN1_0879 447 LLITKGSLEEILEITSFINVNNQVINLCDNYKNMIIDQVNSYTKKGYKVLVL-----SYK---------NSD-VIDNKNLIYLGMVVFSDQIRENVKQ 529
6666666666666666666666666666666666666655555555555432.....211.........111.234679******************* PP
TIGR01106 576 avgkcrsagikvimvtgdhpitakaiaksvgiiseg 611
+ ++ i + +++gd t k + vgi s++
MMSYN1_0879 530 VIDTFKAYDIDIKVLSGDNLYTCKNVCDQVGINSNT 565
********************************9986 PP
== domain 3 score: 51.1 bits; conditional E-value: 4.4e-17
TIGR01106 640 hgsdlkdltseqldeilkehteivfartspqqkliivegcqrqgaivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgve 737
g ++++lt+e+l +i ++ +f + sp +k i+++ + + +v gdgvnd+ alkkad+g+++ a s +kq+ad+ill+ ++ ++
MMSYN1_0879 568 IGKQINNLTKEELIKISQSV--NIFYKLSPLDKAKIIDSLK-SNNVVGFLGDGVNDAVALKKADVGISVNNA-SSLAKQSADVILLEKDLNALEHAFI 661
5899999******9997665..4899***********9986.67899*********************9977.5689********************* PP
TIGR01106 738 egrlifdnlkksiaytltsnipeitpflifiivniplplgtvtilcidlgtdlvpaislayekaesdi 805
gr f n k i t++sn + l+ + + + +l+ +l d+ + + + es i
MMSYN1_0879 662 IGRKTFSNAIKYIKITVASNFGILLTLLLATSLFKFEVMSPIQLLIQNLIFDFANLVFVFDNVDESSI 729
********************998777666543333334555666666666666555554444455555 PP
== domain 4 score: 3.1 bits; conditional E-value: 0.014
TIGR01106 893 htaffvsivvvqiadliirktrrnsvfqqglknkililglveeva..laaflsy...cpgmeval.rllplkltwwlva.lpysllifvydevrkl 981
+t++f+ +++ i +++ +t ++s f+ ++li l++ v+ + +f+s + g ++++ ++ ++l+ww+ + +l ++ e+ k
MMSYN1_0879 780 QTCYFIECILTHIMIILVLRTDKLSFFKSIASKQMLISMLFFSVVcfMIVFISSsfnSLGFKMMIgNFNNINLSWWFLIlFGLEILSWIISELIKK 875
799************************99988888888888876522233444311134555544367899*****97515677888888885443 PP
>> TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 58.9 1.3 3.6e-19 1e-16 72 290 .. 149 385 .. 100 392 .. 0.75
2 ! 24.3 0.1 1.1e-08 3.1e-06 348 413 .. 501 566 .. 464 583 .. 0.82
3 ! 62.4 1.3 3e-20 8.5e-18 408 501 .. 587 682 .. 573 707 .. 0.79
Alignments for each domain:
== domain 1 score: 58.9 bits; conditional E-value: 3.6e-19
TIGR01511 72 ekLaklkpeeatllkkdvdveelqvgdilkvkpgekipvDGvvveGes.evdeslltGEslpvkkkvgde..........viaGtvngegsllvkvtk 158
++ +l+ ++ + + + ++l +gd++ + g+ ip D+++++ e +des ltGEs+++kk++ ++ ++ t+ +g+ l v +
MMSYN1_0879 149 KDFNNLNYQNIKNNLIKEKQSNLTIGDVVYLSKGDIIPSDCRIIWSEDlYLDESTLTGESKAIKKQTTNTktnfleleniLFKETLIVSGNCLAVVIN 246
55555544444433333455799*********************987638***************986532223222232678999999988888889 PP
TIGR01511 159 vgedtllaqivklveeAqqskakiqrlAdkvaslfvpvv.iaiavltfvi........WllalevavtvliiaCPcalGLAiplvvlvatglaaknGv 247
+++d++ + +++l+++ + +++ +kv++++++++ i++ ++tf+ W+ +l++ ++ + P al i + a+ + +kn v
MMSYN1_0879 247 INKDNYSNSLLDLIDDEV--ITDYEKGINKVTKILIYLIsILVFIITFISllktgisnWTSSLVFGLSIAVSLTPEALPAIISSNLKLASKRLSKNKV 342
999999888888888754..34566666777777666652334455554222333345*********************99***************** PP
TIGR01511 248 likdgealekaaevdtvvfDKTGTLTeGklevtevkelsesll 290
+ik+ ++l+++ +v+++ DKTGTLT + ++ + +++++
MMSYN1_0879 343 VIKKLSVLQNIGSVNILATDKTGTLTLDTTNIETYLDINNQKN 385
***************************9999998887777655 PP
== domain 2 score: 24.3 bits; conditional E-value: 1.1e-08
TIGR01511 348 gttsvlvakkgelaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgievlae 413
+++ v+ +k+ +++++ +d++++++k+vi++ k+ +i + +l+GDn + k+v ++gi+ +
MMSYN1_0879 501 KNSDVIDNKNLIYLGMVVFSDQIRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVCDQVGINSNTS 566
55667777777788999********************************************87655 PP
== domain 3 score: 62.4 bits; conditional E-value: 3e-20
TIGR01511 408 ievlaevlPedKaakvkelqekkva.mvGDGiNDapaLaaadvgiaigagtdvaieaadvvlln.dlkdvataielsrktlkkikqNllwalgYNv 501
++++ +++P dKa+ + +l++++v+ + GDG+NDa aL +advgi++++++ +a+++adv+ll+ dl+++ +a+ + rkt+++ + + +++ N+
MMSYN1_0879 587 VNIFYKLSPLDKAKIIDSLKSNNVVgFLGDGVNDAVALKKADVGISVNNASSLAKQSADVILLEkDLNALEHAFIIGRKTFSNAIKYIKITVASNF 682
5568899*************9876659**********************************99637***************987666555555443 PP
>> TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 72.3 17.1 1.4e-23 3.9e-21 115 477 .. 14 385 .. 2 416 .. 0.78
2 ! 40.1 1.0 7.2e-14 2e-11 546 701 .. 415 565 .. 389 574 .. 0.80
3 ! 36.0 14.8 1.3e-12 3.5e-10 758 925 .. 568 733 .. 562 849 .. 0.58
Alignments for each domain:
== domain 1 score: 72.3 bits; conditional E-value: 1.4e-23
TIGR01657 115 fskleelvkeks.egdylkaagesn.GLtkgeiakrkelyGkneieikvksfleLlveevlkPfyvfqvfsvilWlldeyyy........yallilvl 202
++k ++ +k ++ +++ l+++ s+ GL++++ ++ ++G+n+i++k+ +++ ++e ++Pf+++++f il l+ + + +a +i+++
MMSYN1_0879 14 YKKQDYVIKLSNtNSNNLESILDSKiGLNNQTRQNNISKFGSNQIVVKKFLIFKKILETLIEPFNLLLLFIGILELIIYFLFqrnwitliSAFIIFFM 111
77777777777766777777777778*******************************************97555444444332222233356677777 PP
TIGR01657 203 sv.lsivlsvkeirkqlkelrdmvaksqsveViRek............keeti..asdelvpgDivlisrleekllpcDa.vLlegscivnEsmltGE 284
++ +siv+ ++e + +l+ + + +v V+ ++ k i + ++l +gD+v++s ++ ++p D+ ++ + + ++Es ltGE
MMSYN1_0879 112 IFlASIVDFIQEYKAYKFNLKLTKIIENDVFVVNDQikdfnnlnyqniKNNLIkeKQSNLTIGDVVYLS--KGDIIPSDCrIIWSEDLYLDESTLTGE 207
65256777777777778899999999999999998888888886655533333224578**********..********9455566789********* PP
TIGR01657 285 svpvlKvpieeeedsdeklqlkekskkhvLfgGTkvlqirpdegdtkvlaiVvrTGFstskGqLvrsilypkprvfkfykdslkfilfla.vlaligf 381
s ++ K + +++ e +++Lf+ T ++ +++la+V+ + +L+ i ++ + +k k +++l+ +++++ f
MMSYN1_0879 208 SKAIKKQTTNT-KTN-----FLE--LENILFKETLIVS-------GNCLAVVININKDNYSNSLLDLI--DDEVITDYEKGINKVTKILIyLISILVF 288
**999987663.332.....222..3578***999984.......67999999988888888888855..6777777777777777766526789999 PP
TIGR01657 382 iyvlielikne.rskkklilrsldiitivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgldllgvqglsnaee 477
i ++i l+k++ + ++ l i +++ P aLPa +s a +rL+k+++ + + +++ G ++++ DKTGTLT d +++ + ++n+++
MMSYN1_0879 289 IITFISLLKTGiSNWTSSLVFGLSIAVSLTPEALPAIISSNLKLASKRLSKNKVVIKKLSVLQNIGSVNILATDKTGTLTLDTTNIETYLDINNQKN 385
999*****9995444444555688999**************************************************************99999987 PP
== domain 2 score: 40.1 bits; conditional E-value: 7.2e-14
TIGR01657 546 edktkelsiirrfeFssalkrmsvivkteeerkkellafvKGaPEtiaellsketvps.......dyke....vlksytreGfRvlAlaskeLpkltl 632
+ + ++ i ++ F+ +++ +sv+++ + l+ +KG+ E i e+ s +v + +yk+ +++syt++G++vl l +k+ +
MMSYN1_0879 415 KTNISDIKLIDHLSFDHNFRISSVLINFNSS----NLLITKGSLEEILEITSFINVNNqvinlcdNYKNmiidQVNSYTKKGYKVLVLSYKNSDVI-- 506
33448899999*****************999....689***********988655554111112256652222579***************97742.. PP
TIGR01657 633 skaqdlsRdavEsnleflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekk 701
d nl +lG++v++ +++++ k+vi +k i++++ +GDnl T +V +vgi ++
MMSYN1_0879 507 ----D------NKNLIYLGMVVFSDQIRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVCDQVGINSNT 565
....1......3699*************************************************86554 PP
== domain 3 score: 36.0 bits; conditional E-value: 1.3e-12
TIGR01657 758 sGkalavllekskellkklllkvkVfARvaPeqKeelvetlkkldytvlmcGDGaNDcgALkqAdvGisLseae..AsvaapFtSklasiscVtnvir 853
Gk ++ l +++ l k+ v++f +++P +K++++ +lk + +v++ GDG ND ALk+AdvGis +a A +a + +++++ +
MMSYN1_0879 568 IGKQINNLTKEE---LIKISQSVNIFYKLSPLDKAKIIDSLKS-NNVVGFLGDGVNDAVALKKADVGISVNNASslAKQSADVILLEKDLNALEHAFI 661
567777776666...9999**********************86.789***********************9986446778889999999999999999 PP
TIGR01657 854 eGRaaLvtslqvFkylalysliqflsvliLylkgskl...gdgQfltidlll.iavvalllsrskplkkLskerps 925
GR + +++++ k+ + l+ l+L++ k+ + +Q+l+++l+ a l+ ++ + + s ++p+
MMSYN1_0879 662 IGRKTFSNAIKYIKITVASNFGILLT-LLLATSLFKFevmSPIQLLIQNLIFdF---ANLVFVFDNVDESSIKKPQ 733
99999999998888765443222222.223333333211145554444433322...2222222233333333333 PP
>> TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 57.4 1.6 8.8e-19 2.5e-16 65 254 .. 167 376 .. 144 384 .. 0.72
2 ! 20.7 0.0 1.2e-07 3.3e-05 313 370 .. 510 566 .. 489 581 .. 0.85
3 ! 62.1 0.8 3.4e-20 9.4e-18 367 463 .. 589 687 .. 582 701 .. 0.83
Alignments for each domain:
== domain 1 score: 57.4 bits; conditional E-value: 8.8e-19
TIGR01512 65 aveelkvgdvvvVkkGervPvDGevl.sgessldesalTGEsvpvekakgde..........vlaGainldgvlkievtkeaedstiakivklveea. 150
+ ++l++gdvv ++kG+ +P D++++ s+ ldes+lTGEs+ ++k++ ++ ++ ++ ++g v ++++d+ + +++l+ ++
MMSYN1_0879 167 KQSNLTIGDVVYLSKGDIIPSDCRIIwSEDLYLDESTLTGESKAIKKQTTNTktnfleleniLFKETLIVSGNCLAVVININKDNYSNSLLDLIDDEv 264
6789*******************987366789*************99886542333333332456666666655555667777777777777766541 PP
TIGR01512 151 ....qsekaktqrlidrlaekytlvvlliallialvs....sllvalvlLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalD 240
++ k+++++ l + ++ ++ +i+ll + +s sl+++l + v +P aL + ++ l a + +++ ++ik vl ++++v+++a+D
MMSYN1_0879 265 itdyEKGINKVTKILIYLISILVFIITFISLLKTGISnwtsSLVFGLSIAVSLTPEALPAIISSNLKLASKRLSKNKVVIKKLSVLQNIGSVNILATD 362
111155556677777777777777777777776655411115666777788889**997777777777889*************************** PP
TIGR01512 241 KTGTLTkGklkvsd 254
KTGTLT + +++
MMSYN1_0879 363 KTGTLTLDTTNIET 376
******98887765 PP
== domain 2 score: 20.7 bits; conditional E-value: 1.2e-07
TIGR01512 313 dekllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelGdevhae 370
+ +lg++++sD++re+++++i +k+ + + +l+GD+ + ++v +++G + +
MMSYN1_0879 510 NLIYLGMVVFSDQIRENVKQVIDTFKAYDI-DIKVLSGDNLYTCKNVCDQVGINSNTS 566
55689************************7.779******************876655 PP
== domain 3 score: 62.1 bits; conditional E-value: 3.4e-20
TIGR01512 367 vhaellPedKveivkelke...vamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvvlaltiilvli 461
+ ++l+P dK +i+ +lk+ v ++GDG+NDa aL++Advgi++ ++s++a ++ADv+ll++dl+ l++a+ ++rkt +++ + + + ++ + ++
MMSYN1_0879 589 IFYKLSPLDKAKIIDSLKSnnvVGFLGDGVNDAVALKKADVGISVN-NASSLAKQSADVILLEKDLNALEHAFIIGRKTFSNAIKYIKITVASNFGIL 685
67899********99887633367889*******************.99******************************9988887777776655544 PP
TIGR01512 462 ll 463
l+
MMSYN1_0879 686 LT 687
43 PP
>> TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.7 1.5 1.2e-14 3.4e-12 24 182 .. 38 217 .. 15 248 .. 0.72
2 ! 35.8 4.3 1.5e-12 4.2e-10 265 365 .. 264 368 .. 247 374 .. 0.82
3 ! 79.7 5.9 8.4e-26 2.4e-23 485 792 .. 423 703 .. 407 767 .. 0.86
4 ? -5.9 4.8 6 1.7e+03 923 986 .. 804 874 .. 799 882 .. 0.57
Alignments for each domain:
== domain 1 score: 42.7 bits; conditional E-value: 1.2e-14
TIGR01523 24 tegltqeeavnrlkevgenrleddskvdakkvl..lrqvlnamiv.vlllaailsfat.tdwie...ggvisavivlnvlvglvqeykaektmdslkt 114
gl ++ +n ++++g n++ + +kk+l l + n +++ + +l +i+ f ++wi+ +i ++i l +v ++qeyka k l +
MMSYN1_0879 38 KIGLNNQTRQNNISKFGSNQIVVKKFLIFKKILetLIEPFNLLLLfIGILELIIYFLFqRNWITlisAFIIFFMIFLASIVDFIQEYKAYKFNLKLTK 135
45999999*************9998888888762233334554431447888998865268987433678999999**************98888888 PP
TIGR01523 115 laspnahvi............rsskseaidsk..dlvpgdvvllkvgdvvpadlrlvetknfetdealltgeslpvikdanl 182
+ v+ ++ k + i+ k +l gdvv l gd++p+d r++ + ++ de+ ltges + k++
MMSYN1_0879 136 IIENDVFVVndqikdfnnlnyQNIKNNLIKEKqsNLTIGDVVYLSKGDIIPSDCRIIWSEDLYLDESTLTGESKAIKKQTTN 217
77777777622222221111134566677655225889************************************99998654 PP
== domain 2 score: 35.8 bits; conditional E-value: 1.5e-12
TIGR01523 265 vgtplqrklsklavll.fciavllaiivmaa.qkfdvdkeva..iyaislalsiipeslvvvlsitmavgakvmvkrrvivrklealealgavtdics 358
v t ++ + k++ +l + i++l+ ii + + k +++ + ++ +s+a+s+ pe+l +++s + + +k ++k +v+++kl l+ +g+v+ + +
MMSYN1_0879 264 VITDYEKGINKVTKILiYLISILVFIITFISlLKTGISNWTSslVFGLSIAVSLTPEALPAIISSNLKLASKRLSKNKVVIKKLSVLQNIGSVNILAT 361
55666666666665541678888877776652577777765544899*************************************************** PP
TIGR01523 359 dktgtlt 365
dktgtlt
MMSYN1_0879 362 DKTGTLT 368
******9 PP
== domain 3 score: 79.7 bits; conditional E-value: 8.4e-26
TIGR01523 485 fvaeypfdsevkrmavvyedqqnetytvyakgaverilercsssy..gstleepd..veliikqveslaaeglrvlalaskvidkddvnitlnrdvae 578
+ fd + r+++v + ++ + +kg++e+ile s + ++ +d +++ii qv+s +++g +vl l+ k d d+
MMSYN1_0879 423 LIDHLSFDHNF-RISSVLINFNSS-NLLITKGSLEEILEITSFINvnNQVINLCDnyKNMIIDQVNSYTKKGYKVLVLSYKNSDVIDN---------- 508
56677888876.667776665554.57889**********9976511444555552279*******************9887655443.......... PP
TIGR01523 579 sdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilptnlisdrdeivdsmvmtgsqfdalseeevddlkvlplviarca 676
+l +l++v d r++ k ++ f+ i +++l+gd t k + +vgi + g q++ l++ee+ ++ + + +
MMSYN1_0879 509 KNLIYLGMVVFSDQIRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVCDQVGINSN------------TSLIGKQINNLTKEELIKISQSVNIFYKLS 594
579*************************************************9655............3478************************** PP
TIGR01523 677 pqtkvkmiealhrrkkfvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfvlqllvenvaevlllvv 774
p k k+i++l+ + v + gdgvnd+ +lk+a+vgi++ n s +ak+++d++l + ++ ++ a gr+ + n k++ +++n + l l++
MMSYN1_0879 595 PLDKAKIIDSLKS-NNVVGFLGDGVNDAVALKKADVGISV-NNASSLAKQSADVILLEKDLNALEHAFIIGRKTFSNAIKYIKITVASNFGILLTLLL 690
***********75.6789********************98.69999*********************************************9987776 PP
TIGR01523 775 gl.vfrdevgksvfplspv 792
f+ ev +sp+
MMSYN1_0879 691 ATsLFKFEV------MSPI 703
541455554......4444 PP
== domain 4 score: -5.9 bits; conditional E-value: 6
TIGR01523 923 eflrslvenkflawaiilaavsvfpvvyipv.inddvfk.....hkyigaewglviva..viayfiyvelyk 986
f++s+ ++l+ + + v +f +v+i n fk + i w i + i+ +i el k
MMSYN1_0879 804 SFFKSIASKQMLISML-FFSVVCFMIVFISSsFNSLGFKmmignFNNINLSWWFLILFglEILSWIISELIK 874
5999999999887555.5556678888887514544444111112344455555554411344566666555 PP
>> TIGR01497 kdpB: K+-transporting ATPase, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 71.4 12.8 3.4e-23 9.6e-21 121 566 .. 168 666 .. 102 758 .. 0.74
2 ? -3.8 1.7 2 5.6e+02 221 277 .. 787 843 .. 784 853 .. 0.77
Alignments for each domain:
== domain 1 score: 71.4 bits; conditional E-value: 3.4e-23
TIGR01497 121 adelkkGdvvlveaGdvipadGevieGv.asvdesaitGesapvlkesGg...dfas....vtGGtrivsdw.lvvevtadpGesfldrmialveG.. 207
++l Gdvv++ Gd+ip+d +i +des++tGes + k++ + +f + t ivs l v + ++ +++ + ++ l++
MMSYN1_0879 168 QSNLTIGDVVYLSKGDIIPSDCRIIWSEdLYLDESTLTGESKAIKKQTTNtktNFLEleniLFKETLIVSGNcLAVVININK-DNYSNSLLDLIDDev 264
457999******************97651689**********9999876511144431111346788898652555555543.455556666665422 PP
TIGR01497 208 .aerrktpneialtvllvaltlvfllvvatlyp..laayagvkisvsvlvallvalipttiGGllsaiGiaGmdrvarfnviatsGraveaaGdvdtl 302
++ +k n+++ ++ + lvf+++ ++l ++ ++ + + +++ v+l p ++ ++s+ +r+ + v+ ++ G v++l
MMSYN1_0879 265 iTDYEKGINKVTKILIYLISILVFIITFISLLKtgISNWTSS---LVFGLSIAVSLTPEALPAIISSNLKLASKRLSKNKVVIKKLSVLQNIGSVNIL 359
267889999998777777777999999999875225666654...44556667888888888888876666679************************ PP
TIGR01497 303 vldktGtitlGnrlaeefipvqGadkkkladvavlasladdtpeGksivelakklgiredtkksesaefveftaktrmsGinle..n.gravrkGavd 397
dktGt+tl e ++ ++ +++k l+++ + +++ + +++ ++ + k ++ f + r+s + ++ + + kG+++
MMSYN1_0879 360 ATDKTGTLTLDTTNIETYLDINNQKNKLLMQYFFYNAYFQNNLFDTIDKAIIDQFKTNISDIK--LIDHLSFDHNFRISSVLINfnSsNLLITKGSLE 455
*******************************99988887776555444555677776665554..467888888888888655421313579****99 PP
TIGR01497 398 ai...kkrveerkGrip......kdldeavekvakqGgtplvv......vvdnk..iy.GviylkdivksGikerfeqlrklGiktimltGdnrltaa 477
i +++ ++ +i + + ++v+ +k+G lv+ v+dnk iy G++++ d ++ +k+ ++ ++ i +l+Gdn t
MMSYN1_0879 456 EIleiTSFINVNNQVINlcdnykNMIIDQVNSYTKKGYKVLVLsyknsdVIDNKnlIYlGMVVFSDQIRENVKQVIDTFKAYDIDIKVLSGDNLYTCK 553
76222567777777764222111334456677789999999973333334555544434999999********************************* PP
TIGR01497 478 viakeaGvdd.......fiaeatpedkievikkeq.................aeGklvamtGdGtndapalaqadvgvamnsGtqaakeaanmvdlds 551
+ ++ G++ i + t e+ i++ + + + ++v + GdG nda al +advg+++n + ak++a+++ l+
MMSYN1_0879 554 NVCDQVGINSntsligkQINNLTKEELIKISQSVNifyklspldkakiidslKSNNVVGFLGDGVNDAVALKKADVGISVNNASSLAKQSADVILLEK 651
******9975222111134555666544443321111111122111111111345678999***********************************99 PP
TIGR01497 552 dptklievveiGkql 566
d l + iG++
MMSYN1_0879 652 DLNALEHAFIIGRKT 666
998888888888765 PP
== domain 2 score: -3.8 bits; conditional E-value: 2
TIGR01497 221 vllvaltlvfllvvatlyplaayagvkisvsvlvallvalipttiGGllsaiGiaGm 277
+l + ++++l + l + + a +++ +s+l +v+++ i + ++G m
MMSYN1_0879 787 CILTHIMIILVLRTDKLSFFKSIASKQMLISMLFFSVVCFMIVFISSSFNSLGFKMM 843
577888888888889999999999999999999999999988888877777776554 PP
>> TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.3 5.6 5.3e-06 0.0015 18 161 .. 66 224 .. 53 239 .. 0.76
2 ! 6.4 4.0 0.0013 0.36 316 377 .. 311 373 .. 243 391 .. 0.78
3 ? -0.3 0.1 0.13 38 512 583 .. 423 502 .. 400 507 .. 0.74
4 ! 15.2 0.1 2.8e-06 0.00079 618 666 .. 508 556 .. 499 588 .. 0.79
5 ! 9.9 20.4 0.00011 0.03 748 1030 .. 589 860 .. 569 883 .. 0.71
Alignments for each domain:
== domain 1 score: 14.3 bits; conditional E-value: 5.3e-06
TIGR01652 18 PknlfeqfkrvaniyFLvvallqavpalsvtnrgtsivpLavvllvtaiKeaieDirrrksDkevNnkkvevlee....................sak 95
k ++e + + n+ L++ +l+ + + + + +++ ++ + i D+ + + ++N k+++++e+ +++
MMSYN1_0879 66 FKKILETLIEPFNLLLLFIGILELIIYFLFQRNWITLISAFIIF-FMIFLASIVDFIQEYKAYKFNLKLTKIIENdvfvvndqikdfnnlnyqniKNN 162
46777777778899999999999999888877777777654444.4444445556666666788999999999999999999********99987678 PP
TIGR01652 96 fkeikwkdlkVGdivkvkkdeeiPaDllllssseedGvcyveTknLDGEtnlKlrqaleeTkklke 161
+ k+ +l +Gd+v + k++ iP+D+ ++ s++ y++ + L GE+ +q++++ +++ e
MMSYN1_0879 163 LIKEKQSNLTIGDVVYLSKGDIIPSDCRIIWSED----LYLDESTLTGESKAIKKQTTNTKTNFLE 224
88889999***********************998....799999****998655555544444444 PP
== domain 2 score: 6.4 bits; conditional E-value: 0.0013
TIGR01652 316 LyvslelvkvvqalfinsDlelydektd.tpasvrtsnlneeLGqveyifSDKTGTLTqNkme 377
L +++ l + ++i s+l+l +++ ++ ++ +++ +++G v+ + DKTGTLT + +
MMSYN1_0879 311 LSIAVSLTPEALPAIISSNLKLASKRLSkNKVVIKKLSVLQNIGSVNILATDKTGTLTLDTTN 373
44555555555557888999998887651567889**********************976655 PP
== domain 3 score: -0.3 bits; conditional E-value: 0.13
TIGR01652 512 iLnvleFnSsrKRmsvivrlpddellLlcKGADsvifkrlse.........esekvlektkehlekyaseGlRTLviarre 583
+++ l F+ + + sv++ ++ + lL++KG i+++ s +++++ + ++++y+++G + Lv+++++
MMSYN1_0879 423 LIDHLSFDHNFRISSVLINFN-SSNLLITKGSLEEILEITSFinvnnqvinLCDNYKNMIIDQVNSYTKKGYKVLVLSYKN 502
566667777777777888887.566789999988888776544444344434467788888999*************9986 PP
== domain 4 score: 15.2 bits; conditional E-value: 2.8e-06
TIGR01652 618 EkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinig 666
k+L+ lg+ D++ e+V++ i++ + +i i vL GD T n+
MMSYN1_0879 508 NKNLIYLGMVVFSDQIRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVC 556
489******************************************9985 PP
== domain 5 score: 9.9 bits; conditional E-value: 0.00011
TIGR01652 748 lcCRvsPsqKaavvklvkkslskvtlaigdGaNDVsmiqeAdvGvGisGkEGkqAvmasDfai..gqFrfLekLlLvHGrwsYkRisklilyffyk 841
+ + sP+ Ka++++ +k++ +v+ +gdG ND +++AdvG+ ++ + A +++D + + + Le+ + Gr ++ k i ++
MMSYN1_0879 589 IFYKLSPLDKAKIIDSLKSN--NVVGFLGDGVNDAVALKKADVGISVNNA-SSLAKQSADVILleKDLNALEHA-FIIGRKTFSNAIKYIKITVAS 680
55678************998..89999******************99866.57899999988733445666665.566****************** PP
TIGR01652 842 nlilalilfwyslvnefsgqtlyeewllvlynvifTslPvivlGvldqdvsaslllkyPqLYkegikgkefsvkvflvw.mldglyqslvifllal 936
n + l+l+ + +++f+ ++ + l + n+if + +++ +d+ v++s+++ P +++++k ++ + +++gl q ++ f+ +
MMSYN1_0879 681 NFGILLTLLLATSLFKFE---VMSPIQLLIQNLIFDFANLVFV--FDN-VDESSIK-KP---------QKWNIKSIIPFaIFNGLTQVIISFINFM 760
********9999999997...5667778889****99988776..885.7776654.45.........6899998886626799999988888877 PP
TIGR01652 937 lvlkleavvssG.evedllslgvivftalvvv.vnlkialeierwnkislia...iagsilvvlif...vivyseilpseefykaaarvlkslvfw 1024
+ ++ +G ++ +++ + ++ f+ +++ +++ + l++ ++ ++ ia + s+l++ ++ ++++s+++ s f++++ ++ + w
MMSYN1_0879 761 ILYFGFNI--KGlDTYSIELFQTCYFIECILThIMIILVLRTDKLSFFKSIAskqMLISMLFFSVVcfmIVFISSSFNSLGFKMMIGNFNNINLSW 854
77777555..77666666666666555555541555667888888888777622245677776554111344566666888888888777766666 PP
TIGR01652 1025 lvllvv 1030
+ l++
MMSYN1_0879 855 WFLILF 860
665553 PP
>> TIGR00338 serB: phosphoserine phosphatase SerB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.1 0.0 0.5 1.4e+02 129 174 .. 194 236 .. 188 240 .. 0.82
2 ? -3.0 0.0 3.7 1.1e+03 92 108 .. 483 499 .. 468 508 .. 0.84
3 ! 18.5 3.0 9.8e-07 0.00027 86 215 .. 523 656 .. 504 660 .. 0.75
Alignments for each domain:
== domain 1 score: -0.1 bits; conditional E-value: 0.5
TIGR00338 129 aNrLevedgkltGkvegeivdesakaktllkllekegislektvav 174
+ L +++ ltG+ + ++++ ++t+++ le e+i +++t++v
MMSYN1_0879 194 SEDLYLDESTLTGESK--AIKKQ-TTNTKTNFLELENILFKETLIV 236
6677888899999765..67888.8999*************99988 PP
== domain 2 score: -3.0 bits; conditional E-value: 3.7
TIGR00338 92 elvkkLkekgykvaviS 108
+ v++ +kgykv v+S
MMSYN1_0879 483 DQVNSYTKKGYKVLVLS 499
568888999****9998 PP
== domain 3 score: 18.5 bits; conditional E-value: 9.8e-07
TIGR00338 86 lteGveelvkkLkekgykvaviSGgFdlvaeklkekLgldavfaNrLeve.dgkltGkve...geivdesakaktllkllekegislektv.avGDGa 178
+ e v++++ + k +++ + v+SG + +++ ++ g++ + L+ + ++lt + ++ v+ +k l k ++++++v +GDG
MMSYN1_0879 523 IRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVCDQVGINSNTS--LIGKqINNLTKEELikiSQSVNIFYKLSPLDKAKIIDSLKSNNVVgFLGDGV 618
557789999999************************99986433..222213334443330013444455556666666666667777777568**** PP
TIGR00338 179 nDlsmikaAglgiaf.nakpvlkekadiviekkdltdi 215
nD ++k+A++gi+ na k+ ad+ + +kdl ++
MMSYN1_0879 619 NDAVALKKADVGISVnNASSLAKQSADVILLEKDLNAL 656
*************97258888999**********9876 PP
>> TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.0 0.5 7.4e-06 0.0021 23 177 .] 463 627 .. 449 627 .. 0.70
Alignments for each domain:
== domain 1 score: 16.0 bits; conditional E-value: 7.4e-06
TIGR01488 23 llgtndevkeltrlvlegrisfedrlgrrlkllersl...........leelak..eflakevairpgarelikwlkekGiklvivSggldflvekla 107
++ n +v++l + ++ ++++d++++ k+ +++l ++l ++ ++ ir++++++i++ k+ +i++ + Sg + + +++
MMSYN1_0879 463 FINVNNQVINLCDNYK---NMIIDQVNSYTKKGYKVLvlsyknsdvidNKNLIYlgMVVFSD-QIRENVKQVIDTFKAYDIDIKVLSGDNLYTCKNVC 556
5666666666666666...4444444444444444444445655554422222245444444.3669******************************* PP
TIGR01488 108 eklgidk...vfanelelddnGlltgriege....vnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlpllklv 177
+ gi++ +++ ++ + + +l+ + s +K k +++l++ ++ + ++GD+vnD +lk++
MMSYN1_0879 557 DQVGINSntsLIGKQINNLTKEELIKISQ-SvnifYKLSPLDKAKIIDSLKS-NNV----VGFLGDGVNDAVALKKA 627
*******9999999998888885554233.234789999*********6444.333....6689*******999975 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (885 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 423 (0.0942513); expected 89.8 (0.02)
Passed bias filter: 76 (0.016934); expected 89.8 (0.02)
Passed Vit filter: 22 (0.00490196); expected 4.5 (0.001)
Passed Fwd filter: 17 (0.00378788); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 16 [number of targets reported over threshold]
# CPU time: 0.79u 0.17s 00:00:00.96 Elapsed: 00:00:00.71
# Mc/sec: 1790.00
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0879 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0881 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0881.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0881/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0881 [L=475]
Description: membrane protein, putative 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
------ inclusion threshold ------
0.017 13.7 0.8 1.8 7.1 0.1 2.9 2 TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subuni
Domain annotation for each model (and alignments):
>> TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.1 0.1 0.00041 1.8 10 28 .. 320 338 .. 316 351 .. 0.83
2 ? 3.7 0.1 0.005 23 15 39 .. 432 456 .. 430 473 .. 0.76
Alignments for each domain:
== domain 1 score: 7.1 bits; conditional E-value: 0.00041
TIGR01195 10 ltvlGmgiVflvLllLiyv 28
+ +Gmgi + +L++ +y
MMSYN1_0881 320 VALTGMGILLFILSIIVYK 338
5679***********9985 PP
== domain 2 score: 3.7 bits; conditional E-value: 0.005
TIGR01195 15 mgiVflvLllLiyvvrgmgkvvgrk 39
++i+ +vL++L ++ ++g ++ ++
MMSYN1_0881 432 VAIIQVVLIVLLALLSFVGILMLKE 456
6888899999999999999888777 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (475 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 266 (0.0592692); expected 89.8 (0.02)
Passed bias filter: 72 (0.0160428); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 3248.19
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0881 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0885 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0885.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0885/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0885 [L=629]
Description: gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 5=Equivalog tRNA modification
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.4e-252 835.5 1.4 6.2e-252 835.3 1.4 1.0 1 TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modi
2.4e-20 70.7 0.0 2.1e-16 57.7 0.0 2.4 2 TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase
3.6e-06 23.7 1.4 0.0006 16.4 0.1 2.3 2 TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F
2.5e-05 21.2 1.7 0.0027 14.5 0.1 2.8 3 TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
9.3e-05 19.2 1.4 0.0002 18.1 0.1 1.9 2 TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
0.00047 16.9 0.8 0.27 7.8 0.0 2.4 2 TIGR01813 flavo_cyto_c: flavocytochrome c
0.00055 17.0 0.1 0.003 14.6 0.0 2.2 3 TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenas
0.00058 16.6 0.2 0.21 8.2 0.0 2.2 2 TIGR00551 nadB: L-aspartate oxidase
0.0011 15.1 0.1 0.003 13.7 0.0 1.7 2 TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotei
0.003 14.0 2.2 0.005 13.3 0.1 2.2 3 TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarat
0.0045 14.7 1.2 0.01 13.5 1.2 1.6 1 TIGR02032 GG-red-SF: geranylgeranyl reductase family
0.0055 13.7 0.2 0.0094 12.9 0.2 1.3 1 TIGR02023 BchP-ChlP: geranylgeranyl reductase
0.008 13.1 4.3 0.0029 14.6 1.3 1.8 2 TIGR02053 MerA: mercury(II) reductase
0.0085 12.9 1.3 0.11 9.3 0.3 2.5 2 TIGR00275 TIGR00275: flavoprotein, HI0933 family
------ inclusion threshold ------
0.01 12.4 0.1 0.019 11.5 0.1 1.4 1 TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reducta
0.02 11.7 1.2 0.65 6.7 0.1 2.3 2 TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidored
0.02 11.4 0.1 0.033 10.7 0.1 1.4 1 TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
0.033 11.0 0.5 0.063 10.1 0.5 1.6 1 TIGR01438 TGR: thioredoxin and glutathione reductase
0.055 9.1 0.1 0.089 8.4 0.1 1.3 1 TIGR01372 soxA: sarcosine oxidase, alpha subunit family
Domain annotation for each model (and alignments):
>> TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 835.3 1.4 2.6e-254 6.2e-252 1 615 [. 5 621 .. 5 622 .. 1.00
Alignments for each domain:
== domain 1 score: 835.3 bits; conditional E-value: 2.6e-254
TIGR00136 1 fdviviGaGhaGieaalaaarlgaktllltlnldtigklsCnPaiGGlakgilvkeiDalgGlmgkaaDkaalqfrvLnsskGPavralraqiDkvlY 98
+dviv+G+GhaG+eaala+arl+ kt l+ l d+i++++CnP++GG+akgi+v+eiDalgG+m+kaaD++alq ++Lnss+GP v+alr q+Dk++Y
MMSYN1_0885 5 YDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVREIDALGGEMAKAADATALQTKLLNSSRGPGVWALRVQSDKEEY 102
69************************************************************************************************ PP
TIGR00136 99 kkavkealenqpnlsllqeevedliledndevkGvvtkdgaklrakavilttGtfLkgkiyiGekskeaGragekasvklsetLrelgfkvgrlktGt 196
k++++ ++nq+nl+l+ + + l+ +dn+ v+G+ ++d + l+akavi+ttGt+Lk++i G +++e+G+++ek+++++s+ L++lg+k++r+ktGt
MMSYN1_0885 103 SKYMRNVIKNQKNLDLITRACTGLVYDDNKTVTGIYLDDQTILNAKAVIITTGTYLKSEILKGVDRYESGPNNEKTTKGISKSLIDLGIKLMRFKTGT 200
************************************************************************************************** PP
TIGR00136 197 ppriakesidfsklevqkgdeqllafsfktkelsk..kqlsCylthtnekthelirenlhrsplysgsiegkGPrYCPsiedkvvrfadkerhqifle 292
p+r+ ++s+d + + g++ +lafsf+t+++++ kq +Cyl+h + +t ++i++nl++s++ysg++e++GPrYCPs edkvvrf++k+ hqif+e
MMSYN1_0885 201 PARVYRDSVDLTNAVLEPGTDMKLAFSFSTNTYTPieKQQPCYLIHSTLETKKIIEDNLEKSAMYSGTVESIGPRYCPSFEDKVVRFKEKDTHQIFIE 298
*********************************9999************************************************************* PP
TIGR00136 293 PeglnseevYlnGlstslpedvqekivrslkGlenaeilrpgYaieYDyldptqlkptLetkkikgLflaGqinGttGYeeaaaqGllaGinaalklq 390
Pe+ln ++ Y++G+sts+p +vqe +++sl+G+en+++++ +YaieYD +dp+ql p+Le k +++Lf+aGqinGt+GYeeaa+qGl+aGina++k+
MMSYN1_0885 299 PETLNGDTWYVQGFSTSMPIEVQELMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELKDVRNLFTAGQINGTSGYEEAAGQGLIAGINASRKID 396
************************************************************************************************** PP
TIGR00136 391 ekeelilkrseaYiGvlidDLvtkgvkePYrlltsraeyrlllreDnaderLteigrelGlidekryarfkkkkekieeekerLkstklkkskevkee 488
+++il+r+eaYiGv+idDLv+kgv ePYrlltsrae+rlllr+Dna++rL + gre+Gli+++ ++++ ++ie+ ++ Lk+++ +++++++ +
MMSYN1_0885 397 GLDPIILRRDEAYIGVMIDDLVNKGVWEPYRLLTSRAEHRLLLRNDNAETRLKQYGREIGLISDQEWNQYLIYVNEIEQAIKELKEIRFTPKSQLAIN 494
************************************************************************************************** PP
TIGR00136 489 lkklaqsplkeevslvdllkrkelklekltkllpekaeldkevleqveievkYegYikkqeeeikklkklekvklPkkldykkveglsseareklekv 586
lk+++q++l++ s+++++k + +++++l++++p++++l++++l+++ ie+++egY+kk+++ ++kl kle++k+P +++y+kv++l++ea+ klek+
MMSYN1_0885 495 LKNKNQADLSHGYSGYEIIKIPTVDINELIEFIPSLQKLKTNQLQSIVIEIRFEGYVKKERQLVDKLVKLERKKIPLDINYSKVDNLATEAKDKLEKI 592
************************************************************************************************** PP
TIGR00136 587 rPlslaqasrisGitpadisvllvylkkq 615
rPl+++qasri+G++padi++ll ylkkq
MMSYN1_0885 593 RPLNIGQASRITGVNPADIQMLLFYLKKQ 621
**************************997 PP
>> TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.3 0.2 0.00021 0.05 3 127 .. 7 130 .. 5 158 .. 0.66
2 ! 57.7 0.0 9e-19 2.1e-16 266 384 .. 300 418 .. 282 428 .. 0.89
Alignments for each domain:
== domain 1 score: 10.3 bits; conditional E-value: 0.00021
TIGR00137 3 vnviGgGlaGseaawqlakeGvrvilyemrpkkltpahktedlaelvcsnslgakelaraaGllkeelrkldsliieaad..........eaavpaGG 90
v+v+GgG aG eaa a+ + l ++ +++a + c s+g+ + G++ e+ +l+ + +aad ++ p
MMSYN1_0885 7 VIVVGGGHAGVEAALASARLNKKTALINLY---------EDKIATMPCNPSVGGPA----KGIVVREIDALGGEMAKAADatalqtkllnSSRGPGVW 91
89***********98777777766666654.........35667777777776643....34444444444444444444000000000034456666 PP
TIGR00137 91 alav..drkifsesvtekveshpnvtlireevteipeee 127
al v d++++s+++ + +++ n++li t + ++
MMSYN1_0885 92 ALRVqsDKEEYSKYMRNVIKNQKNLDLITRACTGLVYDD 130
7776558999****************9998887765554 PP
== domain 2 score: 57.7 bits; conditional E-value: 9e-19
TIGR00137 266 edkaGtlynlvGfqtklkygeqkrvlrlipglenaefvrlGvmhrntfinspklltaslqlkdredlffaGqltGveGyvasaasGllaGinaarlal 363
e +G + + Gf t + + q+ +l+ +pg+en+ + i+ p l +sl+lkd ++lf aGq+ G+ Gy ++a Gl+aGina+r +
MMSYN1_0885 300 ETLNGDTWYVQGFSTSMPIEVQELMLKSLPGFENVRVKHWAYAIEYDCID-PMQLSPSLELKDVRNLFTAGQINGTSGYEEAAGQGLIAGINASRKID 396
5668999*****************************99999888888887.55689****************************************** PP
TIGR00137 364 Gekllklpa.etmlGalvnyis 384
G+++++l e+ +G +++ ++
MMSYN1_0885 397 GLDPIILRRdEAYIGVMIDDLV 418
****998752778999987665 PP
>> TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.4 0.1 2.6e-06 0.0006 210 241 .. 2 33 .. 1 41 [. 0.92
2 ! 6.2 0.1 0.0031 0.74 394 437 .. 107 150 .. 97 171 .. 0.78
Alignments for each domain:
== domain 1 score: 16.4 bits; conditional E-value: 2.6e-06
TIGR03140 210 kekydvlvvGgGPagaaaaiyaarkGlkvalv 241
k++ydv+vvGgG ag+ aa+ +ar k+al+
MMSYN1_0885 2 KSNYDVIVVGGGHAGVEAALASARLNKKTALI 33
578*********************99999998 PP
== domain 2 score: 6.2 bits; conditional E-value: 0.0031
TIGR03140 394 veklkslsnvdiltsaktkeivgdgdkvtglkykdrsseeekkl 437
+ +k+++n+d++t+a t + d++ vtg+ + d++ + k +
MMSYN1_0885 107 RNVIKNQKNLDLITRACTGLVYDDNKTVTGIYLDDQTILNAKAV 150
56788999999999999999999999999999988876555543 PP
>> TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.5 0.1 1.1e-05 0.0027 1 30 [. 5 34 .. 5 44 .. 0.91
2 ! 4.9 0.0 0.01 2.4 83 122 .. 129 168 .. 95 177 .. 0.72
3 ? -1.7 0.0 0.99 2.3e+02 265 298 .. 362 393 .. 358 395 .. 0.82
Alignments for each domain:
== domain 1 score: 14.5 bits; conditional E-value: 1.1e-05
TIGR01292 1 ydviiiGaGpaGltaaiYaaranlktllie 30
ydvi++G+G aG+ aa+ +ar n kt+li+
MMSYN1_0885 5 YDVIVVGGGHAGVEAALASARLNKKTALIN 34
79************************9997 PP
== domain 2 score: 4.9 bits; conditional E-value: 0.01
TIGR01292 83 dkkerpfkvltedekeykakaviiAtGakarklgikgeee 122
d+++++ ++++d++ +akavii+tG+ + +kg ++
MMSYN1_0885 129 DDNKTVTGIYLDDQTILNAKAVIITTGTYLKSEILKGVDR 168
4455567788889999999999999999888777776655 PP
== domain 3 score: -1.7 bits; conditional E-value: 0.99
TIGR01292 265 veGvfaaGDvrdkslrQvvtaagdGaiAalsvek 298
v +f+aG ++ aag+G iA +++++
MMSYN1_0885 362 VRNLFTAGQING--TSGYEEAAGQGLIAGINASR 393
778999999988..56677899******999876 PP
>> TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.1 0.1 8.6e-07 0.0002 1 31 [. 4 34 .. 4 39 .. 0.95
2 ? -0.6 0.1 0.42 1e+02 211 270 .. 100 159 .. 95 168 .. 0.77
Alignments for each domain:
== domain 1 score: 18.1 bits; conditional E-value: 8.6e-07
TIGR01350 1 eydvvviGgGpgGYvaAiraaqlglkvalve 31
+ydv+v+GgG +G aA +a+l +k+al++
MMSYN1_0885 4 NYDVIVVGGGHAGVEAALASARLNKKTALIN 34
69***************************97 PP
== domain 2 score: -0.6 bits; conditional E-value: 0.42
TIGR01350 211 aevskvlkkklkkkg.vkiltnakvtevekeedevv.veakkkevetleaekvLvavGrkpn 270
+e sk +++ +k+++ ++++t a v +++++v+ + +++ + l+a +v+++ G +
MMSYN1_0885 100 EEYSKYMRNVIKNQKnLDLITRACTGLVYDDNKTVTgIYLDDQ--TILNAKAVIITTGTYLK 159
6788889988887766999999999988888888887666666..78999999999987655 PP
>> TIGR01813 flavo_cyto_c: flavocytochrome c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.3 0.1 0.0017 0.4 1 24 [. 6 29 .. 6 43 .. 0.83
2 ! 7.8 0.0 0.0012 0.27 151 198 .. 121 163 .. 92 191 .. 0.76
Alignments for each domain:
== domain 1 score: 7.3 bits; conditional E-value: 0.0017
TIGR01813 1 dvvvvGsGlAGlsaaleakkagla 24
dv+vvG G AG+ aal+ + +
MMSYN1_0885 6 DVIVVGGGHAGVEAALASARLNKK 29
8**************988776644 PP
== domain 2 score: 7.8 bits; conditional E-value: 0.0012
TIGR01813 151 skvedlikddqgqvtGvkvkekgkkikikaakaVvlatGGfgsnkeli 198
+ l+ dd+ +vtG+ + +i +akaV+++tG + + e++
MMSYN1_0885 121 RACTGLVYDDNKTVTGIYLDD----QTILNAKAVIITTGTYLK-SEIL 163
346789999********9876....5799**********9987.4444 PP
>> TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.0 1.3e-05 0.003 1 30 [. 5 34 .. 5 39 .. 0.97
2 ? -4.2 0.0 6.2 1.5e+03 305 322 .. 141 158 .. 129 162 .. 0.73
3 ? -1.6 0.0 1 2.4e+02 372 405 .. 352 384 .. 348 395 .. 0.69
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 1.3e-05
TIGR03378 1 fDviiiGgGlaGlscalrlaeaGkktaiia 30
+Dvi++GgG aG+ +al+ a+ kkta+i+
MMSYN1_0885 5 YDVIVVGGGHAGVEAALASARLNKKTALIN 34
9***************************98 PP
== domain 2 score: -4.2 bits; conditional E-value: 6.2
TIGR03378 305 edipleakqfvlasGsfF 322
+++ l+ak++++ +G++
MMSYN1_0885 141 DQTILNAKAVIITTGTYL 158
445689999999999996 PP
== domain 3 score: -1.6 bits; conditional E-value: 1
TIGR03378 372 klrvskagktienLyaiGavlsgydpieeGcGsG 405
+l +s + k + nL+++G + g + ee +G G
MMSYN1_0885 352 QLSPSLELKDVRNLFTAGQIN-GTSGYEEAAGQG 384
5778888899********973.334444444444 PP
>> TIGR00551 nadB: L-aspartate oxidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 6.4 0.1 0.0032 0.75 2 26 .. 4 28 .. 3 43 .. 0.82
2 ! 8.2 0.0 0.00089 0.21 132 187 .. 104 156 .. 95 191 .. 0.88
Alignments for each domain:
== domain 1 score: 6.4 bits; conditional E-value: 0.0032
TIGR00551 2 eadvvviGsGaagLsaalalaekyr 26
+ dv+v+G+G ag+ aala a+ +
MMSYN1_0885 4 NYDVIVVGGGHAGVEAALASARLNK 28
579***************9987655 PP
== domain 2 score: 8.2 bits; conditional E-value: 0.00089
TIGR00551 132 stLlkkakaepkveilerevaldllietgrvvGvlvvesetvevlhakavvlatGG 187
+++ + +k++ ++++++r+ + + +++ v+G+++ + +l+akav++ tG
MMSYN1_0885 104 KYMRNVIKNQKNLDLITRACTGLVYDDNKTVTGIYLDD---QTILNAKAVIITTGT 156
677888999*********9888888889*******998...4689*********96 PP
>> TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.7 0.0 1.3e-05 0.003 2 32 .. 4 34 .. 3 49 .. 0.89
2 ? -2.7 0.0 1.1 2.7e+02 175 199 .. 135 157 .. 107 161 .. 0.71
Alignments for each domain:
== domain 1 score: 13.7 bits; conditional E-value: 1.3e-05
TIGR01816 2 kfdvvvvGaGGaGlraalelakeglktavvt 32
++dv+vvG+G aG+ aal a+ kta +
MMSYN1_0885 4 NYDVIVVGGGHAGVEAALASARLNKKTALIN 34
7*********************999999874 PP
== domain 2 score: -2.7 bits; conditional E-value: 1.1
TIGR01816 175 ialeletGeihvfrakavvlatGGa 199
+ + l++ +++akav+++tG +
MMSYN1_0885 135 TGIYLDD--QTILNAKAVIITTGTY 157
3444444..4568999****99986 PP
>> TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.3 0.1 2.1e-05 0.005 1 29 [. 6 34 .. 6 44 .. 0.93
2 ? -0.8 0.0 0.39 91 173 190 .. 140 157 .. 100 161 .. 0.65
3 ? -3.6 0.1 2.8 6.7e+02 461 485 .. 471 496 .. 438 502 .. 0.69
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 2.1e-05
TIGR01812 1 DvvivGaGlAGlraAveaakkglkvavis 29
Dv++vG+G AG+ aA++ a+ + k+a+i
MMSYN1_0885 6 DVIVVGGGHAGVEAALASARLNKKTALIN 34
9*************************996 PP
== domain 2 score: -0.8 bits; conditional E-value: 0.39
TIGR01812 173 gevvvlrakavvlatGGa 190
+ ++l+akav+++tG +
MMSYN1_0885 140 DDQTILNAKAVIITTGTY 157
3456789*********87 PP
== domain 3 score: -3.6 bits; conditional E-value: 2.8
TIGR01812 461 ellkkavkeleelke.kkkkvkikdk 485
+++++a+kel+e++ k+++ i+ k
MMSYN1_0885 471 NEIEQAIKELKEIRFtPKSQLAINLK 496
56888999999988655555555544 PP
>> TIGR02032 GG-red-SF: geranylgeranyl reductase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.5 1.2 4.3e-05 0.01 1 45 [. 5 50 .. 5 171 .. 0.63
Alignments for each domain:
== domain 1 score: 13.5 bits; conditional E-value: 4.3e-05
TIGR02032 1 yDvvvvGaGpaGssaAlrlakkGlrVlllek.kelprekeCggals 45
yDv+vvG+G aG aAl a+ +++l++ ++++ ++C +
MMSYN1_0885 5 YDVIVVGGGHAGVEAALASARLNKKTALINLyEDKIATMPCNPSVG 50
9*****************9999999999885134455577755554 PP
>> TIGR02023 BchP-ChlP: geranylgeranyl reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.9 0.2 4e-05 0.0094 1 39 [. 5 45 .. 5 63 .. 0.82
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 4e-05
TIGR02023 1 ydvlviGggpsGaaaaetLakagievillerelari..kPC 39
ydv+v+Ggg +G aa a+ +++++l++ ++i PC
MMSYN1_0885 5 YDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIatMPC 45
89**************************9866555522466 PP
>> TIGR02053 MerA: mercury(II) reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 1.3 1.2e-05 0.0029 1 150 [. 5 167 .. 5 192 .. 0.70
2 ? -3.8 0.1 4.6 1.1e+03 299 329 .. 363 392 .. 361 396 .. 0.79
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 1.2e-05
TIGR02053 1 ydlviiGsGaaafaaaikaaelgakvvlve..rGilGG.tCvn.vGCvPSK.allraaeva..klakkas.vgllaaevevdleelleqkkevveelR 90
yd++++G+G a++ aa++ a+l +k +l++ + + C vG P+K +++r ++ ++ak+a + l+++ ++ ++ + + ++++
MMSYN1_0885 5 YDVIVVGGGHAGVEAALASARLNKKTALINlyEDKIATmPCNPsVG-GPAKgIVVREIDALggEMAKAADaTALQTKLLNSSRGPGVWALRVQSDKEE 101
9*******************99999999974434454404543355.477724555555441133333334667777778888888999999999999 PP
TIGR02053 91 keKYe.dvlesydavdllegka...kfkdektvkvdl..gkevvgakrvliAtGarpavPeipGLk 150
+KY +v+++ +++dl+ ++ d+ktv ++++ +ak+v+i tG+ + + G++
MMSYN1_0885 102 YSKYMrNVIKNQKNLDLITRACtglVYDDNKTVTGIYldDQTILNAKAVIITTGTYLKSEILKGVD 167
99*96479********99755422247788888632234899999999******876666555655 PP
== domain 2 score: -3.8 bits; conditional E-value: 4.6
TIGR02053 299 pkiyAAGDvikglqlesvAakeGvvaAenal 329
++++ AG + + +e+ Aa +G +a na
MMSYN1_0885 363 RNLFTAGQINGTSGYEE-AAGQGLIAGINAS 392
67899999988888887.55689**999986 PP
>> TIGR00275 TIGR00275: flavoprotein, HI0933 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.3 0.3 0.00046 0.11 1 28 [. 7 34 .. 7 41 .. 0.88
2 ? 1.6 0.0 0.096 23 131 159 .. 126 156 .. 103 163 .. 0.77
Alignments for each domain:
== domain 1 score: 9.3 bits; conditional E-value: 0.00046
TIGR00275 1 viiiGgGaaGlmaAitaaeegakVlllE 28
vi++GgG aG+ aA++ a+ ++k +l++
MMSYN1_0885 7 VIVVGGGHAGVEAALASARLNKKTALIN 34
79*****************888888875 PP
== domain 2 score: 1.6 bits; conditional E-value: 0.096
TIGR00275 131 si.kkeeekfevet.ekkeleakkvilatGg 159
+ +++++ +++ + +++ l+ak+vi++tG
MMSYN1_0885 126 LVyDDNKTVTGIYLdDQTILNAKAVIITTGT 156
44566777889999889999**********7 PP
>> TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.1 8e-05 0.019 1 34 [. 1 34 [. 1 41 [. 0.87
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 8e-05
TIGR03143 1 teelydlvviGgGpaglsaGiyagraklkvliie 34
++ yd++v+GgG ag+ a + ++r + k+ +i+
MMSYN1_0885 1 MKSNYDVIVVGGGHAGVEAALASARLNKKTALIN 34
5677*********************988887765 PP
>> TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.7 0.1 0.0028 0.65 153 182 .. 5 34 .. 3 43 .. 0.79
2 ? 3.3 0.1 0.029 6.9 68 130 .. 98 163 .. 90 168 .. 0.60
Alignments for each domain:
== domain 1 score: 6.7 bits; conditional E-value: 0.0028
TIGR04018 153 qkvvvvGgknsavdaalelyrkgaevtlvv 182
+v+vvGg + v+aal r + + +l+
MMSYN1_0885 5 YDVIVVGGGHAGVEAALASARLNKKTALIN 34
689999999999999999888888877775 PP
== domain 2 score: 3.3 bits; conditional E-value: 0.029
TIGR04018 68 trkealeYYrrvaek.kklniklyeevekvkkkeekfevkt....ekeeyeakkvvvatGyydipnll 130
+++e +Y r+v ++ k+l++ + v + + +v+ +++ ++ak+v+++tG y + + l
MMSYN1_0885 98 DKEEYSKYMRNVIKNqKNLDLITRACTGLVYDD--NKTVTGiyldDQTILNAKAVIITTGTYLKSEIL 163
566666777777654133443333222223222..2233334445777899**********9776655 PP
>> TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.7 0.1 0.00014 0.033 2 59 .. 4 70 .. 3 170 .. 0.62
Alignments for each domain:
== domain 1 score: 10.7 bits; conditional E-value: 0.00014
TIGR01424 2 dydlfviGaGsGGvraarlaaalGakvaiaeedl...........vGGtcvirGcvPkkllvyasefae 59
+yd+ v+G+G Gv aa +a l +k a+ + + vGG +G v + + + e+a+
MMSYN1_0885 4 NYDVIVVGGGHAGVEAALASARLNKKTALINLYEdkiatmpcnpsVGGPA--KGIVVREIDALGGEMAK 70
69**************************9987766667777777777653..56666666666666554 PP
>> TIGR01438 TGR: thioredoxin and glutathione reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.1 0.5 0.00027 0.063 2 34 .. 4 36 .. 3 166 .. 0.90
Alignments for each domain:
== domain 1 score: 10.1 bits; conditional E-value: 0.00027
TIGR01438 2 dydliviGgGsGGlaaakeaaklgakvllldfv 34
+yd+iv+GgG G+ aa +a l++k +l++
MMSYN1_0885 4 NYDVIVVGGGHAGVEAALASARLNKKTALINLY 36
7***************************99865 PP
>> TIGR01372 soxA: sarcosine oxidase, alpha subunit family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.4 0.1 0.00038 0.089 169 198 .. 5 34 .. 1 61 [. 0.88
Alignments for each domain:
== domain 1 score: 8.4 bits; conditional E-value: 0.00038
TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvd 198
Dv+vvG+G aG+ aA+a ar + l++
MMSYN1_0885 5 YDVIVVGGGHAGVEAALASARLNKKTALIN 34
6*******************9887777765 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (629 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 267 (0.059492); expected 89.8 (0.02)
Passed bias filter: 188 (0.0418895); expected 89.8 (0.02)
Passed Vit filter: 52 (0.0115865); expected 4.5 (0.001)
Passed Fwd filter: 19 (0.00423351); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 19 [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.26
# Mc/sec: 3474.12
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0885 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0886 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0886.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0886/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0886 [L=525]
Description: gltP 3=Putative Transport
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each model (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (525 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 329 (0.0733066); expected 89.8 (0.02)
Passed bias filter: 69 (0.0153743); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 3769.61
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0886 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0887 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0887.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0887/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0887 [L=447]
Description: pyridine nucleotide-disulfide oxidoreductase 3=Putative Redox homeostasis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.5e-119 396.9 5.9 2.8e-119 396.7 5.9 1.0 1 TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
3.3e-46 156.0 0.7 4.1e-46 155.7 0.7 1.0 1 TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large
2.3e-33 113.6 1.1 2.3e-33 113.6 1.1 2.4 2 TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
8.9e-29 98.7 2.8 1.4e-28 98.1 0.1 2.0 2 TIGR02053 MerA: mercury(II) reductase
3.1e-27 93.2 0.1 4.9e-27 92.5 0.1 1.3 1 TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
2.4e-23 80.7 0.1 3.3e-23 80.2 0.1 1.2 1 TIGR03452 mycothione_red: mycothione reductase
3.7e-18 63.9 0.6 3.7e-18 63.9 0.6 2.1 2 TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
5.1e-18 63.5 1.5 4.4e-17 60.4 0.1 2.1 2 TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxido
1.4e-17 61.4 1.2 4.6e-15 53.2 0.3 2.2 2 TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
3e-17 60.2 0.2 4.4e-17 59.7 0.2 1.2 1 TIGR01423 trypano_reduc: trypanothione-disulfide reductase
1.2e-16 58.3 2.1 3.1e-16 56.9 0.5 2.0 2 TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F
1.4e-13 48.5 7.0 1.6e-13 48.3 2.7 2.1 2 TIGR01438 TGR: thioredoxin and glutathione reductase
2.8e-13 47.4 0.5 1.5e-12 45.0 0.5 2.2 1 TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
2.2e-11 41.2 3.9 0.00037 17.4 0.1 4.2 4 TIGR00275 TIGR00275: flavoprotein, HI0933 family
3.2e-10 37.4 0.0 0.0004 17.3 0.0 3.1 3 TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, smal
4.9e-10 35.4 0.0 1e-05 21.2 0.0 2.3 2 TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
7.9e-09 32.7 5.3 1.4e-07 28.5 0.7 3.0 2 TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidored
2.3e-07 27.7 0.0 0.0084 12.7 0.0 3.0 3 TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
9.7e-07 25.9 0.7 0.035 10.9 0.0 3.2 3 TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, U
2.6e-06 23.8 0.3 1.1e-05 21.8 0.2 1.9 1 TIGR04369 fusion_not_SelD: oxidoreductase/SelD-related fusio
6.2e-06 23.2 4.2 0.026 11.3 0.2 3.3 3 TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
7.2e-06 22.8 2.4 0.012 12.2 0.1 2.9 3 TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
6.3e-05 19.5 0.0 0.02 11.3 0.0 2.4 2 TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE famil
7.3e-05 19.9 0.4 0.042 10.8 0.2 3.5 3 TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiour
7.5e-05 19.8 0.1 0.064 10.2 0.0 2.2 2 TIGR02023 BchP-ChlP: geranylgeranyl reductase
0.00023 18.0 2.1 0.063 9.9 0.0 2.4 2 TIGR01813 flavo_cyto_c: flavocytochrome c
0.00044 17.4 1.7 1.2 6.1 0.0 3.6 4 TIGR02352 thiamin_ThiO: glycine oxidase ThiO
0.00058 16.6 0.9 1.2 5.6 0.0 3.4 3 TIGR00551 nadB: L-aspartate oxidase
0.0014 15.4 0.5 0.0014 15.4 0.5 2.0 2 TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
0.0025 14.8 1.6 0.029 11.3 0.1 2.3 2 TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
0.004 13.9 0.2 0.47 7.1 0.1 2.3 2 TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreduct
0.0056 13.9 0.3 0.96 6.6 0.1 2.9 2 TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase
0.0071 13.6 0.0 1.3 6.1 0.0 3.0 3 TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
------ inclusion threshold ------
0.014 12.3 0.2 0.026 11.5 0.0 1.6 1 TIGR03944 dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis
0.015 12.8 0.0 0.028 11.9 0.0 1.4 1 TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory pr
0.027 11.7 0.7 3 5.0 0.1 2.5 2 TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit
Domain annotation for each model (and alignments):
>> TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 396.7 5.9 2.3e-121 2.8e-119 1 438 [. 2 440 .. 2 441 .. 0.96
Alignments for each domain:
== domain 1 score: 396.7 bits; conditional E-value: 2.3e-121
TIGR03385 1 kivivGgvaaGasaAsrvrRLkkesdiivfekteivsfanCglPYfvggviedrkkllaytpekfiekkkidvktksevikvdkeektvvvknnktne 98
kivi+Gg+a+G+++Asr+++ +k+ +iiv+ k+++vs + CglPYfv + ++ lla+t+e+fie+ +i v +s v k+d+e++ v k+n+
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADKKAQIIVIQKEKYVSLGACGLPYFVANPSLKPTDLLARTVEQFIEQ-DILVYSESVVKKIDAENQKVWYE--KNNQ 96
8*************************************************9**************985.799999************98765..5667 PP
TIGR03385 99 kyeesyDkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiaki 196
e yDkL++stGAkp++++i+gi+l+++ftl +leda+++k++l++k+++kv+viG+G+igle e l++ ke++lie+++++ ++++D+ei++
MMSYN1_0887 97 LLELDYDKLVISTGAKPIVPPIKGIDLPNIFTLTRLEDATELKEKLKDKNIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNQRVFDQEITDL 194
77777********************************************************************************************* PP
TIGR03385 197 veeelekkeielrlneevksvegeekve...vltsgkvyqaDlvilavGvkPnselikssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtk 291
+e++l k+++e+ ++ +ks+ + + +l ++++ ++Dl+ila+G +P +e++k+++l++ +Gai+v+++ +t+ +ni++ GD+a++++ +t+
MMSYN1_0887 195 LEQNLIKNNVEIIKENGLKSITQTKDKRlslTLDQNEELEVDLIILAIGFRPATEFLKDTKLEMLGNGAIVVDKHGRTNLKNIWSCGDCATVYHKITN 292
*********************876543332688899999*********************************************************** PP
TIGR03385 292 keelvPlAwaanklgsivaeniaGkdiefkGvlGtsivkfldltiaktGltenelkklnidyktvevkakakanYYPgakdlllklivekdtkkilga 389
+ ++ PlA++a k +++va+ i ++ef G+l t+i k+++ ++ tG++e +k l++d+kt+++k+ ++ YYP+ ++l lkli++k+t+ ++ga
MMSYN1_0887 293 QITYTPLATVARKFAKVVADDILNVNSEFVGTLQTAILKVFESELVATGVNETLAKELGYDIKTIFIKDSDHPSYYPNPTPLALKLILNKKTNTLIGA 390
************************************************************************************************** PP
TIGR03385 390 qavGkegvlkRidvlaaaikakltv.kdltelelaYaPPysrvkDlvnli 438
q+ G + + Ri+ l i +++ + ++lt+++l Y+PP+srv D++ ++
MMSYN1_0887 391 QMYGSNLSVLRINFLISLIWNQIEInQELTQVDLPYSPPFSRVVDIIHIA 440
**********************986379*******************885 PP
>> TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 155.7 0.7 3.3e-48 4.1e-46 1 392 [. 3 419 .. 3 427 .. 0.83
Alignments for each domain:
== domain 1 score: 155.7 bits; conditional E-value: 3.3e-48
TIGR02374 1 lvlvGnGmvGvrlieevlkkddkdefeitvfgeepdaaydrvlLssvlqeadle..dltLnskdyyekhgikllvnervikidreeksvitdagrt.. 94
+v++G G+ + ++k d ++ +i+v+ +e ++ +L ++ + +l+ dl + + + +++i ++ + v kid e+++v +++ +
MMSYN1_0887 3 IVIIGGAASGMTVASRLKKAD--KKAQIIVIQKEKYVSLGACGLPYFVANPSLKptDLLARTVEQFIEQDILVYSESVVKKIDAENQKVWYEKNNQll 98
689998888888777766655..8889******************9998666541144334444455689*******************988876522 PP
TIGR02374 95 .lsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaa..akrtkkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLq 189
l yDkL+++tG+ p ++Pi+G D +++f+ +eD l+ k++kk aviG+G++GLe + L+++ ++ ie +++l ++ +Dq + lL+
MMSYN1_0887 99 eLDYDKLVISTGAKPIVPPIKGIDLPNIFTLTRLEDATELKEKlkDKNIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNQRVFDQEITDLLE 196
258*************************************9862257899************************************************ PP
TIGR02374 190 relekkGltvlleketveivkesvekaerlrfkDGssleadlvvlaaGirPrdeLaaeaGlkvndrrGiivndsmqtsdPdiyavGecaeh.....ng 282
++l k+ + + e+ +i++ + +k+ +l + ++le+dl++la+G rP +e+ +++ l++ + i+v+++ +t+ +i++ G+ca + n
MMSYN1_0887 197 QNLIKNNVEIIKENGLKSITQTK-DKRLSLTLDQNEELEVDLIILAIGFRPATEFLKDTKLEMLGNGAIVVDKHGRTNLKNIWSCGDCATVyhkitNQ 293
*********98777666666666.9999************************************9************************852233356 PP
TIGR02374 283 rvyG.LvaPlyeqakvladhllgveeeyegadlsakLkllGvdvasaGdaqgete....eaksikilDeqkeiyk........klvlsddkktllGav 367
++y L + + akv+ad +l+v+ e+ g+ +a Lk+ + ++ G + + + k+i i D + y kl+l++ +tl+Ga
MMSYN1_0887 294 ITYTpLATVARKFAKVVADDILNVNSEFVGTLQTAILKVFESELVATGVNETLAKelgyDIKTIFIKDSDHPSYYpnptplalKLILNKKTNTLIGAQ 391
6786244456788******************************99999765433312225678888998887773344444459************** PP
TIGR02374 368 LvGDtsdk...grLldlvlkeaelsedp 392
++G + + L++l+ +++e+ ++
MMSYN1_0887 392 MYGSNLSVlriNFLISLIWNQIEINQEL 419
***9876522267899999999998765 PP
>> TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.9 0.6 0.068 8.5 3 34 .. 2 35 .. 1 43 [. 0.67
2 ! 113.6 1.1 1.8e-35 2.3e-33 117 416 .. 87 400 .. 56 423 .. 0.79
Alignments for each domain:
== domain 1 score: 2.9 bits; conditional E-value: 0.068
TIGR01350 3 dvvviGgGpgGYvaAira..aqlglkvalvekek 34
+v+iGg +G + A r a ++ ++++++kek
MMSYN1_0887 2 KIVIIGGAASGMTVASRLkkADKKAQIIVIQKEK 35
5788888888887776541166666677777766 PP
== domain 2 score: 113.6 bits; conditional E-value: 1.8e-35
TIGR01350 117 kevevkkekkekkleakniiiAtGseprelplk.leedek.vvitseealelke.....vpeslvivGgGviGvEfasifaklGvkvtvielldrilp 207
++v +k+++ +l++++++i tG++p+ +p+k ++ + +++ e+a elke ++++++G+G iG+E +++++ ++ +ie ++r+ +
MMSYN1_0887 87 QKVWYEKNNQLLELDYDKLVISTGAKPIVPPIKgIDLPNIfTLTRLEDATELKEklkdkNIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNQ 184
3444455554467789****************9966555434445566666654111115789*********************************76 PP
TIGR01350 208 .aldaevskvlkkklkkkgvkiltnakvtevekeedevv.veakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiy 303
++d+e++++l+++l k++v+i+++ ++++++++d+ ++ +++ e+le++ +++a+G++p +e l+ + +e+ +gai+vd++ rtn+++i+
MMSYN1_0887 185 rVFDQEITDLLEQNLIKNNVEIIKENGLKSITQTKDKRLsLTLDQN--EELEVDLIILAIGFRPATE--FLKDTKLEMLGNGAIVVDKHGRTNLKNIW 278
378**************************99887766552666666..89*****************..9**************************** PP
TIGR01350 304 aiGDv..........igklmLAhvAskegvvaaekiagkekseidykavPsviytePevasvGlteeqakeegievkvgkfpfaangkalaleetdGf 391
+GD+ i + LA vA k + v+a+ i++ +++ + + + e e+ + G++e+ ake g+++k+ ++ + + + t
MMSYN1_0887 279 SCGDCatvyhkitnqITYTPLATVARKFAKVVADDILNVNSEFVGTLQTAILKVFESELVATGVNETLAKELGYDIKTIFIKDS-DHPSYYPNPTPLA 375
****8322222211122356******************988744444443333346688888**************98866544.4457777889999 PP
TIGR01350 392 vkvivdkktgeilGahivgaeasel 416
+k+i++kkt++++Ga++ g + s l
MMSYN1_0887 376 LKLILNKKTNTLIGAQMYGSNLSVL 400
9******************998755 PP
>> TIGR02053 MerA: mercury(II) reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.7 0.4 0.38 47 2 30 .. 2 32 .. 1 41 [. 0.57
2 ! 98.1 0.1 1.1e-30 1.4e-28 129 411 .. 101 396 .. 67 420 .. 0.80
Alignments for each domain:
== domain 1 score: 0.7 bits; conditional E-value: 0.38
TIGR02053 2 dlviiGsGaaaf..aaaikaaelgakvvlve 30
++viiG+ a+++ a+ +k a++ a++++++
MMSYN1_0887 2 KIVIIGGAASGMtvASRLKKADKKAQIIVIQ 32
5666666666541134455555556666554 PP
== domain 2 score: 98.1 bits; conditional E-value: 1.1e-30
TIGR02053 129 gakrvliAtGarpavPeipGLkeaeyltseel.....le...ldkipeslvviGggaiavElaqlfarlGsevtllqrserllkee.epeisaaveel 217
+++++i tGa+p vP+i G++ +++t ++l l+ +dk +++++viG+g i++E +++ e++l+++++rl ++ ++ei+ +e+
MMSYN1_0887 101 DYDKLVISTGAKPIVPPIKGIDLPNIFTLTRLedateLKeklKDKNIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNQRVfDQEITDLLEQN 198
35669***************9988866654431111122122356679**********************************988549********** PP
TIGR02053 218 laeeGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglq... 312
l ++ ve++k+ +k++ ++++++ +t+++ ++e+e+d +++A G +p ++ L+ + ++ +G i+vd++ rt+ ++i+ GD+ + +
MMSYN1_0887 199 LIKNNVEIIKENGLKSITQTKDKRLSLTLDQ---NEELEVDLIILAIGFRPATE--FLKDTKLEMLGNGAIVVDKHGRTNLKNIWSCGDCATVYHkit 291
*******************865555555555...69******************..567777777899*********************976644466 PP
TIGR02053 313 .......lesvAakeGvvaAenalggaeakl.d.levlPkvvFtdPevAsvGlteeelakagievesrtvkleavpralinretrGliKlvaeketkk 401
l +vA k v+A+ +l+ + ++ l++ vF + e+ + G+ e+ +++ g+++++ +k ++ p + n +Kl+ +k+t+
MMSYN1_0887 292 nqitytpLATVARKFAKVVADDILN-VNSEFvGtLQTAILKVFES-ELVATGVNETLAKELGYDIKTIFIKDSDHPSYYPNPTPL-ALKLILNKKTNT 386
788899999**************99.5666513123333346665.55556**99999999888888777777777666554443.57********** PP
TIGR02053 402 vlgvqvvaee 411
++g+q+ + +
MMSYN1_0887 387 LIGAQMYGSN 396
******9876 PP
>> TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 92.5 0.1 3.9e-29 4.9e-27 128 409 .. 99 398 .. 68 410 .. 0.78
Alignments for each domain:
== domain 1 score: 92.5 bits; conditional E-value: 3.9e-29
TIGR01424 128 tytaekiliavGgrpvkpelPGael....aits.deafdletl.....PksilvvGgGyiavefagifrGlGvkvtllyrgeki.lrgfdddvraela 214
++ +k++i++G++p+ p + G +l ++t ++a +l++ k+++v+G+G+i+ e ++++ + ++ l+ + +++ r fd+++ l+
MMSYN1_0887 99 ELDYDKLVISTGAKPIVPPIKGIDLpnifTLTRlEDATELKEKlkdknIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLnQRVFDQEITDLLE 196
456789****************997432245543678888764222125789**************************9988762567********** PP
TIGR01424 215 eeleerGirillktvlksiekvddG.lkvtlskdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGd.......vtd 304
++l ++ ++i+ ++ lksi++++d l tl ++ee++ d ++la+G P ++ l ++ +e+ +gai+vd++ rt+ ++i++ Gd +t+
MMSYN1_0887 197 QNLIKNNVEIIKENGLKSITQTKDKrLSLTLDQNEELEVDLIILAIGFRPATEFL--KDTKLEMLGNGAIVVDKHGRTNLKNIWSCGDcatvyhkITN 292
**********************999677788899******************986..577789999*********************9666555569* PP
TIGR01424 305 rinltPvaikeaaafaetefkn..nptkadhdlvatavfs..qPevatvGlseeearekftddievyraefrPmkatlsGrqekillklvvdekddkv 398
+i tP+a a+ fa+ + n ++ ++ ta++ + e+ + G+ e a+e + di+++ + + +++ + lkl++++k++ +
MMSYN1_0887 293 QITYTPLATV-ARKFAKVVADDilNVNSEFVGTLQTAILKvfESELVATGVNETLAKEL-GYDIKTIFIK-DSDHPSYYPNPTPLALKLILNKKTNTL 387
******9864.555655443331123333334556666541156778889999888765.5888877654.34456889999999************* PP
TIGR01424 399 lGahvvGedaa 409
+Ga++ G + +
MMSYN1_0887 388 IGAQMYGSNLS 398
*******9865 PP
>> TIGR03452 mycothione_red: mycothione reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 80.2 0.1 2.7e-25 3.3e-23 129 426 .. 96 414 .. 56 440 .. 0.77
Alignments for each domain:
== domain 1 score: 80.2 bits; conditional E-value: 2.7e-25
TIGR03452 129 e...itadqvviaaGsrpvipea..iaesgvryyt.nedimrlpel.....peslvivGgGyialefahvfsalGtkvtlvarsekll.rkldedise 214
+ + d++vi++G++p++p++ i ++ t ed l+e +++ ++G+G+i le ++++ + ++ l+ ++++l r d++i++
MMSYN1_0887 96 QlleLDYDKLVISTGAKPIVPPIkgIDLPNIFTLTrLEDATELKEKlkdknIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNqRVFDQEITD 193
433477899************96334444443333146666665541111146789***************************99997256799***9 PP
TIGR03452 215 rft.elakkkfdvrlgrnvtaaeqdddg.vtlelddGstveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvsspyq. 309
++ +l k+++++ +++ + + +q++d+ ++l+ld+ +++e d++++a+G p ++ l+ + +e+ +g + vd+++rt +++++ Gd ++ y+
MMSYN1_0887 194 LLEqNLIKNNVEIIKENGLKSITQTKDKrLSLTLDQNEELEVDLIILAIGFRPATEFLK--DTKLEMLGNGAIVVDKHGRTNLKNIWSCGDCATVYHk 289
9852689999***9999999987766555***************************986..5679999************************999864 PP
TIGR03452 310 .........lkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqdygdvayGwamedteglakliadkdtG 398
l va + a+vv++++l+ ++ + ++ vf + + G+ e+ a+e G+di++ + +d + + t kli +k+t
MMSYN1_0887 290 itnqitytpLATVARKFAKVVADDILNVNSEFVGTLQTAILKVFESELV-ATGVNETLAKELGYDIKTIFIKDSDHPS-YYPNPTPLALKLILNKKTN 385
4333334446677888888888888877777777777777788876655.56**************998888888654.3457788889********* PP
TIGR03452 399 kllGahiiGaqassl.iqqlitalafgld 426
l+Ga + G++ s l i+ li + +++
MMSYN1_0887 386 TLIGAQMYGSNLSVLrINFLISLIWNQIE 414
***********999856666666555555 PP
>> TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.7 0.3 0.45 57 5 35 .. 3 35 .. 1 43 [. 0.69
2 ! 63.9 0.6 3e-20 3.7e-18 130 325 .. 102 310 .. 59 406 .. 0.72
Alignments for each domain:
== domain 1 score: 0.7 bits; conditional E-value: 0.45
TIGR01421 5 ylviGGGsGGiasarr..aaeyGakallveekk 35
+++iGG + G++ a r a+ a++++++++k
MMSYN1_0887 3 IVIIGGAASGMTVASRlkKADKKAQIIVIQKEK 35
689999999976666611566777777877665 PP
== domain 2 score: 63.9 bits; conditional E-value: 3e-20
TIGR01421 130 akhiliatGgkpsipeniPGaelg.....ldsdgffaleel.....PkrvvivGaGyiavelaGvlhglGsktdlvirrerv.lrsfdelisekvvee 216
++++i+tG+kp++p i G +l + ++ +l+e k+v+++G+G+i++e +l+ + + l+ + r r fd+ i++ + ++
MMSYN1_0887 102 YDKLVISTGAKPIVP-PIKGIDLPniftlTRLEDATELKEKlkdknIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLnQRVFDQEITDLLEQN 198
56899*********9.6666665321111455666666664222224799***********************9999988852699************ PP
TIGR01421 217 lekaglevhklskvvkvektvegklvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGd.......vvGk 307
l k+++e+ k + ++ + +t +++l tl++ e +vd +i aiG +p+t+ l+ +++++ +g i vd++ tn ++i++ Gd ++ +
MMSYN1_0887 199 LIKNNVEIIKENGLKSITQTKDKRLSLTLDQN-EELEVDLIILAIGFRPATEFLKD--TKLEMLGNGAIVVDKHGRTNLKNIWSCGDcatvyhkITNQ 293
****************************9999.8899**************98865..566677889*******************944433333456 PP
TIGR01421 308 veltPvaiaaGrklserl 325
+ tP+a a rk+++ +
MMSYN1_0887 294 ITYTPLATVA-RKFAKVV 310
6778877655.4544443 PP
>> TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.2 0.2 0.18 22 147 186 .. 2 37 .. 1 43 [. 0.84
2 ! 60.4 0.1 3.6e-19 4.4e-17 75 287 .. 78 289 .. 59 295 .. 0.83
Alignments for each domain:
== domain 1 score: 2.2 bits; conditional E-value: 0.18
TIGR03169 147 kvaviGgGvaGvElalamahrlkealkeaevtliergeel 186
k+++iGg ++G +++a rlk+a k+a++ +i++++ +
MMSYN1_0887 2 KIVIIGGAASG----MTVASRLKKADKKAQIIVIQKEKYV 37
68899999988....678899************9998765 PP
== domain 2 score: 60.4 bits; conditional E-value: 3.6e-19
TIGR03169 75 kvigldleakkvivekrpp...iaydvlsidiGstpeleevegaaehaipvKPlaqfaeaweellekakqekqkakvaviGgGvaGvElalamahrlk 169
v ++d+e++kv ek+++ + yd l i +G++p ++ ++g++ i l+++ +a +el ek k +k+ +kvaviG+G G E m ++++
MMSYN1_0887 78 VVKKIDAENQKVWYEKNNQlleLDYDKLVISTGAKPIVPPIKGIDLPNIFT--LTRLEDA-TELKEKLK-DKNIKKVAVIGSGFIGLECC-EMLEHFN 170
4678********999887522269********************9776653..5555444.55666666.67789************975.4444554 PP
TIGR03169 170 ealkeaevtliergeellsg.lnakvrkklekalkekgvelleeaevaevtee.....avrledgeeleadlvlgvagara.qkwlaesgleldekGf 260
e+ lie+ ++l ++ +++++ + le++l +++ve+++e+ ++t++ +++l+++eele+dl++ + g r+ +++l++++le+ +G
MMSYN1_0887 171 -----KEIVLIEKTSRLNQRvFDQEITDLLEQNLIKNNVEIIKENGLKSITQTkdkrlSLTLDQNEELEVDLIILAIGFRPaTEFLKDTKLEMLGNGA 263
.....5899******998652688999*****************9999888876666668999***************997268************** PP
TIGR03169 261 ievdetLqslsdpeifAaGDvAalvea 287
i vd++ ++ + ++i+++GD+A++ ++
MMSYN1_0887 264 IVVDKHGRT-NLKNIWSCGDCATVYHK 289
********9.999**********9876 PP
>> TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.0 0.0 0.0041 0.51 2 112 .. 2 113 .. 1 122 [. 0.65
2 ! 53.2 0.3 3.7e-17 4.6e-15 142 281 .. 148 289 .. 142 304 .. 0.76
Alignments for each domain:
== domain 1 score: 7.0 bits; conditional E-value: 0.0041
TIGR01292 2 dviiiGaGpaGltaaiYaaranlk..tlliegkeag..gqlttttevenyPGfkegisgselmekmkeqakkfgaeiilee.vkkvdkkerpfkvlte 94
+++iiG+ ++G+t a ++a+ k ++i++++ g+ + v n P +++ ++l+ + eq + + + +e+ vkk+d +++ ++ + +
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADKKaqIIVIQKEKYVslGACGLPYFVAN-P----SLKPTDLLARTVEQFIEQDILVYSESvVKKIDAENQ-KVWYEK 93
79*************9998887772134444333324455555555555.3....356788888888888888888887551566666554.333434 PP
TIGR01292 95 ..dekeykakaviiAtGaka 112
+ e + ++i+tGak+
MMSYN1_0887 94 nnQLLELDYDKLVISTGAKP 113
12345677889999999986 PP
== domain 2 score: 53.2 bits; conditional E-value: 3.7e-17
TIGR01292 142 kevavvGggdsAveealyLskiakkVtlvhrrdklraeki...llerlkkne...kievllnstveeikGde.kvesvkikntktkeeeelkvdgvFi 232
k+vav+G+g +e +L+++ k+++l+ ++++l + + +++ l++n ++e++ ++ ++ i+ ++ k s++ +++eel+vd + +
MMSYN1_0887 148 KKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNQRVFdqeITDLLEQNLiknNVEIIKENGLKSITQTKdKRLSLT-----LDQNEELEVDLIIL 240
89****************************9988865433111333333321222677777777776665442333333.....346789******** PP
TIGR01292 233 aiGhepntellkel.leldeegyivvdeemrTsveGvfaaGDvrdkslrQ 281
aiG++p+te+lk++ le+ +g ivvd++ rT+++ ++++GD+ + +++
MMSYN1_0887 241 AIGFRPATEFLKDTkLEMLGNGAIVVDKHGRTNLKNIWSCGDCAT-VYHK 289
*************99****************************87.3433 PP
>> TIGR01423 trypano_reduc: trypanothione-disulfide reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 59.7 0.2 3.5e-19 4.4e-17 148 337 .. 98 300 .. 79 333 .. 0.82
Alignments for each domain:
== domain 1 score: 59.7 bits; conditional E-value: 3.5e-19
TIGR01423 148 erldaeyillatgswpqmlkiegiel....ciss.neafylee.....apkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrk 235
ld + ++++tg+ p i+gi+l ++ ++a l+e + k+v ++g g+i +e + +++ ++ ++ + r + r fd+e+ +
MMSYN1_0887 98 LELDYDKLVISTGAKPIVPPIKGIDLpnifTLTRlEDATELKEklkdkNIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLN--QRVFDQEITD 193
458899999*******99999999973322334325677666512111568999*****************998877777777766..599******* PP
TIGR01423 236 eltkqlvangidvrtnenpakveknadgskhvvfesgkeldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigd....... 326
l ++l n +++ ++ +++ d ++++ +el+vd+++laig p +++l+ + +e+ +gai vd++ +tn++ni++ gd
MMSYN1_0887 194 LLEQNLIKNNVEIIKENGLKSITQTKDKRLSLTLDQNEELEVDLIILAIGFRPATEFLK--DTKLEMLGNGAIVVDKHGRTNLKNIWSCGDcatvyhk 289
*************99988999********************************999976..556899***********************94443333 PP
TIGR01423 327 vtdrvmltpva 337
+t+++ tp+a
MMSYN1_0887 290 ITNQITYTPLA 300
45666666665 PP
>> TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.4 0.0 0.34 43 269 322 .. 59 112 .. 2 115 .. 0.62
2 ! 56.9 0.5 2.5e-18 3.1e-16 353 492 .. 148 289 .. 145 300 .. 0.86
Alignments for each domain:
== domain 1 score: 0.4 bits; conditional E-value: 0.34
TIGR03140 269 laanleehikeynidvleeqkvkkieteeeakevelesG.evlkaksvivatGak 322
la+ +e+ i+ +i v e vkki+ e+++ e ++ l+ + ++++tGak
MMSYN1_0887 59 LARTVEQFIE-QDILVYSESVVKKIDAENQKVWYEKNNQlLELDYDKLVISTGAK 112
4555555554.46788888888888655554444433321346677888888886 PP
== domain 2 score: 56.9 bits; conditional E-value: 2.5e-18
TIGR03140 353 kkvaviGGGnsGieaaidlaGivehvtvlefadelka...dkv...lveklkslsnvdiltsaktkeivgdgdkvtglkykdrsseeekkleldGvfv 444
kkvaviG G G+e l ++++++e +++l d+ l+e+ ++nv+i+ + k+i+ ++dk +l++ +++++le+d + +
MMSYN1_0887 148 KKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNQrvfDQEitdLLEQNLIKNNVEIIKENGLKSITQTKDKRLSLTL-----DQNEELEVDLIIL 240
9******************************999975334665122344444589**************99888777755.....6678899999*** PP
TIGR03140 445 qiGlvpnteflkda.velnrrGeividergrtsvkGifaaGdvttvpyk 492
iG+ p teflkd+ +e+ G iv+d++grt++k i+++Gd++tv +k
MMSYN1_0887 241 AIGFRPATEFLKDTkLEMLGNGAIVVDKHGRTNLKNIWSCGDCATVYHK 289
*************98******************************9877 PP
>> TIGR01438 TGR: thioredoxin and glutathione reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.5 0.1 0.1 12 5 33 .. 3 33 .. 1 50 [. 0.71
2 ! 48.3 2.7 1.3e-15 1.6e-13 117 344 .. 74 316 .. 57 363 .. 0.71
Alignments for each domain:
== domain 1 score: 2.5 bits; conditional E-value: 0.1
TIGR01438 5 liviGgGsGGlaaakea..aklgakvllldf 33
+++iGg + G++ a + a+ a+++++
MMSYN1_0887 3 IVIIGGAASGMTVASRLkkADKKAQIIVIQK 33
799********99887611555556666655 PP
== domain 2 score: 48.3 bits; conditional E-value: 1.3e-15
TIGR01438 117 yinayaelvdkd.vikatdkkkkeeilsakrvliatGlrpkypddieGak...elsits.ddlfslk.....kvpGktlvvGasyvalecaGflaalg 204
y +++ + +d + + ++k+++ l ++++i+tG +p +p i+G +++t +d lk k k v+G++++ lec+ +l+ ++
MMSYN1_0887 74 YSESVVKKIDAEnQKVWYEKNNQLLELDYDKLVISTGAKPIVPP-IKGIDlpnIFTLTRlEDATELKeklkdKNIKKVAVIGSGFIGLECCEMLEHFN 170
5555555555442333456666666678899**********995.8887411134555346777766222123456788******************* PP
TIGR01438 205 ldvtvlvrsill..rGfdqdcavkvkeylkeqGvkfkeqvlpkkvekveakvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgk 300
+++ ++ ++ l r fdq+++ +++ l ++ v ++++ k +++ ++k l d++ e e d +++aiG ++ ++ l+ ++++ +g
MMSYN1_0887 171 KEIVLIEKTSRLnqRVFDQEITDLLEQNLIKNNVEIIKENGLKSITQTKDKRLSLTLDQN--EELEVDLIILAIGFRPATEFLKDTKLEML---GNGA 263
**99988765553389**********************************9998888655..78899**************9998888886...5799 PP
TIGR01438 301 iladelertnvpsiyavGdive......dkleltpvai...kaGklladrlfk 344
i++d+ rtn+++i++ Gd + ++ tp+a k k++ad + +
MMSYN1_0887 264 IVVDKHGRTNLKNIWSCGDCATvyhkitNQITYTPLATvarKFAKVVADDILN 316
*******************8642212215555566554111445666665544 PP
>> TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.0 0.5 1.2e-14 1.5e-12 135 425 .. 2 284 .. 1 296 [. 0.76
Alignments for each domain:
== domain 1 score: 45.0 bits; conditional E-value: 1.2e-14
TIGR01316 135 kvaviGaGpaGlavaselakkGhevtvfeal.hkpGGvlayGipef....rl.pkeivetevkklkklGvkfrldylvGk......tvtl...eelle 217
k+ +iG +G++vas l k+ + ++ +k + a G+p f l p +++ v+++ + ++ + +v k +v ++lle
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADKKAQIIVIQkEKYVSLGACGLPYFvanpSLkPTDLLARTVEQFIEQDILVYSESVVKKidaenqKVWYeknNQLLE 99
67788888888888888888888877654321343344445555441111333567888888888888888888888876222211222211134444 PP
TIGR01316 218 .kydavfigtGaGlpkllnieGeelkgvysandfltrvnlmkayefpkkdtpvevgkkvvviGgGntavdaartalrlGaevhvvyrrtredmtaree 314
+yd + i+tGa +p + i+G++l ++++ ltr l a e+ +k + kkv viG+G++ ++++ + e+ ++ + +r + ++
MMSYN1_0887 100 lDYDKLVISTGA-KPIVPPIKGIDLPNIFT----LTR--LEDATELKEKLKD-KNIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNQRVFDQ 189
389********9.799999*********97....676..5577777766544.44599**************************************** PP
TIGR01316 315 eikhaeeeGvkfefllqpveviGdeeGevkavkfektelqeerdsgekrkvpvtdeevkleadavivaiGqeankiiaedsslktskrGtivvdedle 412
ei ++ e+ + + + ve+i e+G +k + +++++kr + d++ le+d +i+aiG ++ +d++l++ +G+ivvd++ +
MMSYN1_0887 190 EITDLLEQ----NLIKNNVEIIK-ENG----LKSI-------TQTKDKRLSLTLDQNEELEVDLIILAIGFRPATEFLKDTKLEMLGNGAIVVDKHGR 271
**999887....46788999995.555....4554.......44566777778899999*************************************** PP
TIGR01316 413 tsieGvfaGGdvi 425
t+++ +++ Gd
MMSYN1_0887 272 TNLKNIWSCGDCA 284
***********75 PP
>> TIGR00275 TIGR00275: flavoprotein, HI0933 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.5 0.5 0.00036 0.045 1 32 [. 3 36 .. 3 40 .. 0.88
2 ? 3.6 0.0 0.046 5.7 114 160 .. 64 112 .. 46 117 .. 0.75
3 ! 8.1 0.0 0.002 0.25 1 36 [. 150 185 .. 150 188 .. 0.93
4 ! 17.4 0.1 3e-06 0.00037 106 159 .. 189 244 .. 183 259 .. 0.92
Alignments for each domain:
== domain 1 score: 10.5 bits; conditional E-value: 0.00036
TIGR00275 1 viiiGgGaaGlmaAitaae..egakVlllEknkk 32
++iiGg a+G++ A ++++ ++a+++++ k+k
MMSYN1_0887 3 IVIIGGAASGMTVASRLKKadKKAQIIVIQKEKY 36
79************99999778899999999875 PP
== domain 2 score: 3.6 bits; conditional E-value: 0.046
TIGR00275 114 kelkelgvevlteskvksikkeeekfevet..ekkeleakkvilatGgk 160
++ e+ + v+ es vk+i+ e++k+ e + el ++k++++tG k
MMSYN1_0887 64 EQFIEQDILVYSESVVKKIDAENQKVWYEKnnQLLELDYDKLVISTGAK 112
445567899999*******777777777773355578899*******86 PP
== domain 3 score: 8.1 bits; conditional E-value: 0.002
TIGR00275 1 viiiGgGaaGlmaAitaaeegakVlllEknkkigkK 36
v++iG G Gl + ++++ +++++l+Ek++++ +
MMSYN1_0887 150 VAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNQR 185
79****************************998765 PP
== domain 4 score: 17.4 bits; conditional E-value: 3e-06
TIGR00275 106 ksvldaLlkelkelgvevlteskvksi.kkeeekfevet.ekkeleakkvilatGg 159
++++d+L+++l +++ve+ e +ksi + +++++++++ +++ele++ +ila G
MMSYN1_0887 189 QEITDLLEQNLIKNNVEIIKENGLKSItQTKDKRLSLTLdQNEELEVDLIILAIGF 244
79*************************9999999*****999************96 PP
>> TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.2 0.0 0.031 3.8 145 266 .. 2 137 .. 1 148 [. 0.64
2 ! 17.3 0.0 3.2e-06 0.0004 140 214 .. 144 218 .. 139 225 .. 0.88
3 ! 13.1 0.0 6e-05 0.0075 397 454 .. 229 284 .. 219 294 .. 0.85
Alignments for each domain:
== domain 1 score: 4.2 bits; conditional E-value: 0.031
TIGR01317 145 kvavvGsGPaGlaaadqlnraGht..vtvferedrvGGl....lryGiPnlkldke.iverridlleaeGvdfvtnveiG..........kdisaeel 225
k+ ++G +G++ a +l++a ++ + v ++e l l y + n l+ + + r ++++ ++ + ++ + + + + l
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADKKaqIIVIQKEKY-VSLgacgLPYFVANPSLKPTdLLARTVEQFIEQDILVYSESVVKkidaenqkvwYEKNNQLL 98
788999999***********987622556655554.34400124455555556544478899998887777766666555566666544444455567 PP
TIGR01317 226 kedfdavvlatGatkprdlpieGrelegihyamefleaatk 266
d+d +v++tGa+ p pi+G +l +i +++ le at
MMSYN1_0887 99 ELDYDKLVISTGAK-PIVPPIKGIDLPNI-FTLTRLEDATE 137
78999999999996.45568999999988.55555655554 PP
== domain 2 score: 17.3 bits; conditional E-value: 3.2e-06
TIGR01317 140 krtGkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGll.ryGiPnlkldkeiverridlleaeGvdfvtnv 214
+ kkvav+GsG Gl + ++l++ +++ + e+ r + i +l l+++ ++ +++++++G++ +t++
MMSYN1_0887 144 DKNIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNQRVfDQEITDL-LEQNLIKNNVEIIKENGLKSITQT 218
56679*********************************9875516778887.9****************9988877 PP
== domain 3 score: 13.1 bits; conditional E-value: 6e-05
TIGR01317 397 seevleadlvllalGfvgpeqallddlgvdkdergnikaeldesetsidGvfaaGdar 454
+e+le dl++la+Gf p ++ l+d+++++ +g i +++ +t+++ ++++Gd+
MMSYN1_0887 229 QNEELEVDLIILAIGFR-PATEFLKDTKLEMLGNGAIVVDKH-GRTNLKNIWSCGDCA 284
567899**********7.778899************955544.45***********96 PP
>> TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.5 0.0 3.4e-05 0.0043 526 604 .. 136 214 .. 128 230 .. 0.83
2 ! 21.2 0.0 8e-08 1e-05 751 826 .. 221 295 .. 215 322 .. 0.85
Alignments for each domain:
== domain 1 score: 12.5 bits; conditional E-value: 3.4e-05
TIGR03315 526 eklekpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekag.GvvkniiPefrisaeviqkdlelvkkkGvef 604
++l++ ++++ +kvaviG+G Gl + +l ++ ++ek ++ v ++ i ++ + +++i++++e++k++G +
MMSYN1_0887 136 TELKEKLKDKNIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNqRVFDQEITDL-LEQNLIKNNVEIIKENGLKS 214
4566666777888******************************9886516788899987.89***************975 PP
== domain 2 score: 21.2 bits; conditional E-value: 8e-08
TIGR03315 751 rrrpvetgelveleadaviaavGeqvdtellkklgieldekgkvvvneetketsvtnvfviGdakkGPativeaia 826
+r ++ ++ ele+d +i+a+G + te+lk +++e+ +g +vv+++ + t+++n++ Gd + i + i+
MMSYN1_0887 221 KRLSLTLDQNEELEVDLIILAIGFRPATEFLKDTKLEMLGNGAIVVDKH-GRTNLKNIWSCGDCATVYHKITNQIT 295
566777788889************************************9.99***********9987777777665 PP
>> TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 6.1 1.1 0.0081 1 154 249 .. 2 113 .. 1 123 [. 0.55
2 ! 28.5 0.7 1.2e-09 1.4e-07 84 293 .. 68 288 .. 39 315 .. 0.72
Alignments for each domain:
== domain 1 score: 6.1 bits; conditional E-value: 0.0081
TIGR04018 154 kvvvvGgknsavdaalelyrkg..aevtlvvrgeelse...kvkyWv.....kp.dlenrik....egkikalfesevkeie..eesvtletpegeve 234
k+v++Gg+ s + +a l++++ a++ ++ +++ +s + y+v kp dl +r e+ i ++ es vk+i+ +++v++e+ +++
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADkkAQIIVIQKEKYVSLgacGLPYFVanpslKPtDLLARTVeqfiEQDILVYSESVVKKIDaeNQKVWYEK-NNQLL 98
78999999998888877776651155555555555543111234444211112223333322011145677778888888852145677777.44444 PP
TIGR04018 235 eiendfvlaltGyrp 249
e++ d +++ tG +p
MMSYN1_0887 99 ELDYDKLVISTGAKP 113
777777777777666 PP
== domain 2 score: 28.5 bits; conditional E-value: 1.2e-09
TIGR04018 84 klniklyee..vekvkkkee..kfevktekeeyeakkvvvatGyydipnllnvpGedlpkvshy..ykeahpyvk.......qkvvvvGgknsavdaa 168
+ +i +y e v+k++ +++ +e + + e++ k+v++tG +p ++G dlp++ ++a + + +kv+v+G+ +
MMSYN1_0887 68 EQDILVYSEsvVKKIDAENQkvWYEKNNQLLELDYDKLVISTGA--KPIVPPIKGIDLPNIFTLtrLEDATELKEklkdkniKKVAVIGSGFIGLECC 163
55555555433455555553112333334446677788888885..66667777888887764311456655443111222268************** PP
TIGR04018 169 lelyrkgaevtlvvrgeelsekvk.yWvkpdlenrikegkikalfesevkeieees.vtletpegeveeiendfvlaltGyrpdlelleklgveleed 264
l++ + e+ l+ + ++l+++v + le+ + ++++++ e +k+i++++ +l+ + ++ ee+e d +++ +G+rp +e+l+++ +e+ +
MMSYN1_0887 164 EMLEHFNKEIVLIEKTSRLNQRVFdQEITDLLEQNLIKNNVEIIKENGLKSITQTKdKRLSLTLDQNEELEVDLIILAIGFRPATEFLKDTKLEMLGN 261
99********************96155777778888888999999999999987652445555667778**************************999 PP
TIGR04018 265 ekipvydeetmEtnveglylaGvvaagle 293
++ v+d++ tn+++++ +G +a+ ++
MMSYN1_0887 262 -GAIVVDKH-GRTNLKNIWSCGDCATVYH 288
.55566655.79**********9887665 PP
>> TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.8 0.0 0.28 34 143 187 .. 2 47 .. 1 67 [. 0.73
2 ! 9.9 0.0 0.00045 0.056 139 175 .. 145 181 .. 137 214 .. 0.76
3 ! 12.7 0.0 6.7e-05 0.0084 382 441 .. 230 284 .. 214 290 .. 0.84
Alignments for each domain:
== domain 1 score: 0.8 bits; conditional E-value: 0.28
TIGR01318 143 rvaviGaGpaGlacadvlaraGvkvvvfd.rypeiGGlltfGipsf 187
++ +iG+ +G++ a +l++a k+++ + ++ l G+p f
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADKKAQIIViQKEKYVSLGACGLPYF 47
7899***************998776543212333334555555555 PP
== domain 2 score: 9.9 bits; conditional E-value: 0.00045
TIGR01318 139 ktgkrvaviGaGpaGlacadvlaraGvkvvvfdrype 175
k+ k+vaviG+G Gl c ++l ++v+ ++ +
MMSYN1_0887 145 KNIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSR 181
5679******************998888887776655 PP
== domain 3 score: 12.7 bits; conditional E-value: 6.7e-05
TIGR01318 382 eavleadvviiafGfephamewlaehgikldskGrivaaeeselayqtsnpkifaGGdiv 441
+++le d +i+a Gf+p +e+l++ ++++ +G iv+++ + +t+ ++i++ Gd+
MMSYN1_0887 230 NEELEVDLIILAIGFRPA-TEFLKDTKLEMLGNGAIVVDK----HGRTNLKNIWSCGDCA 284
5679************96.69*****************94....5568888999999985 PP
>> TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.9 0.0 0.00028 0.035 2 32 .. 3 34 .. 2 72 .. 0.83
2 ? 5.4 0.0 0.013 1.6 2 44 .. 150 189 .. 149 194 .. 0.81
3 ! 7.7 0.1 0.0027 0.33 107 163 .. 189 244 .. 182 249 .. 0.86
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 0.00028
TIGR01988 2 ivIvGgGlvGlalAlaLassa.dlkvalveak 32
ivI+Gg+ G+++A +L++ + ++ +++++
MMSYN1_0887 3 IVIIGGAASGMTVASRLKKADkKAQIIVIQKE 34
9*****************76644555555444 PP
== domain 2 score: 5.4 bits; conditional E-value: 0.013
TIGR01988 2 ivIvGgGlvGlalAlaLassadlkvalveakaaekakspafdn 44
++++G+G +Gl + L++ + +++ l+e++ + ++ +fd+
MMSYN1_0887 150 VAVIGSGFIGLECCEMLEHFN-KEIVLIEKTS--RLNQRVFDQ 189
89***************9555.99*****985..456666776 PP
== domain 3 score: 7.7 bits; conditional E-value: 0.0027
TIGR01988 107 kvlqqaLlealqekknkvtllapaeveelere.sdaveltlsdgetleakLlvgADGa 163
+++ + L+++l +++ v+++ ++ +++++++ +++ ltl+++e+le +L++ A G
MMSYN1_0887 189 QEITDLLEQNLIKNN--VEIIKENGLKSITQTkDKRLSLTLDQNEELEVDLIILAIGF 244
678899999999996..99999999999877648899****************99775 PP
>> TIGR04369 fusion_not_SelD: oxidoreductase/SelD-related fusion protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.8 0.2 8.6e-08 1.1e-05 71 254 .. 75 287 .. 20 292 .. 0.78
Alignments for each domain:
== domain 1 score: 21.8 bits; conditional E-value: 8.6e-08
TIGR04369 71 vqaeitgldleekkllLknRp...sleydklsldvGaetl.keleklekklalpikPlepalalieqedkekaesekpvrvvGsGlaavEvalaLrkR 164
++ ++++d+e++k+ ++ +l+ydkl++ Ga+ + + ++ ++ + +++ le+a +l e+++++ + k v v+GsG+ ++E L +
MMSYN1_0887 75 SESVVKKIDAENQKVWYEKNNqllELDYDKLVISTGAKPIvPPIKGIDLPNIFTLTRLEDATELKEKLKDK---NIKKVAVIGSGFIGLECCEMLEHF 169
4566899********998765222689***********98788888888889*********9999998744...3678**************999987 PP
TIGR04369 165 wlk.......relklqaksrklnkklkkalkaakielvk.....................kkeakagkallCtGsk.apaWlaasglpvdekgRvlte 233
++ +l+ ++ +++++ l+++l + ++e+ k ++e + +l G + a ++l+++ l++ +g ++ +
MMSYN1_0887 170 NKEivliektSRLNQRVFDQEITDLLEQNLIKNNVEIIKenglksitqtkdkrlsltldqNEELEVDLIILAIGFRpATEFLKDTKLEMLGNGAIVVD 267
66511111113455555556899999999999999999889999999988888888776555555566667778663788999999999999999999 PP
TIGR04369 234 asLqvegkpeifavGDCavia 254
++ + ++ ++i+++GDCa +
MMSYN1_0887 268 KHGR-TNLKNIWSCGDCATVY 287
8876.6889999999999875 PP
>> TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 8.6 0.2 0.0014 0.17 1 33 [. 2 35 .. 2 40 .. 0.88
2 ? 4.0 0.0 0.035 4.4 1 43 [. 149 189 .. 149 194 .. 0.87
3 ! 11.3 0.2 0.00021 0.026 106 161 .. 190 245 .. 184 257 .. 0.85
Alignments for each domain:
== domain 1 score: 8.6 bits; conditional E-value: 0.0014
TIGR01984 1 dviivGgglvGlslAlaLsrks.klkialieaks 33
+++i+Gg+ +G+++A L++ k +i +i++++
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADkKAQIIVIQKEK 35
59****************9988789999998865 PP
== domain 2 score: 4.0 bits; conditional E-value: 0.035
TIGR01984 1 dviivGgglvGlslAlaLsrksklkialieaksaeaakssfda 43
+v+++G+g +Gl L++ +i lie++s ++ +fd+
MMSYN1_0887 149 KVAVIGSGFIGLECCEMLEHFN-KEIVLIEKTSRLNQ-RVFDQ 189
599****************999.9******9987776.77776 PP
== domain 3 score: 11.3 bits; conditional E-value: 0.00021
TIGR01984 106 dlkqallkrlaekkkiklyapaelkeierekde.aevkldneqkleakLlvaAdGan 161
++ +l ++l ++ ++++++ + lk+i+++kd+ ++ld++++le +L+++A G +
MMSYN1_0887 190 EITDLLEQNLIKN-NVEIIKENGLKSITQTKDKrLSLTLDQNEELEVDLIILAIGFR 245
5677777877776.9**************99984689****************8865 PP
>> TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.2 0.1 9.3e-05 0.012 4 37 .. 2 35 .. 1 39 [. 0.92
2 ! 9.1 0.3 0.00082 0.1 3 45 .. 148 188 .. 146 234 .. 0.71
3 ? -0.3 0.0 0.58 73 237 293 .. 196 253 .. 185 258 .. 0.73
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 9.3e-05
TIGR00562 4 kvvvvGgGisGLciayalekerpdvelvlvEakd 37
k+v++Gg sG+++a +l+k ++ +++++ +++
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADKKAQIIVIQKEK 35
79***************************98875 PP
== domain 2 score: 9.1 bits; conditional E-value: 0.00082
TIGR00562 3 kkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyT 45
kkv+v+G+G GL +le + e+vl+E+ R ++
MMSYN1_0887 148 KKVAVIGSGFIGLECCEMLEHF--NKEIVLIEKTSRLNQRVFD 188
89*****************988..88*********98777763 PP
== domain 3 score: -0.3 bits; conditional E-value: 0.58
TIGR00562 237 ekrlkekkvkvvkgekvtklek.rganetleakdGvkvetdsvvltvpakkaaklLke 293
e++l + v ++k +++ + + + + ++l +++ +++e d ++l++ + a+++Lk+
MMSYN1_0887 196 EQNLIKNNVEIIKENGLKSITQtKDKRLSLTLDQNEELEVDLIILAIGFRPATEFLKD 253
5555555677888888877765145667899999999999999999999888888886 PP
>> TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.9 0.0 0.0066 0.82 432 494 .. 70 132 .. 1 143 [. 0.62
2 ! 11.3 0.0 0.00016 0.02 377 478 .. 145 249 .. 133 268 .. 0.75
Alignments for each domain:
== domain 1 score: 5.9 bits; conditional E-value: 0.0066
TIGR03997 432 elvrdlaselkelgvevklGveadaelvlaekPDavvlatGsrparpdlagadservvtvrev 494
+++ + +s +k++ e + + +++++l+ D +v++tG++p p++ g d ++++t + +
MMSYN1_0887 70 DILVYSESVVKKIDAENQKVWYEKNNQLLELDYDKLVISTGAKPIVPPIKGIDLPNIFTLTRL 132
444555555555555555556667778888889999999999999999999999999987654 PP
== domain 2 score: 11.3 bits; conditional E-value: 0.00016
TIGR03997 377 rrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgreelaelvrdlaselkelgvevklGveada.....elvlaekPDavvl 469
++ kkv v+G+G Gle ++ + +++l+e+ ++l +v +++ e ++l+++ ++ +ke g++ + ++ + ++ ++ + D ++l
MMSYN1_0887 145 KNIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNQRVFD-QEITDLLE-QNLIKNNVEIIKENGLKSITQTKDKRlsltlDQNEELEVDLIIL 240
3449**********************************988754.45544444.68999999999999998666555433111114445556899999 PP
TIGR03997 470 atGsrparp 478
a G rpa
MMSYN1_0887 241 AIGFRPATE 249
999999865 PP
>> TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.8 0.2 0.00034 0.042 1 56 [. 2 59 .. 2 104 .. 0.72
2 ? 1.3 0.0 0.27 34 1 34 [. 149 182 .. 149 185 .. 0.91
3 ? 2.7 0.0 0.097 12 154 202 .. 194 245 .. 188 259 .. 0.79
Alignments for each domain:
== domain 1 score: 10.8 bits; conditional E-value: 0.00034
TIGR03197 1 kvavIGaGiAgaalalsLarrG..vqvtllekdeklaqgASgnrqGalypllsaddna 56
k+++IG+ +g+++a++L+++ +q+ +++k++ + gA g + + +p l+++d
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADkkAQIIVIQKEKYVSLGACGLPYFVANPSLKPTDLL 59
589***************887622688999**********************998743 PP
== domain 2 score: 1.3 bits; conditional E-value: 0.27
TIGR03197 1 kvavIGaGiAgaalalsLarrGvqvtllekdekl 34
kvavIG G g+ + + L ++ l+ek ++l
MMSYN1_0887 149 KVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRL 182
69***************************98776 PP
== domain 3 score: 2.7 bits; conditional E-value: 0.097
TIGR03197 154 llakaki..elklhfnteitslerdaeg.WqllsengevlaasvvVlAngaq 202
ll++ i +++++ ++ ++s+++++++ +l+ +++e+l+ + ++lA g +
MMSYN1_0887 194 LLEQNLIknNVEIIKENGLKSITQTKDKrLSLTLDQNEELEVDLIILAIGFR 245
555555556789************998879999999************9964 PP
>> TIGR02023 BchP-ChlP: geranylgeranyl reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 10.2 0.0 0.00051 0.064 2 63 .. 2 64 .. 1 89 [. 0.70
2 ! 7.6 0.0 0.0032 0.4 2 32 .. 149 179 .. 148 184 .. 0.93
Alignments for each domain:
== domain 1 score: 10.2 bits; conditional E-value: 0.00051
TIGR02023 2 dvlviGggpsGaaaaetLakagie..villerelarikPCGGaiPlalieefdlPedlidrrvr 63
++++iGg++sG + a L+ka+++ +i++++e + + +P + + P+dl+ r v+
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADKKaqIIVIQKE-KYVSLGACGLPYFVANPSLKPTDLLARTVE 64
689***************999875226777776.333322223555555555556666666665 PP
== domain 2 score: 7.6 bits; conditional E-value: 0.0032
TIGR02023 2 dvlviGggpsGaaaaetLakagievillere 32
+v+viG+g G e+L ++++e++l+e+
MMSYN1_0887 149 KVAVIGSGFIGLECCEMLEHFNKEIVLIEKT 179
79***************************97 PP
>> TIGR01813 flavo_cyto_c: flavocytochrome c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 6.4 1.4 0.006 0.75 2 34 .. 3 36 .. 2 41 .. 0.85
2 ! 9.9 0.0 0.00051 0.063 2 98 .. 150 239 .. 149 252 .. 0.77
Alignments for each domain:
== domain 1 score: 6.4 bits; conditional E-value: 0.006
TIGR01813 2 vvvvGsGlAGlsaaleakkagl.aevvvleKapv 34
+v++G + G++ a ++kka a+++v++K+++
MMSYN1_0887 3 IVIIGGAASGMTVASRLKKADKkAQIIVIQKEKY 36
9***************999875168999999876 PP
== domain 2 score: 9.9 bits; conditional E-value: 0.00051
TIGR01813 2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGGNsaiaaggmnaaktkiQkkkgieDskelfikdtlkggrgindpelvkklaeesadavdwlk 98
v v+GsG+ Gl +++ +e+v++eK+ s ++ t++ +++ i+ e + ++ lk+ +++d+ l +l ++ + vd++
MMSYN1_0887 150 VAVIGSGFIGLECCEMLEHFN-KEIVLIEKT------SRLNQRVFDQEITDLLEQNLIKNNVEIIKENGLKSITQTKDKRLSLTLDQNEELEVDLII 239
88*********9877666655.********7......667777777777888888888888888888888888888888887777777776666665 PP
>> TIGR02352 thiamin_ThiO: glycine oxidase ThiO
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.6 0.4 0.027 3.3 1 35 [. 3 36 .. 3 44 .. 0.81
2 ? -1.0 0.0 1.3 1.7e+02 167 205 .. 72 111 .. 46 114 .. 0.75
3 ? 3.1 0.0 0.081 10 1 30 [. 150 179 .. 150 185 .. 0.89
4 ! 6.1 0.0 0.0098 1.2 147 210 .. 185 250 .. 180 268 .. 0.81
Alignments for each domain:
== domain 1 score: 4.6 bits; conditional E-value: 0.027
TIGR02352 1 vlviGgGviGlsvAveLakrghkvtllekdevgsg 35
+++iGg G++vA +L+k+++k ++++ ++ ++
MMSYN1_0887 3 IVIIGGAASGMTVASRLKKADKKAQIIVIQK-EKY 36
689*******************999988774.454 PP
== domain 2 score: -1.0 bits; conditional E-value: 1.3
TIGR02352 167 eiieevevqeieargekvtavktsse.kvqadqvvlaaGa 205
+++e v++i+a+++kv k ++ +++ d++v+++Ga
MMSYN1_0887 72 LVYSESVVKKIDAENQKVWYEKNNQLlELDYDKLVISTGA 111
4566778899999999998888777678999999999998 PP
== domain 3 score: 3.1 bits; conditional E-value: 0.081
TIGR02352 1 vlviGgGviGlsvAveLakrghkvtllekd 30
v+viG G iGl L + ++++ l+ek
MMSYN1_0887 150 VAVIGSGFIGLECCEMLEHFNKEIVLIEKT 179
79***************9999999999986 PP
== domain 4 score: 6.1 bits; conditional E-value: 0.0098
TIGR02352 147 qvdprellkaLvkaleklGveiieevevqeieargekvtavktsse.kvqadqvvlaaGaw.akel 210
v +e+++ L+++l k veii+e ++i + ++k++++ +++ +++ d ++la G a+e+
MMSYN1_0887 185 RVFDQEITDLLEQNLIKNNVEIIKENGLKSITQTKDKRLSLTLDQNeELEVDLIILAIGFRpATEF 250
6888999999*********************99999888776554439*********997524444 PP
>> TIGR00551 nadB: L-aspartate oxidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.8 0.1 0.018 2.3 3 34 .. 1 35 [. 1 89 [. 0.85
2 ! 5.6 0.0 0.01 1.2 3 34 .. 148 180 .. 146 191 .. 0.81
3 ? 2.9 0.0 0.067 8.3 334 357 .. 262 285 .. 257 297 .. 0.89
Alignments for each domain:
== domain 1 score: 4.8 bits; conditional E-value: 0.018
TIGR00551 3 advvviGsGaagLsaalalaekyr...vvvlskae 34
+++v+iG+ a g+++a +l+++ + ++v+ k++
MMSYN1_0887 1 MKIVIIGGAASGMTVASRLKKADKkaqIIVIQKEK 35
689*************9986543322388888874 PP
== domain 2 score: 5.6 bits; conditional E-value: 0.01
TIGR00551 3 advvviGsGaagLsaalalaekyr.vvvlskae 34
++v+viGsG gL + l++ + +v++ k++
MMSYN1_0887 148 KKVAVIGSGFIGLECCEMLEHFNKeIVLIEKTS 180
589****************99887577777763 PP
== domain 3 score: 2.9 bits; conditional E-value: 0.067
TIGR00551 334 GGisvdaygrtevkGLYaiGevas 357
G i+vd++grt++k ++ G+ a+
MMSYN1_0887 262 GAIVVDKHGRTNLKNIWSCGDCAT 285
889***************999885 PP
>> TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.7 0.1 3.5 4.4e+02 1 29 [. 1 31 [. 1 38 [. 0.62
2 ! 15.4 0.5 1.2e-05 0.0014 1 85 [. 148 243 .. 148 322 .. 0.78
Alignments for each domain:
== domain 1 score: -2.7 bits; conditional E-value: 3.5
TIGR03026 1 mkiavvGlGYvGlplaall..aekgheVvgv 29
mki+++G G+++a l a+k ++++++
MMSYN1_0887 1 MKIVIIGGAASGMTVASRLkkADKKAQIIVI 31
7888888888888888877223344444444 PP
== domain 2 score: 15.4 bits; conditional E-value: 1.2e-05
TIGR03026 1 mkiavvGlGYvGlplaallaekgheVvgvDi.........dkekvek.....lnkgkspikepgleellkkalkkgrlrattdieeaikeadviiitV 84
+k+av+G G++Gl + +l + e+v++++ d+e + ++++ ike+gl+ + +++ +rl++t d +e++ e+d+ii+++
MMSYN1_0887 148 KKVAVIGSGFIGLECCEMLEHFNKEIVLIEKtsrlnqrvfDQEITDLleqnlIKNNVEIIKENGLKSITQTK--DKRLSLTLDQNEEL-EVDLIILAI 242
58****************************822222222233333332222245555567999999988766..88899999999777.899999998 PP
TIGR03026 85 p 85
+
MMSYN1_0887 243 G 243
7 PP
>> TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.3 0.2 0.13 16 3 35 .. 2 36 .. 1 43 [. 0.79
2 ! 11.3 0.1 0.00023 0.029 4 44 .. 150 190 .. 148 204 .. 0.89
Alignments for each domain:
== domain 1 score: 2.3 bits; conditional E-value: 0.13
TIGR00031 3 dyiivGaGlsGivlaeilaklnkr..vlvvekrnh 35
+++i+G sG+ +a l+k +k+ ++v++k +
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADKKaqIIVIQKEKY 36
789***************99998733567777665 PP
== domain 2 score: 11.3 bits; conditional E-value: 0.00023
TIGR00031 4 yiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydev 44
+ ++G+G+ G ++e+l+++nk+++++ek ++ ++d+
MMSYN1_0887 150 VAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLNQRVFDQE 190
569***************************99998888865 PP
>> TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 7.1 0.1 0.0038 0.47 26 60 .. 2 36 .. 1 45 [. 0.84
2 ? 4.5 0.0 0.023 2.9 12 57 .. 135 178 .. 128 181 .. 0.79
Alignments for each domain:
== domain 1 score: 7.1 bits; conditional E-value: 0.0038
TIGR03329 26 dvaivGGGftGlwtaillkqaepkldvlvleadlc 60
+++i+GG +G+ a lk+a+ k++++v++++
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADKKAQIIVIQKEKY 36
689***************************99754 PP
== domain 2 score: 4.5 bits; conditional E-value: 0.023
TIGR03329 12 qsdlakalkgdteadvaivGGGftGlwtaillkqaepkldvlvlea 57
++l + lk+++ +va++G Gf Gl + +l + +++++++e+
MMSYN1_0887 135 ATELKEKLKDKNIKKVAVIGSGFIGLECCEMLEHF--NKEIVLIEK 178
45677789999999************999888654..567777776 PP
>> TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.0 0.0 0.047 5.8 1 33 [. 2 35 .. 2 73 .. 0.83
2 ! 6.6 0.1 0.0077 0.96 1 35 [. 149 183 .. 149 266 .. 0.84
Alignments for each domain:
== domain 1 score: 4.0 bits; conditional E-value: 0.047
TIGR00745 1 kiailGaGAvGsllgakLaragadVtllars.kq 33
ki+i+G A G +++ +L++a+++ ++++ + ++
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADKKAQIIVIQkEK 35
79********************766666555344 PP
== domain 2 score: 6.6 bits; conditional E-value: 0.0077
TIGR00745 1 kiailGaGAvGsllgakLaragadVtllarskqle 35
k+a++G+G +G + +L +++++++l+ + ++l+
MMSYN1_0887 149 KVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRLN 183
799************************99875443 PP
>> TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.9 0.0 0.21 27 1 24 [. 3 26 .. 3 35 .. 0.85
2 ? 1.8 0.0 0.22 27 1 33 [. 150 182 .. 150 194 .. 0.88
3 ? 6.1 0.0 0.011 1.3 217 273 .. 198 254 .. 185 313 .. 0.80
Alignments for each domain:
== domain 1 score: 1.9 bits; conditional E-value: 0.21
TIGR03467 1 vvvvGgGlAGLaAAveLaraGvrv 24
+v++Gg +G++ A +L +a +
MMSYN1_0887 3 IVIIGGAASGMTVASRLKKADKKA 26
69***************9987554 PP
== domain 2 score: 1.8 bits; conditional E-value: 0.22
TIGR03467 1 vvvvGgGlAGLaAAveLaraGvrvtllEarrql 33
v+v+G G+ GL + L + ++ l+E +l
MMSYN1_0887 150 VAVIGSGFIGLECCEMLEHFNKEIVLIEKTSRL 182
89***************9999999999988776 PP
== domain 3 score: 6.1 bits; conditional E-value: 0.011
TIGR03467 217 ylesrggevrlgtrvreleasaggiralveaaeetlaadavvlAvpperaasllpee 273
l ++ +e+ + ++++++++++ l+ ++e+l+ d ++lA+ ++ a ++l ++
MMSYN1_0887 198 NLIKNNVEIIKENGLKSITQTKDKRLSLTLDQNEELEVDLIILAIGFRPATEFLKDT 254
45567788888899999*99988866656679999******************9982 PP
>> TIGR03944 dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.0 0.00021 0.026 126 183 .. 142 196 .. 134 267 .. 0.80
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 0.00021
TIGR03944 126 lakekkakrvgiiGcGlIarevlrfllelgpeleevslyDldearaeafaaelkeeve 183
l+ k++k+v++iG G+I+ e +++l + +e+ + +++ +++ f +e+++ e
MMSYN1_0887 142 LKD-KNIKKVAVIGSGFIGLECCEMLEHFNKEIV--LIEKTSRLNQRVFDQEITDLLE 196
444.59********************99998874..4445666666667777666665 PP
>> TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.9 0.0 0.00023 0.028 87 176 .. 136 225 .. 125 240 .. 0.64
Alignments for each domain:
== domain 1 score: 11.9 bits; conditional E-value: 0.00023
TIGR02964 87 dtleeevkaeaaaaaevvlfGaGHvgkalvrvlaklpvrvtlvdsreeelpeelp.egvealltd.epeaavaeapaes.avlvlThdHalDl 176
++l + k ++++ ++v++ G G +g + ++l++ + ++ l+++ + l +++ ++++ ll + +++v+ +++++ + + T+d l l
MMSYN1_0887 136 TEL--KEKLKDKNIKKVAVIGSGFIGLECCEMLEHFNKEIVLIEKTSR-LNQRVFdQEITDLLEQnLIKNNVEIIKENGlKSITQTKDKRLSL 225
333..34445578899***************************99854.44443325565555441345555555544413344555555555 PP
>> TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.6 0.0 0.031 3.9 3 34 .. 2 33 .. 1 46 [. 0.85
2 ? 5.0 0.1 0.024 3 3 90 .. 149 233 .. 136 260 .. 0.61
Alignments for each domain:
== domain 1 score: 4.6 bits; conditional E-value: 0.031
TIGR02853 3 liaviGGDarqlelirkLkeldakvslvGldq 34
+i++iGG a + + +Lk++d k +++ +++
MMSYN1_0887 2 KIVIIGGAASGMTVASRLKKADKKAQIIVIQK 33
79*******************99999988774 PP
== domain 2 score: 5.0 bits; conditional E-value: 0.024
TIGR02853 3 liaviGGDarqlelirkLkeldakvslvG.ldqledgftgvekleleeldlstvdvviLPvaGvsadGkvatvfseekvvlkkellekv 90
++aviG le + L++ + ++ l+ +l+++ + e ++l e++l + +v i+ +G+++ t+ ++++++l+ ++ e++
MMSYN1_0887 149 KVAVIGSGFIGLECCEMLEHFNKEIVLIEkTSRLNQRVFDQEITDLLEQNLIKNNVEIIKENGLKS----ITQTKDKRLSLTLDQNEEL 233
456666666666666666666666555541345666666666666666666665555555555433....3455555555555555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (447 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 348 (0.0775401); expected 89.8 (0.02)
Passed bias filter: 196 (0.043672); expected 89.8 (0.02)
Passed Vit filter: 54 (0.0120321); expected 4.5 (0.001)
Passed Fwd filter: 36 (0.00802139); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 36 [number of targets reported over threshold]
# CPU time: 0.55u 0.18s 00:00:00.73 Elapsed: 00:00:00.34
# Mc/sec: 1887.97
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0887 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0906 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0906.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0906/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0906 [L=238]
Description: choline/ethanolamine kinase? 2=Generic Lipid salvage and biogenesis
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-21 74.5 0.8 2.2e-21 74.1 0.8 1.2 1 TIGR02721 ycfN_thiK: thiamine kinase
3.1e-06 25.1 1.1 4.5e-06 24.6 1.1 1.4 1 TIGR02172 Fb_sc_TIGR02172: fibrobacter succinogenes paralogo
0.00013 19.4 0.8 0.0039 14.7 0.1 2.2 2 TIGR03724 arch_bud32: Kae1-associated kinase Bud32
Domain annotation for each model (and alignments):
>> TIGR02721 ycfN_thiK: thiamine kinase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 74.1 0.8 1.5e-24 2.2e-21 18 243 .. 8 223 .. 2 232 .. 0.77
Alignments for each domain:
== domain 1 score: 74.1 bits; conditional E-value: 1.5e-24
TIGR02721 18 egisfvaRrqskvekalgvdrqreykiLqalsalklaPkvilvneewllvewleGevitkdefvaldellelaallaqlhsqplsgarlslkarlaqy 115
g+++ R ++ ++ + +++ + l++ ++ Pk i n++ ++ e+++G + l + + +a+ ++q+h+++l+ +lk+r++ y
MMSYN1_0906 8 GGTNVSYRVDNTFLQIKNYNNFNHQINYELLKNFDFVPKLISNNQKEIVWEYIDGVEPV----IDLGNINLIANQIKQIHNSNLKFPDNNLKQRVEYY 101
4444444444444444444444443344455666778******************7555....99********************************* PP
TIGR02721 116 WlqidparrtpellrllkqfrkapepaplklallHlDvhaeNlvkteqGlklIDWEYAsdgDialeLaavlrandeeqqee..lverYcqkrrieevs 211
+++ + + ++e++ + ++ + + ++ ++lH D+ N+++te+ + +DWEYA++gD +eLa ++ ++++++q e +++ Y + + +
MMSYN1_0906 102 KTKMSELNTSVEVISKYASLIDDILDSMEFNTPLHNDLFPFNMIQTENKIYFVDWEYATMGDKHFELAYLIETSNMSNQCEkvFLDLYRNYDEH---K 196
*************************************************************************966655431266777554433...3 PP
TIGR02721 212 elkrqvkaWlPwvdylallWfelrwkqtgdeq 243
l +++ v y+++lW + k +++
MMSYN1_0906 197 LLLNKI-----FVNYIVILWIRTQTKAPHNTT 223
455544.....456666666655555555555 PP
>> TIGR02172 Fb_sc_TIGR02172: fibrobacter succinogenes paralogous family TIGR02172
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.6 1.1 3e-09 4.5e-06 98 203 .. 73 182 .. 31 206 .. 0.77
Alignments for each domain:
== domain 1 score: 24.6 bits; conditional E-value: 3e-09
TIGR02172 98 kifAeeakklHatkcd..tsklksakekirkliee...kkfvpddykeklralieevpdtktClhgDlqignlivdgkrtywiDlGeFgyGsplfDlg 190
+ A++ k++H + + ++lk++ e ++ ++e + v +y + +++++++ +t lh Dl + n+i +++ y++D ++G+ f+l+
MMSYN1_0906 73 NLIANQIKQIHNSNLKfpDNNLKQRVEYYKTKMSElntSVEVISKYASLIDDILDSME-FNTPLHNDLFPFNMIQTENKIYFVDWEYATMGDKHFELA 169
4678888999976544215667777777766666511133455566666666666654.5799*********************************** PP
TIGR02172 191 llfmltnvldekk 203
l ++n+ ++ +
MMSYN1_0906 170 YLIETSNMSNQCE 182
*****99987643 PP
>> TIGR03724 arch_bud32: Kae1-associated kinase Bud32
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3.2 0.0 0.0082 12 67 115 .. 48 91 .. 13 98 .. 0.83
2 ! 14.7 0.1 2.6e-06 0.0039 87 146 .. 111 169 .. 97 203 .. 0.71
Alignments for each domain:
== domain 1 score: 3.2 bits; conditional E-value: 0.0082
TIGR03724 67 vdpeekkivmeyiegkklkdlleekelellkevGelvgklHkagivhgD 115
+ +++k+iv eyi+g + +++ ++ +++++ ++H+ ++ + D
MMSYN1_0906 48 ISNNQKEIVWEYIDGVE--PVIDL---GNINLIANQIKQIHNSNLKFPD 91
6678889******9954..55555...4578899999999999987766 PP
== domain 2 score: 14.7 bits; conditional E-value: 2.6e-06
TIGR03724 87 lleekelellkevGelvgklHkagivhgDlttsNiivkddklyliDfGLgkkskevedka 146
++e ++++ + +++ + + +h+Dl + N+i +++k+y++D + + ++ + a
MMSYN1_0906 111 SVEV-ISKYASLIDDILDSMEFNTPLHNDLFPFNMIQTENKIYFVDWEYATMGDKHFELA 169
3333.237777777888888888899********************98887766554444 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (238 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 214 (0.0476827); expected 89.8 (0.02)
Passed bias filter: 74 (0.0164884); expected 89.8 (0.02)
Passed Vit filter: 5 (0.00111408); expected 4.5 (0.001)
Passed Fwd filter: 3 (0.000668449); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 1708.89
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0906 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0907 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0907.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0907/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0907 [L=264]
Description: Cof-like hydrolase 2=Generic Unclear
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-53 180.4 12.2 1.3e-53 180.1 12.2 1.0 1 TIGR00099 Cof-subfamily: Cof-like hydrolase
9.7e-22 76.1 5.0 1.4e-21 75.5 5.0 1.2 1 TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
1.3e-13 49.3 4.4 6.3e-08 30.7 1.7 2.2 2 TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0
1.4e-13 48.9 1.7 3.3e-11 41.1 1.6 2.2 1 TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfa
2.6e-12 44.7 1.3 1.5e-06 25.9 0.3 2.2 2 TIGR01485 SPP_plant-cyano: sucrose phosphatase
3.9e-07 27.6 0.0 6.5e-07 26.9 0.0 1.4 1 TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosp
2.6e-06 25.1 0.0 0.0076 13.8 0.0 2.1 2 TIGR02471 sucr_syn_bact_C: sucrose-phosphate synthase, sucro
5.2e-05 21.4 0.1 0.0001 20.4 0.1 1.7 1 TIGR02461 osmo_MPG_phos: mannosyl-3-phosphoglycerate phospha
0.00037 18.1 1.4 0.0025 15.4 0.1 2.1 2 TIGR00338 serB: phosphoserine phosphatase SerB
0.0004 18.1 0.3 0.0022 15.7 0.1 2.0 2 TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hy
0.001 16.9 0.3 0.0023 15.7 0.3 1.8 1 TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase
0.0016 16.4 0.4 0.022 12.7 0.0 2.3 2 TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydr
------ inclusion threshold ------
0.012 13.5 1.2 0.055 11.4 0.2 2.5 2 TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-ph
Domain annotation for each model (and alignments):
>> TIGR00099 Cof-subfamily: Cof-like hydrolase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 180.1 12.2 3.8e-56 1.3e-53 1 246 [. 3 258 .. 3 261 .. 0.96
Alignments for each domain:
== domain 1 score: 180.1 bits; conditional E-value: 3.8e-56
TIGR00099 1 lifiDlDGTLls....kdkeispetkealaklrekGikvvlaTGRsykevkeilkelgld...plivanGaavvdengkeilykkpldldlveeilni 91
++f+D+D+TL + ++ +i+++ +e++++++++ k++++TGR+yk++k++l ++ + ++i ++Ga+v+ ++g e+ ykk++d+++ ++l++
MMSYN1_0907 3 YLFSDFDNTLRNskvkNSLKIDQKDLEFVKEFQKN-NKLIVSTGRPYKQLKKHLLDEYNLlpdYFIANTGALVCNNQG-EVFYKKTIDKNIKIQLLDF 98
68******************************777.9**************999888777788999999999999997.******************* PP
TIGR00099 92 lkklg..ldvilysd.dsiyfsknkneifeiekkklaepkkevvknqlledddlkillllleaedldkleealkkeeleeelsv.vsssedsieitak 185
lk+ +dvi++ + d+ f +kn++ ++ek++++ ++ +++ + +l+d+dl +l++ ++++++d++e +++k++le ++++ +++++ ++ei+a+
MMSYN1_0907 99 LKTIVdqIDVIVFATsDNESFLFHKNWSTDVEKFFFGLENLNKTLD-YLYDKDLLCLKIECSQNTWDQIENFINKNKLEVNITFnSINNKLFNEIHAF 195
****99********99************************999999.*************************************999999******** PP
TIGR00099 186 gvsKgsalqslaeklgislenviaiGDseNDieMleaagvg..vamgnaneelkaladyvtds 246
+vsKg+a++ l+ekl+is ++i+ GD++ND++M+e++ + ++ +++n++++++a+y++++
MMSYN1_0907 196 NVSKGQAIKGLQEKLNISSVDIIVAGDDYNDLSMFEMFYDNsyICKHEHNKNIRNKARYLINN 258
**************************************98888****************9986 PP
>> TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.5 5.0 4e-24 1.4e-21 1 215 [. 3 233 .. 3 236 .. 0.79
Alignments for each domain:
== domain 1 score: 75.5 bits; conditional E-value: 4e-24
TIGR01484 1 llffDlDgTLldpk....lelseelieaLerlrealgvkvvivTGRslaeik.ellkqlnl.elpliaengalieaqgeklyaea.....lpedvaev 87
+lf+D+D+TL ++k l+++ + e +++++++ k+++ TGR ++ +k +ll+ nl + + ia++gal+ ++ ++++ ++ + + ++
MMSYN1_0907 3 YLFSDFDNTLRNSKvknsLKIDQKDLEFVKEFQKN--NKLIVSTGRPYKQLKkHLLDEYNLlPDYFIANTGALVCNNQGEVFYKKtidknIKIQLLDF 98
59*********************************..8***********997257899999************9998888887766332333344444 PP
TIGR01484 88 llseekelkeieailkslseryvgtfvedkalevaihysgqke...............leqeldskllerlekigirkdleleailsrsnalqkeget 170
l++ + i+ i+ + s++ + f+++ +++v+ ++ g+++ l+ e+ + + +e++ ++ +le+++++++ +++
MMSYN1_0907 99 LKT---IVDQIDVIVFATSDNESFLFHKNWSTDVEKFFFGLENlnktldylydkdllcLKIECSQNTWDQIENFINKNKLEVNITFNSI-----NNKL 188
444...4444444444444555588888888888777666664357777776666677777777777777777777799*******986.....6777 PP
TIGR01484 171 llevlpagvdKgkalqalleelnlkkeeilafGDsgNDeemleva 215
++e+ +v+Kg+a++ l e+ln++ +i+++GD++ND++m+e++
MMSYN1_0907 189 FNEIHAFNVSKGQAIKGLQEKLNISSVDIIVAGDDYNDLSMFEMF 233
778877*************************************96 PP
>> TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0175-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.8 0.1 3.9e-07 0.00013 3 75 .. 3 88 .. 1 130 [. 0.74
2 ! 30.7 1.7 1.8e-10 6.3e-08 91 181 .. 134 232 .. 100 258 .. 0.69
Alignments for each domain:
== domain 1 score: 19.8 bits; conditional E-value: 3.9e-07
TIGR01487 3 lvavDiDgTltd....knrlislraieairklekkGikvvlvtGnevkfvea..l.......avligvsgavvaEnGgvvlykk.ed 75
+ +D D Tl + ++ i+++ +e++++++k+ k+++ tG+ +k +++ l +i +ga+v+ n g v+ykk +d
MMSYN1_0907 3 YLFSDFDNTLRNskvkNSLKIDQKDLEFVKEFQKN-NKLIVSTGRPYKQLKKhlLdeynllpDYFIANTGALVCNNQGEVFYKKtID 88
5678******9888878889*************88.9********998887633222222223567788888888888888885433 PP
== domain 2 score: 30.7 bits; conditional E-value: 1.8e-10
TIGR01487 91 kkkielrdllkneysra..slvvdregkdvdevrkiakerglevvasgyav......hilkkgvdKgvgvkklkellGlkkeevaaiGDsenDldlFr 180
+ +l+++l+ y + +l + + d++++ +++ +lev+ +++ i +v+Kg ++k l+e+l +++ ++++ GD nDl +F+
MMSYN1_0907 134 FGLENLNKTLDYLYDKDllCLKIECSQNTWDQIENFINKNKLEVNITFNSInnklfnEIHAFNVSKGQAIKGLQEKLNISSVDIIVAGDDYNDLSMFE 231
3455667777778876511444555566789*********99999744443221222588889**********************************9 PP
TIGR01487 181 v 181
+
MMSYN1_0907 232 M 232
7 PP
>> TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.1 1.6 9.6e-14 3.3e-11 2 183 .. 5 232 .. 4 240 .. 0.79
Alignments for each domain:
== domain 1 score: 41.1 bits; conditional E-value: 9.6e-14
TIGR01482 2 asDlDgTlvdee..r..alnlsaleairkaesvyillvlvtGrsvkfake.laklig.tpdivilenGgeilynegl..ddkflenleekwerdevvk 91
sD D+Tl + + + ++ + le+ + ++ +l+++tGr +k k+ l + pd+ i++ G+++ n+g +k +++ + +d ++
MMSYN1_0907 5 FSDFDNTLRNSKvkNslKIDQKDLEFVKEFQKN-NKLIVSTGRPYKQLKKhLLDEYNlLPDYFIANTGALVCNNQGEvfYKKTIDKNIKIQLLDFLKT 101
69******6654113114556667777666654.5********8865554266666689*******99999999976654444444444445566677 PP
TIGR01482 92 ktesfeelklqye.teqslvvvsegvdvdavrevikklglelkkv......................................ssGkdldilpkgvdK 150
+ ++++ + + + e l+ + dv++ ++l l++ + +i +v+K
MMSYN1_0907 102 IVDQIDVIVFATSdNESFLFHKNWSTDVEKFFFGLENLNKTLDYLydkdllclkiecsqntwdqienfinknklevnitfnsiNNKLFNEIHAFNVSK 199
77888888887776777777778888888888888888888888889999999***************************866555556899999*** PP
TIGR01482 151 GkavkylkeklgikpeeilviGDSeNDidlFev 183
G+a+k l+ekl i++ +i+v GD ND+ +Fe+
MMSYN1_0907 200 GQAIKGLQEKLNISSVDIIVAGDDYNDLSMFEM 232
*******************************96 PP
>> TIGR01485 SPP_plant-cyano: sucrose phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.5 0.0 1.6e-06 0.00055 4 81 .. 4 81 .. 2 93 .. 0.81
2 ! 25.9 0.3 4.2e-09 1.5e-06 129 202 .. 157 233 .. 148 249 .. 0.85
Alignments for each domain:
== domain 1 score: 17.5 bits; conditional E-value: 1.6e-06
TIGR01485 4 lvsdldetlvdrddgdnsallrlnallearrredsllvystGrsysly.kelrkqkpllePdilvlsvGseivyggaev 81
l sd+d+tl + + ++ ++ + + + ++ ++ ++l+ stGr y+ k+l + +ll Pd+ + G+ + ++ ev
MMSYN1_0907 4 LFSDFDNTLRNSKVKNSLKIDQKDLEFVKEFQKNNKLIVSTGRPYKQLkKHLLDEYNLL-PDYFIANTGALVCNNQGEV 81
679*******9999999999888877777888888*********976515677777776.*********9888877655 PP
== domain 2 score: 25.9 bits; conditional E-value: 4.2e-09
TIGR01485 129 eaaaevlkqleeeleksgldvkliyssGkd.l..dilPqgadkgqalqylleklkiepsqtlvCGdsGndielfeis 202
e +++ +q+e+ ++k +l+v++ + s ++ l +i + kgqa++ l+ekl+i++ + +v Gd nd+++fe+
MMSYN1_0907 157 ECSQNTWDQIENFINKNKLEVNITFNSINNkLfnEIHAFNVSKGQAIKGLQEKLNISSVDIIVAGDDYNDLSMFEMF 233
6789999******************8765422346888899*********************************985 PP
>> TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.9 0.0 1.9e-09 6.5e-07 3 221 .. 5 240 .. 3 258 .. 0.60
Alignments for each domain:
== domain 1 score: 26.9 bits; conditional E-value: 1.9e-09
TIGR01486 3 ftDlDgtLldehsYd.l...gpAkevlerlqelgipvilctSKtaaEve.elrkelgle.dpfivEnGaaiylprgsra....eeeveeialGksyek 90
f+D D+tL +++ + l + e +++ q+ ++i+ t + + ++ +l +e +l d fi+ Ga + ++g ++ +i+l ++
MMSYN1_0907 5 FSDFDNTLRNSKVKNsLkidQKDLEFVKEFQKN-NKLIVSTGRPYKQLKkHLLDEYNLLpDYFIANTGALVCNNQGEVFykktIDKNIKIQLLDFLKT 101
677777776654321121112233455555544.4566666666665541567777776688888888888877776554434444488888888888 PP
TIGR01486 91 iraeLeel..eeelglklkglgdltaeeiae.ltGLsreaaalaqereysetlle....dseekeerleealaelglev......vkgarfyhvlgae 175
i +++ + + + + ++ +++ +++++ + GL++ ++++ + y+ ll s++ ++++e+ +++ lev ++ f +++ +
MMSYN1_0907 102 IVDQIDVIvfATSDNESF-LFHKNWSTDVEKfFFGLEN--LNKTLDYLYDKDLLClkieCSQNTWDQIENFINKNKLEVnitfnsINNKLFNEIHAFN 196
888887762234445555.4455545555551678864..4455555555555444011455566666777766665542222224566789999*** PP
TIGR01486 176 sdKGkAvnalkqlykekekaikvvglGDspnDlpllevvdlavvvk 221
++KG+A++ l+++++ + ++ +GD +nDl+++e ++
MMSYN1_0907 197 VSKGQAIKGLQEKLNIS--SVDIIVAGDDYNDLSMFEMFYDNSYIC 240
***************98..9999**************865444444 PP
>> TIGR02471 sucr_syn_bact_C: sucrose-phosphate synthase, sucrose phosphatase-like domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 9.6 0.0 0.00042 0.14 2 92 .. 4 96 .. 3 143 .. 0.71
2 ! 13.8 0.0 2.2e-05 0.0076 126 192 .. 162 231 .. 153 256 .. 0.84
Alignments for each domain:
== domain 1 score: 9.6 bits; conditional E-value: 0.00042
TIGR02471 2 iltdldntLlg..ddegLa...efvellrtagkdvsfGiatGrslesalk.llkklklPsPdvliaavGteiyygeelrsdkaWkkhikhkWrrkav 92
+++d+dntL + +++L + +e++++ +k+ + + tGr ++ +k ll +++l Pd +ia+ G+ + + + + ++kk i+++ + + +
MMSYN1_0907 4 LFSDFDNTLRNskVKNSLKidqKDLEFVKEFQKNNKLIVSTGRPYKQLKKhLLDEYNL-LPDYFIANTGALVC---NNQGEVFYKKTIDKNIKIQLL 96
568999999884334666521133456679999***********99877626678887.7*********9875...556667777777777665543 PP
== domain 2 score: 13.8 bits; conditional E-value: 2.2e-05
TIGR02471 126 slkqirkrLrqqelavkvils...leafLdvlPlraskelalrylslrwglpleqlLvagdsgndeellr 192
+ +qi++ +++++l+v++ ++ + f ++ + sk++a++ l ++++ +++vagd nd +++
MMSYN1_0907 162 TWDQIENFINKNKLEVNITFNsinNKLFNEIHAFNVSKGQAIKGLQEKLNISSVDIIVAGDDYNDLSMFE 231
56799999999******998622257899************************************99976 PP
>> TIGR02461 osmo_MPG_phos: mannosyl-3-phosphoglycerate phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.4 0.1 3e-07 0.0001 148 219 .. 156 232 .. 4 239 .. 0.61
Alignments for each domain:
== domain 1 score: 20.4 bits; conditional E-value: 3e-07
TIGR02461 148 vlesrerleailvalrakglev..tagg....rfyevvg.gsdKGkAikvllelyklrlgaivtvglGDsenDlpllea 219
+++s++++++i ++++ lev t+ + f e+++ + KG+Aik l+e + + + +GD +nDl+++e+
MMSYN1_0907 156 IECSQNTWDQIENFINKNKLEVniTFNSinnkLFNEIHAfNVSKGQAIKGLQEKLN--ISSVDIIVAGDDYNDLSMFEM 232
4567777777765577777776223333222168999999************9665..578888899**********96 PP
>> TIGR00338 serB: phosphoserine phosphatase SerB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.8 0.1 0.11 37 78 131 .. 15 70 .. 5 109 .. 0.74
2 ! 15.4 0.1 7.3e-06 0.0025 150 186 .. 196 232 .. 164 259 .. 0.78
Alignments for each domain:
== domain 1 score: 1.8 bits; conditional E-value: 0.11
TIGR00338 78 kkveeklelteGveelvkkLkekgykvaviSGgFdlvaeklkekLgl..davfaNr 131
+kv+++l++ + e vk+ ++++ ++ ++++ ++l ++ +l d+ +aN+
MMSYN1_0907 15 SKVKNSLKIDQKDLEFVKEFQKNNKLIVSTGRPYKQLKKHLLDEYNLlpDYFIANT 70
57888888888889999999988866665555799999999988887667777775 PP
== domain 2 score: 15.4 bits; conditional E-value: 7.3e-06
TIGR00338 150 esakaktllkllekegislektvavGDGanDlsmika 186
+ +k++ ++ l+ek +is+ ++++ GD nDlsm++
MMSYN1_0907 196 NVSKGQAIKGLQEKLNISSVDIIVAGDDYNDLSMFEM 232
446999****************************985 PP
>> TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.2 0.0 0.34 1.2e+02 116 136 .. 60 82 .. 6 113 .. 0.72
2 ! 15.7 0.1 6.4e-06 0.0022 147 193 .. 198 244 .. 183 252 .. 0.83
Alignments for each domain:
== domain 1 score: 0.2 bits; conditional E-value: 0.34
TIGR01491 116 klqaDyvlsne..lvfdekGfvq 136
+l +Dy ++n lv +++G+v
MMSYN1_0907 60 NLLPDYFIANTgaLVCNNQGEVF 82
35689999985448889988874 PP
== domain 2 score: 15.7 bits; conditional E-value: 6.4e-06
TIGR01491 147 kkgiavkrlkseLnaskeetvavGDskedasifeva.dlaialgdege 193
kg+a+k l+++Ln+s +++ GD +d+s+fe+ d +++ +++
MMSYN1_0907 198 SKGQAIKGLQEKLNISSVDIIVAGDDYNDLSMFEMFyDNSYICK-HEH 244
5999*****************************97526677666.334 PP
>> TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.7 0.3 6.6e-06 0.0023 163 208 .. 187 232 .. 3 237 .. 0.68
Alignments for each domain:
== domain 1 score: 15.7 bits; conditional E-value: 6.6e-06
TIGR02463 163 nRlsHllgaeaskgkavnalkkalnekdvkvlgLGDspnDlpLLev 208
+ + ++skg+a++ l+++ln v ++ GD nDl++ e+
MMSYN1_0907 187 KLFNEIHAFNVSKGQAIKGLQEKLNISSVDIIVAGDDYNDLSMFEM 232
34556667799*******************************9875 PP
>> TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.9 0.2 0.13 46 2 15 .. 4 17 .. 3 105 .. 0.77
2 ! 12.7 0.0 6.4e-05 0.022 136 176 .. 192 232 .. 157 233 .. 0.80
Alignments for each domain:
== domain 1 score: 1.9 bits; conditional E-value: 0.13
TIGR01488 2 aifDfDgTLtdqds 15
++DfD TL +
MMSYN1_0907 4 LFSDFDNTLRNSKV 17
6899**99977654 PP
== domain 2 score: 12.7 bits; conditional E-value: 6.4e-05
TIGR01488 136 vnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlpllkl 176
+ ++ +Kg+++k l+e+ ++ +ii GD nDl+++++
MMSYN1_0907 192 IHAFNVSKGQAIKGLQEKLNISSVDIIVAGDDYNDLSMFEM 232
788999***************8889*************987 PP
>> TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.3 0.0 0.63 2.2e+02 82 117 .. 15 50 .. 2 97 .. 0.72
2 ? 11.4 0.2 0.00016 0.055 71 111 .. 193 233 .. 172 259 .. 0.74
Alignments for each domain:
== domain 1 score: -0.3 bits; conditional E-value: 0.63
TIGR01670 82 eeileklalkdeevafiGddlvdkevlekvGlsvav 117
+++++ l+++++++ f+ + + +++ + G +++
MMSYN1_0907 15 SKVKNSLKIDQKDLEFVKEFQKNNKLIVSTGRPYKQ 50
556666666666666666666666666666555543 PP
== domain 2 score: 11.4 bits; conditional E-value: 0.00016
TIGR01670 71 yqGskdklaifeeileklalkdeevafiGddlvdkevlekv 111
+ + k ++++ ++ekl+++ ++ + Gdd +d +++e
MMSYN1_0907 193 HAFNVSKGQAIKGLQEKLNISSVDIIVAGDDYNDLSMFEMF 233
5555678889999**********************999864 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (264 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 332 (0.073975); expected 89.8 (0.02)
Passed bias filter: 130 (0.0289661); expected 89.8 (0.02)
Passed Vit filter: 24 (0.00534759); expected 4.5 (0.001)
Passed Fwd filter: 13 (0.00289661); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 13 [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.21
# Mc/sec: 1805.31
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0907 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0908 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0908.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0908/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0908 [L=396]
Description: misC 4=Probable Protein export
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-27 95.1 18.3 1.3e-27 95.1 18.3 1.9 2 TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/
Domain annotation for each model (and alignments):
>> TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.8 0.2 0.07 3.1e+02 157 186 .. 37 54 .. 7 70 .. 0.46
2 ! 95.1 18.3 2.8e-31 1.3e-27 2 188 .. 164 367 .. 163 370 .. 0.77
Alignments for each domain:
== domain 1 score: -0.8 bits; conditional E-value: 0.07
TIGR03592 157 pvmflfmflffpaglllYwvvsnlftilqq 186
+ flf+ +++ + ++q+
MMSYN1_0908 37 VFGFLFILVSML------------WGCVQM 54
223333333333............333322 PP
== domain 2 score: 95.1 bits; conditional E-value: 2.8e-31
TIGR03592 2 yglaIilltlvirllllplsakqiksmrkmqelqpklkeiqekyk.....edrqklqqemmklykeegvnplaGcLPlLiQmPillaLyavllrsiel 94
++aI+l tl+i+ ++l + +k+ +++kmq++q k++ iq+kyk +++qk+q e+++lyk+e+++ ++ + + +P+l+a+ya++ ++ +l
MMSYN1_0908 164 AIFAIFLTTLLIKGITLSFGWKSQINQEKMQDIQLKIADIQAKYKdkkdmQSKQKQQLEIQALYKKENMSQFSALAGSFAPLPFLFAIYAIVRSTRAL 261
579******************************************7776667****************************************666666 PP
TIGR03592 95 r...kapfl.....wiedlsspdptveatiallaiy..ilpvlaglttflqqkls......apkpadpaqqkimlyimpvmflfmflffpaglllYwv 176
+ p++ w ++++s++++ + +laiy + +v + l t+lq+k + +++++ ++q im ++m ++f+++ +++++g+++Yw+
MMSYN1_0908 262 KiaaVGPIAliegpW-QQITSGNYIYII---ILAIYlpLQAVSMLLPTLLQMKKQksitltEAQKKSRKKQLIMQVVMMFVFIIIIVSVATGVCIYWI 355
422234444667767.788888883332...22222232233332223332222223334344445555999************************** PP
TIGR03592 177 vsnlftilqqli 188
+s++++i+q++
MMSYN1_0908 356 FSSVLQIIQTYA 367
**********96 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (396 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 601 (0.133913); expected 89.8 (0.02)
Passed bias filter: 128 (0.0285205); expected 89.8 (0.02)
Passed Vit filter: 7 (0.00155971); expected 4.5 (0.001)
Passed Fwd filter: 2 (0.000445633); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 2707.97
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0908 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0909 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0909.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0909/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0909 [L=109]
Description: rnpA: ribonuclease P protein component 5=Equivalog RNA metabolism
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.3e-22 75.5 6.1 9.1e-22 75.4 6.1 1.0 1 TIGR00188 rnpA: ribonuclease P protein component
Domain annotation for each model (and alignments):
>> TIGR00188 rnpA: ribonuclease P protein component
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 75.4 6.1 2e-25 9.1e-22 1 108 [. 1 109 [] 1 109 [] 0.96
Alignments for each domain:
== domain 1 score: 75.4 bits; conditional E-value: 2e-25
TIGR00188 1 lkksrsLrlksefqkvfkkgfrasnsflslfvldknkkklsrvglsvsKkvknAveRnrikRrlrevfrkrleele..aldlvvvvrkgvleltfeal 96
+k +r ++++ efq++ ++ ++n ++++++ +n +++++ g+sv Kk++nAv Rn++kR++r ++r++ +e+ d+++ vrk vlel++ +l
MMSYN1_0909 1 MKNKRVIKKNFEFQEIINYKKTVKNFCFVIYYK-DNDQSYLKYGISVGKKIGNAVVRNKVKRQIRMILRQNINEIGsiSKDVIILVRKSVLELKYATL 97
67889999999**********************.999***************************************9999****************** PP
TIGR00188 97 eklllellkrik 108
+k+l +l+k ik
MMSYN1_0909 98 SKSLIKLIKEIK 109
*******99875 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (109 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 204 (0.0454545); expected 89.8 (0.02)
Passed bias filter: 59 (0.0131462); expected 89.8 (0.02)
Passed Vit filter: 2 (0.000445633); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 782.64
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0909 FINISH
###############################################################################################
###############################################################################################
############# TIGRFAM MMSYN1_0910 START
###############################################################################################
# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /bmm/home/cafa3/minimalGenome/fastaFiles/MMSYN1/MMSYN1_0910.fasta
# target HMM database: /bmm/home/cafa3/minimalGenome/tigrfamDB/TIGRFAMs_15.0_HMM.LIB
# output directed to file: /bmm/home/cafa3/minimalGenome/output/MMSYN1/MMSYN1_0910/tigrfam/equivalogs.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: MMSYN1_0910 [L=44]
Description: rpmH_bact: ribosomal protein L34 5=Equivalog Translation
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.1e-25 85.2 6.3 6.5e-25 85.1 6.3 1.0 1 TIGR01030 rpmH_bact: ribosomal protein bL34
Domain annotation for each model (and alignments):
>> TIGR01030 rpmH_bact: ribosomal protein bL34
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 85.1 6.3 1.4e-28 6.5e-25 1 44 [] 1 44 [] 1 44 [] 0.99
Alignments for each domain:
== domain 1 score: 85.1 bits; conditional E-value: 1.4e-28
TIGR01030 1 mkRTyqPsnlkrkrthGFraRMaTknGRkvlkrRRaKgRkkLtv 44
mkRT+qPs+lk +r hGFraRMaT+nGRkv+k+RRaKgR +L++
MMSYN1_0910 1 MKRTWQPSKLKHARVHGFRARMATENGRKVIKARRAKGRVRLSA 44
9*****************************************96 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (44 residues searched)
Target model(s): 4488 (1436043 nodes)
Passed MSV filter: 70 (0.0155971); expected 89.8 (0.02)
Passed bias filter: 43 (0.00958111); expected 89.8 (0.02)
Passed Vit filter: 4 (0.000891266); expected 4.5 (0.001)
Passed Fwd filter: 1 (0.000222816); expected 0.0 (1e-05)
Initial search space (Z): 4488 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 332.56
//
[ok]
###############################################################################################
############# TIGRFAM MMSYN1_0910 FINISH
###############################################################################################